Differential expression analysis for sequence count data (scientific article)

cites work (P2860)

Q55162936	"Tuberculosis in advanced HIV infection is associated with increased expression of IFNγ and its downstream targets".
Q28646072	(Per)chlorate-reducing bacteria can utilize aerobic and anaerobic pathways of aromatic degradation with (per)chlorate as an electron acceptor
Q35208999	(Post-)genomics approaches in fungal research
Q47933631	* Glioblastoma Exosomes for Therapeutic Angiogenesis in Peripheral Ischemia
Q64928436	16S rRNA deep sequencing for the characterization of healthy human pharyngeal microbiome.
Q34574897	24 hours in the life of HIV-1 in a T cell line
Q31167209	3D: diversity, dynamics, differential testing - a proposed pipeline for analysis of next-generation sequencing T cell repertoire data
Q92740701	5-hydroxymethylcytosine and gene activity in mouse intestinal differentiation
Q47168582	A 16-gene signature predicting prognosis of patients with oral tongue squamous cell carcinoma
Q34992791	A 2.5-kilobase deletion containing a cluster of nine microRNAs in the latency-associated-transcript locus of the pseudorabies virus affects the host response of porcine trigeminal ganglia during established latency.
Q30822033	A Bayesian Semi-parametric Approach for the Differential Analysis of Sequence Counts Data.
Q55322320	A Bayesian Semiparametric Regression Model for Joint Analysis of Microbiome Data.
Q30762281	A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data
Q47036929	A Bayesian mixture model for clustering and selection of feature occurrence rates under mean constraints
Q47558385	A Bayesian model selection approach for identifying differentially expressed transcripts from RNA sequencing data
Q52721168	A Beginner's Guide to Analysis of RNA-seq Data.
Q37512945	A Bioequivalence Test by the Direct Comparison of Concentration-versus-Time Curves Using Local Polynomial Smoothers.
Q58735410	A Bioinformatics Pipeline for the Analysis and Target Prediction of RNA Effectors in Bidirectional Communication During Plant-Microbe Interactions
Q38446528	A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants
Q31161072	A Combined PLS and Negative Binomial Regression Model for Inferring Association Networks from Next-generation Sequencing Count Data
Q39358609	A Comparison of Methods for RNA-Seq Differential Expression Analysis and a New Empirical Bayes Approach
Q36014171	A Comprehensive Analysis of miRNA/isomiR Expression with Gender Difference
Q88294667	A Consistent and Predictable Commercial Broiler Chicken Bacterial Microbiota in Antibiotic-Free Production Displays Strong Correlations with Performance
Q35911601	A De novo Transcriptomic Approach to Identify Flavonoids and Anthocyanins "Switch-Off" in Olive (Olea europaea L.) Drupes at Different Stages of Maturation
Q38860040	A Direct Test of Selection in Cell Populations Using the Diversity in Gene Expression within Tumors
Q31027575	A Flexible, Efficient Binomial Mixed Model for Identifying Differential DNA Methylation in Bisulfite Sequencing Data
Q88573522	A Fungal P450 Enzyme from Thanatephorus cucumeris with Steroid Hydroxylation Capabilities
Q33877341	A Generalized Linear Model for Decomposing Cis-regulatory, Parent-of-Origin, and Maternal Effects on Allele-Specific Gene Expression
Q49289711	A Global View of Transcriptome Dynamics During Male Floral Bud Development in Populus tomentosa.
Q39164177	A Gpr120-selective agonist improves insulin resistance and chronic inflammation in obese mice
Q55379249	A Hierarchical Framework for State-Space Matrix Inference and Clustering.
Q42324506	A Highly Expressed High-Molecular-Weight S-Layer Complex of Pelosinus sp. Strain UFO1 Binds Uranium.
Q35946779	A Human-Specific α7-Nicotinic Acetylcholine Receptor Gene in Human Leukocytes: Identification, Regulation and the Consequences of CHRFAM7A Expression
Q31153938	A Hypothesis Testing Based Method for Normalization and Differential Expression Analysis of RNA-Seq Data
Q36972722	A KRAB/KAP1-miRNA cascade regulates erythropoiesis through stage-specific control of mitophagy
Q36917344	A KRAB/KAP1-miRNA cascade regulates erythropoiesis through stage-specific control of mitophagy.
Q40551543	A Kelch Domain-Containing F-Box Coding Gene Negatively Regulates Flavonoid Accumulation in Muskmelon.
Q36027599	A Laser Dissection-RNAseq Analysis Highlights the Activation of Cytokinin Pathways by Nod Factors in the Medicago truncatula Root Epidermis
Q31050289	A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
Q35631371	A Method for Determining Taxonomical Contributions to Group Differences in Microbiomic Investigations
Q50196912	A Modular Platform for Differentiation of Human PSCs into All Major Ectodermal Lineages.
Q36463958	A Mouse Model of Targeted Musashi1 Expression in Whole Intestinal Epithelium Suggests Regulatory Roles in Cell Cycle and Stemness
Q37223502	A Multi-Serotype Approach Clarifies the Catabolite Control Protein A Regulon in the Major Human Pathogen Group A Streptococcus
Q92905126	A Multiscale Map of the Stem Cell State in Pancreatic Adenocarcinoma
Q60300306	A NAC transcription factor, NOR-like1, is a new positive regulator of tomato fruit ripening
Q91329991	A NF-ĸB-Activin A signaling axis enhances prostate cancer metastasis
Q38616639	A Normalization-Free and Nonparametric Method Sharpens Large-Scale Transcriptome Analysis and Reveals Common Gene Alteration Patterns in Cancers.
Q92571529	A Novel Gene Underlies Bleomycin-Response Variation in Caenorhabditis elegans
Q40179059	A Novel In Vitro Human Granuloma Model of Sarcoidosis and Latent TB Infection
Q101562761	A Novel Locus and Candidate Gene for Familial Developmental Dyslexia on Chromosome 4q
Q36150500	A Plasmodium calcium-dependent protein kinase controls zygote development and transmission by translationally activating repressed mRNAs
Q36095561	A Pleiotropic Missense Variant in SLC39A8 Is Associated With Crohn's Disease and Human Gut Microbiome Composition
Q37162989	A Population of Deletion Mutants and an Integrated Mapping and Exome-seq Pipeline for Gene Discovery in Maize
Q64111729	A Prediction Model for Preoperative Risk Assessment in Endometrial Cancer Utilizing Clinical and Molecular Variables
Q93081525	A Radiogenomic Approach for Decoding Molecular Mechanisms Underlying Tumor Progression in Prostate Cancer
Q39666452	A Role for the Chromatin-Remodeling Factor BAZ1A in Neurodevelopment.
Q92752577	A SNP Mutation of SiCRC Regulates Seed Number Per Capsule and Capsule Length of cs1 Mutant in Sesame
Q64071383	A Secreted RNA Binding Protein Forms RNA-Stabilizing Granules in the Honeybee Royal Jelly
Q31124737	A Semi-parametric Bayesian Approach for Differential Expression Analysis of RNA-seq Data
Q37389071	A Single-Cell Transcriptome Atlas of the Human Pancreas
Q42146791	A Small Number of Low-abundance Bacteria Dominate Plant Species-specific Responses during Rhizosphere Colonization.
Q92477581	A Spontaneous Aggressive ERα+ Mammary Tumor Model Is Driven by Kras Activation
Q31012249	A Systematic Evaluation of Feature Selection and Classification Algorithms Using Simulated and Real miRNA Sequencing Data
Q58578378	A Systems Analysis With "Simplified Source-Sink Model" Reveals Metabolic Reprogramming in a Pair of Source-to-Sink Organs During Early Fruit Development in Tomato by LED Light Treatments
Q91452616	A Tppp3+Pdgfra+ tendon stem cell population contributes to regeneration and reveals a shared role for PDGF signalling in regeneration and fibrosis
Q90092970	A Transcriptome Analysis: Various Reasons of Adverse Pregnancy Outcomes Caused by Acute Toxoplasma gondii Infection
Q41684674	A Transcriptome Approach Toward Understanding Fruit Softening in Persimmon
Q56985265	A Transcriptomic Analysis of the Development of Skeletal Muscle Atrophy in Cancer-Cachexia in Tumor-Bearing Mice
Q46253771	A Transcriptomic Approach to Identify Novel Drug Efflux Pumps in Bacteria
Q36324707	A Transcriptomic Study of Maternal Thyroid Adaptation to Pregnancy in Rats
Q93154833	A Transcriptomic Study of the Tail Fat Deposition in Two Types of Hulun Buir Sheep According to Tail Size and Sex
Q89557150	A Unified Model for Joint Normalization and Differential Gene Expression Detection in RNA-Seq Data
Q88294881	A Y-Encoded Suppressor of Feminization Arose via Lineage-Specific Duplication of a Cytokinin Response Regulator in Kiwifruit
Q41533951	A Zap70-dependent feedback circuit is essential for efficient selection of CD4 lineage thymocytes
Q35690119	A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads
Q47884138	A brief review of single-cell transcriptomic technologies
Q46297098	A broken promise: microbiome differential abundance methods do not control the false discovery rate
Q34714547	A burst of ABC genes in the genome of the polyphagous spider mite Tetranychus urticae.
Q37383599	A case study of an integrative genomic and experimental therapeutic approach for rare tumors: identification of vulnerabilities in a pediatric poorly differentiated carcinoma.
Q36203878	A catalogue of novel bovine long noncoding RNA across 18 tissues
Q35574894	A cluster of noncoding RNAs activates the ESR1 locus during breast cancer adaptation.
Q92104427	A co-expression network for differentially expressed genes in bladder cancer and a risk score model for predicting survival
Q58796166	A combined approach with gene-wise normalization improves the analysis of RNA-seq data in human breast cancer subtypes
Q90574790	A combined miRNA-piRNA signature to detect Alzheimer's disease
Q58706688	A comparative analysis of library prep approaches for sequencing low input translatome samples
Q38908255	A comparative analytical assay of gene regulatory networks inferred using microarray and RNA-seq datasets
Q36263951	A comparative study of small RNAs in Toxoplasma gondii of distinct genotypes
Q30842440	A comparative study of techniques for differential expression analysis on RNA-Seq data
Q94466847	A comparison between SOLiD 5500XLand Ion Torrent PGM-derived miRNA expression profiles in two breast cell lines
Q33614058	A comparison of RNA-seq and exon arrays for whole genome transcription profiling of the L5 spinal nerve transection model of neuropathic pain in the rat.
Q27331419	A comparison of brain gene expression levels in domesticated and wild animals
Q34045234	A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs
Q48353795	A comparison of honeybee (Apis mellifera) queen, worker and drone larvae by RNA-Seq.
Q34333243	A comparison of methods for differential expression analysis of RNA-seq data
Q36359625	A comparison of per sample global scaling and per gene normalization methods for differential expression analysis of RNA-seq data.
Q26822918	A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data
Q64109162	A complete statistical model for calibration of RNA-seq counts using external spike-ins and maximum likelihood theory
Q57177005	A comprehensive analysis of the Korean fir (Abies koreana) genes expressed under heat stress using transcriptome analysis
Q36368819	A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae
Q35576206	A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification
Q103806230	A comprehensive library of human transcription factors for cell fate engineering
Q34634867	A comprehensive proteomic view of responses of A549 type II alveolar epithelial cells to human respiratory syncytial virus infection
Q38612538	A comprehensive simulation study on classification of RNA-Seq data.
Q37854720	A comprehensive transcriptional portrait of human cancer cell lines
Q33628916	A computational systems approach identifies synergistic specification genes that facilitate lineage conversion to prostate tissue
Q48773384	A context-specific cardiac β-catenin and GATA4 interaction influences TCF7L2 occupancy and remodels chromatin driving disease progression in the adult heart.
Q34241762	A cross-species analysis of microRNAs in the developing avian face.
Q35602955	A de novo floral transcriptome reveals clues into Phalaenopsis orchid flower development
Q98196680	A deep learning model to predict RNA-Seq expression of tumours from whole slide images
Q90367667	A deletion in Eml1 leads to bilateral subcortical heterotopia in the tish rat
Q35141451	A detailed analysis of next generation sequencing reads of microRNA expression in Barrett's esophagus: absolute versus relative quantification
Q42773651	A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.).
Q41954431	A dynamic periplasmic electron transfer network enables respiratory flexibility beyond a thermodynamic regulatory regime
Q58544863	A dynamic transcriptomic atlas of cytokine induced killer cells
Q34630268	A family of variable immunoglobulin and lectin domain containing molecules in the snail Biomphalaria glabrata
Q64070828	A fast and efficient count-based matrix factorization method for detecting cell types from single-cell RNAseq data
Q90207879	A field guide for the compositional analysis of any-omics data
Q64883162	A five lncRNA signature for prognosis prediction in hepatocellular carcinoma.
Q30863732	A flexible Bayesian method for detecting allelic imbalance in RNA-seq data
Q30662709	A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments.
Q89807403	A framework for transcriptome-wide association studies in breast cancer in diverse study populations
Q91723465	A functional genetic screen defines the AKT-induced senescence signaling network
Q34245573	A generalized linear model for peak calling in ChIP-Seq data
Q28388359	A genome-wide approach for detecting novel insertion-deletion variants of mid-range size
Q35848461	A genome-wide identification of the miRNAome in response to salinity stress in date palm (Phoenix dactylifera L.).
Q28600970	A genome-wide search for epigenetically [corrected] regulated genes in zebra finch using MethylCap-seq and RNA-seq
Q28535217	A genome-wide survey of highly expressed non-coding RNAs and biological validation of selected candidates in Agrobacterium tumefaciens
Q38491083	A global view of transcriptome dynamics during flower development in chickpea by deep sequencing
Q64234140	A gossypol biosynthetic intermediate disturbs plant defence response
Q92914936	A graph-based algorithm for RNA-seq data normalization
Q64109957	A halotolerant growth promoting rhizobacteria triggers induced systemic resistance in plants and defends against fungal infection
Q30681834	A hierarchical poisson log-normal model for network inference from RNA sequencing data
Q30489744	A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA-seq profiling
Q34529905	A house finch (Haemorhous mexicanus) spleen transcriptome reveals intra- and interspecific patterns of gene expression, alternative splicing and genetic diversity in passerines
Q70906629	A human liver cell atlas reveals heterogeneity and epithelial progenitors
Q35655593	A knowledge base for Vitis vinifera functional analysis.
Q64068751	A likelihood ratio test for changes in homeolog expression bias
Q28509769	A long noncoding RNA mediates both activation and repression of immune response genes
Q33780401	A loose endosperm structure of wheat seed produced under low nitrogen level promotes early germination by accelerating water uptake
Q43061380	A map of human circular RNAs in clinically relevant tissues.
Q55078959	A map of the PGC-1α- and NT-PGC-1α-regulated transcriptional network in brown adipose tissue.
Q36888933	A mechanism for expansion of regulatory T-cell repertoire and its role in self-tolerance
Q42358727	A mex3 homolog is required for differentiation during planarian stem cell lineage development
Q35237480	A miRNA signature of chemoresistant mesenchymal phenotype identifies novel molecular targets associated with advanced pancreatic cancer
Q39305386	A microRNA regulates the response of corals to thermal stress.
Q30838334	A mixture modeling framework for differential analysis of high-throughput data
Q30619797	A model based criterion for gene expression calls using RNA-seq data.
Q36251962	A model of breast cancer heterogeneity reveals vascular mimicry as a driver of metastasis
Q31004690	A model selection criterion for model-based clustering of annotated gene expression data
Q35120113	A model system for studying the transcriptomic and physiological changes associated with mammalian host-adaptation by Leptospira interrogans serovar Copenhageni
Q47115785	A molecular roadmap of the AGM region reveals BMPER as a novel regulator of HSC maturation
Q44973683	A multi-Poisson dynamic mixture model to cluster developmental patterns of gene expression by RNA-seq
Q57290393	A multi-component neuronal response encodes the larval decision to pupariate upon amino acid starvation
Q39710865	A multi-model statistical approach for proteomic spectral count quantitation
Q39448249	A multifaceted study of Pseudomonas aeruginosa shutdown by virulent podovirus LUZ19.
Q91932046	A multivariate Poisson-log normal mixture model for clustering transcriptome sequencing data
Q33580224	A murine preclinical syngeneic transplantation model for breast cancer precision medicine.
Q47342245	A mutational comparison of adult and adolescent and young adult (AYA) colon cancer.
Q90169827	A nano-liposome formulation of the PARP inhibitor Talazoparib enhances treatment efficacy and modulates immune cell populations in mammary tumors of BRCA-deficient mice
Q35546675	A negative feedback loop of transcription factors specifies alternative dendritic cell chromatin States.
Q35679367	A nested parallel experiment demonstrates differences in intensity-dependence between RNA-seq and microarrays
Q34213485	A new dataset of spermatogenic vs. oogenic transcriptomes in the nematode Caenorhabditis elegans
Q34419135	A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data
Q41941654	A next-generation sequencing approach to study the transcriptomic changes during the differentiation of physarum at the single-cell level.
Q58697388	A nonalcoholic fatty liver disease model in human induced pluripotent stem cell-derived hepatocytes, created by endoplasmic reticulum stress-induced steatosis
Q34219998	A normalization strategy for comparing tag count data
Q34776847	A note on an exon-based strategy to identify differentially expressed genes in RNA-seq experiments
Q48225815	A novel LSD1 inhibitor NCD38 ameliorates MDS-related leukemia with complex karyotype by attenuating leukemia programs via activating super-enhancers.
Q35641780	A novel chitin binding crayfish molar tooth protein with elasticity properties
Q38838226	A novel mitosis-associated lncRNA, MA-linc1, is required for cell cycle progression and sensitizes cancer cells to Paclitaxel
Q30395194	A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures
Q36279144	A novel point mutation in RpoB improves osmotolerance and succinic acid production in Escherichia coli
Q33558016	A novel role for transcription-coupled nucleotide excision repair for the in vivo repair of 3,N4-ethenocytosine
Q34776341	A novel strategy to increase the proliferative potential of adult human β-cells while maintaining their differentiated phenotype.
Q34074336	A parametric model fitting time to first event for overdispersed data: application to time to relapse in multiple sclerosis
Q90840783	A patient-specific induced pluripotent stem cell model for West syndrome caused by ST3GAL3 deficiency
Q36280857	A phylogenetic transform enhances analysis of compositional microbiota data
Q57463243	A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.)
Q36018628	A piRNA-like small RNA interacts with and modulates p-ERM proteins in human somatic cells.
Q34817633	A plant-specific HUA2-LIKE (HULK) gene family in Arabidopsis thaliana is essential for development
Q39492014	A polydnaviral genome of Microplitis bicoloratus bracovirus and molecular interactions between the host and virus involved in NF-κB signaling
Q37615952	A porcine gluteus medius muscle genome-wide transcriptome analysis: dietary effects of omega-6 and omega-3 fatty acids on biological mechanisms
Q33979220	A powerful and flexible approach to the analysis of RNA sequence count data
Q35609999	A powerful statistical approach for large-scale differential transcription analysis.
Q34045862	A predictive computational framework for direct reprogramming between human cell types
Q56338755	A primer to metabarcoding surveys of Antarctic terrestrial biodiversity
Q90170176	A progesterone biosensor derived from microbial screening
Q92157400	A protocol to evaluate RNA sequencing normalization methods
Q49185499	A prototypical non-malignant epithelial model to study genome dynamics and concurrently monitor micro-RNAs and proteins in situ during oncogene-induced senescence.
Q90142084	A putative AGO protein, OsAGO17, positively regulates grain size and grain weight through OsmiR397b in rice
Q41987294	A putative Vibrio cholerae two-component system controls a conserved periplasmic protein in response to the antimicrobial peptide polymyxin B.
Q33603124	A putative regulatory genetic locus modulates virulence in the pathogen Leptospira interrogans
Q51418670	A randomized approach to speed up the analysis of large-scale read-count data in the application of CNV detection.
Q91598245	A reciprocal feedback between the PDZ binding kinase and androgen receptor drives prostate cancer
Q90134963	A repeated molecular architecture across thalamic pathways
Q31027225	A resource of ribosomal RNA-depleted RNA-Seq data from different normal adult and fetal human tissues
Q90262099	A ribosomal protein S5 isoform is essential for oogenesis and interacts with distinct RNAs in Drosophila melanogaster
Q36028352	A robust (re-)annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related species.
Q35829702	A robust approach for identifying differentially abundant features in metagenomic samples
Q90911003	A secreted microRNA disrupts autophagy in distinct tissues of Caenorhabditis elegans upon ageing
Q35906175	A semi-parametric statistical model for integrating gene expression profiles across different platforms
Q90617719	A sensor kinase controls turgor-driven plant infection by the rice blast fungus
Q36183128	A set of genes conserved in sequence and expression traces back the establishment of multicellularity in social amoebae.
Q35389826	A shortcut for multiple testing on the directed acyclic graph of gene ontology
Q36140204	A simulation framework for correlated count data of features subsets in high-throughput sequencing or proteomics experiments.
Q89864886	A single cell transcriptome atlas of the developing zebrafish hindbrain
Q34419984	A single female-specific piRNA is the primary determiner of sex in the silkworm
Q50047852	A six-long non-coding RNA signature predicts prognosis in melanoma patients.
Q60300534	A six-mRNA prognostic model to predict survival in head and neck squamous cell carcinoma
Q35242803	A skellam model to identify differential patterns of gene expression induced by environmental signals
Q47593568	A sparse differential clustering algorithm for tracing cell type changes via single-cell RNA-sequencing data.
Q89601874	A specific prelimbic-nucleus accumbens pathway controls resilience versus vulnerability to food addiction
Q37367253	A statistical approach for identifying differential distributions in single-cell RNA-seq experiments
Q36045208	A statistical method for detecting differentially expressed SNVs based on next-generation RNA-seq data.
Q38708251	A stemness-related ZEB1-MSRB3 axis governs cellular pliancy and breast cancer genome stability.
Q31146507	A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor.
Q28071394	A survey of best practices for RNA-seq data analysis
Q46263832	A survey of software tools for microRNA discovery and characterization using RNA-seq
Q38942253	A sustained deficiency of mitochondrial respiratory complex III induces an apoptotic cell death through the p53-mediated inhibition of pro-survival activities of the activating transcription factor 4.
Q38958833	A sweet story: Bean pod mottle virus transmission dynamics by Mexican bean beetles (Epilachna varivestis)
Q30940449	A system level analysis of gastric cancer across tumor stages with RNA-seq data
Q90662710	A systematic evaluation of single cell RNA-seq analysis pipelines
Q39249330	A systems approach to a spatio-temporal understanding of the drought stress response in maize.
Q46469402	A systems biology approach reveals major metabolic changes in the thermoacidophilic archaeon Sulfolobus solfataricus in response to the carbon source L-fucose versus D-glucose.
Q35192110	A systems biology approach to the analysis of subset-specific responses to lipopolysaccharide in dendritic cells.
Q33588427	A systems-level approach reveals new gene regulatory modules in the developing ear
Q40959443	A tail of two voltages: Proteomic comparison of the three electric organs of the electric eel
Q40672654	A targeted immunomic approach identifies diagnostic antigens in the human pathogen Babesia microti.
Q33574854	A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress
Q90093512	A temporal gene expression map of Chrysanthemum leaves infected with Alternaria alternata reveals different stages of defense mechanisms
Q89100184	A three‑lncRNA signature for prognosis prediction of acute myeloid leukemia in patients
Q38849026	A time series transcriptome analysis of cassava (Manihot esculenta Crantz) varieties challenged with Ugandan cassava brown streak virus
Q37611447	A tissue checkpoint regulates type 2 immunity.
Q47113021	A transcribed enhancer dictates mesendoderm specification in pluripotency
Q91782910	A transcriptional and functional analysis of heat hardening in two invasive fruit fly species, Bactrocera dorsalis and Bactrocera correcta
Q36125919	A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis
Q34414646	A transcriptome analysis suggests apoptosis-related signaling pathways in hemocytes of Spodoptera litura after parasitization by Microplitis bicoloratus
Q28649841	A transcriptomic analysis of Neurospora crassa using five major crop residues and the novel role of the sporulation regulator rca-1 in lignocellulase production
Q38829978	A transcriptomic analysis of the effect of genistein on Sinorhizobium fredii HH103 reveals novel rhizobial genes putatively involved in symbiosis
Q31144501	A transcriptomic approach to elucidate the physiological significance of human cytochrome P450 2S1 in bronchial epithelial cells
Q59799924	A transcriptomic snapshot of early molecular communication between Pasteuria penetrans and Meloidogyne incognita
Q90049215	A transcriptomic view of the ability of nascent hexaploid wheat to tolerate aneuploidy
Q36466883	A transgenerational role of the germline nuclear RNAi pathway in repressing heat stress-induced transcriptional activation in C. elegans
Q46510506	A triple helix-loop-helix/basic helix-loop-helix cascade controls cell elongation downstream of multiple hormonal and environmental signaling pathways in Arabidopsis.
Q31096681	A two-part mixed-effects model for analyzing longitudinal microbiome compositional data
Q34880619	A two-stage statistical procedure for feature selection and comparison in functional analysis of metagenomes.
Q31138664	A two-step integrated approach to detect differentially expressed genes in RNA-Seq data
Q36349016	A unique missense allele of BAF155, a core BAF chromatin remodeling complex protein, causes neural tube closure defects in mice
Q37383806	A whole-genome analysis of a transgenic rice seed-based edible vaccine against cedar pollen allergy
Q89369054	A workflow for simplified analysis of ATAC-cap-seq data in R
Q34668744	A zebrafish high throughput screening system used for Staphylococcus epidermidis infection marker discovery
Q60956829	A-to-I RNA Editing Affects lncRNAs Expression after Heat Shock
Q42317731	A-to-I RNA editing promotes developmental stage-specific gene and lncRNA expression
Q40120473	A1S_2811, a CheA/Y-like hybrid two-component regulator from Acinetobacter baumannii ATCC17978, is involved in surface motility and biofilm formation in this bacterium
Q36094224	ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
Q35537937	ACTN4 and the pathways associated with cell motility and adhesion contribute to the process of lung cancer metastasis to the brain
Q42370132	AKAP95 regulates splicing through scaffolding RNAs and RNA processing factors.
Q27309262	ALDB: a domestic-animal long noncoding RNA database
Q47253085	ALKBH5-dependent m6A demethylation controls splicing and stability of long 3'-UTR mRNAs in male germ cells
Q35743360	ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass).
Q37609639	ALS-associated mutation FUS-R521C causes DNA damage and RNA splicing defects
Q34812367	ANOVA-like differential expression (ALDEx) analysis for mixed population RNA-Seq
Q93147490	APRIL Induces a Novel Subset of IgA+ Regulatory B Cells That Suppress Inflammation via Expression of IL-10 and PD-L1
Q88670867	ARID1A mutation sensitizes most ovarian clear cell carcinomas to BET inhibitors
Q34938287	ARLTS1 and prostate cancer risk--analysis of expression and regulation
Q39003064	ASXL1 interacts with the cohesin complex to maintain chromatid separation and gene expression for normal hematopoiesis
Q64101310	ASYMMETRIC LEAVES1 and REVOLUTA are the key regulatory genes associated with pitcher development in Nepenthes khasiana
Q34430701	ATP-dependent chromatin remodeling shapes the long noncoding RNA landscape
Q54977196	ATR inhibition controls aggressive prostate tumors deficient in Y-linked histone demethylase KDM5D.
Q30714199	ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants
Q92855029	Aberrant MicroRNA Expression and Its Implications for Uveal Melanoma Metastasis
Q92572423	Aberrant NFATc1 signaling counteracts TGFβ-mediated growth arrest and apoptosis induction in pancreatic cancer progression
Q34332444	Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders
Q35061945	Abiotic and biotic stressors causing equivalent mortality induce highly variable transcriptional responses in the soybean aphid.
Q89972140	Abnormal keratinocyte differentiation in the nasal planum of Labrador Retrievers with hereditary nasal parakeratosis (HNPK)
Q42688869	Abundance estimation and differential testing on strain level in metagenomics data.
Q33923506	Accelerated evolution of morph-biased genes in pea aphids.
Q33669938	Acclimation of a low iron adapted Ostreococcus strain to iron limitation through cell biomass lowering.
Q42774165	Accounting for technical noise in single-cell RNA-seq experiments.
Q36438178	Accumulation of differentiating intestinal stem cell progenies drives tumorigenesis
Q41849809	Accuracy of microRNA discovery pipelines in non-model organisms using closely related species genomes
Q91938014	Accurate Classification of Differential Expression Patterns in a Bayesian Framework With Robust Normalization for Multi-Group RNA-Seq Count Data
Q59210543	Accurate Microbial Genome Annotation Using an Integrated and User-Friendly Environment for Community Expertise of Gene Functions: The MicroScope Platform
Q34667568	Accurate detection of differential RNA processing
Q50058773	Acetyl-CoA carboxylase 1 regulates endothelial cell migration by shifting the phospholipid composition.
Q45063009	Acid Evolution of Escherichia coli K-12 Eliminates Amino Acid Decarboxylases and Reregulates Catabolism.
Q33899575	Acinetobacter baumannii response to host-mediated zinc limitation requires the transcriptional regulator Zur
Q48333206	Acquired Tamoxifen Resistance in MCF-7 Breast Cancer Cells Requires Hyperactivation of eIF4F-Mediated Translation.
Q92617353	Acteoside From Ligustrum robustum (Roxb.) Blume Ameliorates Lipid Metabolism and Synthesis in a HepG2 Cell Model of Lipid Accumulation
Q42152405	Activating hotspot L205R mutation in PRKACA and adrenal Cushing's syndrome
Q34516879	Activation of PKA leads to mesenchymal-to-epithelial transition and loss of tumor-initiating ability
Q51735233	Activation of PhoBR under phosphate-rich conditions reduces the virulence of Xanthomonas oryzae pv. oryzae.
Q36856058	Activation of a T-box-Otx2-Gsc gene network independent of TBP and TBP-related factors
Q53686372	Activation of disease resistance against Botryosphaeria dothidea by downregulating the expression of MdSYP121 in apple.
Q34277532	Activation of the carbon concentrating mechanism by CO2 deprivation coincides with massive transcriptional restructuring in Chlamydomonas reinhardtii.
Q52585984	Activation of σ20-dependent recombination and horizontal gene transfer in Mycoplasma genitalium.
Q52625681	Active BRAF-V600E is the key player in generation of a sessile serrated polyp-specific DNA methylation profile.
Q46079460	Active DNA demethylation at enhancers during the vertebrate phylotypic period
Q58568494	Active intermixing of indirect and direct neurons builds the striatal mosaic
Q36836841	Activity of a Py-Im polyamide targeted to the estrogen response element
Q46559090	Activity-Dependent Regulation of Alternative Cleavage and Polyadenylation During Hippocampal Long-Term Potentiation.
Q64963727	Activity/exercise-induced changes in the liver transcriptome after chronic spinal cord injury.
Q87990980	Actomyosin-Mediated Tension Orchestrates Uncoupled Respiration in Adipose Tissues
Q55018023	Acute Hepatopancreatic Necrosis Disease (AHPND) related microRNAs in Litopenaeus vannamei infected with AHPND-causing strain of Vibrio parahemolyticus.
Q58569508	Acute microglia ablation induces neurodegeneration in the somatosensory system
Q36766532	Acute stress is detrimental to heart regeneration in zebrafish
Q100464296	Adaptation and selection shape clonal evolution of tumors during residual disease and recurrence
Q35793792	Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas
Q90495391	Adaptation of Plasmodium falciparum to humans involved the loss of an ape-specific erythrocyte invasion ligand
Q36166893	Adaptation of a RAS pathway activation signature from FF to FFPE tissues in colorectal cancer
Q28828409	Adaptation to different types of stress converge on mitochondrial metabolism
Q38725573	Adaptive Chromatin Remodeling Drives Glioblastoma Stem Cell Plasticity and Drug Tolerance.
Q46093243	Adaptive Mutations in RNA Polymerase and the Transcriptional Terminator Rho Have Similar Effects on Escherichia coli Gene Expression.
Q92919109	Adaptive adipose tissue stromal plasticity in response to cold stress and antibody-based metabolic therapy
Q30763407	Adaptive bandwidth kernel density estimation for next-generation sequencing data
Q36686589	Adaptive engineering of a hyperthermophilic archaeon on CO and discovering the underlying mechanism by multi-omics analysis
Q41461862	Adaptive from Innate: Human IFN-γ+CD4+ T Cells Can Arise Directly from CXCL8-Producing Recent Thymic Emigrants in Babies and Adults.
Q95789775	Adaptive genomic structural variation in the grape powdery mildew pathogen, Erysiphe necator
Q41878889	Adaptive metabolic rewiring to chronic SFK inhibition
Q36332613	Adaptive sequence evolution is driven by biotic stress in a pair of orchid species (Dactylorhiza) with distinct ecological optima
Q58613614	Adaptively capturing the heterogeneity of expression for cancer biomarker identification
Q34522259	Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon.
Q64075211	Adipose Tissue in Persons With HIV Is Enriched for CD4 T Effector Memory and T Effector Memory RA Cells, Which Show Higher CD69 Expression and CD57, CX3CR1, GPR56 Co-expression With Increasing Glucose Intolerance
Q57864838	Adipose transcriptome analysis provides novel insights into molecular regulation of prolonged fasting in northern elephant seal pups
Q27311570	Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
Q52716413	Advances in Transcriptomics: Investigating Cardiovascular Disease at Unprecedented Resolution.
Q62489975	Advancing Personalized Medicine Through the Application of Whole Exome Sequencing and Big Data Analytics
Q36240675	Age influences the olfactory profiles of the migratory oriental armyworm mythimna separate at the molecular level
Q49547284	Age-Associated Decline in Thymic B Cell Expression of Aire and Aire-Dependent Self-Antigens.
Q36892940	Age-Dependent Pancreatic Gene Regulation Reveals Mechanisms Governing Human β Cell Function
Q35683728	Age-Related Gene Expression Differences in Monocytes from Human Neonates, Young Adults, and Older Adults
Q53070588	Age-associated bimodal transcriptional drift reduces intergenic disparities in transcription.
Q34444652	Age-related changes of gene expression in the neocortex: preliminary data on RNA-Seq of the transcriptome in three functionally distinct cortical areas
Q36194680	Aging is associated with an expansion of CD49fhi mammary stem cells that show a decline in function and increased transformation potential
Q37285600	Aging is associated with highly defined epigenetic changes in the human epidermis.
Q36907335	Aging. Aging-induced type I interferon response at the choroid plexus negatively affects brain function
Q37644574	Ago-RIP-Seq identifies Polycomb repressive complex I member CBX7 as a major target of miR-375 in prostate cancer progression
Q36987476	Ah Receptor Activation by Dioxin Disrupts Activin, BMP, and WNT Signals During the Early Differentiation of Mouse Embryonic Stem Cells and Inhibits Cardiomyocyte Functions
Q92746872	Aims, Study Design, and Enrollment Results From the Assessing Predictors of Infant Respiratory Syncytial Virus Effects and Severity Study
Q93253561	Aire-dependent genes undergo Clp1-mediated 3'UTR shortening associated with higher transcript stability in the thymus
Q36624579	Akt-mTORC1 signaling regulates Acly to integrate metabolic input to control of macrophage activation
Q27318498	Akt1/protein kinase B enhances transcriptional reprogramming of fibroblasts to functional cardiomyocytes
Q41987540	Aldehyde dehydrogenase activity enriches for proximal airway basal stem cells and promotes their proliferation.
Q41002022	Algal dual-specificity tyrosine phosphorylation-regulated kinase, triacylglycerol accumulation regulator1, regulates accumulation of triacylglycerol in nitrogen or sulfur deficiency.
Q46296544	Aliphatic Hydrocarbon Enhances Phenanthrene Degradation by Autochthonous Prokaryotic Communities from a Pristine Seawater
Q42352247	Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes
Q38468622	Allele Workbench: transcriptome pipeline and interactive graphics for allele-specific expression
Q35762077	Allele-Selective Transcriptome Recruitment to Polysomes Primed for Translation: Protein-Coding and Noncoding RNAs, and RNA Isoforms
Q33870832	Allele-specific expression and eQTL analysis in mouse adipose tissue
Q88501871	Alteration of S-adenosylhomocysteine levels affects lignin biosynthesis in switchgrass
Q30551542	Alteration of the microRNA network during the progression of Alzheimer's disease
Q34822678	Alterations in siRNA and miRNA expression profiles detected by deep sequencing of transgenic rice with siRNA-mediated viral resistance
Q42778332	Alterations in the host transcriptome in vitro following Rift Valley fever virus infection
Q35014717	Alterations of the transcriptome of Sulfolobus acidocaldarius by exoribonuclease aCPSF2.
Q41027903	Alterations to chromatin in intestinal macrophages link IL-10 deficiency to inappropriate inflammatory responses
Q37657825	Altered enhancer transcription underlies Huntington's disease striatal transcriptional signature
Q64060745	Altered gene expression in antipsychotic-induced weight gain
Q35228870	Altered microglial phagocytosis in GPR34-deficient mice.
Q92564511	Altered serotonergic circuitry in SSRI-resistant major depressive disorder patient-derived neurons
Q29394736	Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences
Q48053441	Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis.
Q37350682	Alternative polyadenylation and differential expression of Shank mRNAs in the synaptic neuropil
Q33621511	Alternative polyadenylation diversifies post-transcriptional regulation by selective RNA-protein interactions.
Q58556962	Alternative polyadenylation factors link cell cycle to migration
Q36702526	Alternative polyadenylation in glioblastoma multiforme and changes in predicted RNA binding protein profiles
Q47334204	Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues
Q35044531	Alzheimer's disease is associated with altered expression of genes involved in immune response and mitochondrial processes in astrocytes
Q96431918	Alzheimer's disease-related dysregulation of mRNA translation causes key pathological features with ageing
Q57188263	Amniotic ectoderm expansion in mouse occurs via distinct modes and requires SMAD5-mediated signalling
Q38599321	Amphibian molecular ecology and how it has informed conservation
Q41194843	Amplicon-based metagenomics identified candidate organisms in soils that caused yield decline in strawberry
Q90424047	Amplification of the Mutation-Carrying BRCA2 Allele Promotes RAD51 Loading and PARP Inhibitor Resistance in the Absence of Reversion Mutations
Q64093009	An Adaptive Multivariate Two-Sample Test With Application to Microbiome Differential Abundance Analysis
Q40056915	An Alternative STAT Signaling Pathway Acts in Viral Immunity in Caenorhabditis elegans
Q42037133	An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants.
Q90383947	An Efficient and Flexible Method for Deconvoluting Bulk RNA-Seq Data with Single-Cell RNA-Seq Data
Q89720904	An Extended Culture System that Supports Human Primordial Germ Cell-like Cell Survival and Initiation of DNA Methylation Erasure
Q37349779	An H4K16 histone acetyltransferase mediates decondensation of the X chromosome in C. elegans males
Q31112972	An Integrated Approach for RNA-seq Data Normalization
Q36604389	An Integrated Multiomics Approach to Identify Candidate Antigens for Serodiagnosis of Human Onchocerciasis
Q47945450	An Integrated Systems Biology Approach Identifies TRIM25 as a Key Determinant of Breast Cancer Metastasis.
Q49886777	An Integrated Understanding of the Rapid Metabolic Benefits of a Carbohydrate-Restricted Diet on Hepatic Steatosis in Humans.
Q36449739	An Integrative Genomic Study Implicates the Postsynaptic Density in the Pathogenesis of Bipolar Disorder
Q64102443	An Ionic Limit to Life in the Deep Subsurface
Q57767672	An Island-Based Approach for Differential Expression Analysis
Q30964532	An Iterative Leave-One-Out Approach to Outlier Detection in RNA-Seq Data
Q42182457	An NF-κB-microRNA regulatory network tunes macrophage inflammatory responses.
Q64904197	An Organoid-Based Preclinical Model of Human Gastric Cancer.
Q90054841	An Overview of Embryogenesis: External Morphology and Transcriptome Profiling in the Hemipteran Insect Nilaparvata lugens
Q51329053	An RNA interference knock-down of nitrate reductase enhances lipid biosynthesis in the diatom Phaeodactylum tricornutum.
Q34496399	An RNA-Seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants.
Q38862426	An RNA-Seq transcriptome analysis revealing novel insights into aluminum tolerance and accumulation in tea plant
Q30564045	An accurate paired sample test for count data
Q34472066	An analysis of the changes in soluble hydrogenase and global gene expression in Cupriavidus necator (Ralstonia eutropha) H16 grown in heterotrophic diauxic batch culture.
Q61443947	An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning
Q36899631	An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes
Q40037734	An annotation agnostic algorithm for detecting nascent RNA transcripts in GRO-seq
Q40311426	An antimicrobial peptide-resistant minor subpopulation of Photorhabdus luminescens is responsible for virulence.
Q41052256	An atlas of mouse CD4(+) T cell transcriptomes
Q40337716	An effective analytic method for detecting tissue-specific genes in RNA-seq experiments
Q30868624	An effective differential expression analysis of deep-sequencing data based on the Poisson log-normal model
Q33845308	An efficient algorithm for accurate computation of the Dirichlet-multinomial log-likelihood function
Q41125131	An efficient method for genome-wide polyadenylation site mapping and RNA quantification
Q36585139	An efficient rRNA removal method for RNA sequencing in GC-rich bacteria
Q47691458	An empirical Bayes method for robust variance estimation in detecting DEGs using microarray data
Q39260223	An empirical likelihood ratio test robust to individual heterogeneity for differential expression analysis of RNA-seq
Q50742539	An epigenetic signature of developmental potential in neural stem cells and early neurons.
Q52311771	An epistatic effect of KRT25 on SP6 is involved in curly coat in horses.
