Mutagenesis of GATA motifs controlling the endoderm regulator elt-2 reveals distinct dominant and secondary cis-regulatory elements

scientific article published on 16 February 2016

Mutagenesis of GATA motifs controlling the endoderm regulator elt-2 reveals distinct dominant and secondary cis-regulatory elements is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.YDBIO.2016.02.013
P932PMC publication ID4814310
P698PubMed publication ID26896592

P50authorScott A RifkinQ52662429
P2093author name stringSharon Tracy
Lawrence Du
P2860cites workWormBase: a comprehensive resource for nematode researchQ24642944
Recovery from an acute infection in C. elegans requires the GATA transcription factor ELT-2Q27313580
Structural analysis of MED-1 reveals unexpected diversity in the mechanism of DNA recognition by GATA-type zinc finger domainsQ27653179
DNA Binding by GATA Transcription Factor Suggests Mechanisms of DNA Looping and Long-Range Gene RegulationQ27675048
Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegansQ27860971
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE projectQ28301622
A Streamlined System for Species Diagnosis in Caenorhabditis (Nematoda: Rhabditidae) with Name Designations for 15 Distinct Biological SpeciesQ29305693
Single-copy insertion of transgenes in Caenorhabditis elegansQ29617695
ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult.Q33396126
Regulation of gene expression via the core promoter and the basal transcriptional machinery.Q33695416
Variability in gene expression underlies incomplete penetranceQ33717980
Description of Caenorhabditis sinica sp. n. (Nematoda: Rhabditidae), a nematode species used in comparative biology for C. elegansQ34465698
Imaging individual mRNA molecules using multiple singly labeled probesQ34833213
Core promoter T-blocks correlate with gene expression levels in C. elegansQ34867860
Endoderm development in Caenorhabditis elegans: the synergistic action of ELT-2 and -7 mediates the specification→differentiation transitionQ35125443
end-1 encodes an apparent GATA factor that specifies the endoderm precursor in Caenorhabditis elegans embryosQ35195151
Reprogramming of early embryonic blastomeres into endodermal progenitors by a Caenorhabditis elegans GATA factorQ35212031
Aro: a machine learning approach to identifying single molecules and estimating classification error in fluorescence microscopy imagesQ35603846
Direct visualization of the elt-2 gut-specific GATA factor binding to a target promoter inside the living Caenorhabditis elegans embryoQ35718550
Analysis of the VPE sequences in the Caenorhabditis elegans vit-2 promoter with extrachromosomal tandem array-containing transgenic strainsQ36643765
Regulation of vitellogenin gene expression in transgenic Caenorhabditis elegans: short sequences required for activation of the vit-2 promoterQ36965113
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The transcription start site landscape of C. elegansQ37061196
Gene transcription is coordinated with, but not dependent on, cell divisions during C. elegans embryonic fate specificationQ37080795
Direct and indirect gene regulation by a life-extending FOXO protein in C. elegans: roles for GATA factors and lipid gene regulatorsQ37671736
An elt-3/elt-5/elt-6 GATA transcription circuit guides aging in C. elegansQ41860377
DAF-16/FOXO and EGL-27/GATA promote developmental growth in response to persistent somatic DNA damageQ42140945
Specific roles for the GATA transcription factors end-1 and end-3 during C. elegans E-lineage development.Q42251598
Maternal deployment of the embryonic SKN-1-->MED-1,2 cell specification pathway in C. elegansQ42598422
TOR signaling couples oxygen sensing to lifespan in C. elegansQ42775625
Transcriptional control and patterning of the pho-1 gene, an essential acid phosphatase expressed in the C. elegans intestineQ45284298
Identifying fluorescently labeled single molecules in image stacks using machine learning.Q45961327
Genetic redundancy in endoderm specification within the genus Caenorhabditis.Q45986590
Restriction of mesendoderm to a single blastomere by the combined action of SKN-1 and a GSK-3beta homolog is mediated by MED-1 and -2 in C. elegansQ46047227
Combinatorial signaling in the specification of unique cell fatesQ46692883
ELT-3: A Caenorhabditis elegans GATA factor expressed in the embryonic epidermis during morphogenesis.Q47068736
The GATA-factor elt-2 is essential for formation of the Caenorhabditis elegans intestineQ47069157
A gut-to-pharynx/tail switch in embryonic expression of the Caenorhabditis elegans ges-1 gene centers on two GATA sequences.Q52206867
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectcis-regulatory elementQ1093165
P304page(s)160-170
P577publication date2016-02-16
P1433published inDevelopmental BiologyQ3025402
P1476titleMutagenesis of GATA motifs controlling the endoderm regulator elt-2 reveals distinct dominant and secondary cis-regulatory elements
P478volume412

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cites work (P2860)
Q45965930Partially compromised specification causes stochastic effects on gut development in C. elegans.
Q41088732Probing and rearranging the transcription factor network controlling the C. elegans endoderm
Q49841698Quantitating transcription factor redundancy: The relative roles of the ELT-2 and ELT-7 GATA factors in the C. elegans endoderm.
Q91975741Two pair-rule responsive enhancers regulate wingless transcription in the Drosophila blastoderm embryo

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