| scholarly article | Q13442814 |
| P2093 | author name string | Manu | |
| John Reinitz | |||
| Eric Bertolino | |||
| P2860 | cites work | Densely interconnected transcriptional circuits control cell states in human hematopoiesis | Q42654933 |
| Early B cell factor 1 regulates B cell gene networks by activation, repression, and transcription- independent poising of chromatin | Q42826918 | ||
| Computational models for neurogenic gene expression in the Drosophila embryo. | Q46006127 | ||
| Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene | Q46041940 | ||
| Complex interactions between cis-regulatory modules in native conformation are critical for Drosophila snail expression | Q46375759 | ||
| A lymphocyte-specific cellular enhancer is located downstream of the joining region in immunoglobulin heavy chain genes. | Q48397666 | ||
| Gfi1:green fluorescent protein knock-in mutant reveals differential expression and autoregulation of the growth factor independence 1 (Gfi1) gene during lymphocyte development. | Q50799044 | ||
| Transcription factor EBF restricts alternative lineage options and promotes B cell fate commitment independently of Pax5. | Q50876705 | ||
| Predicting expression patterns from regulatory sequence in Drosophila segmentation. | Q51897395 | ||
| Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene. | Q51933279 | ||
| Multilineage transcriptional priming and determination of alternate hematopoietic cell fates. | Q51934822 | ||
| Cooperative and antagonistic interplay between PU.1 and GATA-2 in the specification of myeloid cell fates. | Q52112384 | ||
| Requirement of transcription factor PU.1 in the development of multiple hematopoietic lineages. | Q52214235 | ||
| Identification of consensus patterns in unaligned DNA sequences known to be functionally related. | Q52241864 | ||
| Spacing ensures autonomous expression of different stripe enhancers in the even-skipped promoter. | Q52543590 | ||
| Regulation of B lymphocyte and macrophage development by graded expression of PU.1. | Q55033922 | ||
| Characterization of a “silencer” in yeast: A DNA sequence with properties opposite to those of a transcriptional enhancer | Q57270202 | ||
| Regulation of the PU.1 gene by distal elements | Q57615588 | ||
| The SV40 enhancer can be dissected into multiple segments, each with a different cell type specificity | Q69816464 | ||
| Cooperativity and hierarchical levels of functional organization in the SV40 enhancer | Q69836859 | ||
| An integrated encyclopedia of DNA elements in the human genome | Q22122150 | ||
| Transcriptional control and the role of silencers in transcriptional regulation in eukaryotes | Q24530710 | ||
| TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes | Q24538709 | ||
| Regulation of even-skipped stripe 2 in the Drosophila embryo | Q24555666 | ||
| Gene regulatory networks for development | Q24555733 | ||
| DNA-binding specificities of the GATA transcription factor family | Q24603801 | ||
| Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities | Q24617969 | ||
| Functional cis-regulatory genomics for systems biology | Q24623917 | ||
| Histone H3K27ac separates active from poised enhancers and predicts developmental state | Q24628758 | ||
| DNA Binding by GATA Transcription Factor Suggests Mechanisms of DNA Looping and Long-Range Gene Regulation | Q27675048 | ||
| Transcriptional regulation of erythropoiesis: an affair involving multiple partners | Q28200921 | ||
| E2A proteins are required for proper B cell development and initiation of immunoglobulin gene rearrangements | Q28243194 | ||
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
| Network motifs: theory and experimental approaches | Q29615325 | ||
| Architecture of the human regulatory network derived from ENCODE data | Q29617046 | ||
| JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles | Q30486475 | ||
| Quantitative analysis of the Drosophila segmentation regulatory network using pattern generating potentials | Q33680989 | ||
| Systems analysis of EGF receptor signaling dynamics with microwestern arrays | Q33896605 | ||
| A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate | Q33961160 | ||
| Forcing cells to change lineages | Q34020397 | ||
| Genome-wide quantitative enhancer activity maps identified by STARR-seq | Q34035127 | ||
| Expression of a β-globin gene is enhanced by remote SV40 DNA sequences | Q34055192 | ||
| The Cebpa +37-kb enhancer directs transgene expression to myeloid progenitors and to long-term hematopoietic stem cells | Q34066703 | ||
| PU.1 inhibits the erythroid program by binding to GATA-1 on DNA and creating a repressive chromatin structure | Q34116913 | ||
| Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay | Q34174445 | ||
| Key regulators control distinct transcriptional programmes in blood progenitor and mast cells | Q34208925 | ||
| Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters | Q34276083 | ||
| Hematopoietic development: a balancing act. | Q34353104 | ||
| The eve stripe 2 enhancer employs multiple modes of transcriptional synergy | Q34371968 | ||
| Genomic approaches towards finding cis-regulatory modules in animals | Q38019305 | ||
| Transcription factors: from enhancer binding to developmental control | Q38032407 | ||
| Chromatin and epigenetic features of long-range gene regulation | Q38114411 | ||
| Transcriptional control of early T and B cell developmental choices | Q38182644 | ||
| Gene regulatory networks in the immune system | Q38207348 | ||
| In pursuit of design principles of regulatory sequences | Q38218965 | ||
| Complex interactions between cis-regulatory modules in native conformation are critical for Drosophila snail expression | Q38254349 | ||
| Failure of B-cell differentiation in mice lacking the transcription factor EBF. | Q38293381 | ||
| The zinc finger transcription factor Egr-1 is essential for and restricts differentiation along the macrophage lineage | Q38322297 | ||
| Regulation of interleukin 7-dependent immunoglobulin heavy-chain variable gene rearrangements by transcription factor STAT5. | Q38323522 | ||
| The gap protein knirps mediates both quenching and direct repression in the Drosophila embryo. | Q38355373 | ||
| Transcriptomic profiling identifies a PU.1 regulatory network in macrophages | Q38357142 | ||
| Short-range transcriptional repressors mediate both quenching and direct repression within complex loci in Drosophila | Q38360511 | ||
| Establishing the transcriptional programme for blood: the SCL stem cell enhancer is regulated by a multiprotein complex containing Ets and GATA factors. | Q39647389 | ||
| Combinatorial transcriptional control in blood stem/progenitor cells: genome-wide analysis of ten major transcriptional regulators. | Q39649034 | ||
| Gfi1 expression is controlled by five distinct regulatory regions spread over 100 kilobases, with Scl/Tal1, Gata2, PU.1, Erg, Meis1, and Runx1 acting as upstream regulators in early hematopoietic cells. | Q39697722 | ||
| Transcriptional silencing of the ETS1 oncogene contributes to human granulocytic differentiation | Q39708408 | ||
| Expression of the leukemia oncogene Lmo2 is controlled by an array of tissue-specific elements dispersed over 100 kb and bound by Tal1/Lmo2, Ets, and Gata factors | Q39890524 | ||
| GATA-2 regulates granulocyte-macrophage progenitor cell function | Q39931563 | ||
| Regulation of B cell fate commitment and immunoglobulin heavy-chain gene rearrangements by Ikaros. | Q39970013 | ||
| Bifurcation dynamics in lineage-commitment in bipotent progenitor cells | Q40148843 | ||
| Overexpression of Ets-1 in human hematopoietic progenitor cells blocks erythroid and promotes megakaryocytic differentiation. | Q40350073 | ||
| High level activity of the mouse CCAAT/enhancer binding protein (C/EBP alpha) gene promoter involves autoregulation and several ubiquitous transcription factors | Q40406472 | ||
| Mechanism of eve stripe formation | Q40524528 | ||
| Regulation of macrophage and neutrophil cell fates by the PU.1:C/EBPalpha ratio and granulocyte colony-stimulating factor | Q40637210 | ||
| POU/TBP cooperativity: a mechanism for enhancer action from a distance | Q40709416 | ||
| PU.1 regulates expression of the interleukin-7 receptor in lymphoid progenitors | Q40747831 | ||
| Defective activation and survival of T cells lacking the Ets-1 transcription factor | Q41281933 | ||
| Increased T-cell apoptosis and terminal B-cell differentiation induced by inactivation of the Ets-1 proto-oncogene | Q41281946 | ||
| C/EBPα is required for long-term self-renewal and lineage priming of hematopoietic stem cells and for the maintenance of epigenetic configurations in multipotent progenitors | Q41862786 | ||
| cis-regulatory logic of short-range transcriptional repression in Drosophila melanogaster | Q41881772 | ||
| A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals | Q42020759 | ||
| DNA-binding specificity of GATA family transcription factors | Q42078566 | ||
| The SV40 enhancer contains two distinct levels of organization | Q42117036 | ||
| Cofactor-mediated restriction of GATA-1 chromatin occupancy coordinates lineage-specific gene expression | Q42322690 | ||
| HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis | Q42430189 | ||
| Regulation of two pair-rule stripes by a single enhancer in the Drosophila embryo | Q34378718 | ||