Q40536352	An essential role for Gα(i2) in Smoothened-stimulated epithelial cell proliferation in the mammary gland
Q98773451	An essential role for MEF2C in the cortical response to loss of sleep in mice
Q35826790	An evaluation of methods to test predefined genomic regions for differential methylation in bisulfite sequencing data
Q60907378	An evolutionarily-conserved Wnt3/β-catenin/Sp5 feedback loop restricts head organizer activity in Hydra
Q24304980	An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
Q57070180	An expression signature model to predict lung adenocarcinoma-specific survival
Q35801066	An improved understanding of cancer genomics through massively parallel sequencing
Q35229286	An increasing opine carbon bias in artificial exudation systems and genetically modified plant rhizospheres leads to an increasing reshaping of bacterial populations
Q38598947	An integrated analysis for long noncoding RNAs and microRNAs with the mediated competing endogenous RNA network in papillary renal cell carcinoma
Q38614360	An integrated expression atlas of miRNAs and their promoters in human and mouse.
Q90134482	An integrated genome-wide multi-omics analysis of gene expression dynamics in the preimplantation mouse embryo
Q57306913	An integrated genomic analysis of anaplastic meningioma identifies prognostic molecular signatures
Q59793446	An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus
Q64910092	An integrated prediction model of recurrence in endometrial endometrioid cancers.
Q93067970	An integrated transcriptomics and metabolomics analysis of the Cucurbita pepo nectary implicates key modules of primary metabolism involved in nectar synthesis and secretion
Q34418393	An integrative analysis of colon cancer identifies an essential function for PRPF6 in tumor growth
Q58701174	An integrative piRNA analysis of mouse gametes and zygotes reveals new potential origins and gene regulatory roles
Q34100841	An interferon signature identified by RNA-sequencing of mammary tissues varies across the estrous cycle and is predictive of metastasis-free survival
Q37361030	An intestinal microRNA modulates the homeostatic adaptation to chronic oxidative stress in C. elegans
Q42695965	An omnibus test for differential distribution analysis of microbiome sequencing data
Q33580353	An optimized, broadly applicable piggyBac transposon induction system
Q37473863	An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog
Q37261624	Anaerobic choline metabolism in microcompartments promotes growth and swarming of Proteus mirabilis
Q64247982	Analyses of histological and transcriptome differences in the skin of short-hair and long-hair rabbits
Q35918520	Analysing multiple types of molecular profiles simultaneously: connecting the needles in the haystack
Q51797707	Analysis RNA-seq and Noncoding RNA.
Q58605400	Analysis and correction of compositional bias in sparse sequencing count data
Q37284562	Analysis of Allelic Imbalance in Rice Hybrids Under Water Stress and Association of Asymmetrically Expressed Genes with Drought-Response QTLs.
Q37472984	Analysis of C. elegans muscle transcriptome using trans-splicing-based RNA tagging (SRT).
Q88690823	Analysis of ChIP-Seq and RNA-Seq Data with BioWardrobe
Q34488761	Analysis of Circadian Rhythms in the Basal Filamentous Ascomycete Pyronema confluens.
Q33803398	Analysis of DNA polymerase ν function in meiotic recombination, immunoglobulin class-switching, and DNA damage tolerance.
Q92815517	Analysis of Differentially Expressed Transcripts in Apolygus lucorum (Meyer-Dür) Exposed to Different Temperature Coefficient Insecticides
Q41601457	Analysis of RNAseq datasets from a comparative infectious disease zebrafish model using GeneTiles bioinformatics
Q30252849	Analysis of Shigella flexneri Resistance, Biofilm Formation, and Transcriptional Profile in Response to Bile Salts.
Q26766664	Analysis of Whole Transcriptome Sequencing Data: Workflow and Software
Q28657959	Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes in Neurospora crassa
Q92407662	Analysis of alternative cleavage and polyadenylation in mature and differentiating neurons using RNA-seq data
Q33715872	Analysis of banana transcriptome and global gene expression profiles in banana roots in response to infection by race 1 and tropical race 4 of Fusarium oxysporum f. sp. cubense.
Q44076247	Analysis of candidate genes for lineage-specific expression changes in humans and primates
Q52739308	Analysis of chromatin accessibility in decidualizing human endometrial stromal cells.
Q39679934	Analysis of differential splicing suggests different modes of short-term splicing regulation
Q38433802	Analysis of differentially expressed genes and adaptive mechanisms of Prunus triloba Lindl. under alkaline stress
Q35805384	Analysis of global transcriptional profiles of enterotoxigenic Escherichia coli isolate E24377A.
Q36342251	Analysis of host microRNA function uncovers a role for miR-29b-2-5p in Shigella capture by filopodia.
Q30975976	Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation.
Q35030402	Analysis of long non-coding RNAs highlights tissue-specific expression patterns and epigenetic profiles in normal and psoriatic skin
Q57154232	Analysis of miRNAs and their target genes in five Melilotus albus NILs with different coumarin content
Q103836644	Analysis of microbial compositions: a review of normalization and differential abundance analysis
Q50560318	Analysis of non-coding transcriptome in rice and maize uncovers roles of conserved lncRNAs associated with agriculture traits.
Q37003089	Analysis of piRNA-mediated silencing of active TEs in Drosophila melanogaster suggests limits on the evolution of host genome defense
Q35056618	Analysis of porcine adipose tissue transcriptome reveals differences in de novo fatty acid synthesis in pigs with divergent muscle fatty acid composition
Q34584442	Analysis of stranded information using an automated procedure for strand specific RNA sequencing
Q89481855	Analysis of the Coding and Non-Coding RNA Transcriptomes in Response to Bell Pepper Chilling
Q47139974	Analysis of the Genes Involved in Thiocyanate Oxidation during Growth in Continuous Culture of the Haloalkaliphilic Sulfur-Oxidizing Bacterium Thioalkalivibrio thiocyanoxidans ARh 2T Using Transcriptomics
Q35735074	Analysis of the Human Prostate-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling Identifies TMEM79 and ACOXL as Two Putative, Diagnostic Markers in Prostate Cancer
Q58107160	Analysis of the Trichuris suis excretory/secretory proteins as a function of life cycle stage and their immunomodulatory properties
Q34671600	Analysis of the alfalfa root transcriptome in response to salinity stress
Q58049790	Analysis of the barley leaf transcriptome under salinity stress using mRNA-Seq
Q35534496	Analysis of the basal chordate Botryllus schlosseri reveals a set of genes associated with fertility
Q100530564	Analysis of the circRNAs expression profile in mouse lung with H7N9 influenza A virus infection
Q60915492	Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage
Q30457891	Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation
Q34995049	Analysis of the host transcriptome from demyelinating spinal cord of murine coronavirus-infected mice
Q33771338	Analysis of the lipid body proteome of the oleaginous alga Lobosphaera incisa
Q55246135	Analysis of the resistance mechanisms in sugarcane during Sporisorium scitamineum infection using RNA-seq and microscopy.
Q33557722	Analysis options for high-throughput sequencing in miRNA expression profiling
Q34670822	Analytical tools and current challenges in the modern era of neuroepigenomics
Q55004281	Analyzing AbrB-Knockout Effects through Genome and Transcriptome Sequencing of Bacillus licheniformis DW2.
Q31025232	Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course RNA sequencing data
Q42652529	Analyzing homoeolog expression provides insights into the rediploidization event in gynogenetic hybrids of Carassius auratus red var. × Cyprinus carpio
Q35877341	Analyzing the Transcriptomes of Two Quorum-Sensing Controlled Transcription Factors, RcsA and LrhA, Important for Pantoea stewartii Virulence
Q64098657	Ancestral Stress Alters Lifetime Mental Health Trajectories and Cortical Neuromorphology via Epigenetic Regulation
Q89840603	Ancestral stress programs sex-specific biological aging trajectories and non-communicable disease risk
Q36182031	Ancient Out-of-Africa Mitochondrial DNA Variants Associate with Distinct Mitochondrial Gene Expression Patterns.
Q38781887	Ancient antagonism between CELF and RBFOX families tunes mRNA splicing outcomes
Q92602730	Androgen receptor degraders overcome common resistance mechanisms developed during prostate cancer treatment
Q35761370	Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes
Q36729407	Angiogenic gene signature in human pancreatic cancer correlates with TGF-beta and inflammatory transcriptomes.
Q36925986	Anguillicola crassus Infection Significantly Affects the Silvering Related Modifications in Steady State mRNA Levels in Gas Gland Tissue of the European Eel
Q40089920	Anguillicola crassus infection affects mRNA expression levels in gas gland tissue of European yellow and silver eel.
Q58727960	Annotation and functional clustering of circRNA expression in rhesus macaque brain during aging
Q34266477	Annotation of long non-coding RNAs expressed in collaborative cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts
Q46533152	Annual Killifish Transcriptomics and Candidate Genes for Metazoan Diapause.
Q39899744	Anthropogenic effects on bacterial diversity and function along a river-to-estuary gradient in Northwest Greece revealed by metagenomics.
Q38820267	Anti-Müllerian hormone is produced heterogeneously in primate preantral follicles and is a potential biomarker for follicle growth and oocyte maturation in vitro
Q42778200	Anti-inflammaging effects of human alpha-1 antitrypsin
Q47148830	Antibiotic Treatment Induces Long-lasting Changes in the Fecal Microbiota that Protect Against Colitis
Q41852042	Antifungal drug resistance evoked via RNAi-dependent epimutations
Q54218191	Antisense transcription in Pseudomonas aeruginosa.
Q98735660	Aphid-Responsive Defense Networks in Hybrid Switchgrass
Q92983932	Apical sodium-dependent bile acid transporter inhibition with volixibat improves metabolic aspects and components of non-alcoholic steatohepatitis in Ldlr-/-.Leiden mice
Q33881227	Apomictic and sexual germline development differ with respect to cell cycle, transcriptional, hormonal and epigenetic regulation
Q56894959	Apparent bias toward long gene misregulation in MeCP2 syndromes disappears after controlling for baseline variations
Q93080919	Application of Transcriptomics to Enhance Early Diagnostics of Mycobacterial Infections, with an Emphasis on Mycobacterium avium ssp. paratuberculosis
Q35379600	Application of high-throughput sequencing to circulating microRNAs reveals novel biomarkers for drug-induced liver injury
Q39787211	Application of in-house virtual protein database performed in genomic-proteomic combined research on heavy-metal stressed onion roots.
Q38014611	Application of next-generation sequencing technologies in virology
Q35539015	Application of quantitative trait locus mapping and transcriptomics to studies of the senescence-accelerated phenotype in rats.
Q46287211	Application of stable-isotope labelling techniques for the detection of active diazotrophs
Q26751270	Application of whole genome shotgun sequencing for detection and characterization of genetically modified organisms and derived products
Q33954865	Applying thiouracil tagging to mouse transcriptome analysis
Q39243954	Approaches to Detect microRNA Expression in T Cell Subsets and T Cell Differentiation
Q36997737	Approaches to uncovering cancer diagnostic and prognostic molecular signatures
Q55094347	Approximate inference of gene regulatory network models from RNA-Seq time series data.
Q33365400	Arabidopsis DNA topoisomerase I alpha is required for adaptive response to light and flower development
Q35892471	Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cis-regulatory Elements
Q35043303	Arabidopsis HFR1 is a potential nuclear substrate regulated by the Xanthomonas type III effector XopD(Xcc8004).
Q46167127	Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress
Q38893025	Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses
Q46346810	Arabidopsis shaker pollen inward K+ channel SPIK functions in SnRK1 complex-regulated pollen hydration on the stigma
Q55294264	Arachidonic Acid Stress Impacts Pneumococcal Fatty Acid Homeostasis.
Q39454893	Arbuscular mycorrhizal fungal community composition is altered by long-term litter removal but not litter addition in a lowland tropical forest.
Q42799924	Archaeal signal transduction: impact of protein phosphatase deletions on cell size, motility, and energy metabolism in Sulfolobus acidocaldarius
Q41663105	Architectural delineation and molecular identification of extracellular matrix in ascidian embryos and larvae.
Q42777428	Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
Q33950661	Argonaute-bound small RNAs from promoter-proximal RNA polymerase II
Q50419818	Argonaute2 and LaminB modulate gene expression by controlling chromatin topology.
Q28389940	Arsenic responsive microRNAs in vivo and their potential involvement in arsenic-induced oxidative stress
Q28256153	Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
Q91767757	Artificial selection on GmOLEO1 contributes to the increase in seed oil during soybean domestication
Q58106741	Ascophyllum nodosum extract mitigates salinity stress in Arabidopsis thaliana by modulating the expression of miRNA involved in stress tolerance and nutrient acquisition
Q98161135	Ascorbate sensitizes human osteosarcoma cells to the cytostatic effects of cisplatin
Q35121886	Asexual expansion of Toxoplasma gondii merozoites is distinct from tachyzoites and entails expression of non-overlapping gene families to attach, invade, and replicate within feline enterocytes
Q50133576	Asparagine bioavailability governs metastasis in a model of breast cancer.
Q43487488	Assembly of functionally integrated human forebrain spheroids
Q27703586	Assembly of methylated KDM1A and CHD1 drives androgen receptor-dependent transcription and translocation
Q27302976	Assessing Dissimilarity Measures for Sample-Based Hierarchical Clustering of RNA Sequencing Data Using Plasmode Datasets
Q92642629	Assessing Transcriptional Responses to Light by the Dinoflagellate Symbiodinium
Q36202785	Assessing characteristics of RNA amplification methods for single cell RNA sequencing
Q96224613	Assessing exposure effects on gene expression
Q35640115	Assessing long-distance RNA sequence connectivity via RNA-templated DNA-DNA ligation
Q36581426	Assessing similarity to primary tissue and cortical layer identity in induced pluripotent stem cell-derived cortical neurons through single-cell transcriptomics.
Q89576386	Assessing the Effect of Pretreatments on the Structure and Functionality of Microbial Communities for the Bioconversion of Microalgae to Biogas
Q51331108	Assessing the Role of ETHYLENE RESPONSE FACTOR Transcriptional Repressors in Salicylic Acid-Mediated Suppression of Jasmonic Acid-Responsive Genes.
Q43492548	Assessing the reliability of spike-in normalization for analyses of single-cell RNA sequencing data
Q33555322	Assessment of Insertion Sequence Mobilization as an Adaptive Response to Oxidative Stress in Acinetobacter baumannii Using IS-seq
Q33877272	Assessment of Single Cell RNA-Seq Normalization Methods
Q38817085	Assessment of engineered cells using CellNet and RNA-seq.
Q38743268	Assessment of histone tail modifications and transcriptional profiling during colon cancer progression reveals a global decrease in H3K4me3 activity.
Q36971189	Assessment of individual differences in the rat nucleus accumbens transcriptome following taste-heroin extended access.
Q91923505	Assessment of intratumoral heterogeneity with mutations and gene expression profiles
Q30880007	Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data
Q42774372	Assessment of myometrial transcriptome changes associated with spontaneous human labour by high-throughput RNA-seq
Q35770652	Assessment of small RNA sorting into different extracellular fractions revealed by high-throughput sequencing of breast cell lines.
Q34632922	Assessment of subnetwork detection methods for breast cancer
Q58617898	Association analysis using somatic mutations
Q30487016	Association between risk of oral precancer and genetic variations in microRNA and related processing genes.
Q50417222	Association of cerebrovascular dysfunction with the development of Alzheimer's disease-like pathology in OXYS rats.
Q34661951	Association of condensin with chromosomes depends on DNA binding by its HEAT-repeat subunits
Q91381702	Association of maternal prenatal psychological stressors and distress with maternal and early infant faecal bacterial profile
Q35024139	Astrocyte elevated gene-1 and c-Myc cooperate to promote hepatocarcinogenesis in mice
Q38458768	Astrocyte pathology in Alexander disease causes a marked inflammatory environment
Q55097800	Asymmetric distribution of biomolecules of maternal origin in the Xenopus laevis egg and their impact on the developmental plan.
Q37068660	Asymmetric thymocyte death underlies the CD4:CD8 T-cell ratio in the adaptive immune system
Q35392744	Asymmetric transcript discovery by RNA-seq in C. elegans blastomeres identifies neg-1, a gene important for anterior morphogenesis.
Q34770377	At the brink of eusociality: transcriptomic correlates of worker behaviour in a small carpenter bee
Q30878072	AtCAST3.0 update: a web-based tool for analysis of transcriptome data by searching similarities in gene expression profiles
Q51736887	Atf3 links loss of epithelial polarity to defects in cell differentiation and cytoarchitecture.
Q59348992	Atopic asthma after rhinovirus-induced wheezing is associated with DNA methylation change in the SMAD3 gene promoter
Q48030116	Attack-Phase Bdellovibrio bacteriovorus Responses to Extracellular Nutrients Are Analogous to Those Seen During Late Intraperiplasmic Growth
Q64949421	Attention-Based Multi-NMF Deep Neural Network with Multimodality Data for Breast Cancer Prognosis Model.
Q35688661	Authentic Research Experience and "Big Data" Analysis in the Classroom: Maize Response to Abiotic Stress
Q47341079	Autism-like behaviours and germline transmission in transgenic monkeys overexpressing MeCP2.
Q39001121	Autoinducer 2 Signaling via the Phosphotransferase FruA Drives Galactose Utilization by Streptococcus pneumoniae, Resulting in Hypervirulence
Q46269139	Autoinhibitory sterol sulfates mediate programmed cell death in a bloom-forming marine diatom.
Q49886571	Autologous iPSC-Based Vaccines Elicit Anti-tumor Responses In Vivo.
Q91800470	Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics
Q36361117	Automated multigroup outlier identification in molecular high-throughput data using bagplots and gemplots
Q27311265	Autophagy and modular restructuring of metabolism control germline tumor differentiation and proliferation in C. elegans
Q36506944	Autosomal gsdf acts as a male sex initiator in the fish medaka
Q37469752	Auxin production in the endosperm drives seed coat development in Arabidopsis.
Q92021984	Auxin regulates endosperm cellularization in Arabidopsis
Q36385562	Auxin regulates functional gene groups in a fold-change-specific manner in Arabidopsis thaliana roots
Q33362472	Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis
Q34368795	Avian resistance to Campylobacter jejuni colonization is associated with an intestinal immunogene expression signature identified by mRNA sequencing.
Q50545382	B cell lymphoma progression promotes the accumulation of circulating Ly6Clo monocytes with immunosuppressive activity.
Q34748194	B cell super-enhancers and regulatory clusters recruit AID tumorigenic activity
Q31012687	B-Cell and Monocyte Contribution to Systemic Lupus Erythematosus Identified by Cell-Type-Specific Differential Expression Analysis in RNA-Seq Data
Q59813499	BAC-BROWSER: The Tool for Visualization and Analysis of Prokaryotic Genomes
Q30855028	BADGE: a novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data.
Q64250464	BAP1 haploinsufficiency predicts a distinct immunogenic class of malignant peritoneal mesothelioma
Q30976555	BASiCS: Bayesian Analysis of Single-Cell Sequencing Data
Q64057829	BAYESIAN LATENT HIERARCHICAL MODEL FOR TRANSCRIPTOMIC META-ANALYSIS TO DETECT BIOMARKERS WITH CLUSTERED META-PATTERNS OF DIFFERENTIAL EXPRESSION SIGNALS
Q52714789	BCseq: accurate single cell RNA-seq quantification with bias correction.
Q64058414	BES/BZR Transcription Factor TaBZR2 Positively Regulates Drought Responses by Activation of
Q90736744	BET Inhibitors Synergize with Carfilzomib to Induce Cell Death in Cancer Cells via Impairing Nrf1 Transcriptional Activity and Exacerbating the Unfolded Protein Response
Q41255959	BET bromodomain inhibition suppresses innate inflammatory and profibrotic transcriptional networks in heart failure
Q35763820	BOG: R-package for Bacterium and virus analysis of Orthologous Groups
Q33557475	BRD4 promotes p63 and GRHL3 expression downstream of FOXO in mammary epithelial cells
Q24284893	BSRD: a repository for bacterial small regulatory RNA
Q37257344	Bacterial argonaute samples the transcriptome to identify foreign DNA
Q30389412	Bacterial cellulose synthesis mechanism of facultative anaerobe Enterobacter sp. FY-07.
Q91785760	Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing
Q42171894	Bacterial drug tolerance under clinical conditions is governed by anaerobic adaptation but not anaerobic respiration
Q46039105	Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi.
Q40913942	Bacterial growth at -15 °C; molecular insights from the permafrost bacterium Planococcus halocryophilus Or1
Q35677449	Bacterial secretions of nonpathogenic Escherichia coli elicit inflammatory pathways: a closer investigation of interkingdom signaling
Q40283099	Bacterial virulence phenotypes of Escherichia coli and host susceptibility determine risk for urinary tract infections
Q36007356	Bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection
Q47868598	Balanced activation of IspG and IspH to eliminate MEP intermediate accumulation and improve isoprenoids production in Escherichia coli
Q36687746	Ballgown bridges the gap between transcriptome assembly and expression analysis
Q28709644	BamView: visualizing and interpretation of next-generation sequencing read alignments
Q27935136	Barcode Sequencing Screen Identifies SUB1 as a Regulator of Yeast Pheromone Inducible Genes
Q35566022	Bariatric Surgery Induces Disruption in Inflammatory Signaling Pathways Mediated by Immune Cells in Adipose Tissue: A RNA-Seq Study
Q90581658	Bark tissue transcriptome analyses of inverted Populus yunnanensis cuttings reveal the crucial role of plant hormones in response to inversion
Q59312641	Bases of antisense lncRNA-associated regulation of gene expression in fission yeast
Q35697267	Bayesian Hierarchical Model for Differential Gene Expression Using RNA-seq Data
Q33698275	Bayesian Inference of Allele-Specific Gene Expression Indicates Abundant Cis-Regulatory Variation in Natural Flycatcher Populations
Q33955732	Bayesian approach to single-cell differential expression analysis
Q40815627	Bayesian hidden Markov models to identify RNA-protein interaction sites in PAR-CLIP.
Q73477529	Bayesian hierarchical negative binomial models for multivariable analyses with applications to human microbiome count data
Q30675929	Bayesian inference from count data using discrete uniform priors
Q64911644	BdorOR88a Modulates the Responsiveness to Methyl Eugenol in Mature Males of Bactrocera dorsalis (Hendel).
Q94468545	Benchmarking RNA-seq differential expression analysis methods using spike-in and simulation data
Q55715465	Benchmarking differential expression analysis tools for RNA-Seq: normalization-based vs. log-ratio transformation-based methods.
Q101409864	Benchmarking of cell type deconvolution pipelines for transcriptomics data
Q41694480	Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
Q97681495	Beneficial effects of IL-4 and IL-6 on rat neonatal target cardiac cells
Q60547176	Best practices for analysing microbiomes
Q90250455	Beta-binomial modeling of CRISPR pooled screen data identifies target genes with greater sensitivity and fewer false negatives
Q92017516	Better prognostic determination and feature characterization of cutaneous melanoma through integrative genomic analysis
Q44797235	Beyond the polymerase-γ theory: Production of ROS as a mode of NRTI-induced mitochondrial toxicity.
Q38429129	Bi-directional and shared epigenomic signatures following proton and 56Fe irradiation
Q33583662	Biased, non-equivalent gene-proximal and -distal binding motifs of orphan nuclear receptor TR4 in primary human erythroid cells
Q34400876	Bidirectional developmental potential in reprogrammed cells with acquired pluripotency
Q35703158	Bile diversion to the distal small intestine has comparable metabolic benefits to bariatric surgery.
Q42778330	Bilin-dependent photoacclimation in Chlamydomonas reinhardtii
Q35228329	Bimodal signatures of germline methylation are linked with gene expression plasticity in the coral Acropora millepora
Q27310223	Binary gene expression patterning of the molt cycle: the case of chitin metabolism
Q41634610	Binding of nuclear factor κB to noncanonical consensus sites reveals its multimodal role during the early inflammatory response
Q47142870	Binding to SMN2 pre-mRNA-protein complex elicits specificity for small molecule splicing modifiers
Q30985531	BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data
Q35225825	BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis.
Q28538611	Bioassay-guided fractionation of extracts from Codiaeum variegatum against Entamoeba histolytica discovers compounds that modify expression of ceramide biosynthesis related genes
Q31114791	Bioinformatic Analysis of Next-Generation Sequencing Data to Identify WT1-Associated Differential Gene and Isoform Expression
Q52576145	Bioinformatic Integration of Molecular Networks and Major Pathways Involved in Mice Cochlear and Vestibular Supporting Cells.
Q37834104	Bioinformatic analysis of bacteria and host cell dual RNA-sequencing experiments.
Q34353154	Bioinformatic analysis of barcoded cDNA libraries for small RNA profiling by next-generation sequencing
Q34144598	Bioinformatic analysis reveals a pattern of STAT3-associated gene expression specific to basal-like breast cancers in human tumors
Q31150896	Bioinformatic tools for analysis of CLIP ribonucleoprotein data
Q39259719	Bioinformatics Analysis of Small RNA Transcriptomes: The Detailed Workflow
Q47726158	Bioinformatics Approaches to Predict Drug Responses from Genomic Sequencing
Q56831608	Bioinformatics Tools for Next-Generation RNA Sequencing Analysis
Q47149687	Bioinformatics analysis of gene expression profiles to identify causal genes in luminal B2 breast cancer
Q35674363	Bioinformatics analysis of thousands of TCGA tumors to determine the involvement of epigenetic regulators in human cancer
Q28710308	Bioinformatics of Cancer ncRNA in High Throughput Sequencing: Present State and Challenges
Q38857787	Bioinformatics resources for pollen
Q38635999	Biomarker detection and categorization in ribonucleic acid sequencing meta-analysis using Bayesian hierarchical models.
Q35120968	Biomarkers of NAFLD progression: a lipidomics approach to an epidemic
Q52381530	Biosorption of strontium ions from simulated high-level liquid waste by living Saccharomyces cerevisiae.
Q49950436	Biosynthesis and genetic encoding of phosphothreonine through parallel selection and deep sequencing.
Q52618002	Biosynthesis of fragin is controlled by a novel quorum sensing signal.
Q35088850	Bisphenol A alters autonomic tone and extracellular matrix structure and induces sex-specific effects on cardiovascular function in male and female CD-1 mice
Q27312534	Bistability in a metabolic network underpins the de novo evolution of colony switching in Pseudomonas fluorescens
Q90621714	Blast Preconditioning Protects Retinal Ganglion Cells and Reveals Targets for Prevention of Neurodegeneration Following Blast-Mediated Traumatic Brian Injury
Q59087648	Blastocyst-like structures generated solely from stem cells
Q35074625	Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching
Q42776070	Blocking miRNA Biogenesis in Adult Forebrain Neurons Enhances Seizure Susceptibility, Fear Memory, and Food Intake by Increasing Neuronal Responsiveness.
Q35712901	Blocking of targeted microRNAs from next-generation sequencing libraries
Q41712280	Blocking the QB-binding site of photosystem II by tenuazonic acid, a non-host-specific toxin of Alternaria alternata, activates singlet oxygen-mediated and EXECUTER-dependent signalling in Arabidopsis
Q55021168	Blood Gene Expression Profile Predicts Response to Antipsychotics.
Q55345159	Blood Serum From Head and Neck Squamous Cell Carcinoma Patients Induces Altered MicroRNA and Target Gene Expression Profile in Treated Cells.
Q36614763	Blood Transcriptome Profiling in Myasthenia Gravis Patients to Assess Disease Activity: A Pilot RNA-seq Study
Q92016456	Blood co-expression modules identify potential modifier genes of diabetes and lung function in cystic fibrosis
Q36189183	Blood miRNomes and transcriptomes reveal novel longevity mechanisms in the long-lived bat, Myotis myotis
Q89506302	Blood transcriptomic markers of Mycobacterium tuberculosis load in sputum
Q90219875	Blood vessels guide Schwann cell migration in the adult demyelinated CNS through Eph/ephrin signaling
Q64106896	Blubber transcriptome responses to repeated ACTH administration in a marine mammal
Q61874624	Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors
Q48129422	Bmp signaling maintains a mesoderm progenitor cell state in the mouse tailbud.
Q34593280	Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates
Q33977074	Brachyury regulates proliferation of cancer cells via a p27Kip1-dependent pathway
Q30659498	Brain feminization requires active repression of masculinization via DNA methylation
Q28659230	Brain transcriptome sequencing and assembly of three songbird model systems for the study of social behavior
Q27342729	Branched-chain amino acid catabolism is a conserved regulator of physiological ageing
Q39247031	Brassinosteroid, gibberellin and phytochrome impinge on a common transcription module in Arabidopsis
Q92552983	Brief communication: Long-term absence of Langerhans cells alters the gene expression profile of keratinocytes and dendritic epidermal T cells
Q47612616	Bringing numerous methods for expression and promoter analysis to a public cloud computing service
Q27345564	Bromodomain Proteins Contribute to Maintenance of Bloodstream Form Stage Identity in the African Trypanosome
Q90164336	Bromodomain and extra-terminal domain (BET) proteins regulate melanocyte differentiation
Q93111060	Bromodomain inhibitor jq1 induces cell cycle arrest and apoptosis of glioma stem cells through the VEGF/PI3K/AKT signaling pathway
Q36561822	Bromodomain protein BRD4 is required for estrogen receptor-dependent enhancer activation and gene transcription
Q90108768	Building Containerized Workflows Using the BioDepot-Workflow-Builder
Q64054182	Burkholderia thailandensis strain E555 is a surrogate for the investigation of Burkholderia pseudomallei replication and survival in macrophages
Q33910575	C. elegans SUP-46, an HNRNPM family RNA-binding protein that prevents paternally-mediated epigenetic sterility
Q36898515	C/EBP maintains chromatin accessibility in liver and facilitates glucocorticoid receptor recruitment to steroid response elements
Q64967681	C/EBPβ-LIP induces cancer-type metabolic reprogramming by regulating the let-7/LIN28B circuit in mice.
Q30989599	CADBURE: A generic tool to evaluate the performance of spliced aligners on RNA-Seq data
Q30887790	CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses
Q30810171	CANOES: detecting rare copy number variants from whole exome sequencing data
Q30828773	CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data
Q30964818	CARMO: a comprehensive annotation platform for functional exploration of rice multi-omics data
Q48957033	CAST-ChIP maps cell-type-specific chromatin states in the Drosophila central nervous system.
Q36377314	CD11b(+)Ly6C(++)Ly6G(-) Cells with Suppressive Activity Towards T Cells Accumulate in Lungs of Influenza a Virus-Infected Mice
Q36819821	CD14 in the TLRs signaling pathway is associated with the resistance to E. coli F18 in Chinese domestic weaned piglets
Q92399574	CD161 contributes to prenatal immune suppression of IFNγ-producing PLZF+ T cells
Q90634678	CD20 is dispensable for B-cell receptor signaling but is required for proper actin polymerization, adhesion and migration of malignant B cells
Q37512816	CD8+ T Cells and Macrophages Regulate Pathogenesis in a Mouse Model of Middle East Respiratory Syndrome
Q93015517	CD8α+ Dendritic Cells Dictate Leukemia-Specific CD8+ T Cell Fates
Q51016359	CDC42-related genes are upregulated in helper T cells from obese asthmatic children.
Q90664270	CDK1 dependent phosphorylation of hTERT contributes to cancer progression
Q93382248	CDK12 regulates DNA repair genes by suppressing intronic polyadenylation
Q40950455	CDK12 regulates alternative last exon mRNA splicing and promotes breast cancer cell invasion.
Q47111692	CDK9-dependent RNA polymerase II pausing controls transcription initiation
Q36368446	CEDER: accurate detection of differentially expressed genes by combining significance of exons using RNA-Seq
Q36084308	CETCh-seq: CRISPR epitope tagging ChIP-seq of DNA-binding proteins
Q35947892	CG Methylation Covaries with Differential Gene Expression between Leaf and Floral Bud Tissues of Brachypodium distachyon
Q41510943	CHD1 regulates cell fate determination by activation of differentiation-induced genes
Q24305288	CHD8 regulates neurodevelopmental pathways associated with autism spectrum disorder in neural progenitors
Q28601222	CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
Q36406286	CLIPSeqTools--a novel bioinformatics CLIP-seq analysis suite.
Q30824888	CLImAT: accurate detection of copy number alteration and loss of heterozygosity in impure and aneuploid tumor samples using whole-genome sequencing data
Q90154448	CLUH granules coordinate translation of mitochondrial proteins with mTORC1 signaling and mitophagy
Q24306257	CLUH regulates mitochondrial biogenesis by binding mRNAs of nuclear-encoded mitochondrial proteins
Q42316446	CLUH regulates mitochondrial metabolism by controlling translation and decay of target mRNAs
Q31143553	COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia
Q47142228	CORNAS: coverage-dependent RNA-Seq analysis of gene expression data without biological replicates
Q49717521	CPAP3 proteins in the mineralized cuticle of a decapod crustacean.
Q59357387	CRACR2A-Mediated TCR Signaling Promotes Local Effector Th1 and Th17 Responses
Q31003638	CRCDA--Comprehensive resources for cancer NGS data analysis
Q91003247	CRISPR-Cas9 Circular Permutants as Programmable Scaffolds for Genome Modification
Q41257651	CRISPR-mediated genetic interaction profiling identifies RNA binding proteins controlling metazoan fitness
Q33628110	CRISPR/Cas9-mediated targeted gene correction in amyotrophic lateral sclerosis patient iPSCs.
Q33573686	CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells
Q37277340	CRIg-expressing peritoneal macrophages are associated with disease severity in patients with cirrhosis and ascites.
Q60923530	CRlncRC: a machine learning-based method for cancer-related long noncoding RNA identification using integrated features
Q35635081	CSR-1 and P granules suppress sperm-specific transcription in the C. elegans germline.
Q41863211	CTCF and Rad21 act as host cell restriction factors for Kaposi's sarcoma-associated herpesvirus (KSHV) lytic replication by modulating viral gene transcription
Q47320884	CURLY LEAF Regulates Gene Sets Coordinating Seed Size and Lipid Biosynthesis.
Q102211021	Cadmium stress dictates central carbon flux and alters membrane composition in Streptococcus pneumoniae
Q36713390	Cajal bodies are linked to genome conformation
Q28649840	Calcareous sponge genomes reveal complex evolution of α-carbonic anhydrases and two key biomineralization enzymes
Q34445449	Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes.
Q37070091	Calcium Signaling Pathway Genes RUNX2 and CACNA1C Are Associated With Calcific Aortic Valve Disease
Q90912684	Calcium-signaling proteins mediate the plant transcriptomic response during a well-established Xanthomonas campestris pv. campestris infection
Q30662528	Calculating sample size estimates for RNA sequencing data.
Q34076335	Calling amplified haplotypes in next generation tumor sequence data
Q40638054	Caloric restriction delays age-related methylation drift
Q30772562	Caloric restriction improves diabetes-induced cognitive deficits by attenuating neurogranin-associated calcium signaling in high-fat diet-fed mice
Q57041652	Caloric restriction promotes functional changes involving short-chain fatty acid biosynthesis in the rat gut microbiota
Q36018603	Cancer-associated ASXL1 mutations may act as gain-of-function mutations of the ASXL1-BAP1 complex
Q92647495	Cancer-associated mutations in DICER1 RNase IIIa and IIIb domains exert similar effects on miRNA biogenesis
Q27317563	Candida albicans Inhibits Pseudomonas aeruginosa Virulence through Suppression of Pyochelin and Pyoverdine Biosynthesis
Q91682950	Candida albicans quorum-sensing molecule farnesol modulates staphyloxanthin production and activates the thiol-based oxidative-stress response in Staphylococcus aureus
Q36916230	Candidate chemosensory genes in the Stemborer Sesamia nonagrioides
Q64053213	Candidate loci for the kernel row number in maize revealed by a combination of transcriptome analysis and regional association mapping
Q28547714	Canine spontaneous head and neck squamous cell carcinomas represent their human counterparts at the molecular level
Q37345655	Canonical Wnt signalling regulates nuclear export of Setdb1 during skeletal muscle terminal differentiation
Q38405632	Canonical and cellular pathways timing gamete release in Acropora digitifera, Okinawa, Japan.
Q97643263	Capsidiol-related genes are highly expressed in response to Colletotrichum scovillei during Capsicum annuum fruit development stages
Q38752825	Capture-C reveals preformed chromatin interactions between HIF-binding sites and distant promoters
Q36483718	Capturing microRNA targets using an RNA-induced silencing complex (RISC)-trap approach
Q61031838	Capturing the Onset of PRC2-Mediated Repressive Domain Formation
Q91666287	Carcinoembryonic antigen cell adhesion molecule 6 (CEACAM6) in Pancreatic Ductal Adenocarcinoma (PDA): An integrative analysis of a novel therapeutic target
Q91790482	Cardiac Toxicity From Ethanol Exposure in Human-Induced Pluripotent Stem Cell-Derived Cardiomyocytes
Q28238421	Cardiac fibroblast-derived microRNA passenger strand-enriched exosomes mediate cardiomyocyte hypertrophy
Q39881934	Cardiac transcriptome and dilated cardiomyopathy genes in zebrafish
Q37172278	Cardiovascular transcriptomics and epigenomics using next-generation sequencing: challenges, progress, and opportunities
Q30386085	Carriage of Extended-Spectrum Beta-Lactamase-Plasmids Does Not Reduce Fitness but Enhances Virulence in Some Strains of Pandemic E. coli Lineages.
Q64884468	Casein kinase 2 mediated phosphorylation of Spt6 modulates histone dynamics and regulates spurious transcription.
Q92862864	Catabolism of Nucleic Acids by a Cystic Fibrosis Pseudomonas aeruginosa Isolate: An Adaptive Pathway to Cystic Fibrosis Sputum Environment
Q90317246	Catalytically inactive Dnmt3b rescues mouse embryonic development by accessory and repressive functions
Q34778547	Causes and consequences of chromatin variation between inbred mice.
Q39899043	Cdk1 activity acts as a quantitative platform for coordinating cell cycle progression with periodic transcription
Q38745759	CeFra-seq: Systematic mapping of RNA subcellular distribution properties through cell fractionation coupled to deep-sequencing
Q90484101	Cell Type Purification by Single-Cell Transcriptome-Trained Sorting
Q37679013	Cell Type-Specific Epigenomic Analysis Reveals a Uniquely Closed Chromatin Architecture in Mouse Rod Photoreceptors.
Q49178684	Cell Type-Specific Survey of Epigenetic Modifications by Tandem Chromatin Immunoprecipitation Sequencing.
Q40053085	Cell differentiation defines acute and chronic infection cell types in Staphylococcus aureus.
Q38463554	Cell type-specific responses to salinity - the epidermal bladder cell transcriptome of Mesembryanthemum crystallinum
Q50925044	Cell type-specific transcriptome profiling in C. elegans using the Translating Ribosome Affinity Purification technique.
Q57486541	Cell-Specific Transcriptome Analysis Shows That Adult Pillar and Deiters' Cells Express Genes Encoding Machinery for Specializations of Cochlear Hair Cells
Q28975777	Cell-fate determination by ubiquitin-dependent regulation of translation
Q37138688	Cell-type, allelic, and genetic signatures in the human pancreatic beta cell transcriptome
Q94561403	Cellular Analysis and Comparative Transcriptomics Reveal the Tolerance Mechanisms of Candida tropicalis Toward Phenol
Q93152981	Cellular Importin-α3 Expression Dynamics in the Lung Regulate Antiviral Response Pathways against Influenza A Virus Infection
Q64902038	Cellular and Molecular Responses Unique to Major Injury Are Dispensable for Planarian Regeneration.
Q92650714	Cellular and Transcriptional Responses of Resistant and Susceptible Cultivars of Alfalfa to the Root Lesion Nematode, Pratylenchus penetrans
Q36215356	Cellular and molecular characterization of a stem rust resistance locus on wheat chromosome 7AL
Q42778315	Cellular and molecular characterizations of a slow-growth variant provide insights into the fast growth of bamboo.
Q55346318	Cellular stress alters 3'UTR landscape through alternative polyadenylation and isoform-specific degradation.
Q34107011	Cellulolytic Streptomyces strains associated with herbivorous insects share a phylogenetically linked capacity to degrade lignocellulose
Q34422726	Cerebrospinal fluid ceramides from patients with multiple sclerosis impair neuronal bioenergetics
Q42935285	Cfp1 is required for gene expression-dependent H3K4 trimethylation and H3K9 acetylation in embryonic stem cells
Q35602188	ChIP-Seq and RNA-Seq analyses identify components of the Wnt and Fgf signaling pathways as Prep1 target genes in mouse embryonic stem cells
Q28492571	ChIP-Seq and RNA-Seq reveal an AmrZ-mediated mechanism for cyclic di-GMP synthesis and biofilm development by Pseudomonas aeruginosa
Q33741186	ChIP-seq analysis of the LuxR-type regulator VjbR reveals novel insights into the Brucella virulence gene expression network.
Q42108069	Chance and necessity in the genome evolution of endosymbiotic bacteria of insects
Q88774997	Changes in Corticotrope Gene Expression Upon Increased Expression of Peptidylglycine α-Amidating Monooxygenase
Q55514797	Changes in gene expression in Camelina sativa roots and vegetative tissues in response to salinity stress.
Q54210795	Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages.
Q58589727	Changes in long non-coding RNA expression profiles related to the antagonistic effects of Escherichia coli F17 on lamb spleens
Q61443253	Changes in long-range rDNA-genomic interactions associate with altered RNA polymerase II gene programs during malignant transformation
Q36311716	Changes in miRNA in the lung and whole blood after whole thorax irradiation in rats
Q50997045	Changes in ovarian gene expression profiles and plasma hormone levels in maturing European eel (Anguilla anguilla); Biomarkers for broodstock selection.
Q28535423	Changes in the expression of miR-381 and miR-495 are inversely associated with the expression of the MDR1 gene and development of multi-drug resistance
Q47896362	Changes in the expression profiles of claudins during gonocyte differentiation and in seminomas
Q36238604	Changes of Ovarian microRNA Profile in Long-Living Ames Dwarf Mice during Aging
Q35128373	Characterisation and comparison of lactating mouse and bovine mammary gland miRNomes.
