Pol II docking and pausing at growth and stress genes in C. elegans

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Pol II docking and pausing at growth and stress genes in C. elegans is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.CELREP.2014.01.008
P932PMC publication ID4026043
P698PubMed publication ID24485661
P5875ResearchGate publication ID260022786

P50authorNicole KurhanewiczQ56937981
Caitlin L LewarchQ57328409
Colin T WatersQ57328415
P2093author name stringIgor Antoshechkin
John T Lis
Barbara J Meyer
Leighton J Core
L Ryan Baugh
Colin S Maxwell
William S Kruesi
P2860cites workUltrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
Human transcription elongation factor NELF: identification of novel subunits and reconstitution of the functionally active complexQ24296462
DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologsQ24328838
c-Myc regulates transcriptional pause releaseQ24629119
RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryoQ24645367
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 updateQ24650787
RNA Pol II accumulates at promoters of growth genes during developmental arrest.Q38435681
Precise maps of RNA polymerase reveal how promoters direct initiation and pausingQ38606913
Distinct mechanisms of transcriptional pausing orchestrated by GAGA factor and M1BP, a novel transcription factorQ38678210
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cellsQ39546838
Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cellsQ40264121
Metazoan operons accelerate recovery from growth-arrested statesQ41814570
Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS.Q45209737
A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiaeQ48017973
Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.Q51593177
The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged.Q52459657
A novel mode of ecdysozoan growth in Caenorhabditis elegans.Q53673563
Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental responseQ27348311
Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavageQ27641834
Genomic expression programs in the response of yeast cells to environmental changesQ27860823
Nascent transcript sequencing visualizes transcription at nucleotide resolutionQ27930489
Mediator-dependent recruitment of TFIIH modules in preinitiation complexQ27939036
Promoter-associated pausing in promoter architecture and postinitiation transcriptional regulationQ28138307
A highly purified RNA polymerase II elongation control systemQ28216031
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE projectQ28301622
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promotersQ28302903
Regulating RNA polymerase pausing and transcription elongation in embryonic stem cellsQ29392187
Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoansQ29394946
A high-resolution map of active promoters in the human genomeQ29614431
RNA polymerase is poised for activation across the genomeQ29615047
DREME: motif discovery in transcription factor ChIP-seq dataQ33890212
Interactions between DSIF (DRB sensitivity inducing factor), NELF (negative elongation factor), and the Drosophila RNA polymerase II transcription elongation complexQ33953149
A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurementsQ34128521
Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulationQ34346839
Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation.Q34494012
A global analysis of C. elegans trans-splicingQ34548280
FIMO: scanning for occurrences of a given motifQ34729603
Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC).Q35128809
Regulating the regulators: the pervasive effects of Pol II pausing on stimulus-responsive gene networksQ35945067
NELF and DSIF cause promoter proximal pausing on the hsp70 promoter in DrosophilaQ35965503
Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in DrosophilaQ36214878
Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegansQ36285402
Defining the status of RNA polymerase at promotersQ36354477
In vivo transcriptional pausing and cap formation on three Drosophila heat shock genesQ36499506
RNA polymerase II pauses at the 5' end of the transcriptionally induced Drosophila hsp70 geneQ36738468
NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assemblyQ36802956
Global regulation of promoter melting in naive lymphocytesQ36935665
Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation.Q36942407
To grow or not to grow: nutritional control of development during Caenorhabditis elegans L1 arrestQ36972178
The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architecturesQ37061192
Genome-wide location of the coactivator mediator: Binding without activation and transient Cdk8 interaction on DNA.Q38314036
P433issue3
P921main subjectCaenorhabditis elegansQ91703
P304page(s)455-466
P577publication date2014-01-30
P1433published inCell ReportsQ5058165
P1476titlePol II docking and pausing at growth and stress genes in C. elegans
P478volume6

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cites work (P2860)
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Q58754351Nutrient-Driven -GlcNAcylation at Promoters Impacts Genome-Wide RNA Pol II Distribution
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Q35989796Ups and Downs of Poised RNA Polymerase II in B-Cells

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