Chromatin signature discovery via histone modification profile alignments.

scientific article published on 18 September 2012

Chromatin signature discovery via histone modification profile alignments. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/NAR/GKS848
P8608Fatcat IDrelease_w73nl2yfdjbqxjloewcw6cn57y
P932PMC publication ID3505981
P698PubMed publication ID22989711
P5875ResearchGate publication ID230878829

P50authorVictoria V LunyakQ57274875
P2093author name stringI King Jordan
Jianrong Wang
P2860cites workThree transitions in the RNA polymerase II transcription complex during initiationQ24532893
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomesQ24534193
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemesQ24558736
A gene atlas of the mouse and human protein-encoding transcriptomesQ24568043
c-Myc regulates transcriptional pause releaseQ24629119
Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cellsQ35672244
High concentrations of long interspersed nuclear element sequence distinguish monoallelically expressed genesQ35814612
Unsupervised pattern discovery in human chromatin structure through genomic segmentationQ35923331
Repetitive elements in imprinted genes.Q36436539
ChromHMM: automating chromatin-state discovery and characterizationQ36625108
Predictive chromatin signatures in the mammalian genomeQ37609802
Genome-wide prediction and analysis of human chromatin boundary elementsQ40395325
The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting.Q54450677
Genome-wide maps of chromatin state in pluripotent and lineage-committed cellsQ24632506
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryoQ24645367
Combinatorial patterns of histone acetylations and methylations in the human genomeQ24647290
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expressionQ24654249
Computational and experimental identification of novel human imprinted genesQ24684684
High-resolution profiling of histone methylations in the human genomeQ27860906
The language of covalent histone modificationsQ27860931
A bivalent chromatin structure marks key developmental genes in embryonic stem cellsQ27860977
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammalsQ28131802
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genomeQ28131828
Histone modifications at human enhancers reflect global cell-type-specific gene expressionQ28238467
Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genesQ28255974
High-resolution mapping and characterization of open chromatin across the genomeQ28266995
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE projectQ28301622
Mapping and analysis of chromatin state dynamics in nine human cell typesQ29547552
Discovery and characterization of chromatin states for systematic annotation of the human genomeQ29614411
ChIP-seq: advantages and challenges of a maturing technologyQ29615336
Identification of functional elements and regulatory circuits by Drosophila modENCODEQ29617551
The NIH Roadmap Epigenomics Mapping ConsortiumQ29619856
The estimation of statistical parameters for local alignment score distributions.Q30977586
ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genomeQ33377433
Prediction of regulatory elements in mammalian genomes using chromatin signatures.Q33394370
Discovery and annotation of functional chromatin signatures in the human genomeQ33516061
Genome-wide prediction of imprinted murine genesQ33841575
Discover regulatory DNA elements using chromatin signatures and artificial neural network.Q33918760
ChIP-Seq: technical considerations for obtaining high-quality dataQ34024936
Pol II and its associated epigenetic marks are present at Pol III-transcribed noncoding RNA genes.Q34048002
A unique H3K4me2 profile marks tissue-specific gene regulationQ34239154
Chromatin signatures of the Drosophila replication programQ34548240
Broad chromosomal domains of histone modification patterns in C. elegansQ34548272
An epigenetic signature for monoallelic olfactory receptor expressionQ34981252
Combinatorial chromatin modification patterns in the human genome revealed by subspace clustering.Q35017822
Comprehensive analysis of the chromatin landscape in Drosophila melanogasterQ35030499
Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functionsQ35145499
A cis-regulatory map of the Drosophila genome.Q35229726
P275copyright licenseCreative Commons Attribution 3.0 UnportedQ14947546
P6216copyright statuscopyrightedQ50423863
P433issue21
P304page(s)10642-10656
P577publication date2012-09-18
P1433published inNucleic Acids ResearchQ135122
P1476titleChromatin signature discovery via histone modification profile alignments
P478volume40

Reverse relations

cites work (P2860)
Q42628216A new method for enhancer prediction based on deep belief network
Q37497396Bivalent histone modifications during tooth development
Q41815695CHANGE POINT ANALYSIS OF HISTONE MODIFICATIONS REVEALS EPIGENETIC BLOCKS LINKING TO PHYSICAL DOMAINS
Q36255027ChARM: Discovery of combinatorial chromatin modification patterns in hepatitis B virus X-transformed mouse liver cancer using association rule mining
Q31154613Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines
Q35668888DELTA: A Distal Enhancer Locating Tool Based on AdaBoost Algorithm and Shape Features of Chromatin Modifications
Q40967119Genome-wide search for Zelda-like chromatin signatures identifies GAF as a pioneer factor in early fly development.
Q58768540HebbPlot: an intelligent tool for learning and visualizing chromatin mark signatures
Q36268669Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types
Q28394080L1 retrotransposons, cancer stem cells and oncogenesis
Q38898009Spectacle: fast chromatin state annotation using spectral learning

Search more.