Q36024184	Characterisation of Candida within the Mycobiome/Microbiome of the Lower Respiratory Tract of ICU Patients
Q36245642	Characterisation of Early-Life Fecal Microbiota in Susceptible and Healthy Pigs to Post-Weaning Diarrhoea
Q39247842	Characterisation of Plasmodium falciparum populations selected on the human endothelial receptors P-selectin, E-selectin, CD9 and CD151.
Q35004352	Characteristics of microRNAs enriched in specific cell types and primary tissue types in solid organs
Q35949181	Characterization and Profiling of Liver microRNAs by RNA-sequencing in Cattle Divergently Selected for Residual Feed Intake
Q42251093	Characterization and RNA-seq analysis of underperformer, an activation-tagged potato mutant
Q64070242	Characterization and comparative analyses of transcriptomes of cloned and fertilized porcine pre-implantation embryos
Q58605404	Characterization and expression profiling of microRNAs in response to plant feeding in two host-plant strains of the lepidopteran pest Spodoptera frugiperda
Q49978804	Characterization and fine mapping of qkc7.03: a major locus for kernel cracking in maize.
Q35051846	Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling.
Q92713196	Characterization and mechanism of the effects of Mg-Fe layered double hydroxide nanoparticles on a marine bacterium: new insights from genomic and transcriptional analyses
Q92650277	Characterization of D-Arabitol as Newly Discovered Carbon Source of Bacillus methanolicus
Q38442689	Characterization of Embryo Transcriptome of Gynogenetic Olive Flounder Paralichthys olivaceus
Q37553280	Characterization of Gut Microbiome Dynamics in Developing Pekin Ducks and Impact of Management System
Q64252969	Characterization of Non-heading Mutation in Heading Chinese Cabbage ( L. ssp. )
Q55269381	Characterization of Transcription Termination-Associated RNAs: New Insights into their Biogenesis, Tailing, and Expression in Primary Tumors.
Q47874491	Characterization of a FOXG1:TLE1 transcriptional network in glioblastoma initiating cells.
Q33851540	Characterization of a genetic mouse model of lung cancer: a promise to identify Non-Small Cell Lung Cancer therapeutic targets and biomarkers
Q37297928	Characterization of a novel long noncoding RNA, SCAL1, induced by cigarette smoke and elevated in lung cancer cell lines
Q51161145	Characterization of a nuclear pore protein sheds light on the roles and composition of the Toxoplasma gondii nuclear pore complex.
Q36383853	Characterization of basal and lipopolysaccharide-induced microRNA expression in equine peripheral blood mononuclear cells using Next-Generation Sequencing
Q52724801	Characterization of brain tumor initiating cells isolated from an animal model of CNS primitive neuroectodermal tumors.
Q34287861	Characterization of cultured cholangiocytes isolated from livers of patients with primary sclerosing cholangitis
Q42688383	Characterization of distinct subpopulations of hepatic macrophages in HFD/obese mice
Q37339918	Characterization of factors underlying the metabolic shifts in developing kernels of colored maize.
Q35981964	Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants
Q37123743	Characterization of intracellular growth regulator icgR by utilizing transcriptomics to identify mediators of pathogenesis in Shigella flexneri
Q35892663	Characterization of long non-coding RNA transcriptome in clear-cell renal cell carcinoma by next-generation deep sequencing.
Q60927182	Characterization of miRNA profiles in the mammary tissue of dairy cattle in response to heat stress
Q36340868	Characterization of novel genomic alterations and therapeutic approaches using acute megakaryoblastic leukemia xenograft models
Q41972789	Characterization of p-hydroxycinnamate catabolism in a soil Actinobacterium
Q56985358	Characterization of peritoneal cells from cats with experimentally-induced feline infectious peritonitis (FIP) using RNA-seq
Q92520678	Characterization of porcine extraembryonic endoderm cells
Q60044034	Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita
Q41110346	Characterization of the Poplar Pan-Genome by Genome-Wide Identification of Structural Variation.
Q55315347	Characterization of the basic helix-loop-helix gene family and its tissue-differential expression in response to salt stress in poplar.
Q93036979	Characterization of the human GnRH neuron developmental transcriptome using a GNRH1-TdTomato reporter line in human pluripotent stem cells
Q35158295	Characterization of the human cumulus cell transcriptome during final follicular maturation and ovulation.
Q33770060	Characterization of the small RNA transcriptomes of androgen dependent and independent prostate cancer cell line by deep sequencing
Q35864273	Characterization of the transcriptome and gene expression of four different tissues in the ecologically relevant sea urchin Arbacia lixula using RNA-seq.
Q35213241	Characterization of the transcriptome of fast and slow muscle myotomal fibres in the pacu (Piaractus mesopotamicus)
Q28650122	Characterization of the transcriptome of nascent hair cells and identification of direct targets of the Atoh1 transcription factor
Q52597912	Characterization of the trehalose utilization operon in Streptococcus mutans reveals that the TreR transcriptional regulator is involved in stress response pathways and toxin production.
Q34263517	Characterization of the uterine leiomyoma microRNAome by deep sequencing.
Q35080790	Characterizing the infection-induced transcriptome of Nasonia vitripennis reveals a preponderance of taxonomically-restricted immune genes
Q36635139	Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis
Q41629015	Chd2 regulates chromatin for proper gene expression toward differentiation in mouse embryonic stem cells
Q41374920	Chd5 Regulates MuERV-L/MERVL Expression in Mouse Embryonic Stem Cells Via H3K27me3 Modification and Histone H3.1/H3.2.
Q34070114	Chemical and transcriptional responses of Norway spruce genotypes with different susceptibility to Heterobasidion spp. infection
Q92024370	Chemical-genetic profiling reveals limited cross-resistance between antimicrobial peptides with different modes of action
Q42376063	Chemosensing of honeybee parasite, Varroa destructor: Transcriptomic analysis
Q92734629	Chicdiff: a computational pipeline for detecting differential chromosomal interactions in Capture Hi-C data
Q37834629	Chlamydia preserves the mitochondrial network necessary for replication via microRNA-dependent inhibition of fission
Q35710313	Chlamydia trachomatis In Vivo to In Vitro Transition Reveals Mechanisms of Phase Variation and Down-Regulation of Virulence Factors
Q46855910	Chlorate reduction in Shewanella algae ACDC is a recently acquired metabolism characterized by gene loss, suboptimal regulation and oxidative stress
Q28709541	Chlorobaculum tepidum TLS displays a complex transcriptional response to sulfide addition
Q61449468	Choice of Alternative Polyadenylation Sites, Mediated by the RNA-Binding Protein Elavl3, Plays a Role in Differentiation of Inhibitory Neuronal Progenitors
Q93009337	Choice of library size normalization and statistical methods for differential gene expression analysis in balanced two-group comparisons for RNA-seq studies
Q37209225	Choline Catabolism in Burkholderia thailandensis Is Regulated by Multiple Glutamine Amidotransferase 1-Containing AraC Family Transcriptional Regulators
Q48671012	Cholinergic Surveillance over Hippocampal RNA Metabolism and Alzheimer's-Like Pathology.
Q50938874	Chromatin Accessibility Landscape of Cutaneous T Cell Lymphoma and Dynamic Response to HDAC Inhibitors.
Q58714578	Chromatin de-condensation by switching substrate elasticity
Q36510611	Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development
Q38380810	Chromatin immunoprecipitation from fixed clinical tissues reveals tumor-specific enhancer profiles
Q88931668	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield
Q92859353	Chromatin landscapes reveal developmentally encoded transcriptional states that define human glioblastoma
Q92602422	Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation
Q58783123	Chromatin regulates IL-33 release and extracellular cytokine activity
Q99564802	Chromatin remodeling in bovine embryos indicates species-specific regulation of genome activation
Q40701796	Chromatin segmentation based on a probabilistic model for read counts explains a large portion of the epigenome
Q46060358	Chromatin states define tumour-specific T cell dysfunction and reprogramming.
Q37080352	Chromatin variation associated with liver metabolism is mediated by transposable elements
Q91643318	Chromosome doubling mediates superior drought tolerance in Lycium ruthenicum via abscisic acid signaling
Q37306058	Chromosome-wide mechanisms to decouple gene expression from gene dose during sex-chromosome evolution.
Q35893771	Chronic DNA Replication Stress Reduces Replicative Lifespan of Cells by TRP53-Dependent, microRNA-Assisted MCM2-7 Downregulation
Q41860875	Chronic LSD alters gene expression profiles in the mPFC relevant to schizophrenia
Q89965209	Chronic Sublethal Aluminum Exposure and Avena fatua Caryopsis Colonization Influence Gene Expression of Fusarium avenaceum F.a.1.
Q41923424	Chronic exposure to TGFβ1 regulates myeloid cell inflammatory response in an IRF7-dependent manner
Q36285554	Chronic nicotine differentially affects murine transcriptome profiling in isolated cortical interneurons and pyramidal neurons.
Q97422377	Chrysanthemum CmWRKY53 negatively regulates the resistance of chrysanthemum to the aphid Macrosiphoniella sanborni
Q55406484	Cigarette smoke and chewing tobacco alter expression of different sets of miRNAs in oral keratinocytes.
Q52879320	Circadian behavior is light-reprogrammed by plastic DNA methylation.
Q35745008	Circadian disruption-induced microRNAome deregulation in rat mammary gland tissues
Q36681406	Circadian-disruption-induced gene expression changes in rodent mammary tissues
Q97093992	Circular RNA Expression Profiles and the Pro-tumorigenic Function of CircRNA_10156 in Hepatitis B Virus-Related Liver Cancer
Q92905992	Circular and Micro RNAs from Arabidopsis thaliana Flowers Are Simultaneously Isolated from AGO-IP Libraries
Q89136032	Circular permutation profiling by deep sequencing libraries created using transposon mutagenesis
Q36077655	Circulating Extracellular RNA Markers of Liver Regeneration
Q37296946	Circulating Plasma Levels of MicroRNA-21 and MicroRNA-221 Are Potential Diagnostic Markers for Primary Intrahepatic Cholangiocarcinoma
Q49284017	Circulating miRNAs as diagnostic biomarkers for adolescent idiopathic scoliosis.
Q64282601	Circulating miRNAs as non-invasive biomarkers to predict aggressive prostate cancer after radical prostatectomy
Q38645751	Circulating microRNA profiles of Hendra virus infection in horses
Q41673524	Circulating microRNAs and Bioinformatics Tools to Discover Novel Diagnostic Biomarkers of Pediatric Diseases.
Q90929760	Circulating microRNAs in Fabry Disease
Q41371417	Cis-Regulatory Divergence in Gene Expression between Two Thermally Divergent Yeast Species
Q21184018	Cistrome: an integrative platform for transcriptional regulation studies
Q35938089	Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology
Q47304550	Classifying next-generation sequencing data using a zero-inflated Poisson model
Q30575493	Cleavage of E-cadherin and β-catenin by calpain affects Wnt signaling and spheroid formation in suspension cultures of human pluripotent stem cells
Q35540606	ClinSeK: a targeted variant characterization framework for clinical sequencing
Q62487254	Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii
Q92738402	Clinical significance and prospective molecular mechanism of C‑C motif chemokine receptors in patients with early‑stage pancreatic ductal adenocarcinoma after pancreaticoduodenectomy
Q92557223	Clinical value of microRNA-198-5p downregulation in lung adenocarcinoma and its potential pathways
Q64106586	Clinically Relevant Biomarker Discovery in High-Risk Recurrent Neuroblastoma
Q88764396	Clonal analysis of Notch1-expressing cells reveals the existence of unipotent stem cells that retain long-term plasticity in the embryonic mammary gland
Q33908547	Clonal competition in BcrAbl-driven leukemia: how transplantations can accelerate clonal conversion.
Q41945096	Clonal expansion capacity defines two consecutive developmental stages of long-term hematopoietic stem cells
Q28833604	Cloning, expression and characterization of a β-D-xylosidase from Lactobacillus rossiae DSM 15814(T)
Q34156140	Cloud-scale RNA-sequencing differential expression analysis with Myrna
Q61445276	Cluster analysis of replicated alternative polyadenylation data using canonical correlation analysis
Q35758427	Clustering and Differential Alignment Algorithm: Identification of Early Stage Regulators in the Arabidopsis thaliana Iron Deficiency Response
Q98613234	CmBES1 is a regulator of boundary formation in chrysanthemum ray florets
Q64252076	Co-Expression Network Analysis and Hub Gene Selection for High-Quality Fiber in Upland Cotton (Gossypium hirsutum) Using RNA Sequencing Analysis
Q58761894	Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression
Q30882929	Co-expression analysis of high-throughput transcriptome sequencing data with Poisson mixture models
Q91707761	Co-infection of Mycoplasma gallisepticum and Escherichia coli Triggers Inflammatory Injury Involving the IL-17 Signaling Pathway
Q64118256	Co-targeting RNA Polymerases IV and V Promotes Efficient De Novo DNA Methylation in Arabidopsis
Q34163151	Cocaine dynamically regulates heterochromatin and repetitive element unsilencing in nucleus accumbens
Q27934650	Codependency of H2B monoubiquitination and nucleosome reassembly on Chd1.
Q111347833	Coding and long non-coding RNAs regulating adult migratory locust (Locusta migratoria) brain polyphenism revealed via whole transcriptome analyses
Q36014081	Codon-Driven Translational Efficiency Is Stable across Diverse Mammalian Cell States.
Q51046963	Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl.
Q36180677	Cohesin loss alters adult hematopoietic stem cell homeostasis, leading to myeloproliferative neoplasms
Q37358016	Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
Q92085583	Cold seawater induces early sexual developmental stages in the BPG axis of European eel males
Q97643536	ColoType: a forty gene signature for consensus molecular subtyping of colorectal cancer tumors using whole-genome assay or targeted RNA-sequencing
Q35554615	Columnar apple primary roots share some features of the columnar-specific gene expression profile of aerial plant parts as evidenced by RNA-Seq analysis
Q64962659	Combating viral contaminants in CHO cells by engineering innate immunity.
Q93106685	Combination treatment with n-3 polyunsaturated fatty acids and ursodeoxycholic acid dissolves cholesterol gallstones in mice
Q40575939	Combinatorial DNA Rearrangement Facilitates the Origin of New Genes in Ciliates
Q38872795	Combinatorial DNA methylation codes at repetitive elements
Q92159592	Combinatorial action of NF-Y and TALE at embryonic enhancers defines distinct gene expression programs during zygotic genome activation in zebrafish
Q35231141	Combinatorial control of light induced chromatin remodeling and gene activation in Neurospora
Q30414675	Combinatorial epigenetic patterns as quantitative predictors of chromatin biology
Q33725665	Combinatory Evaluation of Transcriptome and Metabolome Profiles of Low Temperature-induced Resistant Ascites Syndrome in Broiler Chickens.
Q37216739	Combinatory annotation of cell membrane receptors and signalling pathways of Bombyx mori prothoracic glands
Q33362399	Combined Chlorophyll Fluorescence and Transcriptomic Analysis Identifies the P3/P4 Transition as a Key Stage in Rice Leaf Photosynthetic Development.
Q93155666	Combined Treatment with L-Carnitine and Nicotinamide Riboside Improves Hepatic Metabolism and Attenuates Obesity and Liver Steatosis
Q35700222	Combined analysis of gene regulatory network and SNV information enhances identification of potential gene markers in mouse knockout studies with small number of samples
Q28830095	Combined chemical-genetic approach identifies cytosolic HSP70 dependence in rhabdomyosarcoma
Q41005158	Combined genetic and transcriptomic analysis reveals three major signalling pathways activated by Myc-LCOs in Medicago truncatula
Q46257560	Combined genome and transcriptome sequencing to investigate the plant cell wall degrading enzyme system in the thermophilic fungus Malbranchea cinnamomea
Q39706220	Combined targeting of TGF-β, EGFR and HER2 suppresses lymphangiogenesis and metastasis in a pancreatic cancer model.
Q36121141	Combining dependent P-values with an empirical adaptation of Brown's method
Q34422824	Combining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development
Q35221326	Combining multidimensional genomic measurements for predicting cancer prognosis: observations from TCGA.
Q36323325	Commensal Microbes and Hair Follicle Morphogenesis Coordinately Drive Treg Migration into Neonatal Skin
Q35712603	Common and specific downstream signaling targets controlled by Tlr2 and Tlr5 innate immune signaling in zebrafish
Q55005973	Common and unique transcriptional responses to dietary restriction and loss of insulin receptor substrate 1 (IRS1) in mice.
Q34014170	Common genetic variants modulate pathogen-sensing responses in human dendritic cells
Q42830893	Common genetic variation drives molecular heterogeneity in human iPSCs
Q27314909	Common transcriptional mechanisms for visual photoreceptor cell differentiation among Pancrustaceans
Q35636736	Comparative Analysis of Anther Transcriptome Profiles of Two Different Rice Male Sterile Lines Genotypes under Cold Stress
Q61816794	Comparative Analysis of Developmental Transcriptome Maps of Arabidopsis thaliana and Solanum lycopersicum
Q90193993	Comparative Analysis of Proteomics and Transcriptomics during Fertility Transition in a Two-Line Hybrid Rice Line Wuxiang S
Q36010896	Comparative Analysis of Transcriptomes among Bombyx mori Strains and Sexes Reveals the Genes Regulating Melanic Morph and the Related Phenotypes
Q64117882	Comparative Analysis of Whole-Transcriptome RNA Expression in MDCK Cells Infected With the H3N2 and H5N1 Canine Influenza Viruses
Q92757268	Comparative Analysis of the Liver Transcriptome among Cattle Breeds Using RNA-seq
Q64054739	Comparative Epigenomics Reveals that RNA Polymerase II Pausing and Chromatin Domain Organization Control Nematode piRNA Biogenesis
Q30278914	Comparative Genomics Provides Insight into the Diversity of the Attaching and Effacing Escherichia coli Virulence Plasmids
Q52430960	Comparative Genomics of the Baltic Sea Toxic Cyanobacteria Nodularia spumigena UHCC 0039 and Its Response to Varying Salinity.
Q36927893	Comparative Leaf and Root Transcriptomic Analysis of two Rice Japonica Cultivars Reveals Major Differences in the Root Early Response to Osmotic Stress
Q92884509	Comparative Metagenomics Reveals Enhanced Nutrient Cycling Potential after 2 Years of Biochar Amendment in a Tropical Oxisol
Q55294535	Comparative Methylome Analysis Reveals Perturbation of Host Epigenome in Chestnut Blight Fungus by a Hypovirus.
Q49923865	Comparative Phylogenetic and Expression Analysis of Small GTPases Families in Legume and Non-Legume Plants.
Q57294528	Comparative RNA-Seq Analysis of High- and Low-Oil Yellow Horn During Embryonic Development
Q30455450	Comparative RNA-Seq and microarray analysis of gene expression changes in B-cell lymphomas of Canis familiaris.
Q34510113	Comparative RNA-Seq based dissection of the regulatory networks and environmental stimuli underlying Vibrio parahaemolyticus gene expression during infection
Q37615024	Comparative RNA-Sequence Transcriptome Analysis of Phenolic Acid Metabolism in Salvia miltiorrhiza, a Traditional Chinese Medicine Model Plant.
Q60936074	Comparative RNA-sequencing-based transcriptome profiling of buds from profusely flowering 'Qinguan' and weakly flowering 'Nagafu no. 2' apple varieties reveals novel insights into the regulatory mechanisms underlying floral induction
Q36132969	Comparative Sigma Factor-mRNA Levels in Mycobacterium marinum under Stress Conditions and during Host Infection
Q28354172	Comparative Temporal Transcriptome Profiling of Wheat near Isogenic Line Carrying Lr57 under Compatible and Incompatible Interactions
Q58618193	Comparative Transcriptional Profiling and Physiological Responses of Two Contrasting Oat Genotypes under Salt Stress
Q37135502	Comparative Transcriptional Profiling of Primed and Non-primed Rice Seedlings under Submergence Stress
Q64076774	Comparative Transcriptome Analyses Provide Potential Insights into the Molecular Mechanisms of Astaxanthin in the Protection against Alcoholic Liver Disease in Mice
Q92546707	Comparative Transcriptome Analyses Revealed Conserved and Novel Responses to Cold and Freezing Stress in Brassica napus L
Q30851130	Comparative Transcriptome Analyses of Resistant and Susceptible Near-Isogenic Wheat Lines following Inoculation with Blumeria graminis f. sp. tritici
Q61453159	Comparative Transcriptome Analysis Identifies Genes Involved in Diosgenin Biosynthesis in L
Q46258691	Comparative Transcriptome Analysis Provides Insights into Differentially Expressed Genes and Long Non-Coding RNAs between Ovary and Testis of the Mud Crab (Scylla paramamosain).
Q48356493	Comparative Transcriptome Analysis Reveals Hormone Signaling Genes Involved in the Launch of Culm-Shape Differentiation in Dendrocalamus sinicus.
Q91972025	Comparative Transcriptome Analysis Reveals Molecular Basis Underlying Fast Growth of the Selectively Bred Pacific Oyster, Crassostrea gigas
Q35699530	Comparative Transcriptome Analysis Reveals Sex-Biased Gene Expression in Juvenile Chinese Mitten Crab Eriocheir sinensis
Q37528523	Comparative Transcriptome Analysis between Broccoli (Brassica oleracea var. italica) and Wild Cabbage (Brassica macrocarpa Guss.) in Response to Plasmodiophora brassicae during Different Infection Stages
Q35664882	Comparative Transcriptome Analysis of Cultivated and Wild Watermelon during Fruit Development
Q35951212	Comparative Transcriptome Analysis of Fetal Skin Reveals Key Genes Related to Hair Follicle Morphogenesis in Cashmere Goats
Q38453183	Comparative Transcriptome Analysis of Genes Involved in GA-GID1-DELLA Regulatory Module in Symbiotic and Asymbiotic Seed Germination of Anoectochilus roxburghii (Wall.) Lindl. (Orchidaceae).
Q46236683	Comparative Transcriptome Analysis of Male and Female Conelets and Development of Microsatellite Markers in Pinus bungeana, an Endemic Conifer in China
Q38769107	Comparative Transcriptome Analysis of Raccoon Dog Skin to Determine Melanin Content in Hair and Melanin Distribution in Skin
Q64080196	Comparative Transcriptome Combined with Proteome Analyses Revealed Key Factors Involved in Alfalfa () Response to Waterlogging Stress
Q91823779	Comparative Transcriptome Profiling Reveals Compatible and Incompatible Patterns of Potato Toward Phytophthora infestans
Q53705203	Comparative Transcriptome Profiling of Rice Near-Isogenic Line Carrying Xa23 under Infection of Xanthomonas oryzae pv. oryzae.
Q38444311	Comparative Transcriptome Reconstruction of Four Hypericum Species Focused on Hypericin Biosynthesis
Q99711613	Comparative Transcriptome and Proteome Analysis of Salt-Tolerant and Salt-Sensitive Sweet Potato and Overexpression of IbNAC7 Confers Salt Tolerance in Arabidopsis
Q58795098	Comparative Transcriptomic Analysis of Immune-Related Gene Expression in Duck Embryo Fibroblasts Following Duck Tembusu Virus Infection
Q64077221	Comparative Transcriptomic Analysis of MAPK-Mediated Regulation of Sectorization in Cryphonectria parasitica
Q33877301	Comparative Transcriptomic Analysis of Race 1 and Race 4 of Fusarium oxysporum f. sp. cubense Induced with Different Carbon Sources
Q90189098	Comparative Transcriptomics Analyses across Species, Organs, and Developmental Stages Reveal Functionally Constrained lncRNAs
Q90055061	Comparative Transcriptomics Analysis of the Responses of the Filamentous Fungus Glarea lozoyensis to Different Carbon Sources
Q42119880	Comparative analysis of Lactobacillus plantarum WCFS1 transcriptomes by using DNA microarray and next-generation sequencing technologies
Q61446216	Comparative analysis of differential gene expression analysis tools for single-cell RNA sequencing data
Q35186314	Comparative analysis of human tissue interactomes reveals factors leading to tissue-specific manifestation of hereditary diseases
Q57295862	Comparative analysis of selection mode reveals different evolutionary rate and expression pattern in Arachis duranensis and Arachis ipaënsis duplicated genes
Q91728204	Comparative analysis of sugarcane root transcriptome in response to the plant growth-promoting Burkholderia anthina MYSP113
Q42776355	Comparative analysis of testis transcriptomes from triploid and fertile diploid cyprinid fish
Q90036418	Comparative analysis of the male inflorescence transcriptome profiles of an ms22 mutant of maize
Q94570394	Comparative analysis of tissue-specific transcriptomic responses to nitrogen stress in spinach (Spinacia oleracea)
Q92697532	Comparative and functional genomics of the protozoan parasite Babesia divergens highlighting the invasion and egress processes
Q34964421	Comparative and functional genomics provide insights into the pathogenicity of dermatophytic fungi
Q39544929	Comparative assessment of differential network analysis methods
Q30982079	Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data
Q57093145	Comparative de novo transcriptome analysis of male and female Sea buckthorn
Q30874439	Comparative evaluation of gene set analysis approaches for RNA-Seq data.
Q35082261	Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome
Q55024228	Comparative expression analysis identifies the respiratory transition-related miRNAs and their target genes in tissues of metamorphosing Chinese giant salamander (Andrias davidianus).
Q89497099	Comparative expression analysis in small cell lung carcinoma reveals neuroendocrine pattern change in primary tumor versus lymph node metastases
Q118162932	Comparative genome and transcriptome analysis reveal the medicinal basis and environmental adaptation of artificially cultivated Taiwanofungus camphoratus
Q33786619	Comparative genome and transcriptome analysis reveals distinctive surface characteristics and unique physiological potentials of Pseudomonas aeruginosa ATCC 27853
Q89983765	Comparative genome-centric analysis reveals seasonal variation in the function of coral reef microbiomes
Q47328679	Comparative genomics and transcriptome analysis of Lactobacillus rhamnosus ATCC 11443 and the mutant strain SCT-10-10-60 with enhanced L-lactic acid production capacity
Q33799167	Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli
Q49542308	Comparative genomics of Fusarium oxysporum f. sp. melonis reveals the secreted protein recognized by the Fom-2 resistance gene in melon.
Q37139351	Comparative genomics of drug resistance in Trypanosoma brucei rhodesiense
Q21090491	Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy
Q35039372	Comparative genomics reveals candidate carotenoid pathway regulators of ripening watermelon fruit.
Q88764423	Comparative mRNA and miRNA expression in European mouflon (Ovis musimon) and sheep (Ovis aries) provides novel insights into the genetic mechanisms for female reproductive success
Q37677337	Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis.
Q35218278	Comparative metabolic and transcriptional analysis of a doubled diploid and its diploid citrus rootstock (C. junos cv. Ziyang xiangcheng) suggests its potential value for stress resistance improvement
Q28658407	Comparative metabolism of cellulose, sophorose and glucose in Trichoderma reesei using high-throughput genomic and proteomic analyses
Q41811808	Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions
Q35261550	Comparative phenotypic analysis of the major fungal pathogens Candida parapsilosis and Candida albicans
Q37680364	Comparative ribosome profiling reveals extensive translational complexity in different Trypanosoma brucei life cycle stages.
Q47097352	Comparative ribosome profiling uncovers a dominant role for translational control in Toxoplasma gondii
Q40065665	Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors
Q30699743	Comparative studies of differential gene calling using RNA-Seq data
Q34325821	Comparative study of RNA-seq- and microarray-derived coexpression networks in Arabidopsis thaliana.
Q38884738	Comparative tissue transcriptomics highlights dynamic differences among tissues but conserved metabolic transcript prioritization in preparation for arousal from torpor
Q42776498	Comparative transcript profiling of fertile and sterile flower buds from multiple-allele-inherited male sterility in Chinese cabbage (Brassica campestris L. ssp. pekinensis).
Q35938453	Comparative transcript profiling of resistant and susceptible peanut post-harvest seeds in response to aflatoxin production by Aspergillus flavus
Q41311799	Comparative transcriptional profiling of tildipirosin-resistant and sensitive Haemophilus parasuis
Q89573168	Comparative transcriptome analyses of adzuki bean weevil (Callosobruchus chinensis) response to hypoxia and hypoxia/hypercapnia
Q36315212	Comparative transcriptome analyses of flower development in four species of Achimenes (Gesneriaceae).
Q90114624	Comparative transcriptome analyses of fruit development among pears, peaches, and strawberries provide new insights into single sigmoid patterns
Q30301080	Comparative transcriptome analyses reveal core parasitism genes and suggest gene duplication and repurposing as sources of structural novelty.
Q28959159	Comparative transcriptome analysis among parental inbred and crosses reveals the role of dominance gene expression in heterosis in Drosophila melanogaster
Q40471923	Comparative transcriptome analysis between resistant and susceptible tomato allows the identification of lncRNA16397 conferring resistance to Phytophthora infestans by co-expressing glutaredoxin.
Q47650812	Comparative transcriptome analysis of Apis mellifera antennae of workers performing different tasks
Q58760183	Comparative transcriptome analysis of Eriocheir japonica sinensis response to environmental salinity
Q89146588	Comparative transcriptome analysis of Haematococcus pluvialis on astaxanthin biosynthesis in response to irradiation with red or blue LED wavelength
Q98158730	Comparative transcriptome analysis of Sclerotinia sclerotiorum revealed its response mechanisms to the biological control agent, Bacillus amyloliquefaciens
Q99614365	Comparative transcriptome analysis of Tilletia horrida infection in resistant and susceptible rice (Oryza sativa L.) male sterile lines reveals potential candidate genes and resistance mechanisms
Q55257383	Comparative transcriptome analysis of dikaryotic mycelia and mature fruiting bodies in the edible mushroom Lentinula edodes.
Q38302313	Comparative transcriptome analysis of epithelial and fiber cells in newborn mouse lenses with RNA sequencing
Q64256070	Comparative transcriptome analysis of resistant and susceptible kiwifruits in response to Pseudomonas syringae pv. Actinidiae during early infection
Q56347722	Comparative transcriptome analysis of the interaction between Actinidia chinensis var. chinensis and Pseudomonas syringae pv. actinidiae in absence and presence of acibenzolar-S-methyl
Q28652716	Comparative transcriptome analysis of two oysters, Crassostrea gigas and Crassostrea hongkongensis provides insights into adaptation to hypo-osmotic conditions
Q91749805	Comparative transcriptome analysis of two reproductive modes in Adiantum reniforme var. sinense targeted to explore possible mechanism of apogamy
Q37022997	Comparative transcriptome analysis on the alteration of gene expression in ayu (Plecoglossus altivelis) larvae associated with salinity change.
Q33788217	Comparative transcriptome analysis provides insights into molecular mechanisms for parthenocarpic fruit development in eggplant (Solanum melongena L.).
Q38613798	Comparative transcriptome analysis reveals differentially expressed genes associated with sex expression in garden asparagus (Asparagus officinalis).
Q42645394	Comparative transcriptome analysis reveals host-associated differentiation in Chilo suppressalis (Lepidoptera: Crambidae).
Q41318630	Comparative transcriptome analysis reveals key cadmium transport-related genes in roots of two pak choi (Brassica rapa L. ssp. chinensis) cultivars
Q64240429	Comparative transcriptome analysis reveals new molecular pathways for cucumber genes related to sex determination
Q58614774	Comparative transcriptome analysis to elucidate the enhanced thermotolerance of tea plants (Camellia sinensis) treated with exogenous calcium
Q47132268	Comparative transcriptome and proteome profiling of two Citrus sinensis cultivars during fruit development and ripening
Q47929256	Comparative transcriptome combined with morpho-physiological analyses revealed key factors for differential cadmium accumulation in two contrasting sweet sorghum genotypes
Q36343683	Comparative transcriptome profiling and morphology provide insights into endocarp cleaving of apricot cultivar (Prunus armeniaca L.).
Q89430475	Comparative transcriptome profiling of Blumeria graminis f. sp. tritici during compatible and incompatible interactions with sister wheat lines carrying and lacking Pm40
Q35665396	Comparative transcriptome profiling of Pyropia yezoensis (Ueda) M.S. Hwang & H.G. Choi in response to temperature stresses
Q92532021	Comparative transcriptome profiling of multi-ovary wheat under heterogeneous cytoplasm suppression
Q36102172	Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi.
Q34517011	Comparative transcriptome profiling of the early response to Magnaporthe oryzae in durable resistant vs susceptible rice (Oryza sativa L.) genotypes
Q33803383	Comparative transcriptomes analysis of the wing disc between two silkworm strains with different size of wings
Q92660614	Comparative transcriptomic analysis and structure prediction of novel Newt proteins
Q48113670	Comparative transcriptomic analysis of resistant and susceptible alfalfa cultivars (Medicago sativa L.) after thrips infestation.
Q64121320	Comparative transcriptomic analysis reveals genes regulating the germination of morphophysiologically dormant Paris polyphylla seeds during a warm stratification
Q33808206	Comparative transcriptomic and proteomic analyses provide insights into the key genes involved in high-altitude adaptation in the Tibetan pig
Q34521873	Comparative transcriptomics and metabolomics in a rhesus macaque drug administration study.
Q93272653	Comparative transcriptomics characterized the distinct biosynthetic abilities of terpenoid and paeoniflorin biosynthesis in herbaceous peony strains
Q41708893	Comparative transcriptomics of convergent evolution: different genes but conserved pathways underlie caste phenotypes across lineages of eusocial insects
Q36395140	Comparative transcriptomics of genetically divergent lines of chickens in response to Marek's disease virus challenge at cytolytic phase
Q90854502	Comparative transcriptomics of limb regeneration: Identification of conserved expression changes among three species of Ambystoma
Q34387616	Comparative transcriptomics of the saprobic and parasitic growth phases in Coccidioides spp.
Q35763938	Comparative transcriptomics reveals key differences in the response to milk oligosaccharides of infant gut-associated bifidobacteria.
Q37339803	Comparative virulence studies and transcriptome analysis of Staphylococcus aureus strains isolated from animals.
Q113307901	Compare Expression Profiles for Pre-defined Gene Groups with C-REx
Q31012573	Comparing the normalization methods for the differential analysis of Illumina high-throughput RNA-Seq data
Q34567462	Comparison and contrast of genes and biological pathways responding to Marek's disease virus infection using allele-specific expression and differential expression in broiler and layer chickens
Q90284158	Comparison between the Transcriptomes of 'KDML105' Rice and a Salt-Tolerant Chromosome Segment Substitution Line
Q41908349	Comparison of Analysis Tools for miRNA High Throughput Sequencing Using Nerve Crush as a Model
Q57929544	Comparison of Fecal Collection Methods for Microbiome and Metabolomics Studies
Q97522045	Comparison of Normalization Methods for Analysis of TempO-Seq Targeted RNA Sequencing Data
Q59335011	Comparison of Olfactory Genes in Two Species: Emphasis on Candidates Involved in the Detection of Type-II Sex Pheromones
Q39935210	Comparison of Small RNA Profiles of Glycine max and Glycine soja at Early Developmental Stages
Q38632422	Comparison of alternative approaches for analysing multi-level RNA-seq data.
Q96640115	Comparison of differential accessibility analysis strategies for ATAC-seq data
Q58106776	Comparison of gene co-networks analysis provide a systems view of rice (Oryza sativa L.) response to Tilletia horrida infection
Q54110483	Comparison of hepatic NRF2 and AHR binding in 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) treated mice demonstrates NRF2-independent PKM2 induction.
Q38467154	Comparison of larval and adult Drosophila astrocytes reveals stage-specific gene expression profiles
Q30863143	Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data
Q39635774	Comparison of methods to detect differentially expressed genes between single-cell populations.
Q64106712	Comparison of multi-tissue aging between human and mouse
Q31035102	Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster
Q58091192	Comparison of normalization approaches for gene expression studies completed with high-throughput sequencing
Q40460419	Comparison of normalization methods for differential gene expression analysis in RNA-Seq experiments: A matter of relative size of studied transcriptomes.
Q55175006	Comparison of normalization methods for the analysis of metagenomic gene abundance data.
Q41816553	Comparison of software packages for detecting differential expression in RNA-seq studies
Q64098178	Comparison of the microbiome, metabolome, and lipidome of obese and non-obese horses
Q92730035	Comparison of the myometrial transcriptome from singleton and twin pregnancies by RNA-Seq
Q97517319	Comparison of the transcriptomes of different life history stages of the freshwater Rhodophyte Thorea hispida
Q34461292	Comparison of total and cytoplasmic mRNA reveals global regulation by nuclear retention and miRNAs
Q42773423	Comparison of transcriptomes of wild-type and isothiazolone-resistant Pseudomonas aeruginosa by using RNA-seq
Q33774684	Comparison of transcriptomic landscapes of bovine embryos using RNA-Seq
Q30946677	Compartmentalized and contrasted response of ectomycorrhizal and soil fungal communities of Scots pine forests along elevation gradients in France and Spain
Q34336650	Competence for chemical reprogramming of sexual fate correlates with an intersexual molecular signature in Caenorhabditis elegans
Q90480797	Competing endogenous RNA network analysis reveals potential long non-coding RNAs as predictive biomarkers of gastric cancer
Q51564541	Competition between DNA methylation and transcription factors determines binding of NRF1.
Q38488598	Competition between virus-derived and endogenous small RNAs regulates gene expression in Caenorhabditis elegans.
Q42778050	Competitive Ability of Maize Pollen Grains Require Paralogous Serine Threonine Protein Kinases STK1 and STK2.
Q48269323	Complement Component 3 Adapts the Cerebrospinal Fluid for Leptomeningeal Metastasis
Q36602379	Complementary Post Transcriptional Regulatory Information is Detected by PUNCH-P and Ribosome Profiling
Q42774032	Complementary iTRAQ proteomics and RNA-seq transcriptomics reveal multiple levels of regulation in response to nitrogen starvation in Synechocystis sp. PCC 6803.
Q35826160	Complete Genome Sequence and Transcriptomic Analysis of the Novel Pathogen Elizabethkingia anophelis in Response to Oxidative Stress.
Q36162588	Complete Sequence and Analysis of Coconut Palm (Cocos nucifera) Mitochondrial Genome
Q36736372	Complete cardiac regeneration in a mouse model of myocardial infarction
Q35912909	Complete mitochondrial genome of the Verticillium-wilt causing plant pathogen Verticillium nonalfalfae
Q40965343	Complex Regulation Pathways of AmpC-Mediated β-Lactam Resistance in Enterobacter cloacae Complex.
Q31126351	Complex Sources of Variation in Tissue Expression Data: Analysis of the GTEx Lung Transcriptome
Q35944668	Complex and extensive post-transcriptional regulation revealed by integrative proteomic and transcriptomic analysis of metabolite stress response in Clostridium acetobutylicum
Q57298356	Complex gene response of herbicide-resistant strain under different glyphosate stresses
Q34500405	Complex modulation of the Aedes aegypti transcriptome in response to dengue virus infection
Q47177941	Complex relationships between chromatin accessibility, sequence divergence, and gene expression in A. thaliana
Q34497928	Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals
Q38734267	Complexities of gene expression patterns in natural populations of an extremophile fish (Poecilia mexicana, Poeciliidae).
Q28830331	Complexity and Dynamics of the Winemaking Bacterial Communities in Berries, Musts, and Wines from Apulian Grape Cultivars through Time and Space
Q55207936	Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression.
Q35054637	Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species
Q36341418	Compound heterozygous mutations in the noncoding RNU4ATAC cause Roifman Syndrome by disrupting minor intron splicing.
Q64079768	Comprehensive Analysis of Aspergillus nidulans PKA Phosphorylome Identifies a Novel Mode of CreA Regulation
Q35845225	Comprehensive Analysis of a Yeast Lipase Family in the Yarrowia Clade
Q91786147	Comprehensive Gene Expression Analysis in NMIBC Using RNA-seq Reveals New Therapy Strategies
Q35873197	Comprehensive Identification of Long Non-coding RNAs in Purified Cell Types from the Brain Reveals Functional LncRNA in OPC Fate Determination
Q58767734	Comprehensive RNA-Sequencing Analysis in Serum and Muscle Reveals Novel Small RNA Signatures with Biomarker Potential for DMD
Q38885238	Comprehensive Transcriptome Analyses Reveal that Potato Spindle Tuber Viroid Triggers Genome-Wide Changes in Alternative Splicing, Inducible trans-Acting Activity of Phased Secondary Small Interfering RNAs, and Immune Responses
Q36123002	Comprehensive Transcriptome Profiling Reveals Long Noncoding RNA Expression and Alternative Splicing Regulation during Fruit Development and Ripening in Kiwifruit (Actinidia chinensis).
Q107203534	Comprehensive Transcriptomic Analysis of COVID-19 Blood, Lung, and Airway
Q38901483	Comprehensive analysis of The Cancer Genome Atlas reveals a unique gene and non-coding RNA signature of fibrolamellar carcinoma.
Q99630174	Comprehensive analysis of a long non-coding RNA-associated competing endogenous RNA network in glioma
Q37699208	Comprehensive analysis of aberrantly expressed profiles of lncRNAs and miRNAs with associated ceRNA network in muscle-invasive bladder cancer
Q95261341	Comprehensive analysis of competing endogenous RNA network in Wilms tumor based on the TARGET database
Q38478741	Comprehensive analysis of gene expression in human retina and supporting tissues.
Q47104232	Comprehensive analysis of gene expression patterns in Friedreich's ataxia fibroblasts by RNA sequencing reveals altered levels of protein synthesis factors and solute carriers.
Q64931559	Comprehensive analysis of key genes, microRNAs and long non-coding RNAs in hepatocellular carcinoma.
Q34654714	Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes
Q64237565	Comprehensive analysis of the longan transcriptome reveals distinct regulatory programs during the floral transition
Q57062487	Comprehensive analysis of the tumor immune micro-environment in non-small cell lung cancer for efficacy of checkpoint inhibitor
Q35194274	Comprehensive analysis of the whole transcriptomes from two different pig breeds using RNA-Seq method.
Q27323145	Comprehensive assignment of roles for Salmonella typhimurium genes in intestinal colonization of food-producing animals
Q34484795	Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress.
