| scholarly article | Q13442814 |
| P2093 | author name string | Brenda L Bass | |
| W Evan Johnson | |||
| Changjin Hong | |||
| David A Nix | |||
| P Joseph Aruscavage | |||
| Joseph M Whipple | |||
| Osama A Youssef | |||
| P2860 | cites work | ViennaRNA Package 2.0 | Q24053233 |
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| RDE-4 preferentially binds long dsRNA and its dimerization is necessary for cleavage of dsRNA to siRNA. | Q24543937 | ||
| A conserved double-stranded RNA-binding domain | Q24563195 | ||
| ADAR1 RNA deaminase limits short interfering RNA efficacy in mammalian cells | Q24598067 | ||
| DICER1 loss and Alu RNA induce age-related macular degeneration via the NLRP3 inflammasome and MyD88 | Q24621930 | ||
| Cell stress and translational inhibitors transiently increase the abundance of mammalian SINE transcripts | Q24629021 | ||
| Specificity of ADAR-mediated RNA editing in newly identified targets | Q24652694 | ||
| RNA editing by adenosine deaminases that act on RNA | Q24679593 | ||
| Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome | Q24806860 | ||
| Trans-splicing and operons in C. elegans | Q27014759 | ||
| Genome sequence of the nematode C. elegans: a platform for investigating biology | Q27860527 | ||
| Pathogen recognition and innate immunity | Q27861084 | ||
| The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs | Q28214585 | ||
| Editing independent effects of ADARs on the miRNA/siRNA pathways | Q28256753 | ||
| The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing | Q28262682 | ||
| Functions and regulation of RNA editing by ADAR deaminases | Q28274610 | ||
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
| Double-stranded RNA-dependent protein kinase links pathogen sensing with stress and metabolic homeostasis | Q28510028 | ||
| TLR-independent and P2X7-dependent signaling mediate Alu RNA-induced NLRP3 inflammasome activation in geographic atrophy | Q28590969 | ||
| ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data | Q29547161 | ||
| BEDTools: a flexible suite of utilities for comparing genomic features | Q29547332 | ||
| Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses | Q29547647 | ||
| lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements | Q29617832 | ||
| Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory genes | Q29618442 | ||
| Systematic identification of abundant A-to-I editing sites in the human transcriptome | Q29619584 | ||
| Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data | Q30699150 | ||
| Widespread RNA editing of embedded alu elements in the human transcriptome | Q31108738 | ||
| A survey of RNA editing in human brain | Q31127917 | ||
| PKR is activated by cellular dsRNAs during mitosis and acts as a mitotic regulator | Q33789589 | ||
| Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs. | Q33799115 | ||
| RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA. | Q34030336 | ||
| The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans | Q34137901 | ||
| Selection for short introns in highly expressed genes | Q34140547 | ||
| Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution | Q34242790 | ||
| Identifying RNA editing sites using RNA sequencing data alone | Q34537341 | ||
| Broad chromosomal domains of histone modification patterns in C. elegans | Q34548272 | ||
| Intron size correlates positively with recombination rate in Caenorhabditis elegans | Q34644075 | ||
| Pausing of reverse transcriptase on retroviral RNA templates is influenced by secondary structures both 5' and 3' of the catalytic site | Q34671582 | ||
| DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration | Q34796058 | ||
| UNAFold: software for nucleic acid folding and hybridization | Q34810481 | ||
| Evaluation of alignment algorithms for discovery and identification of pathogens using RNA-Seq | Q35034904 | ||
| Predicting sites of ADAR editing in double-stranded RNA. | Q35039886 | ||
| Profiling the RNA editomes of wild-type C. elegans and ADAR mutants | Q35049409 | ||
| RNA editing level in the mouse is determined by the genomic repeat repertoire | Q35057501 | ||
| Competition between ADAR and RNAi pathways for an extensive class of RNA targets | Q35301426 | ||
| Monoclonal antibodies to double-stranded RNA as probes of RNA structure in crude nucleic acid extracts | Q35766226 | ||
| Staufen1 regulates diverse classes of mammalian transcripts | Q35837048 | ||
| Genes misregulated in C. elegans deficient in Dicer, RDE-4, or RDE-1 are enriched for innate immunity genes | Q35847224 | ||
| The RNA-editing enzyme ADAR1 controls innate immune responses to RNA. | Q35973393 | ||
| Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs | Q36130858 | ||
| Effects of ADARs on small RNA processing pathways in C. elegans | Q36130861 | ||
| Inverted Alu dsRNA structures do not affect localization but can alter translation efficiency of human mRNAs independent of RNA editing | Q36280659 | ||
| piRNAs can trigger a multigenerational epigenetic memory in the germline of C. elegans | Q36298021 | ||
