| scholarly article | Q13442814 |
| review article | Q7318358 |
| P356 | DOI | 10.1016/S0022-2836(02)00109-2 |
| P698 | PubMed publication ID | 12083509 |
| P50 | author | Mark Bender Gerstein | Q6766711 |
| P2093 | author name string | Paul M Harrison | |
| P2860 | cites work | Initial sequencing and analysis of the human genome | Q21045365 |
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| Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 | Q22122385 | ||
| Analysis of the genome sequence of the flowering plant Arabidopsis thaliana | Q22122387 | ||
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| The DNA sequence of human chromosome 21 | Q28145358 | ||
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| How malleable is the eukaryotic genome? Extreme rate of chromosomal rearrangement in the genus Drosophila | Q35031608 | ||
| Gene duplication and the structure of eukaryotic genomes | Q35031751 | ||
| Marginal fitness contributions of nonessential genes in yeast | Q35674564 | ||
| Highly specific protein sequence motifs for genome analysis | Q36252448 | ||
| Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome | Q38668496 | ||
| A question of size: the eukaryotic proteome and the problems in defining it. | Q39535215 | ||
| The SYSTERS protein sequence cluster set. | Q39541174 | ||
| ProtoMap: automatic classification of protein sequences and hierarchy of protein families | Q39541528 | ||
| Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels | Q40414224 | ||
| Classification of transmembrane protein families in the Caenorhabditis elegans genome and identification of human orthologs | Q40414478 | ||
| Frequent alternative splicing of human genes | Q40414677 | ||
| Computational inference of homologous gene structures in the human genome | Q40414965 | ||
| Translation termination efficiency can be regulated in Saccharomyces cerevisiae by environmental stress through a prion-mediated mechanism | Q41874945 | ||
| Pseudogenes, junk DNA, and the dynamics of Rickettsia genomes | Q42648137 | ||
| Genome analysis: Assigning protein coding regions to three-dimensional structures | Q42847014 | ||
| Protein dispensability and rate of evolution | Q46183570 | ||
| Neurobiology of the Caenorhabditis elegans genome. | Q46229602 | ||
| Evolution of genome size: new approaches to an old problem | Q47220744 | ||
| Using the CATH domain database to assign structures and functions to the genome sequences | Q47621006 | ||
| Primate evolution of an olfactory receptor cluster: diversification by gene conversion and recent emergence of pseudogenes | Q47923362 | ||
| High intrinsic rate of DNA loss in Drosophila | Q48057637 | ||
| The gene family encoding the mouse ribosomal protein L32 contains a uniquely expressed intron-containing gene and an unmutated processed gene | Q48390212 | ||
| Gene index analysis of the human genome estimates approximately 120,000 genes. | Q52077979 | ||
| Robustness against mutations in genetic networks of yeast. | Q52169621 | ||
| The frequency distribution of gene family sizes in complete genomes. | Q52243763 | ||
| The evolution of an alpha-esterase pseudogene inactivated in the Drosophila melanogaster lineage. | Q52577664 | ||
| Structural genomics analysis: characteristics of atypical, common, and horizontally transferred folds. | Q52938509 | ||
| EST comparison indicates 38% of human mRNAs contain possible alternative splice forms. | Q52971558 | ||
| A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution. | Q53878162 | ||
| The origins of genomic duplications in Arabidopsis. | Q53900352 | ||
| Analysis of Protein Domain Families inCaenorhabditis elegans | Q56878447 | ||
| Updated map of duplicated regions in the yeast genome | Q57252802 | ||
| Genomic Exploration of the Hemiascomycetous Yeasts: 20. Evolution of gene redundancy compared to Saccharomyces cerevisiae | Q57984478 | ||
| SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments | Q28212954 | ||
| A structural census of the current population of protein sequences | Q28252365 | ||
| Characterization of the yeast transcriptome | Q28302110 | ||
| Molecular evidence for an ancient duplication of the entire yeast genome | Q29547472 | ||
| Comparative genomics of the eukaryotes | Q29547504 | ||
| SGD: Saccharomyces Genome Database | Q29615402 | ||
| Mechanisms of evolution in Rickettsia conorii and R. prowazekii | Q29615837 | ||