Q91724299	Comprehensive characterization of a floral mutant reveals the mechanism of hooked petal morphogenesis in Chrysanthemum morifolium
Q38624501	Comprehensive epigenetic analysis of the signature genes in lung adenocarcinoma
Q34369969	Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
Q36973617	Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers
Q38790079	Comprehensive genomic analysis of malignant pleural mesothelioma identifies recurrent mutations, gene fusions and splicing alterations
Q40858735	Comprehensive genomic profiling of IgM multiple myeloma identifies IRF4 as a prognostic marker.
Q35906565	Comprehensive identification of sexually dimorphic genes in diverse cattle tissues using RNA-seq
Q37725524	Comprehensive investigation of a novel differentially expressed lncRNA expression profile signature to assess the survival of patients with colorectal adenocarcinoma
Q90618698	Comprehensive investigation of the clinical significance and molecular mechanisms of plasmacytoma variant translocation 1 in sarcoma using genome-wide RNA sequencing data
Q55370610	Comprehensive metabolic and transcriptomic profiling of various tissues provide insights for saponin biosynthesis in the medicinally important Asparagus racemosus.
Q47136622	Comprehensive microRNA-sequencing of exosomes derived from head and neck carcinoma cells in vitro reveals common secretion profiles and potential utility as salivary biomarkers
Q36306858	Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench
Q58799642	Comprehensive profiling of transcriptional networks specific for lactogenic differentiation of HC11 mammary epithelial stem-like cells
Q34527899	Comprehensive structural annotation of Pichia pastoris transcriptome and the response to various carbon sources using deep paired-end RNA sequencing
Q30964224	Comprehensive transcript profiling of two grapevine rootstock genotypes contrasting in drought susceptibility links the phenylpropanoid pathway to enhanced tolerance
Q34500701	Comprehensive transcriptional landscape of aging mouse liver
Q38602995	Comprehensive transcriptome analyses reveal tomato plant responses to tobacco rattle virus-based gene silencing vectors
Q64273343	Comprehensive transcriptome analysis and functional characterization of PR-5 for its involvement in tomato Sw-7 resistance to tomato spotted wilt tospovirus
Q47105089	Comprehensive transcriptome analysis reveals distinct regulatory programs during vernalization and floral bud development of orchardgrass (Dactylis glomerata L.).
Q92516102	Comprehensive transcriptome analysis reveals genes potentially involved in isoflavone biosynthesis in Pueraria thomsonii Benth
Q57072688	Comprehensively Profiling the Chromatin Architecture of Tissue Restricted Antigen Expression in Thymic Epithelial Cells Over Development
Q34491794	Compromised RNA polymerase III complex assembly leads to local alterations of intergenic RNA polymerase II transcription in Saccharomyces cerevisiae
Q38532043	Computational Approaches for the Analysis of ncRNA through Deep Sequencing Techniques
Q38913419	Computational Discovery of Niclosamide Ethanolamine, a Repurposed Drug Candidate That Reduces Growth of Hepatocellular Carcinoma Cells In Vitro and in Mice by Inhibiting Cell Division Cycle 37 Signaling
Q57881342	Computational Methods for Quality Check, Preprocessing and Normalization of RNA-Seq Data for Systems Biology and Analysis
Q28686251	Computational analysis of bacterial RNA-Seq data
Q30884891	Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
Q27014185	Computational analysis of noncoding RNAs
Q38335021	Computational and analytical challenges in single-cell transcriptomics
Q35417365	Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput
Q28080523	Computational characterisation of cancer molecular profiles derived using next generation sequencing
Q30885763	Computational identification of epigenetically regulated lncRNAs and their associated genes based on integrating genomic data
Q38367824	Computational methodology for ChIP-seq analysis
Q38979583	Computational methods for direct cell conversion
Q34660508	Computational methods for transcriptome annotation and quantification using RNA-seq
Q30617899	Computational solutions for omics data
Q89517400	Concentration-dependent recruitment of mammalian odorant receptors
Q89522110	Concurrent binding to DNA and RNA facilitates the pluripotency reprogramming activity of Sox2
Q36942407	Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation.
Q34670135	Condensin-driven remodelling of X chromosome topology during dosage compensation.
Q43882118	Conditional Depletion of the Chlamydomonas Chloroplast ClpP Protease Activates Nuclear Genes Involved in Autophagy and Plastid Protein Quality Control
Q91655017	Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing
Q31138668	Conditional estimation of local pooled dispersion parameter in small-sample RNA-Seq data improves differential expression test
Q35160782	Conditional-ready mouse embryonic stem cell derived macrophages enable the study of essential genes in macrophage function
Q35923041	Confident difference criterion: a new Bayesian differentially expressed gene selection algorithm with applications
Q90637770	Connective tissue growth factor (CTGF) regulates the fusion of osteoclast precursors by inhibiting Bcl6 in periodontitis
Q28534334	Connectivity Mapping for Candidate Therapeutics Identification Using Next Generation Sequencing RNA-Seq Data
Q37340595	Conservation and divergence of bHLH genes in the calcisponge Sycon ciliatum
Q42587722	Conservation and innovation in the DUX4-family gene network
Q38456575	Conservation and modification of genetic and physiological toolkits underpinning diapause in bumble bee queens
Q58702170	Conserved Genes Underlie Phenotypic Plasticity in an Incipiently Social Bee
Q36007231	Conserved Senescence Associated Genes and Pathways in Primary Human Fibroblasts Detected by RNA-Seq
Q38429205	Conserved Transcription Factors Steer Growth-Related Genomic Programs in Daphnia
Q35982802	Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi
Q52390166	Conserved and species-specific transcription factor co-binding patterns drive divergent gene regulation in human and mouse.
Q34463543	Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease
Q28729007	Conserved expression signatures between medaka and human pigment cell tumors
Q39932397	Conserved gene regulatory function of the carboxy-terminal domain of dictyostelid C-module-binding factor
Q37133206	Conserved genes and pathways in primary human fibroblast strains undergoing replicative and radiation induced senescence
Q34366734	Conserved temporal patterns of microRNA expression in Drosophila support a developmental hourglass model
Q27320558	Conserved translatome remodeling in nematode species executing a shared developmental transition
Q61800794	Consistent Reanalysis of Genome-wide Imprinting Studies in Plants Using Generalized Linear Models Increases Concordance across Datasets
Q58562807	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid
Q49187371	Construction and Comprehensive Analysis for Dysregulated Long Non-Coding RNA (lncRNA)-Associated Competing Endogenous RNA (ceRNA) Network in Gastric Cancer.
Q38646016	Construction and Optimization of a Large Gene Coexpression Network in Maize Using RNA-Seq Data.
Q50114394	Construction and analysis for differentially expressed long non-coding RNAs and MicroRNAs mediated competing endogenous RNA network in colon cancer.
Q46252002	Construction of a hierarchical gene regulatory network centered around a transcription factor.
Q97420692	Continent-Scale Sampling Reveals Fine-Scale Turnover in a Beneficial Bug Symbiont
Q91687834	Continuous Culture Adaptation of Methylobacterium extorquens AM1 and TK 0001 to Very High Methanol Concentrations
Q42363565	Contrasting Levels of Molecular Evolution on the Mouse X Chromosome.
Q28542051	Contrasting metabolism in perenniating structures of upland and lowland switchgrass plants late in the growing season
Q30614122	Contribution of Veillonella parvula to Pseudomonas aeruginosa-mediated pathogenicity in a murine tumor model system
Q51526578	Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures.
Q58105561	Contribution of the cold shock protein CspA to virulence in Xanthomonas oryzae pv. oryzae
Q57030838	Contributions of TaSUTs to grain weight in wheat under drought
Q37473800	Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape
Q28547287	Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation
Q34470994	Controlled induction of DNA double-strand breaks in the mouse liver induces features of tissue ageing
Q57133412	Convergent evolution of coloration in experimental introductions of the guppy ()
Q104111273	Convergent genomic and pharmacological evidence of PI3K/GSK3 signaling alterations in neurons from schizophrenia patients
Q42100429	Conversion of MyoD to a neurogenic factor: binding site specificity determines lineage
Q33746443	Cooperation between a hierarchical set of recruitment sites targets the X chromosome for dosage compensation
Q39006802	Cooperative Binding of Transcription Factors Orchestrates Reprogramming
Q36199571	Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans
Q34551862	Coordinate regulation of DNA methylation and H3K27me3 in mouse embryonic stem cells
Q47613065	Coordinated Splicing of Regulatory Detained Introns within Oncogenic Transcripts Creates an Exploitable Vulnerability in Malignant Glioma.
Q99710945	Coordinated analysis of exon and intron data reveals novel differential gene expression changes
Q49570654	Coordinated gene expression between Trichodesmium and its microbiome over day-night cycles in the North Pacific Subtropical Gyre.
Q36598417	Coordinated regulation of synthesis and stability of RNA during the acute TNF-induced proinflammatory response
Q35793524	Coordinated tissue-specific regulation of adjacent alternative 3' splice sites in C. elegans
Q47443791	Copper and cerium-regulated gene expression in Methylosinus trichosporium OB3b
Q46653372	Copper homeostasis at the host vibrio interface: lessons from intracellular vibrio transcriptomics
Q42774111	Copper response regulator1-dependent and -independent responses of the Chlamydomonas reinhardtii transcriptome to dark anoxia
Q31159938	Copy number variation is a fundamental aspect of the placental genome.
Q34373648	Copy-number-aware differential analysis of quantitative DNA sequencing data
Q52937723	Core Pluripotency Factors Directly Regulate Metabolism in Embryonic Stem Cell to Maintain Pluripotency.
Q34805054	Coregulation of Terpenoid Pathway Genes and Prediction of Isoprene Production in Bacillus subtilis Using Transcriptomics
Q27311289	Coronary Artery Disease Associated Transcription Factor TCF21 Regulates Smooth Muscle Precursor Cells That Contribute to the Fibrous Cap
Q30279158	Coronary Artery Disease Associated Transcription Factor TCF21 Regulates Smooth Muscle Precursor Cells that Contribute to the Fibrous Cap
Q57281644	Coronary artery disease genes SMAD3 and TCF21 promote opposing interactive genetic programs that regulate smooth muscle cell differentiation and disease risk
Q28820931	Correlation analysis of the mRNA and miRNA expression profiles in the nascent synthetic allotetraploid Raphanobrassica
Q36050225	Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population
Q31048490	Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.
Q33579714	Correlation of EGFR or KRAS mutation status with 18F-FDG uptake on PET-CT scan in lung adenocarcinoma
Q27330115	Correlative Gene Expression to Protective Seroconversion in Rift Valley Fever Vaccinates
Q34193531	Corset: enabling differential gene expression analysis for de novo assembled transcriptomes
Q61448844	Cortisol Acting Through the Glucocorticoid Receptor Is Not Involved in Exercise-Enhanced Growth, But Does Affect the White Skeletal Muscle Transcriptome in Zebrafish ()
Q92085006	Cost effective, experimentally robust differential-expression analysis for human/mammalian, pathogen and dual-species transcriptomics
Q38933985	Count ratio model reveals bias affecting NGS fold changes
Q29577114	Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
Q34078995	Counting absolute numbers of molecules using unique molecular identifiers
Q47745075	Coupling Seq-BSA and RNA-Seq Analyses Reveal the Molecular Pathway and Genes Associated with Heading Type in Chinese Cabbage
Q36028581	CovRS-Regulated Transcriptome Analysis of a Hypervirulent M23 Strain of Group A Streptococcus pyogenes Provides New Insights into Virulence Determinants
Q55514149	Covariate-dependent negative binomial factor analysis of RNA sequencing data.
Q37504579	CpG Oligodeoxynucleotides Induce Differential Cytokine and Chemokine Gene Expression Profiles in Dapulian and Landrace Pigs.
Q37688093	Crizotinib inhibits NF2-associated schwannoma through inhibition of focal adhesion kinase 1.
Q31010344	Cross platform analysis of methylation, miRNA and stem cell gene expression data in germ cell tumors highlights characteristic differences by tumor histology.
Q41156004	Cross talk between the response regulators PhoB and TctD allows for the integration of diverse environmental signals in Pseudomonas aeruginosa.
Q39162398	Cross-regulation by CrcZ RNA controls anoxic biofilm formation in Pseudomonas aeruginosa
Q36642197	Cross-talk between PRMT1-mediated methylation and ubiquitylation on RBM15 controls RNA splicing.
Q52663648	Cross-talk between chromatin acetylation and SUMOylation of tripartite motif-containing protein 24 (TRIM24) impacts cell adhesion.
Q35885919	CrossNorm: a novel normalization strategy for microarray data in cancers
Q57292627	Crosstalk between BPA and FXRα Signaling Pathways Lead to Alterations of Undifferentiated Germ Cell Homeostasis and Male Fertility Disorders
Q28820998	Crosstalk between sugarcane and a plant-growth promoting Burkholderia species
Q92354838	Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs
Q57469416	Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops
Q92539377	Cultivar-Dependent Variation of the Cotton Rhizosphere and Endosphere Microbiome Under Field Conditions
Q26740066	Current analysis of host-parasite interactions with a focus on next generation sequencing data
Q34273183	Cyber-T web server: differential analysis of high-throughput data
Q27976472	Cyclic GMP balance is critical for malaria parasite transmission from the mosquito to the mammalian host
Q64965798	Cyclin C Regulated Oxidative Stress Responsive Transcriptome in Mus musculus Embryonic Fibroblasts.
Q52596652	Cysteine and Glycine-Rich Protein 3 Regulates Glucose Homeostasis in Skeletal Muscle.
Q35786418	CytR Is a Global Positive Regulator of Competence, Type VI Secretion, and Chitinases in Vibrio cholerae.
Q39299656	Cytokine-induced megakaryocytic differentiation is regulated by genome-wide loss of a uSTAT transcriptional program.
Q89425315	Cytological and transcriptome analyses reveal abrupt gene expression for meiosis and saccharide metabolisms that associated with pollen abortion in autotetraploid rice
Q38717506	Cytoplasmic Irradiation Induces Metabolic Shift in Human Small Airway Epithelial Cells via Activation of Pim-1 Kinase
Q104111094	Cytosolic sequestration of the vitamin D receptor as a therapeutic option for vitamin D-induced hypercalcemia
Q30789769	DAFS: a data-adaptive flag method for RNA-sequencing data to differentiate genes with low and high expression
Q47141399	DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Q38271640	DEB: A web interface for RNA-seq digital gene expression analysis
Q60920342	DEBrowser: interactive differential expression analysis and visualization tool for count data
Q58698340	DECtp: Calling Differential Gene Expression Between Cancer and Normal Samples by Integrating Tumor Purity Information
Q111519186	DEGnext: classification of differentially expressed genes from RNA-seq data using a convolutional neural network with transfer learning
Q34372165	DEXUS: identifying differential expression in RNA-Seq studies with unknown conditions
Q47143638	DEclust: A statistical approach for obtaining differential expression profiles of multiple conditions.
Q90604309	DEqMS: a method for accurate variance estimation in differential protein expression analysis
Q34530091	DFI: gene feature discovery in RNA-seq experiments from multiple sources
Q36193416	DGCA: A comprehensive R package for Differential Gene Correlation Analysis
Q30927177	DGEclust: differential expression analysis of clustered count data
Q31098863	DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data
Q42290943	DMAK: A curated pan-cancer DNA methylation annotation knowledgebase
Q41619619	DNA Adenine Methyltransferase (Dam) Overexpression Impairs Photorhabdus luminescens Motility and Virulence
Q35690310	DNA Demethylation Dynamics in the Human Prenatal Germline
Q38446580	DNA Methylation Signature Reveals Cell Ontogeny of Renal Cell Carcinomas.
Q46238832	DNA and RNA-sequence based GWAS highlights membrane-transport genes as key modulators of milk lactose content
Q37724852	DNA methylation alters transcriptional rates of differentially expressed genes and contributes to pathophysiology in mice fed a high fat diet
Q45963939	DNA methylation analysis of CD4+ T cells in patients with psoriasis.
Q34944591	DNA methylation analysis of murine hematopoietic side population cells during aging
Q34450331	DNA methylation and transcription in a distal region upstream from the bovine AlphaS1 casein gene after once or twice daily milking
Q91511371	DNA methylation dynamics underlie metamorphic gene regulation programs in Xenopus tadpole brain
Q35549029	DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation.
Q35423772	DNA methylation in the medial prefrontal cortex regulates alcohol-induced behavior and plasticity.
Q30391060	DNA methylation profiling of primary neuroblastoma tumors using methyl-CpG-binding domain sequencing
Q27323102	DNA methylation restrains transposons from adopting a chromatin signature permissive for meiotic recombination
Q33727517	DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control
Q48293367	DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats.
Q60048475	DREAMSeq: An Improved Method for Analyzing Differentially Expressed Genes in RNA-seq Data
Q34549718	DRIMSeq: a Dirichlet-multinomial framework for multivariate count outcomes in genomics.
Q92446650	DRL1, Encoding A NAC Transcription Factor, Is Involved in Leaf Senescence in Grapevine
Q35053069	DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis
Q55038640	Dal81 Regulates Expression of Arginine Metabolism Genes in Candida parapsilosis.
Q93067502	Dark period transcriptomic and metabolic profiling of two diverse Eutrema salsugineum accessions
Q38616209	Data aggregation at the level of molecular pathways improves stability of experimental transcriptomic and proteomic data.
Q31008411	Data in brief: Transcriptome analysis of induced pluripotent stem cells from monozygotic twins discordant for trisomy 21.
Q31139624	Data on global expression of non-coding RNome in mice gastrocnemius muscle exposed to jararhagin, snake venom metalloproteinase
Q31140876	Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectoderm
Q30652856	Data-based filtering for replicated high-throughput transcriptome sequencing experiments
Q35575424	Dawn- and dusk-phased circadian transcription rhythms coordinate anabolic and catabolic functions in Neurospora
Q41660681	De Novo Assembly and Analysis of Polygonatum sibiricum Transcriptome and Identification of Genes Involved in Polysaccharide Biosynthesis
Q35601253	De Novo Assembly and Characterization of Stress Transcriptome in a Salinity-Tolerant Variety CS52 of Brassica juncea
Q36067372	De Novo Assembly and Comparative Transcriptome Analysis Provide Insight into Lysine Biosynthesis in Toona sinensis Roem
Q90516112	De Novo Frameshift Variants in the Neuronal Splicing Factor NOVA2 Result in a Common C-Terminal Extension and Cause a Severe Form of Neurodevelopmental Disorder
Q36216007	De Novo Sequencing and Comparative Analysis of Schima superba Seedlings to Explore the Response to Drought Stress
Q35684303	De Novo Transcriptome Assembly and Identification of Gene Candidates for Rapid Evolution of Soil Al Tolerance in Anthoxanthum odoratum at the Long-Term Park Grass Experiment
Q53899388	De Novo Transcriptome Sequencing of Olea europaea L. to Identify Genes Involved in the Development of the Pollen Tube.
Q34611440	De Novo transcriptome assembly (NGS) of Curcuma longa L. rhizome reveals novel transcripts related to anticancer and antimalarial terpenoids
Q36976933	De novo Assembly and Characterization of the Fruit Transcriptome of Idesia polycarpa Reveals Candidate Genes for Lipid Biosynthesis
Q35677299	De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes
Q37629882	De novo Transcriptome Assembly of Chinese Kale and Global Expression Analysis of Genes Involved in Glucosinolate Metabolism in Multiple Tissues
Q30000078	De novo Transcriptome Assembly of Common Wild Rice (Oryza rufipogon Griff.) and Discovery of Drought-Response Genes in Root Tissue Based on Transcriptomic Data
Q37026917	De novo Transcriptome Sequencing to Dissect Candidate Genes Associated with Pearl Millet-Downy Mildew (Sclerospora graminicola Sacc.) Interaction
Q28651495	De novo assembly and characterization of narrow-ridged finless porpoise renal transcriptome and identification of candidate genes involved in osmoregulation
Q38454985	De novo assembly and comparative analysis of root transcriptomes from different varieties of Panax ginseng C. A. Meyer grown in different environments
Q36375544	De novo assembly and comparative transcriptome analysis of the foot from Chinese green mussel (Perna viridis) in response to cadmium stimulation.
Q35817810	De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum
Q30884266	De novo assembly of bacterial transcriptomes from RNA-seq data
Q30878628	De novo assembly of the desert tree Haloxylon ammodendron (C. A. Mey.) based on RNA-Seq data provides insight into drought response, gene discovery and marker identification
Q34760522	De novo characterization of Japanese scallop Mizuhopecten yessoensis transcriptome and analysis of its gene expression following cadmium exposure
Q28544913	De novo characterization of fall dormant and nondormant alfalfa (Medicago sativa L.) leaf transcriptome and identification of candidate genes related to fall dormancy
Q46265978	De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein
Q30825740	De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly
Q47301558	De novo expression of human polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) in colon adenocarcinoma inhibits the differentiation of colonic epithelium.
Q37010390	De novo mutations in the genome organizer CTCF cause intellectual disability.
Q34017934	De novo sequencing and comparative analysis of holy and sweet basil transcriptomes
Q36292121	De novo sequencing and comparative transcriptome analysis of the male and hermaphroditic flowers provide insights into the regulation of flower formation in andromonoecious taihangia rupestris
Q55175840	De novo sequencing, assembly and characterisation of Aloe vera transcriptome and analysis of expression profiles of genes related to saponin and anthraquinone metabolism.
Q29615950	De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Q35897103	De novo transcriptome analyses of host-fungal interactions in oil palm (Elaeis guineensis Jacq.).
Q47261382	De novo transcriptome analyses reveals putative pathway genes involved in biosynthesis and regulation of camptothecin in Nothapodytes nimmoniana (Graham) Mabb.
Q35755170	De novo transcriptome assembly and analysis to identify potential gene targets for RNAi-mediated control of the tomato leafminer (Tuta absoluta)
Q36645408	De novo transcriptome assembly and comprehensive expression profiling in Crocus sativus to gain insights into apocarotenoid biosynthesis.
Q35545485	De novo transcriptome assembly databases for the central nervous system of the medicinal leech
Q30853936	De novo transcriptome assembly for rudimentary leaves in Litchi chinesis Sonn. and identification of differentially expressed genes in response to reactive oxygen species
Q30393650	De novo transcriptome assembly for the lobster Homarus americanus and characterization of differential gene expression across nervous system tissues.
Q60303713	De novo transcriptome assembly of the Chinese pearl barley, adlay, by full-length isoform and short-read RNA sequencing
Q35954273	De novo transcriptome assembly of the grapevine phylloxera allows identification of genes differentially expressed between leaf- and root-feeding forms.
Q34554469	De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity
Q41718419	De novo transcriptome of the cosmopolitan dinoflagellate Amphidinium carterae to identify enzymes with biotechnological potential
Q33821773	De novo transcriptome of the mayfly Cloeon viridulum and transcriptional signatures of Prometabola
Q94541265	De novo transcriptome sequence of Senna tora provides insights into anthraquinone biosynthesis
Q34085062	De novo transcriptome sequencing and digital gene expression analysis predict biosynthetic pathway of rhynchophylline and isorhynchophylline from Uncaria rhynchophylla, a non-model plant with potent anti-alzheimer's properties
Q57161160	De novo transcriptome sequencing and metabolite profiling analyses reveal the complex metabolic genes involved in the terpenoid biosynthesis in Blue Anise Sage (Salvia guaranitica L.)
Q35811220	De novo transcriptome sequencing of Acer palmatum and comprehensive analysis of differentially expressed genes under salt stress in two contrasting genotypes
Q47124385	De novo-based transcriptome profiling of male-sterile and fertile watermelon lines
Q34622184	De-novo assembly and characterization of the transcriptome of Metschnikowia fructicola reveals differences in gene expression following interaction with Penicillium digitatum and grapefruit peel
Q41942305	De-regulation of gene expression and alternative splicing affects distinct cellular pathways in the aging hippocampus.
Q90505786	Deciphering Brain Complexity Using Single-cell Sequencing
Q49787408	Deciphering microRNA targets in pancreatic cancer using miRComb R package.
Q43186056	Deciphering the Mechanisms of Developmental Disorders (DMDD): a new programme for phenotyping embryonic lethal mice
Q36029311	Deciphering the Molecular Variations of Pine Wood Nematode Bursaphelenchus xylophilus with Different Virulence
Q36191422	Deciphering the RNA landscape by RNAome sequencing
Q33576037	Deciphering the Regulatory Network between the SREBP Pathway and Protein Secretion in Neurospora crassa.
Q52589101	Deciphering the mechanism of action of 089, a compound impairing the fungal cell cycle.
Q37718997	Deciphering the molecular profile of plaques, memory decline and neuron loss in two mouse models for Alzheimer's disease by deep sequencing
Q35610427	Deciphering the venomic transcriptome of killer-wasp Vespa velutina
Q36410184	Deconstruction of O-glycosylation--GalNAc-T isoforms direct distinct subsets of the O-glycoproteome.
Q90166586	Deconvolution of transcriptomes and miRNomes by independent component analysis provides insights into biological processes and clinical outcomes of melanoma patients
Q35042943	Decoupling of evolutionary changes in transcription factor binding and gene expression in mammals
Q60910525	Decrease of gene expression diversity during domestication of animals and plants
Q35724883	Decrease of mRNA Editing after Spinal Cord Injury is Caused by Down-regulation of ADAR2 that is Triggered by Inflammatory Response
Q51733288	Decreased A-to-I RNA editing as a source of keratinocytes dsRNA in psoriasis.
Q35172335	Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean
Q46658237	Decreased sorbitol synthesis leads to abnormal stamen development and reduced pollen tube growth via an MYB transcription factor, MdMYB39L, in apple (Malus domestica).
Q38871939	Deep Cap Analysis of Gene Expression (CAGE): Genome-Wide Identification of Promoters, Quantification of Their Activity, and Transcriptional Network Inference
Q38460655	Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals
Q55313045	Deep Transcriptomic Analysis of Black Rockfish (Sebastes schlegelii) Provides New Insights on Responses to Acute Temperature Stress.
Q35182201	Deep evolutionary comparison of gene expression identifies parallel recruitment of trans-factors in two independent origins of C4 photosynthesis
Q42291696	Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome
Q37660204	Deep sequencing and high-resolution imaging reveal compartment-specific localization of Bdnf mRNA in hippocampal neurons
Q28742928	Deep sequencing of MYC DNA-binding sites in Burkitt lymphoma
Q35593966	Deep sequencing of cardiac microRNA-mRNA interactomes in clinical and experimental cardiomyopathy
Q41838530	Deep sequencing of mitochondrial genomes reveals increased mutation load in Friedreich's ataxia.
Q42773625	Deep sequencing of the porcine endometrial transcriptome on day 14 of pregnancy
Q37459909	Deep sequencing of transcriptome profiling of GSTM2 knock-down in swine testis cells
Q35780762	Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation
Q33921302	Deep sequencing reveals novel microRNAs and regulation of microRNA expression during cell senescence
Q35874298	Deep sequencing transcriptional fingerprinting of rice kernels for dissecting grain quality traits.
Q42115225	Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens
Q21134930	Deep sequencing whole transcriptome exploration of the σE regulon in Neisseria meningitidis
Q30362325	Deep transcriptional sequencing of mucosal challenge compartment from rhesus macaques acutely infected with simian immunodeficiency virus implicates loss of cell adhesion preceding immune activation
Q41059926	Deep transcriptome profiling of clinical Klebsiella pneumoniae isolates reveals strain and sequence type-specific adaptation.
Q37586259	Deep transcriptome sequencing of wild halophyte rice, Porteresia coarctata, provides novel insights into the salinity and submergence tolerance factors
Q54379667	Deep transcriptome sequencing reveals differences in global gene expression between normal and pale, soft, and exudative turkey meat.
Q28731714	Deep-sequencing protocols influence the results obtained in small-RNA sequencing
Q89863675	DeepTRIAGE: interpretable and individualised biomarker scores using attention mechanism for the classification of breast cancer sub-types
Q28386748	Defects of Lipid Synthesis Are Linked to the Age-Dependent Demyelination Caused by Lamin B1 Overexpression
Q89495248	Defensive Responses of Tea Plants (Camellia sinensis) Against Tea Green Leafhopper Attack: A Multi-Omics Study
Q92916364	Deficiency of nucleotide excision repair is associated with mutational signature observed in cancer
Q99248364	Deficiency of the SMOC2 matricellular protein impairs bone healing and produces age-dependent bone loss
Q27300826	Deficiency of the zinc finger protein ZFP106 causes motor and sensory neurodegeneration
Q44657393	Defined Sensing Mechanisms and Signaling Pathways Contribute to the Global Inflammatory Gene Expression Output Elicited by Ionizing Radiation.
Q35190948	Defining CD4 T cell memory by the epigenetic landscape of CpG DNA methylation
Q92819794	Defining housekeeping genes suitable for RNA-seq analysis of the human allograft kidney biopsy tissue
Q33878855	Defining the 5΄ and 3΄ landscape of the Drosophila transcriptome with Exo-seq and RNaseH-seq.
Q35664307	Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex
Q92681827	Defining the Identity and Dynamics of Adult Gastric Isthmus Stem Cells
Q37271792	Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling
Q35813543	Defining the nitrogen regulated transcriptome of Mycobacterium smegmatis using continuous culture
Q42777328	Defining the three cell lineages of the human blastocyst by single-cell RNA-seq.
Q35088957	Defining the transcriptomic landscape of Candida glabrata by RNA-Seq.
Q33556276	Defining the transcriptomic landscape of the developing enteric nervous system and its cellular environment
Q64109111	DegNorm: normalization of generalized transcript degradation improves accuracy in RNA-seq analysis
Q38873914	DegPack: a web package using a non-parametric and information theoretic algorithm to identify differentially expressed genes in multiclass RNA-seq samples
Q35674644	Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation
Q90392310	Delegating Sex: Differential Gene Expression in Stolonizing Syllids Uncovers the Hormonal Control of Reproduction
Q90437105	Deletion of Fatty Acid Transport Protein 2 (FATP2) in the mouse liver changes the metabolic landscape by increasing the expression of PPARα-regulated genes
Q91734247	Deletion of Tet proteins results in quantitative disparities during ESC differentiation partially attributable to alterations in gene expression
Q40018619	Dendritic Cells Regulate GPR34 through Mitogenic Signals and Undergo Apoptosis in Its Absence.
Q36267622	Dengue virus serotype 2 infection alters midgut and carcass gene expression in the Asian tiger mosquito, Aedes albopictus.
Q42697250	Denoising genome-wide histone ChIP-seq with convolutional neural networks
Q91958571	Density distribution of gene expression profiles and evaluation of using maximal information coefficient to identify differentially expressed genes
Q37285546	Dependence of tumor cell lines and patient-derived tumors on the NAD salvage pathway renders them sensitive to NAMPT inhibition with GNE-618
Q40602521	Dependence-induced increase of alcohol self-administration and compulsive drinking mediated by the histone methyltransferase PRDM2.
Q40248517	Depletion of Olig2 in oligodendrocyte progenitor cells infected by Theiler's murine encephalomyelitis virus
Q34244974	Depletion of trypanosome CTR9 leads to gene expression defects
Q89777218	Derivation of induced pluripotent stem cells from ferret somatic cells
Q35032030	Design and analysis of Bar-seq experiments
Q35770670	Design and bioinformatics analysis of genome-wide CLIP experiments
Q26751087	Design and computational analysis of single-cell RNA-sequencing experiments
Q40616641	Design and expression of peptides with antimicrobial activity against Salmonella typhimurium
Q34178885	Design and validation issues in RNA-seq experiments
Q30691324	Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki)
Q36187885	Destabilization of pluripotency in the absence of Mad2l2.
Q34799985	Detained introns are a novel, widespread class of post-transcriptionally spliced introns
Q31031790	Detecting Differentially Expressed Genes with RNA-seq Data Using Backward Selection to Account for the Effects of Relevant Covariates
Q31136121	Detecting Sources of Transcriptional Heterogeneity in Large-Scale RNA-Seq Data Sets
Q38636121	Detecting ancient positive selection in humans using extended lineage sorting.
Q46294012	Detecting differential DNA methylation from sequencing of bisulfite converted DNA of diverse species
Q40232961	Detecting differential peaks in ChIP-seq signals with ODIN.
Q34313279	Detecting differential usage of exons from RNA-seq data
Q40273286	Detecting differentially expressed genes by smoothing effect of gene length on variance estimation
Q58711800	Detecting differentially expressed genes for syndromes by considering change in mean and dispersion simultaneously
Q89868793	Detection and characterization of microRNA expression profiling and its target genes in response to canine parvovirus in Crandell Reese Feline Kidney cells
Q33731157	Detection of 1α,25-dihydroxyvitamin D-regulated miRNAs in zebrafish by whole transcriptome sequencing
Q64097832	Detection of Co-expressed Pathway Modules Associated With Mineral Concentration and Meat Quality in Nelore Cattle
Q27852915	Detection of a recurrent DNAJB1-PRKACA chimeric transcript in fibrolamellar hepatocellular carcinoma
Q31043228	Detection of generic differential RNA processing events from RNA-seq data
Q36111472	Detection of high variability in gene expression from single-cell RNA-seq profiling
Q64108659	Detection of human papillomavirus in cases of head and neck squamous cell carcinoma by RNA-seq and VirTect
Q38669635	Determinants of RNA metabolism in the Schizosaccharomyces pombe genome
Q92181801	Determination of antiviral action of long non-coding RNA loc107051710 during infectious bursal disease virus infection due to enhancement of interferon production
Q36240697	Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish
Q47258988	Developing a 'personalome' for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes
Q42247800	Developing a Novel Two-Dimensional Culture System to Enrich Human Prostate Luminal Progenitors that Can Function as a Cell of Origin for Prostate Cancer
Q90344467	Development and Validation of a Prognostic Nomogram for Gastric Cancer Based on DNA Methylation-Driven Differentially Expressed Genes
Q37666821	Development and validation of a 36-gene sequencing assay for hereditary cancer risk assessment
Q92879104	Development of Personalized Therapeutic Strategies by Targeting Actionable Vulnerabilities in Metastatic and Chemotherapy-Resistant Breast Cancer PDXs
Q90964232	Development of Poly(A)-ClickSeq as a tool enabling simultaneous genome-wide poly(A)-site identification and differential expression analysis
Q90009597	Development of genetic quality tests for good manufacturing practice-compliant induced pluripotent stem cells and their derivatives
Q50499537	Development of the photosynthetic apparatus of Cunninghamia lanceolata in light and darkness.
Q36922081	Developmental Acquisition of Regulomes Underlies Innate Lymphoid Cell Functionality
Q46518066	Developmental Transcriptomics of the Hawaiian Anchialine Shrimp Halocaridina rubra Holthuis, 1963 (Crustacea: Atyidae).
Q35007905	Developmental control of polycomb subunit composition by GATA factors mediates a switch to non-canonical functions.
Q33860160	Developmental dynamics of Kranz cell transcriptional specificity in maize leaf reveals early onset of C4-related processes
Q35896285	Developmental enhancers are marked independently of zygotic Nodal signals in Xenopus
Q48003124	Developmental gene expression provides clues to relationships between sponge and eumetazoan body plans
Q36108554	Developmental transcriptome analysis and identification of genes involved in formation of intestinal air-breathing function of Dojo loach, Misgurnus anguillicaudatus
Q33991726	Developmental transcriptome analysis of human erythropoiesis.
Q42773998	Developmentally regulated long non-coding RNAs in Xenopus tropicalis
Q57170624	Developments in toxicogenomics: understanding and predicting compound-induced toxicity from gene expression data
Q95272917	DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models
Q92015470	Diagnostic and prognostic value of WNT family gene expression in hepatitis B virus‑related hepatocellular carcinoma
Q35732643	Diagnostic biases in translational bioinformatics
Q41642286	Dicer loss and recovery induce an oncogenic switch driven by transcriptional activation of the oncofetal Imp1-3 family
Q33902641	Dicer-microRNA-Myc circuit promotes transcription of hundreds of long noncoding RNAs.
Q28601156	Dictyocaulus viviparus genome, variome and transcriptome elucidate lungworm biology and support future intervention
Q90236705	Diel, daily, and spatial variation of coral reef seawater microbial communities
Q90119176	Diet influences the functions of the human intestinal microbiome
Q49834562	Dietary Broccoli Impacts Microbial Community Structure and Attenuates Chemically Induced Colitis in Mice in an Ah receptor dependent manner.
Q52320515	Dietary fat and fiber interact to uniquely modify global histone post-translational epigenetic programming in a rat colon cancer progression model.
Q64108488	DiffGRN: differential gene regulatory network analysis
Q34410684	DiffVar: a new method for detecting differential variability with application to methylation in cancer and aging
Q38421384	Differences in embryo quality are associated with differences in oocyte composition: a proteomic study in inbred mice.
Q30540469	Differences in microRNA detection levels are technology and sequence dependent
Q27323691	Differences in muscle transcriptome among pigs phenotypically extreme for fatty acid composition
Q33781475	Differences in responses of grass carp to different types of grass carp reovirus (GCRV) and the mechanism of hemorrhage revealed by transcriptome sequencing
Q30652537	Differences in the regulation of growth and biomineralization genes revealed through long-term common-garden acclimation and experimental genomics in the purple sea urchin
Q36201368	Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content
Q37358729	Different CHD chromatin remodelers are required for expression of distinct gene sets and specific stages during development of Dictyostelium discoideum.
Q30449912	Different chromatin interfaces of the Drosophila dosage compensation complex revealed by high-shear ChIP-seq
Q38878509	Different expression patterns of sperm motility-related genes in testis of diploid and tetraploid cyprinid fish†.
Q58586602	Differential Brain MicroRNA Expression Profiles After Acute and Chronic Infection of Mice With Oocysts
Q47400753	Differential Content of Proteins, mRNAs, and miRNAs Suggests that MDSC and Their Exosomes May Mediate Distinct Immune Suppressive Functions.
Q90484308	Differential Contribution of the Parental Genomes to a S. cerevisiae × S. uvarum Hybrid, Inferred by Phenomic, Genomic, and Transcriptomic Analyses, at Different Industrial Stress Conditions
Q30943464	Differential Expression Analysis for RNA-Seq Data
Q26774631	Differential Expression Analysis for RNA-Seq: An Overview of Statistical Methods and Computational Software
Q40574276	Differential Expression Analysis in RNA-Seq by a Naive Bayes Classifier with Local Normalization.
Q55004547	Differential Expression Profiling of Long Noncoding RNA and mRNA during Osteoblast Differentiation in Mouse.
Q38948719	Differential Gene Expression (DEX) and Alternative Splicing Events (ASE) for Temporal Dynamic Processes Using HMMs and Hierarchical Bayesian Modeling Approaches
Q28834378	Differential Gene Expression Analysis of the Epacromius coerulipes (Orthoptera: Acrididae) Transcriptome
Q30940442	Differential Gene Expression Reveals Candidate Genes for Drought Stress Response in Abies alba (Pinaceae).
Q40101402	Differential Recognition of Mycobacterium tuberculosis-Specific Epitopes as a Function of Tuberculosis Disease History
Q34020239	Differential Shannon entropy and differential coefficient of variation: alternatives and augmentations to differential expression in the search for disease-related genes
Q38879881	Differential Transcriptional Regulation in Roots of Tomato Near-Isogenic Lines in Response to Rapid-Onset Water Stress
Q33566352	Differential abundance analysis for microbial marker-gene surveys
Q64945101	Differential aging of growth plate cartilage underlies differences in bone length and thus helps determine skeletal proportions.
Q64934228	Differential aging-related changes in neurophysiology and gene expression in IB4-positive and IB4-negative nociceptive neurons.
Q38743889	Differential analysis of RNA-seq incorporating quantification uncertainty
Q29614490	Differential analysis of gene regulation at transcript resolution with RNA-seq
Q28647202	Differential and coherent processing patterns from small RNAs
Q55056214	Differential contribution of cis and trans gene transcription regulatory mechanisms in amygdala and prefrontal cortex and modulation by social stress.
Q31155436	Differential correlation for sequencing data.
Q33771364	Differential expression analysis at the individual level reveals a lncRNA prognostic signature for lung adenocarcinoma
Q33878991	Differential expression analysis for RNAseq using Poisson mixed models
Q30607343	Differential expression analysis for paired RNA-Seq data
Q30976032	Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads
Q30727551	Differential expression analysis of RNA-seq data at single-base resolution
Q31016167	Differential expression analysis of human endogenous retroviruses based on ENCODE RNA-seq data
Q36044823	Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
Q35581592	Differential expression in RNA-seq: a matter of depth
Q92132555	Differential expression of circulating exosomal microRNAs in refractory intracranial atherosclerosis associated with antiangiogenesis
Q36010133	Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis
Q34618655	Differential expression of miR-145 in children with Kawasaki disease
Q21134708	Differential expression of miRNAs in colorectal cancer: comparison of paired tumor tissue and adjacent normal mucosa using high-throughput sequencing
Q100415753	Differential expression of miRNAs in skeletal muscles of Indian sheep with diverse carcass and muscle traits
Q52721505	Differential expression of microRNAs and other small RNAs in muscle tissue of patients with ALS and healthy age-matched controls.
Q92518503	Differential gene and protein expression between rat tibial nerve and common peroneal nerve during Wallerian degeneration
Q24633890	Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Q32186337	Differential gene expression analysis by RNA-seq reveals the importance of actin cytoskeletal proteins in erythroleukemia cells
Q56397921	Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data
Q30651161	Differential gene expression analysis using coexpression and RNA-Seq data
Q92286642	Differential gene expression and gene ontologies associated with increasing water-stress in leaf and root transcriptomes of perennial ryegrass (Lolium perenne)
Q33813088	Differential gene expression between functionally specialized polyps of the colonial hydrozoan Hydractinia symbiolongicarpus (Phylum Cnidaria)
Q60303091	Differential gene expression between the vigorous and dwarf litchi cultivars based on RNA-Seq transcriptome analysis
Q42774768	Differential gene expression by Moniliophthora roreri while overcoming cacao tolerance in the field.
