Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans

scientific article

Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1101/GR.133587.111
P932PMC publication ID3460187
P698PubMed publication ID22539650
P5875ResearchGate publication ID224855975

P50authorJason A BelskyQ42290838
Nicole KurhanewiczQ56937981
P2093author name stringIgor Antoshechkin
L Ryan Baugh
Colin S Maxwell
P2860cites workRNA Pol II accumulates at promoters of growth genes during developmental arrest.Q38435681
DAF-16/FOXO regulates transcription of cki-1/Cip/Kip and repression of lin-4 during C. elegans L1 arrest.Q38444403
Autoregulatory circuit of human rpL3 expression requires hnRNP H1, NPM and KHSRP.Q38535094
Metazoan operons accelerate recovery from growth-arrested statesQ41814570
High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegansQ41864064
Massively parallel sequencing of the polyadenylated transcriptome of C. elegansQ41941343
High qualitative and quantitative conservation of alternative splicing in Caenorhabditis elegans and Caenorhabditis briggsaeQ48081851
Transgenic alternative-splicing reporters reveal tissue-specific expression profiles and regulation mechanisms in vivoQ48083916
Multiple interactions between SRm160 and SR family proteins in enhancer-dependent splicing and development of C. elegans.Q48873078
Ultrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
Differential expression analysis for sequence count dataQ21184103
Bioconductor: open software development for computational biology and bioinformaticsQ21194861
RNA-Seq: a revolutionary tool for transcriptomicsQ24596169
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiationQ24627354
The microRNA.org resource: targets and expressionQ24650094
TopHat: discovering splice junctions with RNA-SeqQ24655505
Alternative splicing and nonsense-mediated mRNA decay regulate mammalian ribosomal gene expressionQ24811071
TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1.Q27933425
Ribosomal protein L32 of Saccharomyces cerevisiae influences both the splicing of its own transcript and the processing of rRNA.Q27934408
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE projectQ28301622
The SR protein family of splicing factors: master regulators of gene expressionQ29619935
Alternative splicing regulation during C. elegans development: splicing factors as regulated targetsQ33331560
Temperature-modulated alternative splicing and promoter use in the Circadian clock gene frequencyQ34148145
Detecting differential usage of exons from RNA-seq dataQ34313279
A global analysis of C. elegans trans-splicingQ34548280
Genome-wide analysis of alternative splicing in Caenorhabditis elegansQ34548324
SC35 autoregulates its expression by promoting splicing events that destabilize its mRNAsQ34583829
Identification and characterization of RED120: a conserved PWI domain protein with links to splicing and 3'-end formation.Q34636266
The Caenorhabditis elegans dauer larva: developmental effects of pheromone, food, and temperatureQ34712350
Functional characterization of SR and SR-related genes in Caenorhabditis elegansQ35008078
Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decayQ35677362
smg mutants affect the expression of alternatively spliced SR protein mRNAs in Caenorhabditis elegansQ36574846
Global analysis of alternative splicing uncovers developmental regulation of nonsense-mediated decay in C. elegansQ37344523
A role for SR proteins in plant stress responsesQ37831777
P433issue10
P407language of work or nameEnglishQ1860
P921main subjectCaenorhabditis elegansQ91703
P304page(s)1920-1929
P577publication date2012-04-26
P1433published inGenome ResearchQ5533485
P1476titleNutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans
P478volume22

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cites work (P2860)
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Q57293500Food perception without ingestion leads to metabolic changes and irreversible developmental arrest in C. elegans
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Q30857408IUTA: a tool for effectively detecting differential isoform usage from RNA-Seq data.
Q50641056Ins-4 and daf-28 function redundantly to regulate C. elegans L1 arrest.
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Q90237766SL-quant: a fast and flexible pipeline to quantify spliced leader trans-splicing events from RNA-seq data
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Q27309551dbl-1/TGF-β and daf-12/NHR Signaling Mediate Cell-Nonautonomous Effects of daf-16/FOXO on Starvation-Induced Developmental Arrest

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