| The complete human olfactory subgenome | Q29618326 | ||
| Human LINE retrotransposons generate processed pseudogenes | Q29618327 | ||
| Vertebrate pseudogenes | Q29618328 | ||
| Processed pseudogenes: characteristics and evolution | Q29618329 | ||
| Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins | Q30326247 | ||
| A structural census of genomes: comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structure | Q30429158 | ||
| Estimating the number of protein folds and families from complete genome data | Q30597194 | ||
| Towards a truly integrative biology through the functional genomics of yeast | Q30978871 | ||
| How representative are the known structures of the proteins in a complete genome? A comprehensive structural census | Q31934081 | ||
| MIPS: a database for genomes and protein sequences | Q33612236 | ||
| Yeast genome evolution in the post-genome era. | Q33745262 | ||
| The minimal genome concept | Q33801555 | ||
| Protein-only inheritance in yeast: something to get [PSI+]-ched about | Q33838279 | ||
| Yeast prions and their prion-forming domain | Q33838897 | ||
| The large srh family of chemoreceptor genes in Caenorhabditis nematodes reveals processes of genome evolution involving large duplications and deletions and intron gains and losses | Q33889888 | ||
| Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes | Q33891354 | ||
| Analysis of expressed sequence tags indicates 35,000 human genes | Q33903985 | ||
| Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence | Q33903990 | ||
| Updating the str and srj (stl) families of chemoreceptors in Caenorhabditis nematodes reveals frequent gene movement within and between chromosomes | Q33936879 | ||
| Intraspecies variation in bacterial genomes: the need for a species genome concept | Q34034113 | ||
| A genetic uncertainty problem | Q34080513 | ||
| Horizontal gene transfer among microbial genomes: new insights from complete genome analysis | Q34087782 | ||
| mRNA quality control: Marking the message for life or death. | Q34169710 | ||
| Microbial genomes: dealing with diversity | Q34265067 | ||
| Evolution of immunoglobulin VH pseudogenes in chickens | Q34320057 | ||
| Pseudogenes in ribonuclease evolution: a source of new biomacromolecular function? | Q34375847 | ||
| Two large families of chemoreceptor genes in the nematodes Caenorhabditis elegans and Caenorhabditis briggsae reveal extensive gene duplication, diversification, movement, and intron loss | Q34467653 | ||
| Genes and proteins of Escherichia coli (GenProtEc) | Q34586497 | ||
| Comparison of the complete protein sets of worm and yeast: orthology and divergence | Q34670114 | ||
| P433 | issue | 5 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | protein evolution | Q59870539 |
| P304 | page(s) | 1155-1174 | |
| P577 | publication date | 2002-05-01 | |
| P1433 | published in | Journal of Molecular Biology | Q925779 |
| P1476 | title | Studying genomes through the aeons: protein families, pseudogenes and proteome evolution | |
| P478 | volume | 318 |
| Q47589653 | A new role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene |
| Q58084898 | A phylogenomic study quantifies competing mechanisms for pseudogenization in prokaryotes-The Mycobacterium leprae case |
| Q42611918 | A ‘PolyORFomic’ Analysis of Prokaryote Genomes Using Disabled-homology Filtering Reveals Conserved But Undiscovered Short ORFs |
| Q28258466 | An activated 5' cryptic splice site in the human ALG3 gene generates a premature termination codon insensitive to nonsense-mediated mRNA decay in a new case of congenital disorder of glycosylation type Id (CDG-Id) |
| Q46573165 | An adaptive radiation model for the origin of new gene functions |
| Q28756796 | Analysis of the role of retrotransposition in gene evolution in vertebrates |
| Q28751162 | Assessing the genomic evidence for conserved transcribed pseudogenes under selection |
| Q28655607 | Comparative analysis of pseudogenes across three phyla |
| Q34514275 | Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity |
| Q58965201 | Complicity of gene and pseudogene |
| Q33891354 | Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes |
| Q24801650 | Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes |
| Q40560269 | Connexin43 pseudogene is expressed in tumor cells and inhibits growth |
| Q24594789 | Constraints and plasticity in genome and molecular-phenome evolution |