Q40075854	Differential gene expression in Anopheles stephensi following infection with drug-resistant Plasmodium yoelii
Q35901103	Differential gene expression in dentate granule cells in mesial temporal lobe epilepsy with and without hippocampal sclerosis
Q35680931	Differential gene expression in laboratory strains of human head and body lice when challenged with Bartonella quintana, a pathogenic bacterium.
Q36355211	Differential gene expression in narrow- and broad-headed European glass eels (Anguilla anguilla) points to a transcriptomic link of head shape dimorphism with growth rate and chemotaxis.
Q31058783	Differential gene expression in seasonal sympatry: mechanisms involved in diverging life histories.
Q101237408	Differential immune gene expression associated with contemporary range expansion in two invasive rodents in Senegal
Q28660239	Differential meta-analysis of RNA-seq data from multiple studies
Q90556071	Differential modulation of the androgen receptor for prostate cancer therapy depends on the DNA response element
Q39532756	Differential peak calling of ChIP-seq signals with replicates with THOR
Q36799087	Differential principal component analysis of ChIP-seq
Q93369170	Differential quantitative regulation of specific gene groups and pathways under drought stress in rice
Q44468403	Differential regulation of mRNAs and lncRNAs related to lipid metabolism in two pig breeds
Q41360125	Differential regulation of microRNAs in end-stage failing hearts is associated with left ventricular assist device unloading
Q92067122	Differential regulation of mycelial growth and aflatoxin biosynthesis by Aspergillus flavus under different temperatures as revealed by strand-specific RNA-Seq
Q31098883	Differential rhythmicity: detecting altered rhythmicity in biological data
Q35943347	Differential root transcriptomics in a polyploid non-model crop: the importance of respiration during osmotic stress
Q36155931	Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells
Q46299016	Differential transcriptomic analysis reveals hidden light response in Streptomyces lividans
Q59134221	Differentially Expressed Genes Associated with the Cabbage Yellow-Green-Leaf Mutant in the Mapping Interval with Recombination Suppression
Q35064200	Differentially expressed transcripts and dysregulated signaling pathways and networks in African American breast cancer
Q90042431	Differentially methylated loci in NAFLD cirrhosis are associated with key signaling pathways
Q37612773	Differentiated human stem cells resemble fetal, not adult, β cells
Q41468172	Differentiated transcriptional signatures in the maize landraces of Chiapas, Mexico.
Q58719654	Differentiation-state plasticity is a targetable resistance mechanism in basal-like breast cancer
Q98735562	Differently Expression Analysis and Function Prediction of Long Non-coding RNAs in Duck Embryo Fibroblast Cells Infected by Duck Tembusu Virus
Q37614624	Digital Gene Expression Analysis Provides Insight into the Transcript Profile of the Genes Involved in Aporphine Alkaloid Biosynthesis in Lotus (Nelumbo nucifera).
Q40387331	Digital Gene Expression Analysis of Ponkan Mandarin (Citrus reticulata Blanco) in Response to Asia Citrus Psyllid-Vectored Huanglongbing Infection
Q33621515	Digital cell quantification identifies global immune cell dynamics during influenza infection
Q34257320	Digital gene expression analysis based on integrated de novo transcriptome assembly of sweet potato [Ipomoea batatas (L.) Lam].
Q44390235	Digital gene expression analysis of early root infection resistance to Sporisorium reilianum f. sp. zeae in maize
Q37453858	Digital gene expression profiling analysis of duodenum transcriptomes in SD rats administered ferrous sulfate or ferrous glycine chelate by gavage
Q35814070	Digital gene-expression of alfalfa saponin extract on laying hens
Q33699980	Digital gene-expression profiling analysis of the cholesterol-lowering effects of alfalfa saponin extract on laying hens
Q36566768	Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival
Q60919540	Digoxin, an Overlooked Agonist of RORγ/RORγT
Q48257757	Dihydropyrimidine-Thiones and Clioquinol Synergize To Target β-Amyloid Cellular Pathologies through a Metal-Dependent Mechanism
Q47362670	Diluted seawater affects phytohormone receptors and maintains the protonema stage in Physcomitrella patens
Q64949268	Dipeptide repeat proteins activate a heat shock response found in C9ORF72-ALS/FTLD patients.
Q92863536	Diquat Determines a Deregulation of lncRNA and mRNA Expression in the Liver of Postweaned Piglets
Q88301592	Direct Control of SPEECHLESS by PIF4 in the High-Temperature Response of Stomatal Development
Q47426591	Direct Testing for Allele-Specific Expression Differences Between Conditions
Q36775793	Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements
Q37643819	Direct control of regulatory T cells by keratinocytes
Q40323181	Direct experimental manipulation of intestinal cells in Ascaris suum, with minor influences on the global transcriptome.
Q41620118	Direct links between the vernalization response and other key traits of cereal crops
Q91949743	Direct production of commodity chemicals from lignocellulose using Myceliophthora thermophila
Q39417593	Direct roles of SPEECHLESS in the specification of stomatal self-renewing cells.
Q37272461	Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome
Q55261007	Dirichlet Process Mixture Model for Correcting Technical Variation in Single-Cell Gene Expression Data.
Q64263099	DirtyGenes: testing for significant changes in gene or bacterial population compositions from a small number of samples
Q36379468	Discordant Growth of Monozygotic Twins Starts at the Blastocyst Stage: A Case Study
Q38619149	Discovering Condition-Specific Gene Co-Expression Patterns Using Gaussian Mixture Models: A Cancer Case Study.
Q37687833	Discovering functions of unannotated genes from a transcriptome survey of wild fungal isolates
Q37092601	Discovering miRNA Regulatory Networks in Holt-Oram Syndrome Using a Zebrafish Model
Q34831908	Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
Q34571053	Discovery and validation of Barrett's esophagus microRNA transcriptome by next generation sequencing
Q48142217	Discovery of a novel six-long non-coding RNA signature predicting survival of colorectal cancer patients.
Q92767649	Discovery of glycerol phosphate modification on streptococcal rhamnose polysaccharides
Q36207362	Discovery of progenitor cell signatures by time-series synexpression analysis during Drosophila embryonic cell immortalization.
Q64064825	Discovery of therapeutic agents for prostate cancer using genome-scale metabolic modeling and drug repositioning
Q30869256	Disease Biomarker Query from RNA-Seq Data
Q28534785	Disentangling detoxification: gene expression analysis of feeding mountain pine beetle illuminates molecular-level host chemical defense detoxification mechanisms
Q38939764	Disentangling neural cell diversity using single-cell transcriptomics
Q47550006	Disentangling the causes for faster-X evolution in aphids.
Q36093886	Disentangling the relationship between sex-biased gene expression and X-linkage.
Q57168316	Dispersed Cells Are Developmentally Distinct from Biofilm and Planktonic Cells
Q28244269	Dispersed cells represent a distinct stage in the transition from bacterial biofilm to planktonic lifestyles
Q30717777	Dispersion estimation and its effect on test performance in RNA-seq data analysis: a simulation-based comparison of methods
Q52651331	Disrupting the three-dimensional regulatory topology of the Pitx1 locus results in overtly normal development.
Q37374210	Disruption of aryl hydrocarbon receptor homeostatic levels during embryonic stem cell differentiation alters expression of homeobox transcription factors that control cardiomyogenesis
Q64298561	Dissecting Cellular Heterogeneity Using Single-Cell RNA Sequencing
Q41836185	Dissecting miRNA gene repression on single cell level with an advanced fluorescent reporter system.
Q35999183	Disseminated Medulloblastoma in a Child with Germline BRCA2 6174delT Mutation and without Fanconi Anemia
Q64272858	Distinct Gut Virome Profile of Pregnant Women With Type 1 Diabetes in the ENDIA Study
Q38439209	Distinct Molecular Signature of Murine Fetal Liver and Adult Hematopoietic Stem Cells Identify Novel Regulators of Hematopoietic Stem Cell Function
Q92033308	Distinct Regioselectivity of Fungal P450 Enzymes for Steroidal Hydroxylation
Q33785750	Distinct Transcriptional and Alternative Splicing Signatures of Decidual CD4+ T Cells in Early Human Pregnancy
Q30818159	Distinct biological events generated by ECM proteolysis by two homologous collagenases
Q37620107	Distinct cellular origins for serotonin-expressing and enterochromaffin-like cells in the gastric corpus
Q37472324	Distinct epigenomes in CD4+ T cells of newborns, middle-ages and centenarians
Q37084995	Distinct gene regulatory programs define the inhibitory effects of liver X receptors and PPARG on cancer cell proliferation
Q50003575	Distinct gene signatures predict insulin resistance in young mice with high fat diet-induced obesity.
Q60046651	Distinct genes and pathways associated with transcriptome differences in early cardiac development between fast- and slow-growing broilers
Q64965839	Distinct leaf transcriptomic response of water deficient Eucalyptus grandis submitted to potassium and sodium fertilization.
Q37639000	Distinct modes of SMAD2 chromatin binding and remodeling shape the transcriptional response to NODAL/Activin signaling.
Q37683769	Distinct populations of inflammatory fibroblasts and myofibroblasts in pancreatic cancer.
Q38645800	Distinct prognostic values of alcohol dehydrogenase mRNA expression in pancreatic adenocarcinoma
Q37543786	Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells
Q46314432	Distinctive microRNA expression signatures in proton-irradiated mice
Q37629674	Distinctive molecular responses to ultraviolet radiation between keratinocytes and melanocytes
Q38983809	Diurnal and nocturnal transcriptomic variation in the Caribbean staghorn coral, Acropora cervicornis
Q41068482	Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons
Q41601243	Divergence in Morris Water Maze-Based Cognitive Performance under Chronic Stress Is Associated with the Hippocampal Whole Transcriptomic Modification in Mice
Q46512661	Divergence maintained by climatic selection despite recurrent gene flow: a case study of Castanopsis carlesii (Fagaceae).
Q37366531	Divergence of iron metabolism in wild Malaysian yeast.
Q48312402	Divergent Hox Coding and Evasion of Retinoid Signaling Specifies Motor Neurons Innervating Digit Muscles.
Q41810228	Divergent regeneration-competent cells adopt a common mechanism for callus initiation in angiosperms
Q42656736	Divergent transcriptional responses to low temperature among populations of alpine and lowland species of New Zealand stick insects (Micrarchus).
Q47791016	Diverse Non-genetic, Allele-Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain
Q47174198	Diverse Streptococcus pneumoniae Strains Drive a Mucosal-Associated Invariant T-Cell Response Through Major Histocompatibility Complex class I-Related Molecule-Dependent and Cytokine-Driven Pathways.
Q36648738	Diverse hormone response networks in 41 independent Drosophila cell lines
Q34123037	Diversity and dynamics of the Drosophila transcriptome
Q35535011	Diversity and functional convergence of small noncoding RNAs in male germ cell differentiation and fertilization
Q33743304	Diversity and transport of microorganisms in intertidal sands of the California coast
Q64359192	Diversity of Bacterial Microbiota of Coastal Halophyte Limonium sinense and Amelioration of Salinity Stress Damage by Symbiotic Plant Growth-Promoting Actinobacterium Glutamicibacter halophytocola KLBMP 5180
Q43586426	Diversity of nitrogen assimilation pathways among microbial photosynthetic eukaryotes
Q41991864	Dnmt3a regulates global gene expression in olfactory sensory neurons and enables odorant-induced transcription
Q36140594	Do count-based differential expression methods perform poorly when genes are expressed in only one condition?
Q28534306	Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection
Q27313903	Dopamine signaling leads to loss of Polycomb repression and aberrant gene activation in experimental parkinsonism
Q28388147	Dopamine signaling promotes the xenobiotic stress response and protein homeostasis
Q36655535	Dosage Compensation in the African Malaria Mosquito Anopheles gambiae
Q38624875	Down-regulation of aminopeptidase N and ABC transporter subfamily G transcripts in Cry1Ab and Cry1Ac resistant Asian corn borer, Ostrinia furnacalis (Lepidoptera: Crambidae).
Q89896272	Downregulation of A20 Expression Increases the Immune Response and Apoptosis and Reduces Virus Production in Cells Infected by the Human Respiratory Syncytial Virus
Q59793813	Downregulation of RdDM during strawberry fruit ripening
Q59791743	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification
Q34485490	Downy mildew resistance induced by Trichoderma harzianum T39 in susceptible grapevines partially mimics transcriptional changes of resistant genotypes
Q37346666	Dpy30 is critical for maintaining the identity and function of adult hematopoietic stem cells
Q40968824	Drosophila CP190- and dCTCF-mediated enhancer blocking is augmented by SUMOylation.
Q34710008	Drosophila melanogaster show a threshold effect in response to radiation
Q35892329	Drought and flooding have distinct effects on herbivore-induced responses and resistance in Solanum dulcamara.
Q55383563	Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria.
Q35618638	Dual 3'Seq using deepSuperSAGE uncovers transcriptomes of interacting Salmonella enterica Typhimurium and human host cells
Q90369755	Dual RNA-Seq Analysis of Trichophyton rubrum and HaCat Keratinocyte Co-Culture Highlights Important Genes for Fungal-Host Interaction
Q42777187	Dual RNA-Seq of Lysobacter capsici AZ78 - Phytophthora infestans interaction shows the implementation of attack strategies by the bacterium and unsuccessful oomycete defense responses
Q92659581	Dual RNA-Seq of Mtb-Infected Macrophages In Vivo Reveals Ontologically Distinct Host-Pathogen Interactions
Q104616934	Dual RNA-Sequencing of Mycobacterium tuberculosis-Infected Cells from a Murine Infection Model
Q33701075	Dual RNA-seq transcriptional analysis of wheat roots colonized by Azospirillum brasilense reveals up-regulation of nutrient acquisition and cell cycle genes.
Q47284112	Dual Targeting of Oncogenic Activation and Inflammatory Signaling Increases Therapeutic Efficacy in Myeloproliferative Neoplasms.
Q42700843	Dual effects of constitutively active androgen receptor and full-length androgen receptor for N-cadherin regulation in prostate cancer
Q92093276	Dual functionality of the amyloid protein TasA in Bacillus physiology and fitness on the phylloplane
Q38444272	Dual leucine zipper kinase regulates expression of axon guidance genes in mouse neuronal cells
Q41894002	Dual targeting of MEK and PI3K pathways attenuates established and progressive pulmonary fibrosis.
Q34253862	Dual transcriptional activator and repressor roles of TBX20 regulate adult cardiac structure and function
Q59210556	Dual-layer transposon repression in heads of Drosophila melanogaster.
Q33553819	Dual-site phosphorylation of the control of virulence regulator impacts group a streptococcal global gene expression and pathogenesis
Q59137095	Dye-decolorizing peroxidases in combining the catalytic properties of heme peroxidases and laccase play important roles in ligninolytic system
Q47548611	Dynamic Changes in Chemosensory Gene Expression during the Dendrolimus punctatus Mating Process.
Q46315066	Dynamic Control of X Chromosome Conformation and Repression by a Histone H4K20 Demethylase.
Q34129420	Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression
Q34536097	Dynamic GATA4 enhancers shape the chromatin landscape central to heart development and disease
Q92635646	Dynamic Transcriptome Analysis Reveals Uncharacterized Complex Regulatory Pathway Underlying Dose IBA-Induced Embryogenic Redifferentiation in Cotton
Q58568571	Dynamic Transcriptome, DNA Methylome, and DNA Hydroxymethylome Networks During T-Cell Lineage Commitment
Q42215098	Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage
Q39155079	Dynamic binding of RBPJ is determined by Notch signaling status.
Q33847761	Dynamic changes in murine forebrain miR-211 expression associate with cholinergic imbalances and epileptiform activity.
Q34596224	Dynamic changes in the Streptococcus pneumoniae transcriptome during transition from biofilm formation to invasive disease upon influenza A virus infection
Q33577437	Dynamic changes of serum microRNA-122-5p through therapeutic courses indicates amelioration of acute liver injury accompanied by acute cardiac decompensation
Q62661525	Dynamic changes to lipid mediators support transitions among macrophage subtypes during muscle regeneration
Q38660145	Dynamic hyper-editing underlies temperature adaptation in Drosophila.
Q37147830	Dynamic mRNA and miRNA expression analysis in response to intermuscular bone development of blunt snout bream (Megalobrama amblycephala).
Q42370994	Dynamic metabolic and transcriptomic profiling of methyl jasmonate-treated hairy roots reveals synthetic characters and regulators of lignan biosynthesis in Isatis indigotica Fort.
Q27310384	Dynamic transcriptional and epigenomic reprogramming from pediatric nasal epithelial cells to induced pluripotent stem cells
Q93035353	Dynamic transcriptome profiling exploring cold tolerance in forensically important blow fly, Aldrichina grahami (Diptera: Calliphoridae)
Q92382710	Dynamic transcriptome profiling in DNA damage-induced cellular senescence and transient cell-cycle arrest
Q55120408	Dynamic transcriptome profiling towards understanding the morphogenesis and development of diverse feather in domestic duck.
Q59803605	Dynamic transcriptomes of resistant and susceptible peach lines after infestation by green peach aphids (Myzus persicae Sülzer) reveal defence responses controlled by the Rm3 locus
Q26782685	Dynamics in Transcriptomics: Advancements in RNA-seq Time Course and Downstream Analysis
Q93270224	Dynamics of Global Gene Expression and Regulatory Elements in Growing Brachypodium Root System
Q35176166	Dynamics of HIV latency and reactivation in a primary CD4+ T cell model
Q36290875	Dynamics of Lgr6⁺ Progenitor Cells in the Hair Follicle, Sebaceous Gland, and Interfollicular Epidermis
Q58756141	Dynamics of cellular states of fibro-adipogenic progenitors during myogenesis and muscular dystrophy
Q38466186	Dynamics of gene expression patterns during early development of the European seabass (Dicentrarchus labrax).
Q35748707	Dynein Heavy Chain, Encoded by Two Genes in Agaricomycetes, Is Required for Nuclear Migration in Schizophyllum commune
Q35220835	Dysfunction of the CNS-heart axis in mouse models of Huntington's disease
Q51305213	Dysregulated circadian rhythm pathway in human osteoarthritis: NR1D1 and BMAL1 suppression alters TGF-β signaling in chondrocytes.
Q37076334	Dysregulated signaling hubs of liver lipid metabolism reveal hepatocellular carcinoma pathogenesis
Q52655772	Dysregulation of expression correlates with rare-allele burden and fitness loss in maize.
Q52628609	Dysregulation of metabolic-associated pathways in muscle of breast cancer patients: preclinical evaluation of interleukin-15 targeting fatigue.
Q37353218	Dysregulation of synaptogenesis genes antecedes motor neuron pathology in spinal muscular atrophy.
Q37076251	E2F7 regulates transcription and maturation of multiple microRNAs to restrain cell proliferation
Q47153322	EAMA: Empirically adjusted meta-analysis for large-scale simultaneous hypothesis testing in genomic experiments
Q35927135	EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments
Q39190922	EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments
Q47851270	EDC IMPACT: Molecular effects of developmental FM 550 exposure in Wistar rat placenta and fetal forebrain
Q36702597	EDGE-pro: Estimated Degree of Gene Expression in Prokaryotic Genomes.
Q38766679	ELAVL2-regulated transcriptional and splicing networks in human neurons link neurodevelopment and autism
Q36551085	EMDomics: a robust and powerful method for the identification of genes differentially expressed between heterogeneous classes.
Q30991267	EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering
Q31061755	EPIG-Seq: extracting patterns and identifying co-expressed genes from RNA-Seq data
Q54613674	ERASE-Seq: Leveraging replicate measurements to enhance ultralow frequency variant detection in NGS data.
Q89088715	ERF72 interacts with ARF6 and BZR1 to regulate hypocotyl elongation in Arabidopsis
Q42023699	ERK signalling modulates epigenome to drive epithelial to mesenchymal transition
Q41977715	ERK-Induced Activation of TCF Family of SRF Cofactors Initiates a Chromatin Modification Cascade Associated with Transcription
Q49587575	ERα Binding by Transcription Factors NFIB and YBX1 Enables FGFR2 Signaling to Modulate Estrogen Responsiveness in Breast Cancer.
Q36256649	ESRP2 controls an adult splicing programme in hepatocytes to support postnatal liver maturation.
Q40521738	EWS/FLI utilizes NKX2-2 to repress mesenchymal features of Ewing sarcoma
Q91715331	Early Response of Radish to Heat Stress by Strand-Specific Transcriptome and miRNA Analysis
Q91639109	Early Stage Adaptation of a Mesophilic Green Alga to Antarctica: Systematic Increases in Abundance of Enzymes and LEA Proteins
Q37575507	Early Transcriptional Changes Induced by Wnt/β-Catenin Signaling in Hippocampal Neurons
Q51416698	Early and late response of Nematostella vectensis transcriptome to heavy metals.
Q38487580	Early disruption of maternal-zygotic interaction and activation of defense-like responses in Arabidopsis interspecific crosses
Q42314837	Early metabolic and transcriptional variations in fruit of natural white-fruited Fragaria vesca genotypes
Q33815065	Early microRNA expression profile as a prognostic biomarker for the development of pelvic inflammatory disease in a mouse model of chlamydial genital infection
Q38953365	Early osteoblast responses to orthopedic implants: Synergy of surface roughness and chemistry of bioactive ceramic coating
Q38464115	Early transcriptional changes in Beta vulgaris in response to low temperature
Q37397565	Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes
Q90449872	Ecdysis triggering hormone receptors regulate male courtship behavior via antennal lobe interneurons in Drosophila
Q34833528	Ecto- and endoparasite induce similar chemical and brain neurogenomic responses in the honey bee (Apis mellifera).
Q37333989	Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors
Q48229427	Effect of Akt activation and experimental pharmacological inhibition on responses to neoadjuvant chemoradiotherapy in rectal cancer
Q60960532	Effect of Fungal Elicitor on the Production of Terpenoid Indole Alkaloids in Cambial Meristematic Cells
Q88254641	Effect of Red and Blue Light on Anthocyanin Accumulation and Differential Gene Expression in Strawberry (Fragaria × ananassa)
Q35781152	Effect of Whole-Grain Barley on the Human Fecal Microbiota and Metabolome
Q37123148	Effect of a diet enriched with omega-6 and omega-3 fatty acids on the pig liver transcriptome.
Q37682911	Effect of a small molecule Lipid II binder on bacterial cell wall stress.
Q47699305	Effect of cell cycle arrest on intermediate metabolism in the marine diatom Phaeodactylum tricornutum
Q64108991	Effect of fasting and subsequent refeeding on the transcriptional profiles of brain in juvenile Spinibarbus hollandi
Q92283119	Effect of growth rate on transcriptomic responses to immune stimulation in wild-type, domesticated, and GH-transgenic coho salmon
Q35887166	Effect of low-expression gene filtering on detection of differentially expressed genes in RNA-seq data
Q38379253	Effect of method of deduplication on estimation of differential gene expression using RNA-seq
Q64110425	Effect of paleopolyploidy and allopolyploidy on gene expression in banana
Q33884547	Effect of praziquantel on the differential expression of mouse hepatic genes and parasite ATP binding cassette transporter gene family members during Schistosoma mansoni infection
Q38963561	Effect of prior drought and pathogen stress on Arabidopsis transcriptome changes to caterpillar herbivory.
Q47142040	Effect of short term diet restriction on gene expression in the bovine hypothalamus using next generation RNA sequencing technology
Q34043872	Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence
Q91744768	Effect of the luxI/R gene on AHL-signaling molecules and QS regulatory mechanism in Hafnia alvei H4
Q92020402	Effective and Accurate Gene Silencing by a Recombinant AAV-Compatible MicroRNA Scaffold
Q40008069	Effector T-cell trafficking between the leptomeninges and the cerebrospinal fluid
Q41123284	Effects of DNA methylation on nucleosome stability
Q33600260	Effects of Inhibitors on the Transcriptional Profiling of Gluconobater oxydans NL71 Genes after Biooxidation of Xylose into Xylonate
Q58584814	Effects of Nitrogen Level during Seed Production on Wheat Seed Vigor and Seedling Establishment at the Transcriptome Level
Q93155884	Effects of a Sudden Drop in Salinity on Immune Response Mechanisms of Anadara kagoshimensis
Q35131776	Effects of cytosine methylation on transcription factor binding sites
Q27316978	Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome
Q57472680	Effects of dietary protein restriction followed by realimentation on growth performance and liver transcriptome alterations of lamb
Q37139666	Effects of hibernation on bone marrow transcriptome in thirteen-lined ground squirrels
Q90219392	Effects of long-term exercise on plasma adipokine levels and inflammation-related gene expression in subcutaneous adipose tissue in sedentary dysglycaemic, overweight men and sedentary normoglycaemic men of healthy weight
Q47826909	Effects of repeated long-term psychosocial stress and acute cannabinoid exposure on mouse corticostriatal circuitries: Implications for neuropsychiatric disorders.
Q64121762	Effects of sublethal doses of clothianidin and/or V. destructor on honey bee (Apis mellifera) self-grooming behavior and associated gene expression
Q30985807	Effects of subsampling on characteristics of RNA-seq data from triple-negative breast cancer patients
Q42850200	Effects of supplementary butyrate on butanol production and the metabolic switch in Clostridium beijerinckii NCIMB 8052: genome-wide transcriptional analysis with RNA-Seq
Q34416621	Efficient experimental design and analysis strategies for the detection of differential expression using RNA-Sequencing
Q42630347	Efficient protein production by yeast requires global tuning of metabolism
Q33976277	Efficiently identifying genome-wide changes with next-generation sequencing data
Q51418960	Egr-1 mediated cardiac miR-99 family expression diverges physiological hypertrophy from pathological hypertrophy.
Q64093212	Elevated / Expression During the Disease Process of Primary Sjögren's Syndrome
Q92108652	Elevated HOX gene expression in acute myeloid leukemia is associated with NPM1 mutations and poor survival
Q50195572	Elsässer et al. reply.
Q36798313	Elucidating MicroRNA Regulatory Networks Using Transcriptional, Post-transcriptional, and Histone Modification Measurements
Q38825589	Elucidating the cancer-specific genetic alteration spectrum of glioblastoma derived cell lines from whole exome and RNA sequencing
Q38552464	Elucidating the mechanisms of transcription regulation during heart development by next-generation sequencing
Q90859888	Elucidation of a sialic acid metabolism pathway in mucus-foraging Ruminococcus gnavus unravels mechanisms of bacterial adaptation to the gut
Q35185286	Elucidation of sigma factor-associated networks in Pseudomonas aeruginosa reveals a modular architecture with limited and function-specific crosstalk.
Q34283364	Embryonic stem cell potency fluctuates with endogenous retrovirus activity
Q44871921	Embryonic transcription factor SOX9 drives breast cancer endocrine resistance
Q47152402	Emergence of pathway-level composite biomarkers from converging gene set signals of heterogeneous transcriptomic responses
Q35023973	Emergence shapes the structure of the seed microbiota
Q30619874	Empirical Bayesian analysis of paired high-throughput sequencing data with a beta-binomial distribution
Q39941477	Empirical insights into the stochasticity of small RNA sequencing
Q31031593	Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data.
Q88061243	Encoding of contextual fear memory requires de novo proteins in the prelimbic cortex
Q99555098	Endogenous Glucocorticoid Signaling Regulates CD8+ T Cell Differentiation and Development of Dysfunction in the Tumor Microenvironment
Q92576285	Endogenous MicroRNA Competition as a Mechanism of shRNA-Induced Cardiotoxicity
Q34150560	Endogenous aryl hydrocarbon receptor promotes basal and inducible expression of tumor necrosis factor target genes in MCF-7 cancer cells
Q34327033	Endogenous retroviruses function as species-specific enhancer elements in the placenta
Q90658172	Endogenous siRNAs promote proteostasis and longevity in germline-less Caenorhabditis elegans
Q42374865	Endogenously generated 2-aminoacrylate inhibits motility in Salmonella enterica
Q35798754	Endometrial gene expression profile of pregnant sows with extreme phenotypes for reproductive efficiency
Q36652615	Endometrial transcriptional profiling of a bovine fertility model by Next-Generation Sequencing
Q94678393	Endoplasmic reticulum stress actively suppresses hepatic molecular identity in damaged liver
Q57174838	Engineering TATA-binding protein Spt15 to improve ethanol tolerance and production in
Q35762799	Enhanced MyoD-induced transdifferentiation to a myogenic lineage by fusion to a potent transactivation domain
Q90225842	Enhanced Senescence Process is the Major Factor Stopping Spike Differentiation of Wheat Mutant ptsd1
Q37744874	Enhanced expression of Survivin has distinct roles in adipocyte homeostasis
Q36212013	Enhanced in planta Fitness through Adaptive Mutations in EfpR, a Dual Regulator of Virulence and Metabolic Functions in the Plant Pathogen Ralstonia solanacearum
Q35248782	Enhanced stability and polyadenylation of select mRNAs support rapid thermogenesis in the brown fat of a hibernator.
Q36328517	Enhancement of Arabidopsis growth characteristics using genome interrogation with artificial transcription factors
Q50647626	Enhancer loops appear stable during development and are associated with paused polymerase.
Q34426602	Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain
Q90025454	Enrichment of ovine gonadotropes via adenovirus gene targeting enhances assessment of transcriptional changes in response to estradiol-17 beta†
Q47103159	Ensemble Modeling Approach Targeting Heterogeneous RNA-Seq data: Application to Melanoma Pseudogenes
Q64122639	Enter the Matrix: Factorization Uncovers Knowledge from Omics
Q64241092	Environmental and Evolutionary Drivers of the Modular Gene Regulatory Network Underlying Phenotypic Plasticity for Stress Resistance in the Nematode
Q33925432	Environmental enrichment alters protein expression as well as the proteomic response to cocaine in rat nucleus accumbens
Q57052748	Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus
Q34227780	Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses.
Q64245254	Epigenetic Co-Deregulation of EZH2/TET1 is a Senescence-Countering, Actionable Vulnerability in Triple-Negative Breast Cancer
Q64118620	Epigenetic DNA Modifications Are Correlated With B Chromosomes and Sex in the Cichlid
Q33903937	Epigenetic Memory Underlies Cell-Autonomous Heterogeneous Behavior of Hematopoietic Stem Cells
Q38622948	Epigenetic Silencing of the Key Antioxidant Enzyme Catalase in Karyotypically Abnormal Human Pluripotent Stem Cells
Q37648488	Epigenetic and genetic dissections of UV-induced global gene dysregulation in skin cells through multi-omics analyses
Q41641943	Epigenetic changes in T-cell and monocyte signatures and production of neurotoxic cytokines in ALS patients
Q36640718	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates
Q34082965	Epigenetic coordination of embryonic heart transcription by dynamically regulated long noncoding RNAs
Q30415888	Epigenetic coordination of signaling pathways during the epithelial-mesenchymal transition
Q55008852	Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila.
Q91624855	Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency
Q100512217	Epigenetic regulation of VENTXP1 suppresses tumor proliferation via miR-205-5p/ANKRD2/NF-kB signaling in head and neck squamous cell carcinoma
Q37244240	Epigenetic remodeling regulates transcriptional changes between ovarian cancer and benign precursors
Q35550139	Epigenetic reprogramming by tumor-derived EZH2 gain-of-function mutations promotes aggressive 3D cell morphologies and enhances melanoma tumor growth
Q35604314	Epigenetic reprogramming of melanoma cells by vitamin C treatment
Q38648085	Epigenetic resetting of human pluripotency.
Q33965374	Epigenetic response in mice mastitis: Role of histone H3 acetylation and microRNA(s) in the regulation of host inflammatory gene expression during Staphylococcus aureus infection
Q35085315	Epigenetics and sex differences in the brain: A genome-wide comparison of histone-3 lysine-4 trimethylation (H3K4me3) in male and female mice
Q38205635	Epigenetics of idiopathic pulmonary fibrosis
Q37602769	Epigenome-wide differences in pathology-free regions of multiple sclerosis-affected brains
Q34075540	Epigenomic analysis of primary human T cells reveals enhancers associated with TH2 memory cell differentiation and asthma susceptibility
Q36127414	Epigenomic and metabolic responses of hypothalamic POMC neurons to gestational nicotine exposure in adult offspring
Q28550899	Epigenomic landscapes of retinal rods and cones
Q47106431	Epigenomic reprogramming during pancreatic cancer progression links anabolic glucose metabolism to distant metastasis
Q43169689	Epigenomics of Neural Cells: REST-Induced Down- and Upregulation of Gene Expression in a Two-Clone PC12 Cell Model
Q33677341	Epimetheus - a multi-profile normalizer for epigenomic sequencing data
Q90129976	Epithelial NOTCH Signaling Rewires the Tumor Microenvironment of Colorectal Cancer to Drive Poor-Prognosis Subtypes and Metastasis
Q48125821	Epithelial membrane protein 2 (EMP2) deficiency alters placental angiogenesis, mimicking features of human placental insufficiency
Q42776260	Epithelial-Mesenchymal Micro-niches Govern Stem Cell Lineage Choices
Q28608051	Epiviz: a view inside the design of an integrated visual analysis software for genomics
Q30586640	Epiviz: interactive visual analytics for functional genomics data
Q30977532	Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data
Q30863640	Error estimates for the analysis of differential expression from RNA-seq count data
Q93015633	Escherichia coli Lrp Regulates One-Third of the Genome via Direct, Cooperative, and Indirect Routes
Q91960708	Esrrb function is required for proper primordial germ cell development in presomite stage mouse embryos
Q34044076	Essential Genes in the Core Genome of the Human Pathogen Streptococcus pyogenes
Q27311441	Essential Role for endogenous siRNAs during meiosis in mouse oocytes
Q30636019	Essential genome of Pseudomonas aeruginosa in cystic fibrosis sputum
Q42137600	Essential role of EBF1 in the generation and function of distinct mature B cell types
Q36765464	Essential role of the TFIID subunit TAF4 in murine embryogenesis and embryonic stem cell differentiation
Q34045491	Establishing the baseline level of repetitive element expression in the human cortex
Q34116360	Establishment and analysis of a reference transcriptome for Spodoptera frugiperda
Q50938903	Establishment and characterization of uterine sarcoma and carcinosarcoma patient-derived xenograft models.
Q30819837	Estimating coverage in metagenomic data sets and why it matters
Q37734402	Estimating differential expression from multiple indicators
Q34575219	Estimation and Testing of Gene Expression Heterosis
Q30586660	Estimation of data-specific constitutive exons with RNA-Seq data
Q31043278	Estimation of sparse directed acyclic graphs for multivariate counts data
Q35677923	Estrogen regulation of microcephaly genes and evolution of brain sexual dimorphism in primates
Q60046841	Estrogen-Dependent Upregulation of Expression in Nucleus Accumbens Is Associated With Genetic Predisposition of Sex-Specific QTL for Alcohol Consumption on Rat Chromosome 4
Q34712579	Estrogen-dependent dynamic profile of eNOS-DNA associations in prostate cancer
Q89494756	Ethanol Inhibits Aflatoxin B1 Biosynthesis in Aspergillus flavus by Up-Regulating Oxidative Stress-Related Genes
Q37556856	EuPathDB: the eukaryotic pathogen genomics database resource
Q39030701	Evaluating approaches to find exon chains based on long reads
Q35503617	Evaluating intra- and inter-individual variation in the human placental transcriptome
Q30544922	Evaluating statistical analysis models for RNA sequencing experiments
Q35903055	Evaluating whole transcriptome amplification for gene profiling experiments using RNA-Seq
Q50233388	Evaluation of Bioinformatics Approaches for Next-Generation Sequencing Analysis of microRNAs with a Toxicogenomics Study Design.
Q90407359	Evaluation of Eribulin Combined with Irinotecan for Treatment of Pediatric Cancer Xenografts
Q91617591	Evaluation of Saccharomyces cerevisiae Wine Yeast Competitive Fitness in Enologically Relevant Environments by Barcode Sequencing
Q41892926	Evaluation of TRAP-sequencing technology with a versatile conditional mouse model.
Q92425143	Evaluation of dynamic developmental processes and the molecular basis of the high body fat percentage of different proglottid types of Moniezia expansa
Q33936077	Evaluation of higher plant virus resistance genes in the green alga, Chlorella variabilis NC64A, during the early phase of infection with Paramecium bursaria chlorella virus-1
Q36271926	Evaluation of logistic regression models and effect of covariates for case-control study in RNA-Seq analysis
Q35574375	Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities
Q58723545	Evaluation of methodologies for microRNA biomarker detection by next generation sequencing
Q31018196	Evaluation of methods for differential expression analysis on multi-group RNA-seq count data
Q34244842	Evaluation of normalization methods in mammalian microRNA-Seq data
Q33883932	Evaluation of read count based RNAseq analysis methods
Q33355029	Evaluation of the hormonal state of columnar apple trees (Malus x domestica) based on high throughput gene expression studies
Q87883181	Evaluation of tools for highly variable gene discovery from single-cell RNA-seq data
Q33659063	Evidence for Ancestral Programming of Resilience in a Two-Hit Stress Model
Q92908791	Evidence for a non-canonical JAK/STAT signaling pathway in the synthesis of the brain's major ion channels and neurotransmitter receptors
Q37343260	Evidence for adaptive evolution of low-temperature stress response genes in a Pooideae grass ancestor
Q50020101	Evidence for convergent evolution of SINE-directed Staufen-mediated mRNA decay.
Q36915469	Evidence for multiple roles for grainyhead-like 2 in the establishment and maintenance of human mucociliary airway epithelium.[corrected].
Q58078941	Evidence of peripheral olfactory impairment in the domestic silkworms: insight from the comparative transcriptome and population genetics
Q50351110	Evidence that DNA polymerase δ contributes to initiating leading strand DNA replication in Saccharomyces cerevisiae.
Q33650022	Evolinc: A Tool for the Identification and Evolutionary Comparison of Long Intergenic Non-coding RNAs
Q36709231	Evolution and Functional Trajectory of Sir1 in Gene Silencing
Q98465838	Evolution and development of three highly specialized floral structures of bee-pollinated Phalaenopsis species
Q35200786	Evolution and genetic architecture of chromatin accessibility and function in yeast
Q36410883	Evolution of DNA-Binding Sites of a Floral Master Regulatory Transcription Factor
Q33839416	Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification
Q45247844	Evolution of a Biomass-Fermenting Bacterium To Resist Lignin Phenolics
Q47135278	Evolution of beak morphology in the Ground Tit revealed by comparative transcriptomics
Q46301369	Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome.
Q40270467	Evolution of gene regulation during transcription and translation
Q28538321	Evolution of human longevity uncoupled from caloric restriction mechanisms
Q24490083	Evolution of resistance to a last-resort antibiotic in Staphylococcus aureus via bacterial competition
Q43899182	Evolution of salt tolerance in a laboratory reared population of Chlamydomonas reinhardtii
Q46917962	Evolution under monogamy feminizes gene expression in Drosophila melanogaster
Q40977762	Evolution, gene expression profiling and 3D modeling of CSLD proteins in cotton
Q42651244	Evolutionary convergence of cell-specific gene expression in independent lineages of C4 grasses
Q48146864	Evolutionary dynamics of 3D genome architecture following polyploidization in cotton.
Q35626092	Evolutionary emergence of a novel splice variant with an opposite effect on the cell cycle
Q42774859	Evolutionary engineering reveals divergent paths when yeast is adapted to different acidic environments.
Q92706110	Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication
Q90624909	Exacerbation of C1q dysregulation, synaptic loss and memory deficits in tau pathology linked to neuronal adenosine A2A receptor
Q46744224	Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize.
Q47325522	Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals.
Q39275633	Exogenous N-acyl-homoserine lactones enhance the expression of flagella of Pseudomonas syringae and activate defence responses in plants.
Q35918593	Exogenous auxin regulates multi-metabolic network and embryo development, controlling seed secondary dormancy and germination in Nicotiana tabacum L
Q46776716	Exogenous retinoic acid induces digit reduction in opossums (Monodelphis domestica) by disrupting cell death and proliferation, and apical ectodermal ridge and zone of polarizing activity function
Q55435189	Exon Junction Complexes can have distinct functional flavours to regulate specific splicing events.
Q24294915	Exonuclease hDIS3L2 specifies an exosome-independent 3'-5' degradation pathway of human cytoplasmic mRNA
Q36302082	Expanded GAA repeats impede transcription elongation through the FXN gene and induce transcriptional silencing that is restricted to the FXN locus
Q35953848	Expanding the Role of FurA as Essential Global Regulator in Cyanobacteria.
Q33584235	Expanding the RpoS/σS-network by RNA sequencing and identification of σS-controlled small RNAs in Salmonella
Q36869313	Expansion of antisense lncRNA transcriptomes in budding yeast species since the loss of RNAi
Q36335558	Experimental design and data analysis of Ago-RIP-Seq experiments for the identification of microRNA targets
Q47168166	Experimental design and quantitative analysis of microbial community multiomics
Q34486787	Experimental validation of methods for differential gene expression analysis and sample pooling in RNA-seq
Q50566797	Exploiting a new strategy to induce immunogenic cell death to improve dendritic cell-based vaccines for lymphoma immunotherapy.
Q52601571	Exploration of miRNAs and target genes of cytoplasmic male sterility line in cotton during flower bud development.
Q58797385	Exploration of the Regulatory Mechanism of Secondary Metabolism by Comparative Transcriptomics in
Q58560765	Exploration of the diagnostic value and molecular mechanism of miR‑1 in prostate cancer: A study based on meta‑analyses and bioinformatics
Q92684061	Exploration of the hub genes and miRNAs in lung adenocarcinoma
Q39093184	Exploring Plant Co-Expression and Gene-Gene Interactions with CORNET 3.0.
Q59796050	Exploring mechanisms that affect coral cooperation: symbiont transmission mode, cell density and community composition
Q57132241	Exploring soil microbial 16S rRNA sequence data to increase carbon yield and nitrogen efficiency of a bioenergy crop
Q54226574	Exploring the mechanisms of resistance to Teladorsagia circumcincta infection in sheep through transcriptome analysis of abomasal mucosa and abomasal lymph nodes.