| Haematopoietic cell-fate decisions, chromatin regulation and ikaros | Q34576408 | ||
| Rearrangements of 2.5 kilobases of noncoding DNA from the Drosophila even-skipped locus define predictive rules of genomic cis-regulatory logic | Q34611185 | ||
| Differential requirements for the Ets transcription factor Elf-1 in the development of NKT cells and NK cells | Q34667733 | ||
| Two distinct auto-regulatory loops operate at the PU.1 locus in B cells and myeloid cells | Q34707151 | ||
| GATA-1-dependent transcriptional repression of GATA-2 via disruption of positive autoregulation and domain-wide chromatin remodeling | Q35170832 | ||
| Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo | Q35170843 | ||
| A cis-regulatory map of the Drosophila genome. | Q35229726 | ||
| Immunogenetics. Chromatin state dynamics during blood formation | Q35546671 | ||
| The +37 kb Cebpa Enhancer Is Critical for Cebpa Myeloid Gene Expression and Contains Functional Sites that Bind SCL, GATA2, C/EBPα, PU.1, and Additional Ets Factors | Q35566633 | ||
| PRC2 directly methylates GATA4 and represses its transcriptional activity | Q35674575 | ||
| Evolutionary origins of transcription factor binding site clusters | Q35753857 | ||
| GATA-2 mediated regulation of normal hematopoietic stem/progenitor cell function, myelodysplasia and myeloid leukemia | Q35871343 | ||
| Chromatin occupancy analysis reveals genome-wide GATA factor switching during hematopoiesis | Q35909653 | ||
| Absence of granulocyte colony-stimulating factor signaling and neutrophil development in CCAAT enhancer binding protein alpha-deficient mice | Q35955690 | ||
| Runx1 deletion or dominant inhibition reduces Cebpa transcription via conserved promoter and distal enhancer sites to favor monopoiesis over granulopoiesis | Q35995201 | ||
| Transcriptional repression via antilooping in the Drosophila embryo | Q36066304 | ||
| C/EBPalpha binds and activates the PU.1 distal enhancer to induce monocyte lineage commitment | Q36384868 | ||
| Fos and Jun repress transcription activation by NF-IL6 through association at the basic zipper region | Q36643268 | ||
| ETS target genes: identification of egr1 as a target by RNA differential display and whole genome PCR techniques | Q36650465 | ||
| Temporal mapping of CEBPA and CEBPB binding during liver regeneration reveals dynamic occupancy and specific regulatory codes for homeostatic and cell cycle gene batteries | Q36732435 | ||
| The C/EBP family of transcription factors: a paradigm for interaction between gene expression and proliferation control | Q36893970 | ||
| C/EBPalpha induces PU.1 and interacts with AP-1 and NF-kappaB to regulate myeloid development | Q36899368 | ||
| Transcriptional control of granulocyte and monocyte development | Q36970209 | ||
| Global mapping of protein-DNA interactions in vivo by digital genomic footprinting | Q37157318 | ||
| Endoglin expression in blood and endothelium is differentially regulated by modular assembly of the Ets/Gata hemangioblast code | Q37192871 | ||
| Gene regulatory networks directing myeloid and lymphoid cell fates within the immune system | Q37260838 | ||
| Graded repression of PU.1/Sfpi1 gene transcription by GATA factors regulates hematopoietic cell fate | Q37291657 | ||
| GATA-2 reinforces megakaryocyte development in the absence of GATA-1 | Q37334070 | ||
| Dynamic analysis of gene expression and genome-wide transcription factor binding during lineage specification of multipotent progenitors | Q37426644 | ||
| Positive feedback between PU.1 and the cell cycle controls myeloid differentiation | Q37553529 | ||
| The CCAAT/enhancer (C/EBP) family of basic-leucine zipper (bZIP) transcription factors is a multifaceted highly-regulated system for gene regulation | Q37831697 | ||
| Transcriptional regulation of haematopoietic transcription factors. | Q37846256 | ||
| P433 | issue | 1 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 128-144 | |
| P577 | publication date | 2016-03-02 | |
| P1433 | published in | Developmental Biology | Q3025402 |
| P1476 | title | The analysis of novel distal Cebpa enhancers and silencers using a transcriptional model reveals the complex regulatory logic of hematopoietic lineage specification | |
| P478 | volume | 413 |
| Q41034775 | A sequence level model of an intact locus predicts the location and function of nonadditive enhancers. |
| Q97542507 | Fully interpretable deep learning model of transcriptional control |
| Q92209946 | Robust Normalization of Luciferase Reporter Data |
| Q92632353 | The regulatory control of Cebpa enhancers and silencers in the myeloid and red-blood cell lineages |
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