| Q57736256 | Contributions of genetic and environmental variance in early development of the Antarctic sea urchin Sterechinus neumayeri in response to increased ocean temperature and acidification |
| Q24545852 | Cryptic genetic variation is enriched for potential adaptations |
| Q49749406 | Current Research on Non-Coding Ribonucleic Acid (RNA). |
| Q35619043 | Deletion of REXO1L1 locus in a patient with malabsorption syndrome, growth retardation, and dysmorphic features: a novel recognizable microdeletion syndrome? |
| Q37157270 | Detecting genetic responses to environmental change |
| Q37693692 | Detection of selection utilizing molecular phylogenetics: a possible approach |
| Q44205396 | Digging deep for ancient relics: a survey of protein motifs in the intergenic sequences of four eukaryotic genomes |
| Q28751700 | Endosymbiont DNA in endobacteria-free filarial nematodes indicates ancient horizontal genetic transfer |
| Q36740032 | Evolution of protein families: is it possible to distinguish between domains of life? |
| Q52697858 | Evolutionary dynamics of recently duplicated genes: Selective constraints on diverging paralogs in the Drosophila pseudoobscura genome. |
| Q44075308 | Expansion of signal pathways in the ectomycorrhizal fungus Laccaria bicolor- evolution of nucleotide sequences and expression patterns in families of protein kinases and RAS small GTPases |
| Q38343168 | Fine mapping of the tomato I-3 gene for fusarium wilt resistance and elimination of a co-segregating resistance gene analogue as a candidate for I-3. |
| Q48305528 | Fitness effects of mutation: testing genetic redundancy in Arabidopsis thaliana. |
| Q28755963 | Frame disruptions in human mRNA transcripts, and their relationship with splicing and protein structures |
| Q57483232 | Function Diversity Within Folds and Superfamilies |
| Q33499950 | Fundamental evolutionary limits in ecological traits drive Drosophila species distributions |
| Q28757561 | Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs) |
| Q33252919 | Genetic structure and evolution of the Vps25 family, a yeast ESCRT-II component |
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| Q28757549 | LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics |
| Q28775887 | Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome |
| Q38516723 | Molecular characterization of the immune system: emergence of proteins, processes, and domains. |
| Q80792142 | Molecular genetics: the Emperor's clothes of drug discovery? |
| Q40829967 | Mystery of intron gain |
| Q34131528 | Natural diversity in flowering responses of Arabidopsis thaliana caused by variation in a tandem gene array |
| Q37418706 | Operons |
| Q33562295 | Origin and fate of pseudogenes in Hemiascomycetes: a comparative analysis |
| Q35173702 | Origins and impact of constraints in evolution of gene families |
| Q34365600 | Packaging and reverse transcription of snRNAs by retroviruses may generate pseudogenes |
| Q37557467 | Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts |
| Q52665934 | Positive and negative selection in the beta-esterase gene cluster of the Drosophila melanogaster subgroup. |
| Q39808508 | Protein families and TRIBES in genome sequence space |
| Q35212088 | Protein prenyltransferases: anchor size, pseudogenes and parasites |
| Q28754290 | Pseudofam: the pseudogene families database |
| Q38125345 | Pseudogenes and their composers: delving in the 'debris' of human genome |
| Q22065389 | Pseudogenes: Are They “Junk” or Functional DNA? |
| Q33287490 | Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence |
| Q24810244 | Recognizing the pseudogenes in bacterial genomes |
| Q28742153 | Regions identity between the genome of vertebrates and non-retroviral families of insect viruses |
| Q33924500 | Scaling properties of protein family phylogenies |
| Q28748496 | Segmental duplications in the human genome reveal details of pseudogene formation |
| Q33299609 | Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy |
| Q30400941 | Sodium channel genes and their differential genotypes at the L-to-F kdr locus in the mosquito Culex quinquefasciatus |
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| Q39808770 | The DNA sequence of chromosome I of an African trypanosome: gene content, chromosome organisation, recombination and polymorphism |
| Q21183996 | The GENCODE pseudogene resource |
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