Q40612887	Exploring the miRNA-mRNA regulatory network in clear cell renal cell carcinomas by next-generation sequencing expression profiles.
Q37253104	Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1.
Q28078858	Exploring viral infection using single-cell sequencing
Q27320770	Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms
Q99604715	Export of Rgg Quorum Sensing Peptides is Mediated by the PptAB ABC Transporter in Streptococcus Thermophilus Strain LMD-9
Q36327531	Exposure to fluorescent light triggers down regulation of genes involved with mitotic progression in Xiphophorus skin
Q33906952	Exposure to hycanthone alters chromatin structure around specific gene functions and specific repeats in Schistosoma mansoni
Q47655624	Expression Differences of Resistance-Related Genes Induced by Cycloxaprid Using qRT-PCR in the Female Adult of Sogatella furcifera (Hemiptera: Delphacidae).
Q37629317	Expression Patterns of Atlantic Sturgeon (Acipenser oxyrinchus) During Embryonic Development.
Q91636454	Expression Profile Analysis of the Cell Cycle in Diploid and Tetraploid Carassius auratus red var
Q46404726	Expression and trafficking of placental microRNAs at the feto-maternal interface
Q35812370	Expression divergence measured by transcriptome sequencing of four yeast species
Q33754906	Expression of Root Genes in Arabidopsis Seedlings Grown by Standard and Improved Growing Methods
Q96953608	Expression of S100A Alarmins in Cord Blood Monocytes Is Highly Associated With Chorioamnionitis and Fetal Inflammation in Preterm Infants
Q55334008	Expression of Subtelomeric lncRNAs Links Telomeres Dynamics to RNA Decay in S. cerevisiae.
Q58199837	Expression of genes involved in DNA repair and telomere maintenance in the yeast Hansenula polymorpha DL1 under heat stress
Q47806449	Expression of lima bean terpene synthases in rice enhances recruitment of a beneficial enemy of a major rice pest.
Q42776292	Expression of long non-coding RNAs in autoimmunity and linkage to enhancer function and autoimmune disease risk genetic variants.
Q54232547	Expression of small nucleolar RNAs in leukemic cells.
Q47116441	Expression of tight junction proteins and transporters for xenobiotic metabolism at the blood-CSF barrier during development in the nonhuman primate (P. hamadryas).
Q55642082	Expression patterns and genetic variation of the ovine skeletal muscle transcriptome of sheep from five Spanish meat breeds.
Q36203396	Expression profiling of budding cells in colorectal cancer reveals an EMT-like phenotype and molecular subtype switching
Q33836652	Expression profiling of the wheat pathogen Zymoseptoria tritici reveals genomic patterns of transcription and host-specific regulatory programs
Q36410597	Expression properties exhibit correlated patterns with the fate of duplicated genes, their divergence, and transcriptional plasticity in Saccharomycotina.
Q33974147	ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data
Q53779715	Expressional profiling of prostate cancer risk SNPs at 11q13.5 identifies DGAT2 as a new target gene.
Q36259295	Extending the R Library PROPER to Enable Power Calculations for Isoform-Level Analysis with EBSeq
Q35035607	Extension of life span by impaired glucose metabolism in Caenorhabditis elegans is accompanied by structural rearrangements of the transcriptomic network
Q40487587	Extensive RNA editing and splicing increase immune self-representation diversity in medullary thymic epithelial cells
Q38957331	Extensive cis-regulatory variation robust to environmental perturbation in Arabidopsis
Q36446194	Extensive compensatory cis-trans regulation in the evolution of mouse gene expression
Q34490422	Extensive cross-regulation of post-transcriptional regulatory networks in Drosophila
Q37597383	Extensive differences in gene expression between symbiotic and aposymbiotic cnidarians
Q27322647	Extensive expression differences along porcine small intestine evidenced by transcriptome sequencing
Q33741883	Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes
Q36902919	Extensive polymerase pausing during Drosophila axis patterning enables high-level and pliable transcription
Q35974526	Extensive shift in placental transcriptome profile in preeclampsia and placental origin of adverse pregnancy outcomes
Q34410728	Extensive stage-regulation of translation revealed by ribosome profiling of Trypanosoma brucei
Q36589002	Extensive transcript diversity and novel upstream open reading frame regulation in yeast
Q42774596	Extensive translational regulation of gene expression in an allopolyploid (Glycine dolichocarpa).
Q35848961	Extensive variation between tissues in allele specific expression in an outbred mammal.
Q33823781	Extensive variation in chromatin states across humans
Q34270516	Extent, causes, and consequences of small RNA expression variation in human adipose tissue
Q36158581	Extracellular vesicle-mediated transfer of processed and functional RNY5 RNA
Q57158902	Extracellular vesicles from pluripotent stem cell-derived mesenchymal stem cells acquire a stromal modulatory proteomic pattern during differentiation
Q46174838	Extracellular vesicles released by hepatocytes from gastric infusion model of alcoholic liver disease contain a MicroRNA barcode that can be detected in blood
Q38604275	Extracting the Strongest Signals from Omics Data: Differentially Expressed Pathways and Beyond.
Q64114826	Extraction-free whole transcriptome gene expression analysis of FFPE sections and histology-directed subareas of tissue
Q22121976	Extraordinary expansion of a Sorangium cellulosum genome from an alkaline milieu
Q35681648	Extraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics and small silencing RNAs.
Q36359813	Extrathymically generated regulatory T cells control mucosal TH2 inflammation
Q47709584	Extreme rainfall affects assembly of the root-associated fungal community.
Q57073048	Extremophiles as a Model of a Natural Ecosystem: Transcriptional Coordination of Genes Reveals Distinct Selective Responses of Plants Under Climate Change Scenarios
Q48097604	Ezh2 does not mediate retinal ganglion cell homeostasis or their susceptibility to injury
Q37308487	FACS purification and transcriptome analysis of drosophila neural stem cells reveals a role for Klumpfuss in self-renewal
Q38604046	FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies
Q38604042	FANTOM5 CAGE profiles of human and mouse samples
Q33359909	FASCIATED EAR4 encodes a bZIP transcription factor that regulates shoot meristem size in maize
Q36158548	FASTKD2 is an RNA-binding protein required for mitochondrial RNA processing and translation
Q45838857	FBXO32 promotes microenvironment underlying epithelial-mesenchymal transition via CtBP1 during tumour metastasis and brain development
Q37033310	FGF19 functions as autocrine growth factor for hepatoblastoma
Q29048179	FIDEA: a server for the functional interpretation of differential expression analysis
Q46178236	FMRFamide-like peptides expand the behavioral repertoire of a densely connected nervous system.
Q37479778	FOXA1, GATA3 and PPARɣ Cooperate to Drive Luminal Subtype in Bladder Cancer: A Molecular Analysis of Established Human Cell Lines
Q28975742	FOXE3 contributes to Peters anomaly through transcriptional regulation of an autophagy-associated protein termed DNAJB1
Q37029790	FOXN3 Regulates Hepatic Glucose Utilization
Q42147114	FOXO1 regulates expression of a microRNA cluster on X chromosome
Q38435599	FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis.
Q36131743	Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice.
Q37171928	Fast neutron-induced structural rearrangements at a soybean NAP1 locus result in gnarled trichomes
Q88571266	Fasting Activates Fatty Acid Oxidation to Enhance Intestinal Stem Cell Function during Homeostasis and Aging
Q52328283	FateID infers cell fate bias in multipotent progenitors from single-cell RNA-seq data.
Q41075871	Fatty Acid Biosynthesis Pathways in Methylomicrobium buryatense 5G(B1).
Q90352365	Fatty Acids Enhance the Maturation of Cardiomyocytes Derived from Human Pluripotent Stem Cells
Q90100136	Favorable Alleles of GRAIN-FILLING RATE1 Increase the Grain-Filling Rate and Yield of Rice
Q39013930	Feasibility of sample size calculation for RNA-seq studies
Q98466331	Fecal Microbiota Signatures in Celiac Disease Patients With Poly-Autoimmunity
Q38798102	Feeding of Enterococcus faecium NCIMB 10415 Leads to Intestinal miRNA-423-5p-Induced Regulation of Immune-Relevant Genes
Q55952862	Fern genomes elucidate land plant evolution and cyanobacterial symbioses
Q36446653	Fetal liver hematopoietic stem cell niches associate with portal vessels
Q28390280	Fibrocytes Regulate Wilms Tumor 1-Positive Cell Accumulation in Severe Fibrotic Lung Disease
Q34086288	Finding consistent patterns: a nonparametric approach for identifying differential expression in RNA-Seq data
Q30564048	Finding differentially expressed regions of arbitrary length in quantitative genomic data based on marked point process model.
Q33836731	Fine Mapping and Transcriptome Analysis Reveal Candidate Genes Associated with Hybrid Lethality in Cabbage (Brassica Oleracea).
Q41380982	Fine Mapping, Transcriptome Analysis, and Marker Development for Y2 , the Gene That Conditions β-Carotene Accumulation in Carrot (Daucus carota L.).
Q37659847	Fine mapping of genome activation in bovine embryos by RNA sequencing
Q61800521	Fine mapping of the major QTL for seed coat color in Brassica rapa var. Yellow Sarson by use of NIL populations and transcriptome sequencing for identification of the candidate genes
Q40222202	Fine-mapping cellular QTLs with RASQUAL and ATAC-seq
Q61796063	Fine-mapping sequence mutations with a major effect on oligosaccharide content in bovine milk
Q35163551	Fine-mapping the 2q37 and 17q11.2-q22 loci for novel genes and sequence variants associated with a genetic predisposition to prostate cancer
Q50487328	Fine-tuning of chromatin composition and Polycomb recruitment by two Mi2 homologues during C. elegans early embryonic development.
Q49200617	Finite-size effects in transcript sequencing count distribution: its power-law correction necessarily precedes downstream normalization and comparative analysis.
Q52349520	First global transcriptome analysis of brown algae Macrocystis integrifolia (Phaeophyceae) under marine intertidal conditions.
Q39267014	First insights into the transcriptome and development of new genomic tools of a widespread circum-Mediterranean tree species, Pinus halepensis Mill
Q36410897	First-Step Mutations during Adaptation Restore the Expression of Hundreds of Genes
Q55031033	Flavonoid biosynthesis controls fiber color in naturally colored cotton.
Q37649506	Flexible expressed region analysis for RNA-seq with derfinder
Q35034372	FliZ is a global regulatory protein affecting the expression of flagellar and virulence genes in individual Xenorhabdus nematophila bacterial cells.
Q38707941	Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression
Q33358444	Floral Transcriptomes in Woodland Strawberry Uncover Developing Receptacle and Anther Gene Networks.
Q42774105	Fluorescence-Activated Cell Sorting and Gene Expression Profiling of GFP-Positive Cells from Transgenic Zebrafish Lines
Q64117548	Flura-seq identifies organ-specific metabolic adaptations during early metastatic colonization
Q35810180	Food Deprivation Affects the miRNome in the Lactating Goat Mammary Gland
Q36262574	Forager bees (Apis mellifera) highly express immune and detoxification genes in tissues associated with nectar processing
Q58555217	Formate cross-feeding and cooperative metabolic interactions revealed by transcriptomics in co-cultures of acetogenic and amylolytic human colonic bacteria
Q46242285	Formate hydrogenlyase and formate secretion ameliorate H2 inhibition in the hyperthermophilic archaeon Thermococcus paralvinellae
Q30963386	FourCSeq: analysis of 4C sequencing data
Q42501984	Foxn4 promotes gene expression required for the formation of multiple motile cilia.
Q47619822	Foxp1 in Forebrain Pyramidal Neurons Controls Gene Expression Required for Spatial Learning and Synaptic Plasticity.
Q47402230	Foxp1 regulation of neonatal vocalizations via cortical development.
Q36685360	Fra-1 is a key driver of colon cancer metastasis and a Fra-1 classifier predicts disease-free survival
Q34746667	Fragmentation of tRNA in Phytophthora infestans asexual life cycle stages and during host plant infection
Q91935887	Free glycans derived from O-mannosylated glycoproteins suggest the presence of an O-glycoprotein degradation pathway in yeast
Q40812076	Frequency and mitotic heritability of epimutations in Schistosoma mansoni
Q30938549	From Gigabyte to Kilobyte: A Bioinformatics Protocol for Mining Large RNA-Seq Transcriptomics Data
Q27335089	From Insect to Man: Photorhabdus Sheds Light on the Emergence of Human Pathogenicity
Q24612983	From RNA-seq reads to differential expression results
Q36313998	From big data to diagnosis and prognosis: gene expression signatures in liver hepatocellular carcinoma
Q89514321	From reads to insight: a hitchhiker's guide to ATAC-seq data analysis
Q35127498	From root to fruit: RNA-Seq analysis shows that arbuscular mycorrhizal symbiosis may affect tomato fruit metabolism
Q39050290	From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.
Q27310622	Full transcriptome analysis of early dorsoventral patterning in zebrafish
Q91964400	Full-Length Transcriptome Sequencing and Different Chemotype Expression Profile Analysis of Genes Related to Monoterpenoid Biosynthesis in Cinnamomum porrectum
Q91657381	Full-Length Transcriptome Survey and Expression Analysis of Parasitoid Wasp Chouioia cunea upon Exposure to 1-Dodecene
Q58726026	Full-Length Transcriptome Survey and Expression Analysis of to Discover Putative Genes Related to Aurantio-Obtusin Biosynthesis, Seed Formation and Development, and Stress Response
Q30988819	Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species
Q59128667	Full-length transcriptome sequences of ephemeral plant Arabidopsis pumila provides insight into gene expression dynamics during continuous salt stress
Q92172412	Full-length transcriptome sequencing reveals the low-temperature-tolerance mechanism of Medicago falcata roots
Q92236256	Fully Bayesian analysis of RNA-seq counts for the detection of gene expression heterosis
Q55515108	Fumonisin-Exposure Impairs Age-Related Ecological Succession of Bacterial Species in Weaned Pig Gut Microbiota.
Q66679220	FunDMDeep-m6A: identification and prioritization of functional differential m6A methylation genes
Q30966702	FunPat: function-based pattern analysis on RNA-seq time series data
Q34375331	FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer
Q64104820	Function of L-Pipecolic Acid as Compatible Solute in as Basis for Its Production Under Hyperosmolar Conditions
Q37633703	Function, targets, and evolution of Caenorhabditis elegans piRNAs
Q28550379	Functional Analysis and RNA Sequencing Indicate the Regulatory Role of Argonaute1 in Tomato Compound Leaf Development
Q35694778	Functional Analysis of Chicken IRF7 in Response to dsRNA Analog Poly(I:C) by Integrating Overexpression and Knockdown
Q38375209	Functional Analysis of miRNAs Using the DIANA Tools Online Suite.
Q50243572	Functional Analysis of the FZF1 Genes of Saccharomyces uvarum.
Q42067835	Functional Characterization of DNA Methylation in the Oligodendrocyte Lineage
Q90400843	Functional Characterization of a Global Virulence Regulator Hfq and Identification of Hfq-Dependent sRNAs in the Plant Pathogen Pantoea ananatis
Q35852321	Functional Cross-Talking between Differentially Expressed and Alternatively Spliced Genes in Human Liver Cancer Cells Treated with Berberine
Q35927535	Functional Genomic Analysis of Aspergillus flavus Interacting with Resistant and Susceptible Peanut.
Q89360903	Functional Genomics via CRISPR-Cas
Q90220133	Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence
Q48095298	Functional Transcriptomics in Diverse Intestinal Epithelial Cell Types Reveals Robust MicroRNA Sensitivity in Intestinal Stem Cells to Microbial Status
Q36047289	Functional analysis and transcriptomic profiling of iPSC-derived macrophages and their application in modeling Mendelian disease
Q28584594	Functional and Structural Analysis of a Highly-Expressed Yersinia pestis Small RNA following Infection of Cultured Macrophages
Q90473482	Functional annotation of mulberry (Morus spp.) transcriptome, differential expression of genes related to growth and identification of putative genic SSRs, SNPs and InDels
Q89763804	Functional characterization of acyl-CoA binding protein in Neospora caninum
Q35364372	Functional characterization of human T cell hyporesponsiveness induced by CTLA4-Ig
Q37292348	Functional characterization of somatic mutations in cancer using network-based inference of protein activity
Q24489878	Functional characterization of the RNA chaperone Hfq in the opportunistic human pathogen Stenotrophomonas maltophilia
Q37027651	Functional characterization of three trehalase genes regulating the chitin metabolism pathway in rice brown planthopper using RNA interference
Q42292926	Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus.
Q38891478	Functional confirmation of PLAG1 as the candidate causative gene underlying major pleiotropic effects on body weight and milk characteristics.
Q41576716	Functional differences between PD-1+ and PD-1- CD4+ effector T cells in healthy donors and patients with glioblastoma multiforme.
Q34505252	Functional diversity of carbohydrate-active enzymes enabling a bacterium to ferment plant biomass
Q35938846	Functional elucidation of the non-coding RNAs of Kluyveromyces marxianus in the exponential growth phase
Q30366322	Functional expression of dental plaque microbiota.
Q30421314	Functional genomic analysis and neuroanatomical localization of miR-2954, a song-responsive sex-linked microRNA in the zebra finch.
Q34130287	Functional genomic analysis of constitutive and inducible defense responses to Fusarium verticillioides infection in maize genotypes with contrasting ear rot resistance
Q46122779	Functional genomic analysis of corals from natural CO2 -seeps reveals core molecular responses involved in acclimatization to ocean acidification.
Q90317172	Functional genomic characterization of a synthetic anti-HER3 antibody reveals a role for ubiquitination by RNF41 in the anti-proliferative response
Q33641301	Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism
Q24490032	Functional high-throughput screening identifies the miR-15 microRNA family as cellular restriction factors for Salmonella infection
Q39381256	Functional identification of oleate 12-desaturase and ω-3 fatty acid desaturase genes from Perilla frutescens var. frutescens
Q42114504	Functional implications of Neandertal introgression in modern humans
Q101121111	Functional in vivo and in vitro effects of 20q11.21 genetic aberrations on hPSC differentiation
Q39688289	Functional interdependence of BRD4 and DOT1L in MLL leukemia
Q36621454	Functional modules of sigma factor regulons guarantee adaptability and evolvability
Q50027217	Functional overlap of hetP and hetZ in regulation of heterocyst differentiation in Anabaena sp. strain PCC 7120.
Q33702925	Functional regression method for whole genome eQTL epistasis analysis with sequencing data
Q33807305	Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features
Q91621514	Functional screenings reveal different requirements for host microRNAs in Salmonella and Shigella infection
Q36342918	Functional transcriptomics of a migrating cell in Caenorhabditis elegans
Q36180589	Functional variants of human papillomavirus type 16 demonstrate host genome integration and transcriptional alterations corresponding to their unique cancer epidemiology.
Q34163285	Functionally diverse dendritic mRNAs rapidly associate with ribosomes following a novel experience
Q103825998	Functionally impaired plasmacytoid dendritic cells and non-haematopoietic sources of type I interferon characterize human autoimmunity
Q34833095	Functionally reciprocal mutations of the prolactin signalling pathway define hairy and slick cattle
Q64073314	Fungal acetylome comparative analysis identifies an essential role of acetylation in human fungal pathogen virulence
Q41571408	Fungal microbiomes associated with green and non-green building materials
Q55359828	FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes.
Q36082481	Fusion genes with ALK as recurrent partner in ependymoma-like gliomas: a new brain tumor entity?
Q35146561	Fusion transcript discovery in formalin-fixed paraffin-embedded human breast cancer tissues reveals a link to tumor progression.
Q34104119	GC-content normalization for RNA-Seq data
Q49216777	GCN5 Regulates FGF Signaling and Activates Selective MYC Target Genes during Early Embryoid Body Differentiation.
Q31036882	GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences.
Q51701307	GH16 and GH81 family β-(1,3)-glucanases in Aspergillus fumigatus are essential for conidial cell wall morphogenesis.
Q47204303	GM-CSF overexpression after influenza a virus infection prevents mortality and moderates M1-like airway monocyte/macrophage polarization.
Q52599473	GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data.
Q38827901	GPR44 is a pancreatic protein restricted to the human beta cell
Q48172315	GPR56/ADGRG1 regulates development and maintenance of peripheral myelin.
Q58749875	GPS2 Deficiency Triggers Maladaptive White Adipose Tissue Expansion in Obesity via HIF1A Activation
Q90686293	GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution
Q90569193	GPseudoRank: a permutation sampler for single cell orderings
Q30936104	GRACOMICS: software for graphical comparison of multiple results with omics data
Q38432265	GRIK3: A novel oncogenic protein related to tumor TNM stage, lymph node metastasis, and poor prognosis of GC.
Q30850769	GSAASeqSP: a toolset for gene set association analysis of RNA-Seq data
Q49469958	GSHR, a Web-Based Platform Provides Gene Set-Level Analyses of Hormone Responses in Arabidopsis.
Q97093034	GSMN-ML- a genome scale metabolic network reconstruction of the obligate human pathogen Mycobacterium leprae
Q27315849	GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research
Q58615807	Gain of CTCF-Anchored Chromatin Loops Marks the Exit from Naive Pluripotency
Q47716837	Gaining insights into cancer biology through exploration of the cancer secretome using proteomic and bioinformatic tools.
Q35545374	Garlic (Allium sativum L.) fertility: transcriptome and proteome analyses provide insight into flower and pollen development
Q92906482	Gastric Normal Adjacent Mucosa Versus Healthy and Cancer Tissues: Distinctive Transcriptomic Profiles and Biological Features
Q28651260	Gateways to the FANTOM5 promoter level mammalian expression atlas
Q28534109	Gaucher disease: transcriptome analyses using microarray or mRNA sequencing in a Gba1 mutant mouse model treated with velaglucerase alfa or imiglucerase
Q92808065	GbCYP86A1-1 from Gossypium barbadense positively regulates defence against Verticillium dahliae by cell wall modification and activation of immune pathways
Q92660811	GenPipes: an open-source framework for distributed and scalable genomic analyses
Q42610438	GenRev: exploring functional relevance of genes in molecular networks
Q91926127	Gene Amplification-Driven Long Noncoding RNA SNHG17 Regulates Cell Proliferation and Migration in Human Non-Small-Cell Lung Cancer
Q57817924	Gene Co-expression Analysis Indicates Potential Pathways and Regulators of Beef Tenderness in Nellore Cattle
Q92539637	Gene Expression Changes During the Allo-/Deallopolyploidization Process of Brassica napus
Q36176248	Gene Expression Patterns during Light and Dark Infection of Prochlorococcus by Cyanophage
Q90258819	Gene Expression Patterns in Roots of Camelina sativa With Enhanced Salinity Tolerance Arising From Inoculation of Soil With Plant Growth Promoting Bacteria Producing 1-Aminocyclopropane-1-Carboxylate Deaminase or Expression the Corresponding acdS Ge
Q89993941	Gene Expression Profiles and microRNA Regulation Networks in Tiller Primordia, Stem Tips, and Young Spikes of Wheat Guomai 301
Q36381697	Gene Expression Profiling in Viable but Nonculturable (VBNC) Cells of Pseudomonas syringae pv. syringae
Q37627069	Gene Expression Profiling in the Injured Spinal Cord of Trachemys scripta elegans: An Amniote with Self-Repair Capabilities
Q36184092	Gene Expression Variations of Red-White Skin Coloration in Common Carp (Cyprinus carpio).
Q47122850	Gene Expression as a Dosimeter in Irradiated Drosophila melanogaster
Q35515541	Gene Expression by Mouse Inner Ear Hair Cells during Development
Q40044713	Gene Expression in Leishmania Is Regulated Predominantly by Gene Dosage
Q38812334	Gene Function Prediction Based on Developmental Transcriptomes of the Two Sexes in C. elegans
Q36592480	Gene Networks in the Wild: Identifying Transcriptional Modules that Mediate Coral Resistance to Experimental Heat Stress
Q38479481	Gene Ontology based housekeeping gene selection for RNA-seq normalization
Q54976496	Gene Profiling in Late Blight Resistance in Potato Genotype SD20.
Q30992177	Gene Ranking of RNA-Seq Data via Discriminant Non-Negative Matrix Factorization.
Q30384116	Gene Regulatory Evolution During Speciation in a Songbird.
Q40492891	Gene and miRNA expression changes in squamous cell carcinoma of larynx and hypopharynx
Q33730817	Gene dispersion is the key determinant of the read count bias in differential expression analysis of RNA-seq data
Q39942477	Gene expression analysis of E. coli strains provides insights into the role of gene regulation in diversification
Q26314504	Gene expression analysis of overwintering mountain pine beetle larvae suggests multiple systems involved in overwintering stress, cold hardiness, and preparation for spring development
Q56563706	Gene expression analysis of porcine whole blood cells infected with foot-and-mouth disease virus using high-throughput sequencing technology
Q35810815	Gene expression and splicing alterations analyzed by high throughput RNA sequencing of chronic lymphocytic leukemia specimens
Q35138466	Gene expression changes controlling distinct adaptations in the heart and skeletal muscle of a hibernating mammal
Q36483744	Gene expression changes governing extreme dehydration tolerance in an Antarctic insect
Q36342812	Gene expression changes in a tumor xenograft by a pyrrole-imidazole polyamide
Q52689460	Gene expression correlated with delay in shell formation in larval Pacific oysters (Crassostrea gigas) exposed to experimental ocean acidification provides insights into shell formation mechanisms.
Q101403054	Gene expression of the heat stress response in bovine peripheral white blood cells and milk somatic cells in vivo
Q36284736	Gene expression plasticity in response to salinity acclimation in threespine stickleback ecotypes from different salinity habitats
Q38471754	Gene expression plasticity resulting from parental leaf damage in Mimulus guttatus
Q56810866	Gene expression polymorphism underpins evasion of host immunity in an asexual lineage of the Irish potato famine pathogen
Q34431252	Gene expression profiles in paired gingival biopsies from periodontitis-affected and healthy tissues revealed by massively parallel sequencing
Q38602800	Gene expression profiling and functional analysis reveals that p53 pathway-related gene expression is highly activated in cancer cells treated by cold atmospheric plasma-activated medium
Q30850927	Gene expression profiling in gills of the great spider crab Hyas araneus in response to ocean acidification and warming
Q35180040	Gene expression profiling of laser microdissected airway smooth muscle tissue in asthma and atopy
Q88618159	Gene expression profiling of the SCN in young and old rhesus macaques
Q34163898	Gene expression responses of threespine stickleback to salinity: implications for salt-sensitive hypertension
Q38768922	Gene expression variability and the analysis of large-scale RNA-seq studies with the MDSeq
Q38798005	Gene integrated set profile analysis: a context-based approach for inferring biological endpoints
Q50971313	Gene length as a biological timer to establish temporal transcriptional regulation.
Q55432887	Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons.
Q54256188	Gene network analysis identifies a central post-transcriptional regulator of cellular stress survival.
Q50719412	Gene regulation and priming by topoisomerase IIα in embryonic stem cells.
Q34653968	Gene regulation by CcpA and catabolite repression explored by RNA-Seq in Streptococcus mutans
Q90010026	Gene regulatory network analysis with drug sensitivity reveals synergistic effects of combinatory chemotherapy in gastric cancer
Q35004938	Gene regulatory networks elucidating huanglongbing disease mechanisms
Q30991698	Gene set analysis approaches for RNA-seq data: performance evaluation and application guideline
Q37628043	Gene set analysis controlling for length bias in RNA-seq experiments
Q30640271	Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing
Q28834581	Gene set of chemosensory receptors in the polyembryonic endoparasitoid Macrocentrus cingulum
Q42515034	Gene-Edited Human Kidney Organoids Reveal Mechanisms of Disease in Podocyte Development
Q34161584	Gene-expression measurement: variance-modeling considerations for robust data analysis
Q55054349	Gene-gene interaction network analysis of hepatocellular carcinoma using bioinformatic software.
Q52591384	Gene-level differential analysis at transcript-level resolution.
Q30686301	GeneProf data: a resource of curated, integrated and reusable high-throughput genomics experiments
Q36960673	GeneScissors: a comprehensive approach to detecting and correcting spurious transcriptome inference owing to RNA-seq reads misalignment
Q35685595	General and MicroRNA-Mediated mRNA Degradation Occurs on Ribosome Complexes in Drosophila Cells
Q39209070	General approach for in vivo recovery of cell type-specific effector gene sets
Q60306283	General decapping activators target different subsets of inefficiently translated mRNAs
Q56536590	Generalized Hotelling's test for paired compositional data with application to human microbiome studies
Q38640119	Generation and characterization of rat liver stem cell lines and their engraftment in a rat model of liver failure
Q41051785	Generation of Single-Cell Transcript Variability by Repression.
Q91260412	Generation of a Comprehensive Transcriptome Atlas and Transcriptome Dynamics in Medicinal Cannabis
Q38824722	Generation of functional human serotonergic neurons from fibroblasts
Q51250015	Generation of new compounds through unbalanced transcription of landomycin A cluster.
Q38433230	Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra†.
Q27310668	Genes expressed in grapevine leaves reveal latent wood infection by the fungal pathogen Neofusicoccum parvum
Q28710391	Genes involved in the evolution of herbivory by a leaf-mining, Drosophilid fly
Q57016009	Genes involved in the induction of liver growth by peroxisome proliferators
Q28559519	Genes of susceptibility to early neurodegenerative changes in the rat retina and brain: analysis by means of congenic strains
Q38063580	Genes, behavior and next-generation RNA sequencing.
Q88073306	Genetic Control of Left Atrial Gene Expression Yields Insights into the Genetic Susceptibility for Atrial Fibrillation
Q28603063	Genetic Evidence of Human Adaptation to a Cooked Diet
Q26784244	Genetic Susceptibility to Rhodococcus equi
Q34170374	Genetic alterations of the cohesin complex genes in myeloid malignancies.
Q50636981	Genetic analysis of DEFECTIVE KERNEL1 loop function in three-dimensional body patterning in Physcomitrella patens.
Q59350774	Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of transcripts under balancing selection
Q27311664	Genetic analysis of the cardiac methylome at single nucleotide resolution in a model of human cardiovascular disease
Q33716774	Genetic background drives transcriptional variation in human induced pluripotent stem cells
Q59616623	Genetic basis and evolution of rapid cycling in railway populations of tetraploid Arabidopsis arenosa
Q91106693	Genetic basis for the cooperative bioactivation of plant lignans by Eggerthella lenta and other human gut bacteria
Q41503984	Genetic basis of mycotoxin susceptibility differences between budding yeast isolates.
Q40106768	Genetic basis of sRNA quantitative variation analyzed using an experimental population derived from an elite rice hybrid
Q92093077	Genetic characterization of a unique neuroendocrine transdifferentiation prostate circulating tumor cell-derived eXplant model
Q92830480	Genetic compensation triggered by mutant mRNA degradation
Q33694743	Genetic degeneration of old and young Y chromosomes in the flowering plant Rumex hastatulus
Q50915851	Genetic deletion or small-molecule inhibition of the arginine methyltransferase PRMT5 exhibit anti-tumoral activity in mouse models of MLL-rearranged AML.
Q35796422	Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides
Q40953669	Genetic diagnosis of Mendelian disorders via RNA sequencing
Q101237555	Genetic elucidation of interconnected antibiotic pathways mediating maize innate immunity
Q37578024	Genetic evidence that Nkx2.2 acts primarily downstream of Neurog3 in pancreatic endocrine lineage development
Q34394800	Genetic influences on translation in yeast
Q90750472	Genetic map-guided genome assembly reveals a virulence-governing minichromosome in the lentil anthracnose pathogen Colletotrichum lentis
Q39485995	Genetic modifications associated with ketogenic diet treatment in the BTBRT+Tf/J mouse model of autism spectrum disorder
Q36266753	Genetic pathways for differentiation of the peripheral nervous system in ascidians
Q91529998	Genetic regulation of amphioxus somitogenesis informs the evolution of the vertebrate head mesoderm
Q90638861	Genetic regulatory variation in populations informs transcriptome analysis in rare disease
Q40953648	Genetic variation and expression changes associated with molybdate resistance from a glutathione producing wine strain of Saccharomyces cerevisiae
Q96343339	Genetics of colour variation in wild versus cultured queen loach, Botia dario (Hamilton, 1822)
Q28650280	Genetics of gene expression in CNS
Q28554418	Genome Analysis of Osteosarcoma Progression Samples Identifies FGFR1 Overexpression as a Potential Treatment Target and CHM as a Candidate Tumor Suppressor Gene
Q96303653	Genome Assembly and Annotation of Soft-Shelled Adlay (Coix lacryma-jobi Variety ma-yuen), a Cereal and Medicinal Crop in the Poaceae Family
Q35836071	Genome Modeling System: A Knowledge Management Platform for Genomics
Q38811021	Genome Mutational and Transcriptional Hotspots Are Traps for Duplicated Genes and Sources of Adaptations.
Q64077163	Genome Sequencing Illustrates the Genetic Basis of the Pharmacological Properties of
Q58700655	Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides
Q34680844	Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors.
Q33805230	Genome and Transcriptome sequence of Finger millet (Eleusine coracana (L.) Gaertn.) provides insights into drought tolerance and nutraceutical properties
Q35103155	Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: mechanisms of the biotrophic and necrotrophic phases.
Q52326042	Genome and transcriptome of the natural isopropanol producer Clostridium beijerinckii DSM6423.
Q34495191	Genome and transcriptome of the regeneration-competent flatworm, Macrostomum lignano.
Q33652971	Genome and transcriptome profiling of fibrolamellar hepatocellular carcinoma demonstrates p53 and IGF2BP1 dysregulation
Q90062838	Genome architecture facilitates phenotypic plasticity in the honeybee (Apis mellifera)
Q91648311	Genome assembly provides insights into the genome evolution and flowering regulation of orchardgrass
Q37416275	Genome characterization of the selected long- and short-sleep mouse lines
Q39560687	Genome interrogation for novel salinity tolerant Arabidopsis mutants.
Q35120349	Genome profiling of sterol synthesis shows convergent evolution in parasites and guides chemotherapeutic attack
Q35149048	Genome rearrangements can make and break small RNA genes
Q54441519	Genome rearrangements of Streptomyces albus J1074 lead to the carotenoid gene cluster activation.
Q22122071	Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species
Q41591526	Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction.
Q91595455	Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions
Q34406263	Genome structures and transcriptomes signify niche adaptation for the multiple-ion-tolerant extremophyte Schrenkiella parvula
Q59794227	Genome wide association analysis in a mouse advanced intercross line
Q35633149	Genome wide transcriptional profiling of Herbaspirillum seropedicae SmR1 grown in the presence of naringenin
Q40324539	Genome-Wide Analysis of Chromatin Accessibility in Arabidopsis Infected with Pseudomonas syringae
Q92991220	Genome-Wide Analysis of Long Non-Coding RNA Profiles in Canine Oral Melanomas
Q92724442	Genome-Wide Analysis of the miRNA-mRNAs Network Involved in Cold Tolerance in Populus simonii × P. nigra
Q36221012	Genome-Wide CRISPR Screen Identifies Regulators of Mitogen-Activated Protein Kinase as Suppressors of Liver Tumors in Mice.
Q91762655	Genome-Wide Distribution, Expression and Function Analysis of the U-Box Gene Family in Brassica oleracea L
Q92824364	Genome-Wide Identification and Characterization of Long Noncoding RNAs of Brown to White Adipose Tissue Transformation in Goats
Q61816788	Genome-Wide Identification and Transcriptional Expression of the Gene Family in Common Walnut ( L.)
Q47861434	Genome-Wide Identification by Transposon Insertion Sequencing of Escherichia coli K1 Genes Essential for in vitro Growth, Gastrointestinal Colonizing Capacity and Survival in Serum
Q30274762	Genome-Wide Identification of Basic Helix-Loop-Helix and NF-1 Motifs Underlying GR Binding Sites in Male Rat Hippocampus.
Q47661112	Genome-Wide Identification of Fitness Factors in Mastitis-Associated Escherichia coli
Q38849869	Genome-Wide Identification of MESP1 Targets Demonstrates Primary Regulation Over Mesendoderm Gene Activity.
Q28596215	Genome-Wide Identification of MicroRNAs and Their Targets in the Leaves and Fruits of Eucommia ulmoides Using High-Throughput Sequencing
Q33973280	Genome-Wide Mapping of the Distribution of CarD, RNAP σ(A), and RNAP β on the Mycobacterium smegmatis Chromosome using Chromatin Immunoprecipitation Sequencing
Q64124135	Genome-Wide Patterns of Gene Expression in a Wild Primate Indicate Species-Specific Mechanisms Associated with Tolerance to Natural Simian Immunodeficiency Virus Infection.
Q59335750	Genome-Wide Profiling of -Responsive MicroRNAs in the Exotic Whitefly, (Gennadius) Biotype Q
Q36913970	Genome-Wide Transcriptional Profiling Reveals Two Distinct Outcomes in Central Nervous System Infections of Rabies Virus
Q98735798	Genome-Wide Transcriptional Regulation of the Long Non-coding RNA Steroid Receptor RNA Activator in Human Erythroblasts
Q41746387	Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12
Q37531482	Genome-Wide Transcriptional and Post-transcriptional Regulation of Innate Immune and Defense Responses of Bovine Mammary Gland to Staphylococcus aureus
Q90618499	Genome-Wide Transcriptome Analysis Reveals Intermittent Fasting-Induced Metabolic Rewiring in the Liver
Q57812959	Genome-Wide Transcriptomic Analysis Reveals Insights into the Response to (CBCVd) in Hop ( L.)
Q46896851	Genome-defence small RNAs exapted for epigenetic mating-type inheritance.
Q59812179	Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth
Q42273391	Genome-scale analysis to identify prognostic markers in patients with early-stage pancreatic ductal adenocarcinoma after pancreaticoduodenectomy.
Q58790645	Genome-scale analysis to identify prognostic microRNA biomarkers in patients with early stage pancreatic ductal adenocarcinoma after pancreaticoduodenectomy
Q36178484	Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library
Q31118052	Genome-scale transcriptional analyses of first-generation interspecific sunflower hybrids reveals broad regulatory compatibility
Q47903152	Genome-scale transcriptomic insights into early-stage fruit development in woodland strawberry Fragaria vesca
Q91756413	Genome-wide ChIP-seq data with a transcriptome analysis reveals the groups of genes regulated by histone demethylase LSD1 inhibition in esophageal squamous cell carcinoma cells
Q35925694	Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi-Goutières syndrome
Q38635881	Genome-wide DNA methylation and transcriptome analyses reveal genes involved in immune responses of pig peripheral blood mononuclear cells to poly I:C.
Q36970703	Genome-wide DNA methylation profiles changes associated with constant heat stress in pigs as measured by bisulfite sequencing
Q35819696	Genome-wide DNA methylome variation in two genetically distinct chicken lines using MethylC-seq.
Q57791522	Genome-wide analyses reveal the IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation
Q42214295	Genome-wide analysis of ATP-binding cassette (ABC) transporters in the sweetpotato whitefly, Bemisia tabaci
Q36680459	Genome-wide analysis of DNA methylation and gene expression defines molecular characteristics of Crohn's disease-associated fibrosis
Q37351529	Genome-wide analysis of alternative transcripts in human breast cancer.
Q38709880	Genome-wide analysis of condensin binding in Caenorhabditis elegans
Q90066123	Genome-wide analysis of cotton C2H2-zinc finger transcription factor family and their expression analysis during fiber development
Q39888187	Genome-wide analysis of dorsal and ventral transcriptomes of the Xenopus laevis gastrula.
Q36024254	Genome-wide analysis of gene expression reveals gene regulatory networks that regulate chasmogamous and cleistogamous flowering in Pseudostellaria heterophylla (Caryophyllaceae)
Q64067932	Genome-wide analysis of long non-coding RNAs unveils the regulatory roles in the heat tolerance of Chinese cabbage (Brassica rapa ssp.chinensis)
Q35876068	Genome-wide analysis of translational efficiency reveals distinct but overlapping functions of yeast DEAD-box RNA helicases Ded1 and eIF4A.
Q64989391	Genome-wide analysis reveals four key transcription factors associated with cadmium stress in creeping bentgrass (Agrostis stolonifera L.).
Q90049157	Genome-wide analysis reveals molecular convergence underlying domestication in 7 bird and mammals
Q34551352	Genome-wide analysis reveals the unique stem cell identity of human amniocytes
Q24620643	Genome-wide annotation and quantitation of translation by ribosome profiling
Q31067810	Genome-wide assessment of differential translations with ribosome profiling data
Q90065997	Genome-wide association and differential expression analysis of salt tolerance in Gossypium hirsutum L at the germination stage
Q34370942	Genome-wide discovery and differential regulation of conserved and novel microRNAs in chickpea via deep sequencing
Q90076359	Genome-wide discovery and functional prediction of salt-responsive lncRNAs in duckweed
Q40083025	Genome-wide discovery of novel M1T1 group A streptococcal determinants important for fitness and virulence during soft-tissue infection.
Q47293908	Genome-wide dose-dependent inhibition of histone deacetylases studies reveal their roles in enhancer remodeling and suppression of oncogenic super-enhancers.
Q60918960	Genome-wide dynamic network analysis reveals a critical transition state of flower development in Arabidopsis
Q34203592	Genome-wide dynamic transcriptional profiling in Clostridium beijerinckii NCIMB 8052 using single-nucleotide resolution RNA-Seq
Q36266332	Genome-wide exonic small interference RNA-mediated gene silencing regulates sexual reproduction in the homothallic fungus Fusarium graminearum
Q35854009	Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology
Q30909599	Genome-wide expression profiling and phenotypic evaluation of European maize inbreds at seedling stage in response to heat stress
Q35101083	Genome-wide high-throughput screening to investigate essential genes involved in methicillin-resistant Staphylococcus aureus Sequence Type 398 survival
Q34267335	Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris)
Q33912068	Genome-wide identification and characterization of circular RNAs by high throughput sequencing in soybean
Q35958705	Genome-wide identification and functional prediction of novel and fungi-responsive lincRNAs in Triticum aestivum
Q92151146	Genome-wide identification of GhAAI genes reveals that GhAAI66 triggers a phase transition to induce early flowering
Q38879390	Genome-wide identification of Wnt/β-catenin transcriptional targets during Xenopus gastrulation.