| A nuclear Argonaute promotes multigenerational epigenetic inheritance and germline immortality | Q36433534 | ||
| Long noncoding RNAs in C. elegans | Q36446242 | ||
| Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage | Q36526566 | ||
| RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans | Q36562027 | ||
| The evolution of sex: empirical insights into the roles of epistasis and drift | Q36710753 | ||
| A starvation-induced noncoding RNA modulates expression of Dicer-regulated genes | Q36844155 | ||
| C. elegans and H. sapiens mRNAs with edited 3' UTRs are present on polysomes | Q36909674 | ||
| Long RNA hairpins that contain inosine are present in Caenorhabditis elegans poly(A)+ RNA | Q37195281 | ||
| Analysis of the constancy of DNA sequences during development and evolution of the nematode Caenorhabditis elegans | Q37321090 | ||
| Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint | Q37359550 | ||
| Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans | Q37454582 | ||
| lincRNAs: genomics, evolution, and mechanisms | Q37584905 | ||
| A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes | Q37614931 | ||
| mRNA-mRNA duplexes that autoelicit Staufen1-mediated mRNA decay | Q37626651 | ||
| Preferential selection of adenosines for modification by double-stranded RNA adenosine deaminase. | Q37639248 | ||
| The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome | Q37649414 | ||
| RNA editing regulates transposon-mediated heterochromatic gene silencing | Q37712036 | ||
| Biology and Mechanisms of Short RNAs in Caenorhabditis elegans | Q38124459 | ||
| Determination of preferential binding sites for anti-dsRNA antibodies on double-stranded RNA by scanning force microscopy | Q42053304 | ||
| A-to-I editing of microRNAs in the mammalian brain increases during development. | Q42256991 | ||
| A spatial and temporal map of C. elegans gene expression | Q42588671 | ||
| Comparative analysis of algorithms for next-generation sequencing read alignment | Q42613622 | ||
| ADARs have effects beyond RNA editing | Q43233413 | ||
| Detection of virus infection in plants and differentiation between coexisting viruses by monoclonal antibodies to double-stranded RNA. | Q45780510 | ||
| Direct evidence of a role for heterochromatin in meiotic chromosome segregation | Q46381949 | ||
| Detection of inosine in messenger RNA by inosine-specific cleavage. | Q48657666 | ||
| Global analysis of RNA secondary structure in two metazoans. | Q52740984 | ||
| Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi | Q59093938 | ||
| Centric heterochromatin and the efficiency of achiasmate disjunction in Drosophila female meiosis | Q71134588 | ||
| Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities | Q73102498 | ||
| P4510 | describes a project that uses | ImageQuant | Q112270642 |
| P433 | issue | 5 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Caenorhabditis elegans | Q91703 |
| RNA sequencing | Q2542347 | ||
| P304 | page(s) | 786-800 | |
| P577 | publication date | 2015-03-24 | |
| P1433 | published in | RNA | Q7277164 |
| P1476 | title | Genome-wide profiling of the C. elegans dsRNAome | |
| P478 | volume | 21 |
| Q60956829 | A-to-I RNA Editing Affects lncRNAs Expression after Heat Shock |
| Q50692214 | A-to-I RNA Editing in the Earliest-Diverging Eumetazoan Phyla. |
| Q47935949 | A-to-I RNA editing - thinking beyond the single nucleotide |
| Q42317731 | A-to-I RNA editing promotes developmental stage-specific gene and lncRNA expression |
| Q39635966 | Adenosine-to-inosine RNA editing by ADAR1 is essential for normal murine erythropoiesis. |
| Q54266223 | C. elegans ADARs antagonize silencing of cellular dsRNAs by the antiviral RNAi pathway. |
| Q93349623 | Computational approaches for detection and quantification of A-to-I RNA-editing |
| Q90006461 | Gene silencing by double-stranded RNA from C. elegans neurons reveals functional mosaicism of RNA interference |
| Q36959149 | Identification of the long, edited dsRNAome of LPS-stimulated immune cells. |
| Q92060510 | Mapping the dsRNA World |
| Q42284536 | Massive A-to-I RNA editing is common across the Metazoa and correlates with dsRNA abundance |
| Q40965059 | Predicting RNA hyper-editing with a novel tool when unambiguous alignment is impossible. |
| Q47174263 | Rewriting the transcriptome: adenosine-to-inosine RNA editing by ADARs |
| Q42379493 | The C. elegans neural editome reveals an ADAR target mRNA required for proper chemotaxis |
| Q47727398 | The Other Face of an Editor: ADAR1 Functions in Editing-Independent Ways. |
| Q91798023 | The majority of A-to-I RNA editing is not required for mammalian homeostasis |
| Q38797973 | The role of RNA editing by ADAR1 in prevention of innate immune sensing of self-RNA. |
| Q50661397 | Trade-off between Transcriptome Plasticity and Genome Evolution in Cephalopods. |
| Q36812716 | Trans and cis factors affecting A-to-I RNA editing efficiency of a noncoding editing target in C. elegans |
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