Q34831419	Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq
Q35880386	Genome-wide identification of hypoxia-induced enhancer regions
Q42718047	Genome-wide identification of long intergenic noncoding RNA genes and their potential association with domestication in pigs.
Q97422371	Genome-wide identification of microRNAs involved in the regulation of fruit ripening and climacteric stages in melon (Cucumis melo)
Q33950714	Genome-wide identification of transcript start and end sites by transcript isoform sequencing
Q42165154	Genome-wide identification of translationally inhibited and degraded miR-155 targets using RNA-interacting protein-IP.
Q35312693	Genome-wide in silico identification of new conserved and functional retinoic acid receptor response elements (direct repeats separated by 5 bp)
Q36684862	Genome-wide localization of exosome components to active promoters and chromatin insulators in Drosophila
Q33848839	Genome-wide mapping of miRNAs expressed in embryonic stem cells and pluripotent stem cells generated by different reprogramming strategies
Q35051702	Genome-wide mapping of transcriptional start sites defines an extensive leaderless transcriptome in Mycobacterium tuberculosis
Q36207453	Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays
Q28277658	Genome-wide nucleosome positioning during embryonic stem cell development
Q28655491	Genome-wide patterns of differentiation among house mouse subspecies
Q30277994	Genome-wide predictors of NF-κB recruitment and transcriptional activity
Q37652276	Genome-wide primary transcriptome analysis of H2-producing archaeon Thermococcus onnurineus NA1.
Q35160857	Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti.
Q57035926	Genome-wide profiling of histone H3K27 acetylation featured fatty acid signalling in pancreatic beta cells in diet-induced obesity in mice
Q48269600	Genome-wide profiling of the PIWI-interacting RNA-mRNA regulatory networks in epithelial ovarian cancers.
Q36378134	Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers
Q30733458	Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis
Q35876055	Genome-wide specificity of DNA binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators
Q61447546	Genome-wide systematic characterization of bZIP transcription factors and their expression profiles during seed development and in response to salt stress in peanut
Q33355813	Genome-wide transcript analysis of early maize leaf development reveals gene cohorts associated with the differentiation of C4 Kranz anatomy.
Q34125852	Genome-wide transcriptional profiling of Botrytis cinerea genes targeting plant cell walls during infections of different hosts
Q34162270	Genome-wide transcriptional profiling of appressorium development by the rice blast fungus Magnaporthe oryzae
Q35147809	Genome-wide transcriptional profiling of skin and dorsal root ganglia after ultraviolet-B-induced inflammation
Q34695909	Genome-wide transcriptional responses of two metal-tolerant symbiotic Mesorhizobium isolates to zinc and cadmium exposure
Q35871890	Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines.
Q64236981	Genome-wide transcriptome analysis reveals the molecular mechanism of high temperature-induced floral abortion in Litchi chinensis
Q41886211	Genome-wide transcriptome and antioxidant analyses on gamma-irradiated phases of deinococcus radiodurans R1.
Q34685530	Genome-wide transcriptome profiles of rice hybrids and their parents
Q33674811	Genome-wide transcriptome profiling of radish (Raphanus sativus L.) in response to vernalization.
Q57279772	Genome-wide transcriptome profiling of transgenic hop (Humulus lupulus L.) constitutively overexpressing HlWRKY1 and HlWDR1 transcription factors
Q92643616	Genome-wide transcriptomic analysis of a desert willow, Salix psammophila, reveals the function of hub genes SpMDP1 and SpWRKY33 in drought tolerance
Q94457589	Genome-wide transcriptomic analysis of the response of Botrytis cinerea to wuyiencin
Q37129128	Genome-wide transcriptomic analysis uncovers the molecular basis underlying early flowering and apetalous characteristic in Brassica napus L
Q38804936	Genome-wide, integrative analysis implicates microRNA dysregulation in autism spectrum disorder.
Q34727865	Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos
Q64325005	Genome‑scale analysis to identify potential prognostic microRNA biomarkers for predicting overall survival in patients with colon adenocarcinoma
Q92015734	Genome‑wide investigation of the clinical significance and prospective molecular mechanisms of kinesin family member genes in patients with lung adenocarcinoma
Q35993683	Genomic Landscape Survey Identifies SRSF1 as a Key Oncodriver in Small Cell Lung Cancer
Q36100788	Genomic Methods Take the Plunge: Recent Advances in High-Throughput Sequencing of Marine Mammals.
Q92782897	Genomic Survey of Salt Acclimation-Related Genes in the Halophilic Cyanobacterium Euhalothece sp. Z-M001
Q37408629	Genomic analyses identify recurrent MEF2D fusions in acute lymphoblastic leukaemia
Q35906075	Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12.
Q36292801	Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses
Q57296600	Genomic analysis of RNA-Seq and sRNA-Seq data identifies potential regulatory sRNAs and their functional roles in Staphylococcus aureus
Q37135787	Genomic and expression analysis of transition proteins in Drosophila
Q36483568	Genomic and physiological footprint of the Deepwater Horizon oil spill on resident marsh fishes.
Q36254274	Genomic and transcriptomic comparison between Staphylococcus aureus strains associated with high and low within herd prevalence of intra-mammary infection.
Q35926643	Genomic and transcriptomic comparison of nucleotide variations for insights into bruchid resistance of mungbean (Vigna radiata [L.] R. Wilczek)
Q34984553	Genomic and transcriptomic differences in community acquired methicillin resistant Staphylococcus aureus USA300 and USA400 strains.
Q91717535	Genomic and transcriptomic insights into molecular basis of sexually dimorphic nuptial spines in Leptobrachium leishanense
Q30585033	Genomic basis for coral resilience to climate change
Q34423070	Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida
Q34261289	Genomic characterization and transcriptional studies of the starch-utilizing strain Bifidobacterium adolescentis 22L.
Q90726984	Genomic characterization of cervical cancer based on human papillomavirus status
Q36074021	Genomic characterization of plant cell wall degrading enzymes and in silico analysis of xylanses and polygalacturonases of Fusarium virguliforme
Q36187495	Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations
Q40583291	Genomic limitations to RNA sequencing expression profiling
Q33983612	Genomic mapping of cAMP receptor protein (CRP Mt) in Mycobacterium tuberculosis: relation to transcriptional start sites and the role of CRPMt as a transcription factor
Q27319937	Genomic mechanisms accounting for the adaptation to parasitism in nematode-trapping fungi
Q38918003	Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation
Q34042392	Genomic profiling of collaborative cross founder mice infected with respiratory viruses reveals novel transcripts and infection-related strain-specific gene and isoform expression
Q46261379	Genomic structural variations lead to dysregulation of important coding and non-coding RNA species in dilated cardiomyopathy.
Q35887385	Genomic structure and expression of the human serotonin 2A receptor gene (HTR2A) locus: identification of novel HTR2A and antisense (HTR2A-AS1) exons
Q64057973	Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm
Q44068860	Genomic, Transcriptomic, and Phenotypic Analyses of Neisseria meningitidis Isolates from Disease Patients and Their Household Contacts.
Q28607226	Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome
Q35193783	Genomics of homoploid hybrid speciation: diversity and transcriptional activity of long terminal repeat retrotransposons in hybrid sunflowers
Q31154892	Genomics pipelines and data integration: challenges and opportunities in the research setting.
Q57281301	Geospatial variation in co-occurrence networks of nitrifying microbial guilds
Q39172256	Gestational food restriction decreases placental interleukin-10 expression and markers of autophagy and endoplasmic reticulum stress in murine intrauterine growth restriction
Q35833161	Getting the most out of RNA-seq data analysis
Q30363420	Gfi1Cre mice have early onset progressive hearing loss and induce recombination in numerous inner ear non-hair cells.
Q57456633	Gfi1aa and Gfi1b set the pace for primitive erythroblast differentiation from hemangioblasts in the zebrafish embryo
Q64072005	Gfi1b regulates the level of Wnt/β-catenin signaling in hematopoietic stem cells and megakaryocytes
Q90218894	GhWRKY70D13 Regulates Resistance to Verticillium dahliae in Cotton Through the Ethylene and Jasmonic Acid Signaling Pathways
Q40257241	Giardia Alters Commensal Microbial Diversity throughout the Murine Gut.
Q35142590	Gibberellin-induced changes in the transcriptome of grapevine (Vitis labrusca × V. vinifera) cv. Kyoho flowers
Q89143195	Gibberellins negatively modulate ovule number in plants
Q42777151	Gigaspora margarita with and without its endobacterium shows adaptive responses to oxidative stress
Q39519691	Gld2-catalyzed 3' monoadenylation of miRNAs in the hippocampus has no detectable effect on their stability or on animal behavior.
Q38816630	Glioblastoma Stem Cells Respond to Differentiation Cues but Fail to Undergo Commitment and Terminal Cell-Cycle Arrest
Q38938771	Global 3' UTR shortening has a limited effect on protein abundance in proliferating T cells
Q38956956	Global MEF2 target gene analysis in cardiac and skeletal muscle reveals novel regulation of DUSP6 by p38MAPK-MEF2 signaling
Q37486728	Global Transcriptional Analysis Reveals the Complex Relationship between Tea Quality, Leaf Senescence and the Responses to Cold-Drought Combined Stress in Camellia sinensis
Q58781591	Global Transcriptome Analyses Reveal Differentially Expressed Genes of Six Organs and Putative Genes Involved in (Iso)flavonoid Biosynthesis in
Q49282210	Global Transcriptomic Changes Induced by Infection of Cucumber (Cucumis sativus L.) with Mild and Severe Variants of Hop Stunt Viroid.
Q35114709	Global analysis of Chlorella variabilis NC64A mRNA profiles during the early phase of Paramecium bursaria chlorella virus-1 infection
Q47118659	Global analysis of gene expression mediated by OX1 orexin receptor signaling in a hypothalamic cell line.
Q34255354	Global analysis of mRNA decay intermediates in Bacillus subtilis wild-type and polynucleotide phosphorylase-deletion strains.
Q33659512	Global analysis of p53-regulated transcription identifies its direct targets and unexpected regulatory mechanisms.
Q34945584	Global analysis of the sporulation pathway of Clostridium difficile.
Q36165327	Global chromatin state analysis reveals lineage-specific enhancers during the initiation of human T helper 1 and T helper 2 cell polarization
Q37512104	Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation
Q33797064	Global effects of the CSR-1 RNA interference pathway on the transcriptional landscape
Q33694774	Global gene expression analysis provides insight into local adaptation to geothermal streams in tadpoles of the Andean toad Rhinella spinulosa.
Q34466853	Global gene expression of the inner cell mass and trophectoderm of the bovine blastocyst.
Q35218482	Global gene expression patterns of grass carp following compensatory growth
Q35532336	Global gene expression profiling of brown to white adipose tissue transformation in sheep reveals novel transcriptional components linked to adipose remodeling
Q28389557	Global gene expression response of a population exposed to benzene: a pilot study exploring the use of RNA-sequencing technology
Q36850426	Global genomic profiling reveals an extensive p53-regulated autophagy program contributing to key p53 responses
Q42705414	Global profiling of stimulus-induced polyadenylation in cells using a poly(A) trap
Q39496139	Global repositioning of transcription start sites in a plant-fermenting bacterium
Q58802365	Global rewiring of cellular metabolism renders Saccharomyces cerevisiae Crabtree negative
Q92757169	Global tissue-specific transcriptome analysis of Citrus sinensis fruit across six developmental stages
Q90373466	Global transcriptional analysis of Geobacter sulfurreducens under palladium reducing conditions reveals new key cytochromes involved
Q36034176	Global transcriptional and miRNA insights into bases of heterosis in hybridization of Cyprinidae
Q42177063	Global transcriptional response of Clostridium difficile carrying the CD38 prophage
Q89457787	Global transcriptome analysis of alfalfa reveals six key biological processes of senescent leaves
Q40731795	Global transcriptome analysis of formalin-fixed prostate cancer specimens identifies biomarkers of disease recurrence
Q91904117	Global transcriptome and gene co-expression network analyses on the development of distyly in Primula oreodoxa
Q57459831	Global transcriptome and weighted gene co-expression network analyses reveal hybrid-specific modules and candidate genes related to plant height development in maize
Q31121707	Global transcriptome profiles of Camellia sinensis during cold acclimation
Q28728409	Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus
Q33762888	Global transcriptome responses including small RNAs during mixed-species interactions with methicillin-resistant Staphylococcus aureus and Pseudomonas aeruginosa
Q34050208	Global transcriptome-wide analysis of CIK cells identify distinct roles of IL-2 and IL-15 in acquisition of cytotoxic capacity against tumor
Q41833611	Global translational impacts of the loss of the tRNA modification t6A in yeast.
Q99555142	Glucagon acutely regulates hepatic amino acid catabolism and the effect may be disturbed by steatosis
Q34620420	Glucocorticoid-induced changes in gene expression of airway smooth muscle in patients with asthma
Q91916997	Glucocorticoids counteract hypertrophic effects of myostatin inhibition in dystrophic muscle
Q30664742	Glucocorticoids promote structural and functional maturation of foetal cardiomyocytes: a role for PGC-1α.
Q93047613	Glucose Metabolism Drives Histone Acetylation Landscape Transitions that Dictate Muscle Stem Cell Function
Q36097967	Glycan cross-feeding activities between bifidobacteria under in vitro conditions
Q51248009	Glycerol stress in Saccharomyces cerevisiae: Cellular responses and evolved adaptations.
Q27311626	Glycomic Characterization of Induced Pluripotent Stem Cells Derived from a Patient Suffering from Phosphomannomutase 2 Congenital Disorder of Glycosylation (PMM2-CDG)
Q41037110	Gold nanoparticle-based miR155 antagonist macrophage delivery restores the cardiac function in ovariectomized diabetic mouse model
Q52667662	Gonad Transcriptome Analysis of the Pacific Oyster Crassostrea gigas Identifies Potential Genes Regulating the Sex Determination and Differentiation Process.
Q30391240	Gonad transcriptome analysis of pearl oyster Pinctada margaritifera: identification of potential sex differentiation and sex determining genes
Q30912257	Goodness-of-fit tests and model diagnostics for negative binomial regression of RNA sequencing data
Q40054728	Goose Mx and OASL Play Vital Roles in the Antiviral Effects of Type I, II, and III Interferon against Newly Emerging Avian Flavivirus
Q90753044	Grad-seq in a Gram-positive bacterium reveals exonucleolytic sRNA activation in competence control
Q98566333	Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli
Q89701678	Grafting alters tomato transcriptome and enhances tolerance to an airborne virus infection
Q30791965	Grainyhead-like 2 inhibits the coactivator p300, suppressing tubulogenesis and the epithelial-mesenchymal transition.
Q36559066	Grapevine Rootstocks Differentially Affect the Rate of Ripening and Modulate Auxin-Related Genes in Cabernet Sauvignon Berries.
Q39348436	Groundwater shapes sediment biogeochemistry and microbial diversity in a submerged Great Lake sinkhole.
Q28661505	Grouped False-Discovery Rate for Removing the Gene-Set-Level Bias of RNA-seq
Q52691014	Growth Hormone Overexpression Disrupts Reproductive Status Through Actions on Leptin.
Q64101576	Growth Kinetics, Carbon Isotope Fractionation, and Gene Expression in the Hyperthermophile during Hydrogen-Limited Growth and Interspecies Hydrogen Transfer
Q92096745	Growth hormone-mediated reprogramming of macrophage transcriptome and effector functions
Q44602896	Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation
Q47121717	Guanylate-binding protein-1 is a potential new therapeutic target for triple-negative breast cancer.
Q61443959	Guide RNAs with embedded barcodes boost CRISPR-pooled screens
Q92598938	Guide for library design and bias correction for large-scale transcriptome studies using highly multiplexed RNAseq methods
Q37559218	Gut Microbiome of the Canadian Arctic Inuit
Q64254508	Gut microbiome patterns correlate with higher postoperative complication rates after pancreatic surgery
Q59803911	Gut microbiome transition across a lifestyle gradient in Himalaya
Q64990293	Gut microflora may facilitate adaptation to anthropic habitat: A comparative study in Rattus.
Q35991656	Gypsum amendment to rice paddy soil stimulated bacteria involved in sulfur cycling but largely preserved the phylogenetic composition of the total bacterial community.
Q35576229	H2A.Z marks antisense promoters and has positive effects on antisense transcript levels in budding yeast
Q35740207	H4K12ac is regulated by estrogen receptor-alpha and is associated with BRD4 function and inducible transcription.
Q36168094	HCMV Displays a Unique Transcriptome of Immunomodulatory Genes in Primary Monocyte-Derived Cell Types
Q64105197	HDAC1 and HDAC2 independently regulate common and specific intrinsic responses in murine enteroids
Q46974573	HEB associates with PRC2 and SMAD2/3 to regulate developmental fates
Q36364376	HERC5 is a prognostic biomarker for post-liver transplant recurrent human hepatocellular carcinoma
Q35566776	HITS-CLIP analysis uncovers a link between the Kaposi's sarcoma-associated herpesvirus ORF57 protein and host pre-mRNA metabolism
Q35726813	HIV-1 RNAs are Not Part of the Argonaute 2 Associated RNA Interference Pathway in Macrophages
Q34612239	HIV-1 infection causes a down-regulation of genes involved in ribosome biogenesis
Q55031063	HIV-exposure, early life feeding practices and delivery mode impacts on faecal bacterial profiles in a South African birth cohort.
Q38706874	HLA class I loss in metachronous metastases prevents continuous T cell recognition of mutated neoantigens in a human melanoma model
Q39039932	HMCan-diff: a method to detect changes in histone modifications in cells with different genetic characteristics
Q30666001	HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data.
Q64008514	HMGA2 promotes long-term engraftment and myeloerythroid differentiation of human hematopoietic stem and progenitor cells
Q91957857	HNRNPR Variants that Impair Homeobox Gene Expression Drive Developmental Disorders in Humans
Q64133306	HOS15 Interacts with the Histone Deacetylase HDA9 and the Evening Complex to Epigenetically Regulate the Floral Activator GIGANTEA
Q90482820	HRPK-1, a conserved KH-domain protein, modulates microRNA activity during Caenorhabditis elegans development
Q35214688	HSP105 recruits protein phosphatase 2A to dephosphorylate β-catenin.
Q91577971	HTRgene: a computational method to perform the integrated analysis of multiple heterogeneous time-series data: case analysis of cold and heat stress response signaling genes in Arabidopsis
Q28660023	HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis
Q39949181	Habitat-Associated Life History and Stress-Tolerance Variation in Arabidopsis arenosa
Q37673144	Hantavirus immunology of rodent reservoirs: current status and future directions
Q35129007	Haploinsufficiency screen highlights two distinct groups of ribosomal protein genes essential for embryonic stem cell fate.
Q35286142	Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads.
Q59341066	Harnessing Metabolic Regulation to Increase Hfq-Dependent Antibiotic Susceptibility in
Q58696532	Harnessing the biological complexity of Big Data from LINCS gene expression signatures
Q28544978	Heart mitochondrial proteome study elucidates changes in cardiac energy metabolism and antioxidant PRDX3 in human dilated cardiomyopathy
Q34542113	Heart structure-specific transcriptomic atlas reveals conserved microRNA-mRNA interactions
Q37034143	Heat Stress Affects Pi-related Genes Expression and Inorganic Phosphate Deposition/Accumulation in Barley
Q35149520	Heat shock alters the expression of schizophrenia and autism candidate genes in an induced pluripotent stem cell model of the human telencephalon
Q39288099	Heat stress yields a unique MADS box transcription factor in determining seed size and thermal sensitivity.
Q58613502	Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences
Q59069506	Helios is a key transcriptional regulator of outer hair cell maturation
Q58756405	Hepatic Ago2-mediated RNA silencing controls energy metabolism linked to AMPK activation and obesity-associated pathophysiology
Q47096026	Hepatic Dysfunction Caused by Consumption of a High-Fat Diet.
Q36434022	Hepatic Long Intergenic Noncoding RNAs: High Promoter Conservation and Dynamic, Sex-Dependent Transcriptional Regulation by Growth Hormone
Q42236944	Hepatic metallothionein expression in chronic hepatitis C virus infection is IFNL3 genotype-dependent.
Q98205344	Hepatopancreas immune response during molt cycle in the mud crab, Scylla paramamosain
Q43859002	Here We Are, But Where Do We Go? A Systematic Review of Crustacean Transcriptomic Studies from 2014-2015.
Q35949968	Heritable gene expression differences between apomictic clone members in Taraxacum officinale: Insights into early stages of evolutionary divergence in asexual plants.
Q33652158	Heterarchy of transcription factors driving basal and luminal cell phenotypes in human urothelium
Q96816379	Heterochromatin establishment during early mammalian development is regulated by pericentromeric RNA and characterized by non-repressive H3K9me3
Q33654360	Heterochronic meiotic misexpression in an interspecific yeast hybrid
Q34216236	Heterogeneity in the inter-tumor transcriptome of high risk prostate cancer
Q38842225	Heterogeneous lineage marker expression in naive embryonic stem cells is mostly due to spontaneous differentiation
Q34418339	Heterogeneous nuclear ribonucleoprotein L-like (hnRNPLL) and elongation factor, RNA polymerase II, 2 (ELL2) are regulators of mRNA processing in plasma cells
Q88924914	Heterozygous IDH1R132H/WT created by "single base editing" inhibits human astroglial cell growth by downregulating YAP
Q64270428	Heterozygous diploid structure of ZN1 contributes efficient biodetoxification on solid pretreated corn stover
Q52658466	Hex1-related transcriptome of Trichoderma atroviride reveals expression patterns of ABC transporters associated with tolerance to dichlorvos.
Q90152487	Hibernation induces widespread transcriptional remodeling in metabolic tissues of the grizzly bear
Q36827180	Hierarchical Modeling and Differential Expression Analysis for RNA-seq Experiments with Inbred and Hybrid Genotypes
Q33730757	Hierarchical expression of genes controlled by the Bacillus subtilis global regulatory protein CodY.
Q28552067	High Persister Mutants in Mycobacterium tuberculosis
Q39627615	High light exposure on seed coat increases lipid accumulation in seeds of castor bean (Ricinus communis L.), a nongreen oilseed crop
Q36925685	High light intensity plays a major role in emergence of population level variation in Arabidopsis thaliana along an altitudinal gradient
Q36438398	High mobility group box 1-induced epithelial mesenchymal transition in human airway epithelial cells
Q91841854	High rumen degradable starch decreased goat milk fat via trans-10, cis-12 conjugated linoleic acid-mediated downregulation of lipogenesis genes, particularly, INSIG1
Q42778104	High throughput de novo RNA sequencing elucidates novel responses in Penicillium chrysogenum under microgravity
Q30388724	High throughput sequencing of small RNAs transcriptomes in two Crassostrea oysters identifies microRNAs involved in osmotic stress response
Q46270374	High throughput transcriptome analysis of coffee reveals prehaustorial resistance in response to Hemileia vastatrix infection
Q89898731	High-Throughput CRISPR/Cas9 Mutagenesis Streamlines Trait Gene Identification in Maize
Q33572772	High-Throughput Sequencing and Co-Expression Network Analysis of lncRNAs and mRNAs in Early Brain Injury Following Experimental Subarachnoid Haemorrhage
Q28548262	High-Throughput Sequencing and De Novo Assembly of Red and Green Forms of the Perilla frutescens var. crispa Transcriptome
Q40106497	High-definition CpG methylation of novel genes in gastric carcinogenesis identified by next-generation sequencing.
Q35834781	High-density P300 enhancers control cell state transitions
Q89473684	High-depth transcriptomic profiling reveals the temporal gene signature of human mesenchymal stem cells during chondrogenesis
Q36840799	High-fat diet enhances stemness and tumorigenicity of intestinal progenitors
Q35791181	High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome
Q38848041	High-quality genome assembly of Capsella bursa-pastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution.
Q41862220	High-resolution analysis with novel cell-surface markers identifies routes to iPS cells
Q35634502	High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
Q64980944	High-resolution genetic mapping of putative causal interactions between regions of open chromatin.
Q34374185	High-resolution mapping of a genetic locus regulating preferential carbohydrate intake, total kilocalories, and food volume on mouse chromosome 17
Q35634495	High-resolution mapping of open chromatin in the rice genome
Q55380225	High-resolution profiles of the Streptococcus mitis CSP signaling pathway reveal core and strain-specific regulated genes.
Q33569251	High-resolution profiling of NMD targets in yeast reveals translational fidelity as a basis for substrate selection
Q36559171	High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis
Q91752343	High-resolution, strand-specific R-loop mapping via S9.6-based DNA-RNA immunoprecipitation and high-throughput sequencing
Q57027021	High-salt-recovered sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies
Q35735664	High-throughput and quantitative genome-wide messenger RNA sequencing for molecular phenotyping
Q35842588	High-throughput mRNA and miRNA profiling of epithelial-mesenchymal transition in MDCK cells
Q35143589	High-throughput screening of a CRISPR/Cas9 library for functional genomics in human cells
Q46814473	High-throughput sequencing analyses of XX genital ridges lacking FOXL2 reveal DMRT1 up-regulation before SOX9 expression during the sex-reversal process in goats
Q92714592	High-throughput sequencing analysis of lncRNAs in hippocampus tissues with hypoxic-ischemic brain damage
Q36953230	High-throughput sequencing of cytosine methylation in plant DNA
Q35836890	High-throughput sequencing of human plasma RNA by using thermostable group II intron reverse transcriptases.
Q34555861	High-throughput sequencing of microRNAs in peripheral blood mononuclear cells: identification of potential weight loss biomarkers.
Q34215512	High-throughput sequencing of plasma microRNA in chronic fatigue syndrome/myalgic encephalomyelitis
Q35958233	High-throughput sequencing reveals altered expression of hepatic microRNAs in nonalcoholic fatty liver disease-related fibrosis
Q33985052	High-throughput sequencing reveals small RNAs involved in ASGV infection.
Q34108945	High-throughput transcriptome sequencing identifies candidate genetic modifiers of vulnerability to fetal alcohol spectrum disorders
Q35865474	High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants
Q61797025	Higher abundance of enterovirus A species in the gut of children with islet autoimmunity
Q34624390	Higher order asymptotics for negative binomial regression inferences from RNA-sequencing data
Q27330310	Highly efficient lipid production in the green alga Parachlorella kessleri: draft genome and transcriptome endorsed by whole-cell 3D ultrastructure
Q34357459	Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos
Q38874765	Highly potent host external immunity acts as a strong selective force enhancing rapid parasite virulence evolution.
Q36338669	Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements
Q36569497	Histological and transcriptome analyses of testes from Duroc and Meishan boars
Q39794645	Histone Chaperone SSRP1 is Essential for Wnt Signaling Pathway Activity During Osteoblast Differentiation
Q42775646	Histone H3.3 regulates mitotic progression in mouse embryonic fibroblasts
Q38776008	Histone H3.3K27M Represses p16 to Accelerate Gliomagenesis in a Murine Model of DIPG.
Q38740306	Histone chaperone ASF1B promotes human β-cell proliferation via recruitment of histone H3.3.
Q55269967	Histone deacetylation promotes transcriptional silencing at facultative heterochromatin.
Q43065475	Histone propionylation is a mark of active chromatin
Q24293198	Histone variant H2A.Bbd is associated with active transcription and mRNA processing in human cells
Q28829083	Homoeologue expression insights into the basis of growth heterosis at the intersection of ploidy and hybridity in Cyprinidae
Q51713574	Homologues of CsLOB1 in citrus function as disease susceptibility genes in citrus canker.
Q59794230	Honey bee Royalactin unlocks conserved pluripotency pathway in mammals
Q24617246	Honey constituents up-regulate detoxification and immunity genes in the western honey bee Apis mellifera
Q36067056	Hormetic effect of rotenone in primary human fibroblasts
Q36306159	Hormone-regulated defense and stress response networks contribute to heterosis in Arabidopsis F1 hybrids
Q64228485	Host Transcriptomics as a Tool to Identify Diagnostic and Mechanistic Immune Signatures of Tuberculosis
Q35947933	Host and non-host roots in rice: cellular and molecular approaches reveal differential responses to arbuscular mycorrhizal fungi
Q45943269	Host cell transcriptome modification upon exogenous HPV16 L2 protein expression.
Q38752236	Host genetic modifiers of nonproductive angiogenesis inhibit breast cancer.
Q35488618	Host proteome correlates of vaccine-mediated enhanced disease in a mouse model of respiratory syncytial virus infection
Q35910975	Host-Microbiota Interactions in the Pathogenesis of Antibiotic-Associated Diseases
Q41991541	Host-derived fatty acids activate type VII secretion in Staphylococcus aureus
Q37642474	Hotspots of aberrant enhancer activity punctuate the colorectal cancer epigenome.
Q34523883	How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?
Q64271402	How fall dormancy benefits alfalfa winter-survival? Physiologic and transcriptomic analyses of dormancy process
Q38889056	How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?
Q47191831	How to make a tumour: cell type specific dissection of Ustilago maydis-induced tumour development in maize leaves.
Q46276571	How to normalize metatranscriptomic count data for differential expression analysis
Q47865612	How to optimize the precision of allele and haplotype frequency estimates using pooled-sequencing data
Q63648100	How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana
Q40104195	Hsf1 and Hsp90 orchestrate temperature-dependent global transcriptional remodelling and chromatin architecture in Candida albicans.
Q46714305	Hsp12p and PAU genes are involved in ecological interactions between natural yeast strains
Q38437926	Human Dental Pulp Stem Cells Are More Effective Than Human Bone Marrow-Derived Mesenchymal Stem Cells in Cerebral Ischemic Injury
Q49573470	Human Induced Pluripotent Stem Cell-Derived Macrophages for Unraveling Human Macrophage Biology.
Q92404410	Human Pleural Fluid Elicits Pyruvate and Phenylalanine Metabolism in Acinetobacter baumannii to Enhance Cytotoxicity and Immune Evasion
Q24300767	Human RNA methyltransferase BCDIN3D regulates microRNA processing
Q37093117	Human Thanatomicrobiome Succession and Time Since Death
Q38957719	Human Tra2 proteins jointly control a CHEK1 splicing switch among alternative and constitutive target exons
Q42409260	Human Wound-Healing Research: Issues and Perspectives for Studies Using Wide-Scale Analytic Platforms
Q34475549	Human genomics. The human transcriptome across tissues and individuals
Q33729666	Human intestinal tissue with adult stem cell properties derived from pluripotent stem cells
Q45260850	Human milk exosomes and their microRNAs survive digestion in vitro and are taken up by human intestinal cells
Q56798178	Human neuroepithelial stem cell regional specificity enables spinal cord repair through a relay circuit
Q91386510	Human pleural fluid triggers global changes in the transcriptional landscape of Acinetobacter baumannii as an adaptive response to stress
Q92251817	Human sperm displays rapid responses to diet
Q28654799	Humanized Foxp2 accelerates learning by enhancing transitions from declarative to procedural performance
Q47107738	Hybrid Sequencing of Full-Length cDNA Transcripts of Stems and Leaves in Dendrobium officinale.
Q34395064	Hybrid mice reveal parent-of-origin and Cis- and trans-regulatory effects in the retina
Q38921348	Hybrid sterility and evolution in Hawaiian Drosophila: differential gene and allele-specific expression analysis of backcross males
Q37585330	Hydrogel scaffolds promote neural gene expression and structural reorganization in human astrocyte cultures
Q92985260	Hydrophilic bile acids prevent liver damage caused by lack of biliary phospholipid in Mdr2-/- mice
Q36953661	Hyperlipidemia-associated gene variations and expression patterns revealed by whole-genome and transcriptome sequencing of rabbit models.
Q55002652	Hypermethylation of TRIM59 and KLF14 Influences Cell Death Signaling in Familial Alzheimer's Disease.
Q59384336	Hypomethylated pollen bypasses the interploidy hybridization barrier in Arabidopsis
Q35282599	Hypothalamic gene expression underlying pre-hibernation satiety
Q37672589	Hypothalamic transcriptome analysis of congenic-derived F2 mice (chromosome 17:3-45 Mb) exhibiting preferential carbohydrate (versus fat) intake.
Q60585225	Hypothesis Testing and Statistical Analysis of Microbiome
Q36967865	Hypoxic survival requires a 2-on-2 hemoglobin in a process involving nitric oxide
Q38440482	IBTK Differently Modulates Gene Expression and RNA Splicing in HeLa and K562 Cells.
Q33741082	ICF-specific DNMT3B dysfunction interferes with intragenic regulation of mRNA transcription and alternative splicing.
Q98467304	IFN signaling and neutrophil degranulation transcriptional signatures are induced during SARS-CoV-2 infection
Q107547988	IFN signaling and neutrophil degranulation transcriptional signatures are induced during SARS-CoV-2 infection
Q57796330	IFNα Impairs Autophagic Degradation of mtDNA Promoting Autoreactivity of SLE Monocytes in a STING-Dependent Fashion
Q47270202	IGFBP3 deposited in the human umbilical cord mesenchymal stem cell-secreted extracellular matrix promotes bone formation.
Q47738030	IL-12 and IL-15 induce the expression of CXCR6 and CD49a on peripheral natural killer cells.
Q36111385	IL-31-Driven Skin Remodeling Involves Epidermal Cell Proliferation and Thickening That Lead to Impaired Skin-Barrier Function
Q54977679	ILDR2 has a negligible role in hepatic steatosis.
Q37641863	INsPeCT: INtegrative Platform for Cancer Transcriptomics.
Q38430822	IP6K1 Reduces Mesenchymal Stem/Stromal Cell Fitness and Potentiates High Fat Diet-Induced Skeletal Involution.
Q37469202	IRF5 governs liver macrophage activation that promotes hepatic fibrosis in mice and humans.
Q33564556	ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs
Q42410840	Id2a functions to limit Notch pathway activity and thereby influence the transition from proliferation to differentiation of retinoblasts during zebrafish retinogenesis
Q37509515	Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq
Q89620153	Identification and Comparative Analysis of Venom Proteins in a Pupal Ectoparasitoid, Pachycrepoideus vindemmiae
Q64087053	Identification and Expression Analysis of GRAS Transcription Factor Genes Involved in the Control of Arbuscular Mycorrhizal Development in Tomato
Q91893579	Identification and analysis of long non-coding RNA related miRNA sponge regulatory network in bladder urothelial carcinoma
Q54216684	Identification and application of exogenous dsRNA confers plant protection against Sclerotinia sclerotiorum and Botrytis cinerea.
Q60044854	Identification and characteristics of muscle growth-related microRNA in the Pacific abalone, Haliotis discus hannai
Q64075030	Identification and characterization of CircRNAs involved in the regulation of wheat root length
Q92231401	Identification and characterization of a novel anti-inflammatory lipid isolated from Mycobacterium vaccae, a soil-derived bacterium with immunoregulatory and stress resilience properties
Q89936300	Identification and characterization of alternative STK39 transcripts within human and mouse kidneys reveals species-specific regulation of blood pressure
Q58613518	Identification and characterization of circRNAs involved in the regulation of low nitrogen-promoted root growth in hexaploid wheat
Q42282404	Identification and characterization of differentially expressed miRNAs in subcutaneous adipose between Wagyu and Holstein cattle
Q90496455	Identification and characterization of jasmonic acid- and linolenic acid-mediated transcriptional regulation of secondary laticifer differentiation in Hevea brasiliensis
Q35655079	Identification and characterization of long non-coding RNAs involved in osmotic and salt stress in Medicago truncatula using genome-wide high-throughput sequencing
Q64901201	Identification and characterization of mRNAs and lncRNAs in the uterus of polytocous and monotocous Small Tail Han sheep (Ovis aries).
Q33577853	Identification and characterization of miRNAs in two closely related C4 and C3 species of Cleome by high-throughput sequencing
Q92552929	Identification and characterization of miRNAs involved in cold acclimation of zebrafish ZF4 cells
Q34186398	Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing
Q35984322	Identification and characterization of microRNAs in the white-backed planthopper, Sogatella furcifera
Q47381271	Identification and characterization of serotype-specific variation in group A Streptococcus pilus expression
Q39006130	Identification and comparison of long non-coding RNAs in the silk gland between domestic and wild silkworms
Q58747653	Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa
Q30489594	Identification and function annotation of long intervening noncoding RNAs
Q42271039	Identification and functional characterization of Rca1, a transcription factor involved in both antifungal susceptibility and host response in Candida albicans
Q42475984	Identification and genetic manipulation of human and mouse oesophageal stem cells
Q47155321	Identification and integrated analysis of differentially expressed lncRNAs and circRNAs reveal the potential ceRNA networks during PDLSC osteogenic differentiation.
Q90052571	Identification and manipulation of Neurospora crassa genes involved in sensitivity to furfural
Q90330814	Identification and profiling of microRNAs and differentially expressed genes during anther development between a genetic male-sterile mutant and its wildtype cotton via high-throughput RNA sequencing
Q35695322	Identification and transcriptomic profiling of genes involved in increasing sugar content during salt stress in sweet sorghum leaves
Q46988503	Identification and validation of potential prognostic gene biomarkers for predicting survival in patients with acute myeloid leukemia
Q40237532	Identification of 4438 novel lincRNAs involved in mouse pre-implantation embryonic development.
Q35579767	Identification of AGO3-associated miRNAs and computational prediction of their targets in the green alga Chlamydomonas reinhardtii
Q47411045	Identification of AHL- and BDSF-Controlled Proteins in Burkholderia cenocepacia by Proteomics.
Q58555643	Identification of Arbuscular Mycorrhiza Fungi Responsive microRNAs and Their Regulatory Network in Maize
Q42775500	Identification of Brassinosteroid Target Genes by Chromatin Immunoprecipitation Followed by High-Throughput Sequencing (ChIP-seq) and RNA-Sequencing.
Q35678726	Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis
Q35737577	Identification of Candidate Coral Pathogens on White Band Disease-Infected Staghorn Coral
Q36960982	Identification of Changes in Gene expression of rats after Sensory and Motor Nerves Injury.
Q42710918	Identification of Complete Repertoire of Apis florea Odorant Receptors Reveals Complex Orthologous Relationships with Apis mellifera.
Q97646274	Identification of Differentially Expressed Genes in Different Types of Broiler Skeletal Muscle Fibers Using the RNA-seq Technique
Q27307827	Identification of Differentially Expressed Genes in RNA-seq Data of Arabidopsis thaliana: A Compound Distribution Approach
Q28551196	Identification of Differentially Expressed microRNAs between the Fenpropathrin Resistant and Susceptible Strains in Tetranychus cinnabarinus
Q37126315	Identification of Drought Tolerant Mechanisms in Maize Seedlings Based on Transcriptome Analysis of Recombination Inbred Lines
Q90451430	Identification of F5 as a Prognostic Biomarker in Patients with Gastric Cancer
Q37486662	Identification of Flowering-Related Genes Responsible for Differences in Bolting Time between Two Radish Inbred Lines
Q27310317	Identification of Four Mouse Diabetes Candidate Genes Altering β-Cell Proliferation
Q35918335	Identification of Gene Modules Associated with Low Temperatures Response in Bambara Groundnut by Network-Based Analysis
Q35849561	Identification of General and Heart-Specific miRNAs in Sheep (Ovis aries)
Q64250883	Identification of Genes Involved in Low Temperature-Induced Senescence of Panicle Leaf in
Q36184173	Identification of Genes Putatively Involved in Chitin Metabolism and Insecticide Detoxification in the Rice Leaf Folder (Cnaphalocrocis medinalis) Larvae through Transcriptomic Analysis
Q91727108	Identification of Key Genes Involved in Embryo Development and Differential Oil Accumulation in Two Contrasting Maize Genotypes
Q90079642	Identification of Long Non-Coding RNAs and the Regulatory Network Responsive to Arbuscular Mycorrhizal Fungi Colonization in Maize Roots
Q58803615	Identification of MicroRNAs and Their Target Genes Associated with Ovarian Development in Black Tiger Shrimp (Penaeus monodon) Using High-Throughput Sequencing
Q36581556	Identification of Molecular Targets for Predicting Colon Adenocarcinoma.
Q28818580	Identification of NAD+ capped mRNAs in Saccharomyces cerevisiae
Q33807619	Identification of Nitrogen Consumption Genetic Variants in Yeast Through QTL Mapping and Bulk Segregant RNA-Seq Analyses.
Q37449703	Identification of Novel Equine (Equus caballus) Tendon Markers Using RNA Sequencing.
Q35729893	Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing
Q35778207	Identification of Ramie Genes in Response to Pratylenchus coffeae Infection Challenge by Digital Gene Expression Analysis.
Q35654027	Identification of Reprogrammed Myeloid Cell Transcriptomes in NSCLC
Q52723073	Identification of The Aberrantly Expressed LncRNAs in Hepatocellular Carcinoma: A Bioinformatics Analysis Based on RNA-sequencing.
Q38604257	Identification of Transcriptional Regulators of Psoriasis from RNA-Seq Experiments
Q33884499	Identification of a Sjögren's syndrome susceptibility locus at OAS1 that influences isoform switching, protein expression, and responsiveness to type I interferons
Q42061101	Identification of a Solanum pennellii Chromosome 4 Fruit Flavor and Nutritional Quality-Associated Metabolite QTL.
Q39051277	Identification of a U/Zn/Cu responsive global regulatory two-component system in Caulobacter crescentus.
Q37141382	Identification of a novel PPARβ/δ/miR-21-3p axis in UV-induced skin inflammation.
Q34338228	Identification of a p-coumarate degradation regulon in Rhodopseudomonas palustris by Xpression, an integrated tool for prokaryotic RNA-seq data processing
Q35643308	Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection
Q57472235	Identification of a strawberry NPR-like gene involved in negative regulation of the salicylic acid-mediated defense pathway
Q58599376	Identification of an Exceptionally Long Intron in the Gene of
Q49217033	Identification of cancer prognosis-associated functional modules using differential co-expression networks.
Q91063114	Identification of candidate ATP-binding cassette transporter gene family members in Diaphorina citri (Hemiptera: Psyllidae) via adult tissues transcriptome analysis
Q39632796	Identification of candidate domestication regions in the radish genome based on high-depth resequencing analysis of 17 genotypes
Q33358151	Identification of candidate genes for drought tolerance by whole-genome resequencing in maize
Q35994350	Identification of candidate genes for drought tolerance in coffee by high-throughput sequencing in the shoot apex of different Coffea arabica cultivars
Q36003683	Identification of candidate genes involved in wax deposition in Poa pratensis by RNA-seq
Q97681226	Identification of cell types from single cell data using stable clustering
Q36768298	Identification of chemicals that mimic transcriptional changes associated with autism, brain aging and neurodegeneration.
Q44354720	Identification of cold-responsive genes in a New Zealand alpine stick insect using RNA-Seq
Q34633472	Identification of cytokinin-responsive genes using microarray meta-analysis and RNA-Seq in Arabidopsis
Q33641078	Identification of differentially expressed Atlantic salmon miRNAs responding to salmonid alphavirus (SAV) infection.
Q41833057	Identification of differentially expressed genes during development of the zebrafish pineal complex using RNA sequencing.
Q47118868	Identification of differentially expressed genes in sunflower (Helianthus annuus) leaves and roots under drought stress by RNA sequencing
Q38429971	Identification of differentially expressed genes through RNA sequencing in goats (Capra hircus) at different postnatal stages.
Q33907521	Identification of differentially expressed miRNAs between white and black hair follicles by RNA-sequencing in the goat (Capra hircus).
Q37341793	Identification of differentially expressed microRNAs across the developing human brain
Q90702535	Identification of differentially expressed microRNAs in the skin of experimentally sensitized naturally affected atopic beagles by next-generation sequencing
Q34115434	Identification of discrete classes of small nucleolar RNA featuring different ends and RNA binding protein dependency
Q92989542	Identification of discriminatory antibiotic resistance genes among environmental resistomes using extremely randomized tree algorithm
Q33845740	Identification of factors required for m6 A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI.
Q38456773	Identification of functional networks associated with cell death in the retina of OXYS rats during the development of retinopathy.
Q30930149	Identification of functionally methylated regions based on discriminant analysis through integrating methylation and gene expression data
Q96127462	Identification of genetic loci associated with higher resistance to pancreas disease (PD) in Atlantic salmon (Salmo salar L.).
Q36304015	Identification of global regulators of T-helper cell lineage specification
Q58120223	Identification of key differentially expressed MicroRNAs in cancer patients through pan-cancer analysis
Q35160231	Identification of key factors regulating self-renewal and differentiation in EML hematopoietic precursor cells by RNA-sequencing analysis
Q104486494	Identification of key gene networks controlling organic acid and sugar metabolism during watermelon fruit development by integrating metabolic phenotypes and gene expression profiles
Q64058017	Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data
Q47737163	Identification of key genes in endometrioid endometrial adenocarcinoma via TCGA database
Q93140614	Identification of key pathways and genes in different types of chronic kidney disease based on WGCNA
Q38435311	Identification of key pathways and genes influencing prognosis in bladder urothelial carcinoma
Q92933022	Identification of lncRNAs associated with early-stage breast cancer and their prognostic implications
Q92810528	Identification of miRNAs Enriched in Extracellular Vesicles Derived from Serum Samples of Breast Cancer Patients
Q57071843	Identification of miRNAs and their targets in regulating tuberous root development in radish using small RNA and degradome analyses
Q35685498	Identification of miRNAs during mouse postnatal ovarian development and superovulation
Q35170636	Identification of microRNAs and their target genes in Alport syndrome using deep sequencing of iPSCs samples
Q28817228	Identification of misexpressed genetic elements in hybrids between Drosophila-related species
Q46870790	Identification of molecular markers in pectoral fin to predict artificial maturation of female European eels (Anguilla anguilla).
Q30392767	Identification of molecular signatures specific for distinct cranial sensory ganglia in the developing chick
Q89665131	Identification of nagilactone E as a protein synthesis inhibitor with anticancer activity
Q37371776	Identification of neoblast- and regeneration-specific miRNAs in the planarian Schmidtea mediterranea.
Q35716130	Identification of neurodegenerative factors using translatome-regulatory network analysis
Q37030876	Identification of new markers for the Schistosoma mansoni vitelline lineage
Q61807574	Identification of new regulators through transcriptome analysis that regulate anthocyanin biosynthesis in apple leaves at low temperatures
Q36185927	Identification of novel and differentially expressed MicroRNAs in goat enzootic nasal adenocarcinoma
Q31096031	Identification of novel direct targets of Drosophila Sine oculis and Eyes absent by integration of genome-wide data sets
Q35780999	Identification of novel small ncRNAs in pollen of tomato
Q35677838	Identification of novel vascular targets in lung cancer
Q98726947	Identification of olfactory genes of a forensically important blow fly, Aldrichina grahami (Diptera: Calliphoridae)
Q28596034	Identification of oncogenic driver mutations by genome-wide CRISPR-Cas9 dropout screening
Q49886755	Identification of piRNA Binding Sites Reveals the Argonaute Regulatory Landscape of the C. elegans Germline.
Q64063762	Identification of piRNAs and piRNA clusters in the testes of the Mongolian horse
Q90712204	Identification of potential prognostic long non-coding RNA for predicting survival in intrahepatic cholangiocarcinoma
Q93140000	Identification of prognosis-related alternative splicing events in kidney renal clear cell carcinoma
Q35070834	Identification of putative target genes of the transcription factor RUNX2.
Q41193780	Identification of recurrent regulated alternative splicing events across human solid tumors
Q30670502	Identification of sensory hair-cell transcripts by thiouracil-tagging in zebrafish
Q30697080	Identification of significant features in DNA microarray data
Q34549806	Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing
Q47562576	Identification of the Sex-Biased Gene Expression and Putative Sex-Associated Genes in Eucommia ulmoides Oliver Using Comparative Transcriptome Analyses
Q57475174	Identification of the Transcription Factor Relationships Associated with Androgen Deprivation Therapy Response and Metastatic Progression in Prostate Cancer
Q41908345	Identification of the alternative sigma factor SigX regulon and its implications for Pseudomonas aeruginosa pathogenicity
Q47101611	Identification of the direct regulon of NtcA during early acclimation to nitrogen starvation in the cyanobacterium Synechocystis sp. PCC 6803.
Q41539143	Identification of the miRNA targetome in hippocampal neurons using RIP-seq
Q37217381	Identification of the missing pluripotency mediator downstream of leukaemia inhibitory factor.
Q31132694	Identification of the novel candidate genes and variants in boar liver tissues with divergent skatole levels using RNA deep sequencing
Q34991371	Identification of the physiological gene targets of the essential lytic replicative Kaposi's sarcoma-associated herpesvirus ORF57 protein
Q35176549	Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network
Q57462062	Identification of therapeutic targets in chordoma through comprehensive genomic and transcriptomic analyses
Q33953586	Identification of tissue-enriched novel transcripts and novel exons in mice
Q89475616	Identification of transcribed protein coding sequence remnants within lincRNAs
Q87904878	Identification of transcripts potentially involved in neural tube closure using RNA sequencing
Q33839360	Identification of tubular injury microRNA biomarkers in urine: comparison of next-generation sequencing and qPCR-based profiling platforms
Q92628620	Identification of tumor suppressor miRNAs by integrative miRNA and mRNA sequencing of matched tumor-normal samples in lung adenocarcinoma
Q36831577	Identification of tumorigenic cells and therapeutic targets in pancreatic neuroendocrine tumors
Q91071277	Identification of two novel highly inducible promoters from Bacillus licheniformis by screening transcriptomic data
Q37058147	Identification of zinc finger protein Bcl6 as a novel regulator of early adipose commitment
Q47105288	Identify clear cell renal cell carcinoma related genes by gene network
Q92996884	Identify potential clinical significance of long noncoding RNA forkhead box P4 antisense RNA 1 in patients with early stage pancreatic ductal adenocarcinoma
Q64095953	Identifying High Confidence microRNAs in the Developing Seeds of Jatropha curcas
Q38383958	Identifying Novel Transcriptional Regulators with Circadian Expression
Q64073928	Identifying and exploiting gene-pathway interactions from RNA-seq data for binary phenotype
Q38249872	Identifying and mitigating bias in next-generation sequencing methods for chromatin biology
Q36367090	Identifying biologically relevant putative mechanisms in a given phenotype comparison
Q34259456	Identifying differentially expressed transcripts from RNA-seq data with biological variation
Q35536505	Identifying glioblastoma gene networks based on hypergeometric test analysis
Q31038202	Identifying network-based biomarkers of complex diseases from high-throughput data
Q30000290	Identifying stably expressed genes from multiple RNA-Seq data sets
Q33678796	Identifying the Genes Responsible for Iron-Limited Condition in Riemerella anatipestifer CH-1 through RNA-Seq-Based Analysis
Q50924260	Identity and dynamics of mammary stem cells during branching morphogenesis.
Q33691103	Illumina-based transcriptomic profiling of Panax notoginseng in response to arsenic stress
Q30803684	Image-based detection and targeting of therapy resistance in pancreatic adenocarcinoma
Q38300497	Immune quiescence of the brain is set by astroglial connexin 43.
Q34360686	Immune response of the Caribbean sea fan, Gorgonia ventalina, exposed to an Aplanochytrium parasite as revealed by transcriptome sequencing
Q99408679	Immunological Differences Between Immune-Rich Estrogen Receptor-Positive and Immune-Rich Triple-Negative Breast Cancers
Q34774780	Immunology of bats and their viruses: challenges and opportunities
Q38707767	Immunomodulators targeting MARCO expression improve resistance to postinfluenza bacterial pneumonia
Q55284654	Immunomodulatory Effects of Dietary Seaweeds in LPS Challenged Atlantic Salmon Salmo salar as Determined by Deep RNA Sequencing of the Head Kidney Transcriptome.
Q47867948	Immunomodulatory effect of CD200-positive human placenta-derived stem cells in the early phase of stroke
Q92511086	Immunomodulatory role of non-neuronal cholinergic signaling in myocardial injury
Q63547036	Immunophenotypes of pancreatic ductal adenocarcinoma: Meta‐analysis of transcriptional subtypes
Q30588562	Impact of Amorphous SiO2 Nanoparticles on a Living Organism: Morphological, Behavioral, and Molecular Biology Implications
Q61806523	Impact of CodY protein on metabolism, sporulation and virulence in Clostridioides difficile ribotype 027
Q35188712	Impact of Hfq on the Bacillus subtilis transcriptome
Q60303468	Impact of Individual Traits, Saturated Fat, and Protein Source on the Gut Microbiome
Q30276041	Impact of Low Dose Oral Exposure to Bisphenol A (BPA) on the Neonatal Rat Hypothalamic and Hippocampal Transcriptome: A CLARITY-BPA Consortium Study
Q100761924	Impact of RNA-seq data analysis algorithms on gene expression estimation and downstream prediction
Q35556468	Impact of a novel protein meal on the gastrointestinal microbiota and the host transcriptome of larval zebrafish Danio rerio
Q58698420	Impact of energy restriction during late gestation on the muscle and blood transcriptome of beef calves after preconditioning
Q37718264	Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides
Q30383865	Impact of germline and somatic missense variations on drug binding sites
Q36959192	Impact of the X Chromosome and sex on regulatory variation
Q39257719	Impacts of Early Life Stress on the Methylome and Transcriptome of Atlantic Salmon.
Q38403292	Impacts of temperature and lunar day on gene expression profiles during a monthly reproductive cycle in the brooding coral Pocillopora damicornis.
Q35751484	Impaired Cell Cycle Regulation in a Natural Equine Model of Asthma.
Q61445370	Impaired LXRα Phosphorylation Attenuates Progression of Fatty Liver Disease
Q29144918	Impaired TrkB receptor signaling underlies corticostriatal dysfunction in Huntington's disease
Q36835127	Impaired insulin/IGF1 signaling extends life span by promoting mitochondrial L-proline catabolism to induce a transient ROS signal
Q34076651	Impaired liver function in Xenopus tropicalis exposed to benzo[a]pyrene: transcriptomic and metabolic evidence
Q40060038	Impaired response of the bronchial epithelium to inflammation characterizes severe equine asthma
Q31133308	Implementation and Data Analysis of Tn-seq, Whole-Genome Resequencing, and Single-Molecule Real-Time Sequencing for Bacterial Genetics
Q35097508	Implication of sperm RNAs in transgenerational inheritance of the effects of early trauma in mice
Q46525358	Implication of the suberin pathway in adaptation to waterlogging and hypertrophied lenticels formation in pedunculate oak (Quercus robur L.).
Q35614628	Imprinted expression in cystic embryoid bodies shows an embryonic and not an extra-embryonic pattern
Q90429066	Improved detection of differentially represented DNA barcodes for high-throughput clonal phenomics
Q30942462	Improved integrative framework combining association data with gene expression features to prioritize Crohn's disease genes
Q34569594	Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information.
Q36020800	Improved survival with T cell clonotype stability after anti-CTLA-4 treatment in cancer patients
Q31141658	Improving Gene-Set Enrichment Analysis of RNA-Seq Data with Small Replicates
Q35863944	Improving RNA-Seq Precision with MapAl
Q33848556	Improving RNA-Seq expression estimates by correcting for fragment bias
Q30931084	Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization
Q90250259	Improving the efficiency of gene insertion in a human artificial chromosome vector and its transfer in human-induced pluripotent stem cells
Q90915313	Impulse model-based differential expression analysis of time course sequencing data
Q37260431	In Papyro Comparison of TMM (edgeR), RLE (DESeq2), and MRN Normalization Methods for a Simple Two-Conditions-Without-Replicates RNA-Seq Experimental Design
Q36928108	In Vitro and In Vivo Modulation of Alternative Splicing by the Biguanide Metformin
Q36132221	In Vivo Transcriptional Activation Using CRISPR/Cas9 in Drosophila
Q40230547	In planta Identification of Putative Pathogenicity Factors from the Chickpea Pathogen Ascochyta rabiei by De novo Transcriptome Sequencing Using RNA-Seq and Massive Analysis of cDNA Ends
Q35041007	In search of epigenetic marks in testes and sperm cells of differentially fed boars
Q41769723	In silico analysis of regulatory networks underlines the role of miR-10b-5p and its target BDNF in huntington's disease
Q35959005	In silico genome wide mining of conserved and novel miRNAs in the brain and pineal gland of Danio rerio using small RNA sequencing data
Q38870951	In silico lineage tracing through single cell transcriptomics identifies a neural stem cell population in planarians
Q60670850	In utero gene expression in the Slc39a8(neo/neo) knockdown mouse
Q34089469	In vitro generation of neuromesodermal progenitors reveals distinct roles for wnt signalling in the specification of spinal cord and paraxial mesoderm identity
Q90485522	In vitro human stem cell derived cultures to monitor calcium signaling in neuronal development and function
Q36736715	In vivo RNAi screens: concepts and applications
Q37217485	In vivo T-box transcription factor profiling reveals joint regulation of embryonic neuromesodermal bipotency
Q37655708	In vivo determination of direct targets of the nonsense-mediated decay pathway in Drosophila
Q34026223	In vivo mRNA profiling of uropathogenic Escherichia coli from diverse phylogroups reveals common and group-specific gene expression profiles
Q47103322	In vivo single cell analysis reveals Gata2 dynamics in cells transitioning to hematopoietic fate.
Q35545732	In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse.
Q47715988	In-depth resistome analysis by targeted metagenomics.
Q51678511	Inborn Error of Cobalamin Metabolism Associated with the Intracellular Accumulation of Transcobalamin-Bound Cobalamin and Mutations in ZNF143, Which Codes for a Transcriptional Activator.
Q36801814	Inbreeding Affects Gene Expression Differently in Two Self-Incompatible Arabidopsis lyrata Populations with Similar Levels of Inbreeding Depression
Q47111540	Incomplete MyoD-induced transdifferentiation is associated with chromatin remodeling deficiencies
Q40648502	Increase of Alternatively Activated Antigen Presenting Cells in Active Experimental Autoimmune Encephalomyelitis
Q38744308	Increased Expression of System xc- in Glioblastoma Confers an Altered Metabolic State and Temozolomide Resistance
Q46247203	Increased Expression of a MicroRNA Correlates with Anthelmintic Resistance in Parasitic Nematodes.
Q52607307	Increased RNA Editing May Provide a Source for Autoantigens in Systemic Lupus Erythematosus.
Q100693867	Increased RNA editing in maternal immune activation model of neurodevelopmental disease
Q59335306	Increased sporulation underpins adaptation of Clostridium difficile strain 630 to a biologically-relevant faecal environment, with implications for pathogenicity
Q33877077	Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing
Q58739312	Indel sensitive and comprehensive variant/mutation detection from RNA sequencing data for precision medicine
Q37025079	Independent and Parallel Evolution of New Genes by Gene Duplication in Two Origins of C4 Photosynthesis Provides New Insight into the Mechanism of Phloem Loading in C4 Species
Q57809322	Indirubin attenuates mouse psoriasis-like skin lesion in a CD274-dependent manner: an achievement of RNA sequencing
Q64054677	Individual differences in EPA and DHA content of Atlantic salmon are associated with gene expression of key metabolic processes
Q94521606	Individual differences in stereotypy and neuron subtype translatome with TrkB deletion
Q35109917	Individual letters of the RNA polymerase II CTD code govern distinct gene expression programs in fission yeast
Q59811917	Induced Long-Term Changes in the Upper Intestinal Microflora during the Chronic Stage of Infection
Q64950516	Induced androgenetic development in rainbow trout and transcriptome analysis of irradiated eggs.
Q28487083	Induced ectopic expression of HigB toxin in Mycobacterium tuberculosis results in growth inhibition, reduced abundance of a subset of mRNAs and cleavage of tmRNA
Q90713703	Inducible Antibacterial Activity in the Bacillales by Triphenyl Tetrazolium Chloride
Q37076274	Inducible DamID systems for genomic mapping of chromatin proteins in Drosophila
Q102211114	Inducible cell-specific mouse models for paired epigenetic and transcriptomic studies of microglia and astroglia
Q40945651	Inducible defenses stay up late: temporal patterns of immune gene expression in Tenebrio molitor
Q56892143	Induction and transcriptional regulation of the co-inhibitory gene module in T cells
Q91897873	Induction, identification and genetics analysis of tetraploid Actinidia chinensis
Q91835895	Infant microbiota in colic: predictive associations with problem crying and subsequent child behavior
Q46146623	Inference of RNA decay rate from transcriptional profiling highlights the regulatory programs of Alzheimer's disease
Q58553925	Inference of Significant Microbial Interactions From Longitudinal Metagenomics Data
Q27316733	Inferential considerations for low-count RNA-seq transcripts: a case study on the dominant prairie grass Andropogon gerardii
Q38720972	Inferring a role for methylation of intergenic DNA in the regulation of genes aberrantly expressed in precursor B-cell acute lymphoblastic leukemia
Q31107770	Inferring active regulatory networks from gene expression data using a combination of prior knowledge and enrichment analysis.
Q28481774	Inferring dynamic signatures of microbes in complex host ecosystems
Q30586688	Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data
Q36049303	Inferring the perturbation time from biological time course data.
Q57459871	Inferring the presence of aflatoxin-producing Aspergillus flavus strains using RNA sequencing and electronic probes as a transcriptomic screening tool
Q35101999	Inferring transcription factor collaborations in gene regulatory networks
Q38806146	Infiltration-RNAseq: transcriptome profiling of Agrobacterium-mediated infiltration of transcription factors to discover gene function and expression networks in plants
Q63560422	Inflammasome Signaling and Impaired Vascular Health in Psoriasis
Q91766280	Inflammation-Induced Alternative Pre-mRNA Splicing in Mouse Alveolar Macrophages
Q54283043	Inflammatory and immune response genes have significantly altered expression in schizophrenia.
Q92941835	Influence of Socio-Economic and Psychosocial Profiles on the Human Breast Milk Bacteriome of South African Women
Q37628773	Inheritance patterns and stability of DNA methylation variation in maize near-isogenic lines
Q89514576	Inhibition of IRF4 in dendritic cells by PRR-independent and -dependent signals inhibit Th2 and promote Th17 responses
Q28468631	Inhibition of RNA polymerase I transcription initiation by CX-5461 activates non-canonical ATM/ATR signaling
Q93082258	Inhibition of autotransporter biogenesis by small molecules
Q33766675	Inhibition of gelatinase B/MMP-9 does not attenuate colitis in murine models of inflammatory bowel disease
Q97524482	Inhibition of the RUNX1-CBFβ transcription factor complex compromises mammary epithelial cell identity: a phenotype potentially stabilized by mitotic gene bookmarking
Q36149368	Inhibition of β-catenin-TCF1 interaction delays differentiation of mouse embryonic stem cells
Q64255763	Inhibitory Effects of Berberine Hydrochloride on and the Underlying Mechanisms
Q37045273	Innate immune defects in HIV permissive cell lines.
Q28554929	Insecticidal Activity of Melaleuca alternifolia Essential Oil and RNA-Seq Analysis of Sitophilus zeamais Transcriptome in Response to Oil Fumigation
Q64072870	Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315
Q33787422	Insights from Global Analyses of Long Noncoding RNAs in Breast Cancer
Q35530043	Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum
Q40294338	Insights into Dynamic Polymicrobial Synergy Revealed by Time-Coursed RNA-Seq
Q24337152	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins
Q33675636	Insights into electrosensory organ development, physiology and evolution from a lateral line-enriched transcriptome
Q33871520	Insights into study design and statistical analyses in translational microbiome studies
Q36810332	Insights into the Mechanisms Underlying Ultraviolet-C Induced Resveratrol Metabolism in Grapevine (V. amurensis Rupr.) cv. "Tonghua-3"
Q46059074	Insights into the Prunus-Specific S-RNase-Based Self-Incompatibility System from a Genome-Wide Analysis of the Evolutionary Radiation of S Locus-Related F-box Genes
Q36159713	Insights into the adaptive response of Arabidopsis thaliana to prolonged thermal stress by ribosomal profiling and RNA-Seq
Q98943883	Insights into the resistance of a synthetically-derived wheat to Septoria tritici blotch disease: less is more
Q35811211	Insights into transcriptional changes that accompany organelle sequestration from the stolen nucleus of Mesodinium rubrum
Q40343456	Insulin-like signalling to the maternal germline controls progeny response to osmotic stress.
Q35814277	Integrated Analysis Reveals together miR-182, miR-200c and miR-221 Can Help in the Diagnosis of Prostate Cancer
Q89658811	Integrated Analysis of Transcriptomic and Metabolomic Data Reveals the Mechanism by Which LED Light Irradiation Extends the Postharvest Quality of Pak-choi (Brassica campestris L. ssp. chinensis (L.) Makino var. communis Tsen et Lee)
Q64095555	Integrated Analysis of miRNA and mRNA Expression Profiles in Spleen of Specific Pathogen-Free Chicken Infected with Avian Reticuloendotheliosis Virus Strain SNV
Q55371926	Integrated Characterization of MicroRNA and mRNA Transcriptome in Papillary Thyroid Carcinoma.
Q39654229	Integrated Network Analysis Reveals an Association between Plasma Mannose Levels and Insulin Resistance
Q37053265	Integrated OMICS guided engineering of biofuel butanol-tolerance in photosynthetic Synechocystis sp. PCC 6803.
Q58696780	Integrated Pharmacodynamic Analysis Identifies Two Metabolic Adaption Pathways to Metformin in Breast Cancer
Q35015781	Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
Q36285217	Integrated Regulatory and Metabolic Networks of the Marine Diatom Phaeodactylum tricornutum Predict the Response to Rising CO2 Levels
Q92403177	Integrated Whole Transcriptome Profiling and Bioinformatics Analysis for Revealing Regulatory Pathways Associated With Quercetin-Induced Apoptosis in HCT-116 Cells
Q35987044	Integrated analyses of copy number variations and gene differential expression in lung squamous-cell carcinoma
Q91756615	Integrated analysis of competing endogenous RNA network revealing potential prognostic biomarkers of hepatocellular carcinoma
Q56999072	Integrated analysis of dysregulated lncRNA expression in breast cancer cell identified by RNA-seq study
Q102210972	Integrated analysis of microRNA and mRNA expression profiles in Crassostrea gigas to reveal functional miRNA and miRNA-targets regulating shell pigmentation
Q34315034	Integrated analysis of microRNA expression and mRNA transcriptome in lungs of avian influenza virus infected broilers.
Q33837081	Integrated analysis of transcriptome and metabolites reveals an essential role of metabolic flux in starch accumulation under nitrogen starvation in duckweed
Q31140838	Integrated computational approach to the analysis of RNA-seq data reveals new transcriptional regulators of psoriasis.
Q30652590	Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data
Q38997289	Integrated exome and transcriptome sequencing reveals ZAK isoform usage in gastric cancer
Q90813165	Integrated exosomal miRNA and transcriptome analysis of brain microvascular endothelial cells in spontaneously hypertensive rats
Q49925504	Integrated genomic analysis identifies deregulated JAK/STAT-MYC-biosynthesis axis in aggressive NK-cell leukemia.
Q98665031	Integrated genomic analysis reveals mutated ELF3 as a potential gallbladder cancer vaccine candidate
Q48315182	Integrated genomic characterization of adrenocortical carcinoma.
Q34274467	Integrated genomic study of quadruple-WT GIST (KIT/PDGFRA/SDH/RAS pathway wild-type GIST).
Q37536415	Integrated in vivo genetic and pharmacologic screening identifies co-inhibition of EGRF and ROCK as a potential treatment regimen for triple-negative breast cancer
Q36244486	Integrated mRNA and microRNA analysis identifies genes and small miRNA molecules associated with transcriptional and post-transcriptional-level responses to both drought stress and re-watering treatment in tobacco
Q42680295	Integrated mRNA and microRNA transcriptome analyses reveal regulation of thermal acclimation in Gymnocypris przewalskii: A case study in Tibetan Schizothoracine fish.
Q37534984	Integrated mRNA and microRNA transcriptome sequencing characterizes sequence variants and mRNA-microRNA regulatory network in nasopharyngeal carcinoma model systems
Q36906583	Integrated metabolomic and transcriptome analyses reveal finishing forage affects metabolic pathways related to beef quality and animal welfare
Q97644789	Integrated metabolomic and transcriptomic profiling reveals the tissue-specific flavonoid compositions and their biosynthesis pathways in Ziziphora bungeana
Q90564655	Integrated miRNA and mRNA expression profiling to identify mRNA targets of dysregulated miRNAs in pulmonary tuberculosis
Q38475595	Integrated miRNA and mRNA transcriptomes of porcine alveolar macrophages (PAM cells) identifies strain-specific miRNA molecular signatures associated with H-PRRSV and N-PRRSV infection.
Q64271688	Integrated microRNA and transcriptome profiling reveals a miRNA-mediated regulatory network of embryo abortion under calcium deficiency in peanut (Arachis hypogaea L.)
Q35624614	Integrated microRNA, mRNA, and protein expression profiling reveals microRNA regulatory networks in rat kidney treated with a carcinogenic dose of aristolochic acid.
Q37428199	Integrated omics study of lipid droplets from Plasmodiophora brassicae
Q36246425	Integrated stress response is critical for gemcitabine resistance in pancreatic ductal adenocarcinoma
Q104486492	Integrated transcriptome and proteome analysis provides insight into chilling-induced dormancy breaking in Chimonanthus praecox
Q52721910	Integrated transcriptomes throughout swine oestrous cycle reveal dynamic changes in reproductive tissues interacting networks.
Q38764743	Integrated transcriptomic and metabolomic analysis reveals adaptive changes of hibernating retinas.
Q52584734	Integrated transcriptomic and proteomic analyses suggest the participation of endogenous protease inhibitors in the regulation of protease gene expression in Helicoverpa armigera.
Q61811366	Integrated transcriptomic and proteomic analysis of pathogenic mycobacteria and their esx-1 mutants reveal secretion-dependent regulation of ESX-1 substrates and WhiB6 as a transcriptional regulator
Q37445239	Integrated virus-host methylome analysis in head and neck squamous cell carcinoma.
Q47302653	Integrating 5hmC and gene expression data to infer regulatory mechanisms
Q28077579	Integrating Epigenomics into the Understanding of Biomedical Insight
Q59324427	Integrating Rio1 activities discloses its nutrient-activated network in Saccharomyces cerevisiae
Q41095329	Integrating genome and transcriptome profiling for elucidating the mechanism of muscle growth and lipid deposition in Pekin ducks
Q28661281	Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals
Q36117938	Integrating multiple molecular sources into a clinical risk prediction signature by extracting complementary information
Q30833359	Integrating transcriptional, metabolomic, and physiological responses to drought stress and recovery in switchgrass (Panicum virgatum L.).
Q30951561	Integrating transcriptome and genome re-sequencing data to identify key genes and mutations affecting chicken eggshell qualities
Q33804186	Integration of DNA methylation and gene transcription across nineteen cell types reveals cell type-specific and genomic region-dependent regulatory patterns.
Q38606162	Integration of Metabolomics and Transcriptomics Reveals a Complex Diet of Mycobacterium tuberculosis during Early Macrophage Infection
Q36113984	Integration of Next Generation Sequencing and EPR Analysis to Uncover Molecular Mechanism Underlying Shell Color Variation in Scallops
Q57034339	Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)
Q31111803	Integrative Analysis of Histone ChIP-seq and RNA-seq Data
Q35620383	Integrative Analysis of Normal Long Intergenic Non-Coding RNAs in Prostate Cancer
Q39030597	Integrative Comparison of mRNA Expression Patterns in Breast Cancers from Caucasian and Asian Americans with Implications for Precision Medicine
Q64102062	Integrative Differential Expression Analysis for Multiple EXperiments (IDEAMEX): A Web Server Tool for Integrated RNA-Seq Data Analysis
Q49922113	Integrative Genomic Analysis of Coincident Cancer Foci Implicates CTNNB1 and PTEN Alterations in Ductal Prostate Cancer.
Q91642680	Integrative In Silico and In Vitro Transcriptomics Analysis Revealed Gene Expression Changes and Oncogenic Features of Normal Cholangiocytes after Chronic Alcohol Exposure
Q33754735	Integrative RNA- and miRNA-Profile Analysis Reveals a Likely Role of BR and Auxin Signaling in Branch Angle Regulation of B. napus
Q30824606	Integrative RNA-seq and microarray data analysis reveals GC content and gene length biases in the psoriasis transcriptome
Q99238046	Integrative Transcriptomic and Small RNA Sequencing Reveals Immune-Related miRNA-mRNA Regulation Network for Soybean Meal-Induced Enteritis in Hybrid Grouper, Epinephelus fuscoguttatus♀ × Epinephelus lanceolatus♂
Q26823778	Integrative analyses of cancer data: a review from a statistical perspective
Q35899904	Integrative analyses of proteomics and RNA transcriptomics implicate mitochondrial processes, protein folding pathways and GWAS loci in Parkinson disease
Q41995142	Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques
Q58740817	Integrative analysis of differentially expressed genes and miRNAs predicts complex T3-mediated protective circuits in a rat model of cardiac ischemia reperfusion
Q28816965	Integrative analysis of miRNA and gene expression reveals regulatory networks in tamoxifen-resistant breast cancer
Q38743161	Integrative analysis of multiple genomic variables using a hierarchical Bayesian model
Q36000301	Integrative analysis of the Trypanosoma brucei gene expression cascade predicts differential regulation of mRNA processing and unusual control of ribosomal protein expression
Q38831509	Integrative analysis unveils new functions for the Drosophila Cutoff protein in noncoding RNA biogenesis and gene regulation
Q33945848	Integrative genomic and transcriptomic analysis identified candidate genes implicated in the pathogenesis of hepatosplenic T-cell lymphoma
Q57263190	Integrative landscape of dysregulated signaling pathways of clinically distinct pancreatic cancer subtypes
Q52607475	Integrative multi-platform meta-analysis of gene expression profiles in pancreatic ductal adenocarcinoma patients for identifying novel diagnostic biomarkers.
Q112298576	Integrative multiomics analysis of Premolis semirufa caterpillar venom in the search for molecules leading to a joint disease
Q42210576	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses
Q46624525	Interaction between lithification and resource availability in the microbialites of Río Mesquites, Cuatro Ciénegas, México
Q35842267	Interaction of Arabidopsis Trihelix-Domain Transcription Factors VFP3 and VFP5 with Agrobacterium Virulence Protein VirF.
Q91941391	Interaction of Sox2 with RNA binding proteins in mouse embryonic stem cells
Q89802262	Interaction of field realistic doses of clothianidin and Varroa destructor parasitism on adult honey bee (Apis mellifera L.) health and neural gene expression, and antagonistic effects on differentially expressed genes
Q36279479	Interactions between closely related bacterial strains are revealed by deep transcriptome sequencing
Q39977166	Interactions between horizontally acquired genes create a fitness cost in Pseudomonas aeruginosa
Q35684951	Interactions between multiple helminths and the gut microbiota in wild rodents
Q33820852	Interactions with RNA direct the Polycomb group protein SCML2 to chromatin where it represses target genes
Q97518423	Interactive Gene Expression Patterns of Susceptible and Resistant Lens ervoides Recombinant Inbred Lines and the Necrotroph Ascochyta lentis
Q92986765	Interactive Visualization of Hierarchically Structured Data
Q98613737	Interactome of miRNAs and transcriptome of human umbilical cord endothelial cells exposed to short-term simulated microgravity
Q99607995	Intergenerational Pathogen-Induced Diapause in Caenorhabditis elegans Is Modulated by mir-243
Q28385082	Interleukin-27 treated human macrophages induce the expression of novel microRNAs which may mediate anti-viral properties
Q43151067	Interplay among Drosophila transcription factors Ets21c, Fos and Ftz-F1 drives JNK-mediated tumor malignancy
Q37385787	Interplay between RNA interference and heat shock response systems in Drosophila melanogaster.
Q47290490	Interplay between the catabolite repression control protein Crc, Hfq and RNA in Hfq-dependent translational regulation in Pseudomonas aeruginosa
Q42645962	Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution.
Q92064310	Interpretation of 'Omics dynamics in a single subject using local estimates of dispersion between two transcriptomes
Q89169915	Interrogation of nonconserved human adipose lincRNAs identifies a regulatory role of linc-ADAL in adipocyte metabolism
Q34514009	Interruption of KLF5 acetylation converts its function from tumor suppressor to tumor promoter in prostate cancer cells
Q36572940	Intersection of population variation and autoimmunity genetics in human T cell activation
Q34543996	Interspecific and host-related gene expression patterns in nematode-trapping fungi
Q95660615	Intestinal fungi are causally implicated in microbiome assembly and immune development in mice
Q41692208	Into the Wild: Parallel Transcriptomics of the Tsetse-Wigglesworthia Mutualism within Kenyan Populations
Q39897181	Intracellular Action of a Secreted Peptide Required for Fungal Virulence
Q35949797	Intracellular Ca(2+) and K(+) concentration in Brassica oleracea leaf induces differential expression of transporter and stress-related genes
Q55347255	Intraflagellar transport 46 (IFT46) is essential for trafficking IFT proteins between cilia and cytoplasm in Paramecium.
Q52324550	Intragenic transcriptional interference regulates the human immune ligand MICA.
Q27318089	Intrahepatic Transcriptional Signature Associated with Response to Interferon-α Treatment in the Woodchuck Model of Chronic Hepatitis B
Q46859497	Intraspecific Arabidopsis hybrids show different patterns of heterosis despite the close relatedness of the parental genomes.
Q58215000	Intratumor MAPK and PI3K signaling pathway heterogeneity in glioblastoma tissue correlates with CREB signaling and distinct target gene signatures
Q37054695	Intrauterine calorie restriction affects placental DNA methylation and gene expression
Q35090071	Intrinsic biocontainment: multiplex genome safeguards combine transcriptional and recombinational control of essential yeast genes
Q38243630	Introduction to RNA-Seq and its applications to drug discovery and development
Q28602436	Introgression of Neandertal- and Denisovan-like Haplotypes Contributes to Adaptive Variation in Human Toll-like Receptors
Q37220077	Intron retention-dependent gene regulation in Cryptococcus neoformans
Q35575895	Invasive dreissenid mussels and benthic algae in Lake Michigan: characterizing effects on sediment bacterial communities
Q35914012	Inverse relationship between microRNA-155 and -184 expression with increasing conjunctival inflammation during ocular Chlamydia trachomatis infection
Q94479633	Investigating the effect of dependence between conditions with Bayesian Linear Mixed Models for motif activity analysis
Q96964068	Investigating the gene expression profiles of rehabilitated Florida manatees (Trichechus manatus latirostris) following red tide exposure
Q42910925	Investigating the physiological response of Pichia (Komagataella) pastoris GS115 to the heterologous expression of misfolded proteins using chemostat cultures
Q36068075	Investigation into Host Selection of the Cecal Acetogen Population in Rabbits after Weaning
Q55664546	Investigation of Citrinin and Pigment Biosynthesis Mechanisms in Monascus purpureus by Transcriptomic Analysis.
Q48740131	Involvement of GATOR complex genes in familial focal epilepsies and focal cortical dysplasia.
Q54221793	Involvement of Pro-Inflammatory Macrophages in Liver Pathology of Pirital Virus-Infected Syrian Hamsters.
Q92162847	Involvement of Salicylic Acid in Anthracnose Infection in Tea Plants Revealed by Transcriptome Profiling
Q91869848	Iron Hack - A symposium/hackathon focused on porphyrias, Friedreich's ataxia, and other rare iron-related diseases
Q93013156	Iron competition triggers antibiotic biosynthesis in Streptomyces coelicolor during coculture with Myxococcus xanthus
Q58765452	Iron restriction inside macrophages regulates pulmonary host defense against Rhizopus species
Q46218853	Isl1 Controls Patterning and Mineralization of Enamel in the Continuously Renewing Mouse Incisor
Q36326732	IsoDOT Detects Differential RNA-isoform Expression/Usage with respect to a Categorical or Continuous Covariate with High Sensitivity and Specificity
Q34761600	IsoSCM: improved and alternative 3' UTR annotation using multiple change-point inference
Q36810277	Isoform switching and exon skipping induced by the DNA methylation inhibitor 5-Aza-2'-deoxycytidine
Q55409647	Isolation of Low-Abundant Bacteroidales in the Human Intestine and the Analysis of Their Differential Utilization Based on Plant-Derived Polysaccharides.
Q55312819	Isolation of a natural DNA virus of Drosophila melanogaster, and characterisation of host resistance and immune responses.
Q34439117	IsomiR expression profiles in human lymphoblastoid cell lines exhibit population and gender dependencies
Q55421215	Itraconazole targets cell cycle heterogeneity in colorectal cancer.
Q24701735	Ixodes scapularis and Ixodes ricinus tick cell lines respond to infection with tick-borne encephalitis virus: transcriptomic and proteomic analysis
Q92237121	JCDB: a comprehensive knowledge base for Jatropha curcas, an emerging model for woody energy plants
Q36019733	JNK-dependent gene regulatory circuitry governs mesenchymal fate
Q57550895	Jmy regulates oligodendrocyte differentiation via modulation of actin cytoskeleton dynamics
Q48444711	John Storey by Mak H Craig.
Q35741355	Joint MiRNA/mRNA expression profiling reveals changes consistent with development of dysfunctional corpus luteum after weight gain.
Q92455076	Joint RNA-Seq and miRNA Profiling Analyses to Reveal Molecular Mechanisms in Regulating Thickness of Pod Canopy in Brassica napus
Q34678299	Joint analysis of differential gene expression in multiple studies using correlation motifs
Q91577979	Joint between-sample normalization and differential expression detection through ℓ0-regularized regression
Q34394631	Juvenile hormone-receptor complex acts on mcm4 and mcm7 to promote polyploidy and vitellogenesis in the migratory locust.
Q34332494	K-Lysine acetyltransferase 2a regulates a hippocampal gene expression network linked to memory formation
Q41084396	KDM2B, an H3K36-specific demethylase, regulates apoptotic response of GBM cells to TRAIL.
Q93025043	KLF4 as a rheostat of osteolysis and osteogenesis in prostate tumors in the bone
Q63965923	KLF4, A Gene Regulating Prostate Stem Cell Homeostasis, Is a Barrier to Malignant Progression and Predictor of Good Prognosis in Prostate Cancer
Q34544971	KRAS driven expression signature has prognostic power superior to mutation status in non-small cell lung cancer
Q28646719	KRAS-dependent sorting of miRNA to exosomes
Q58599645	Kauniolide synthase is a P450 with unusual hydroxylation and cyclization-elimination activity
Q90591938	Kcnn2 blockade reverses learning deficits in a mouse model of fetal alcohol spectrum disorders
Q39755467	Kctd10 regulates heart morphogenesis by repressing the transcriptional activity of Tbx5a in zebrafish
Q64098551	Key Maize Drought-Responsive Genes and Pathways Revealed by Comparative Transcriptome and Physiological Analyses of Contrasting Inbred Lines
Q35045335	Keys for microRNA expression profiling of single rat hypothalamic nuclei and multiplex sequencing strategies
Q98613218	Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics
Q51154177	Kiwifruit SVP2 gene prevents premature budbreak during dormancy.
Q89794499	Knock down of GmVQ58 encoding a VQ motif-containing protein enhances soybean resistance to the common cutworm (Spodoptera litura Fabricius)
Q42107396	Knockout of extracytoplasmic function sigma factor ECF-10 affects stress resistance and biofilm formation in Pseudomonas putida KT2440.
Q30882831	LFCseq: a nonparametric approach for differential expression analysis of RNA-seq data
Q47863548	LMO1 Synergizes with MYCN to Promote Neuroblastoma Initiation and Metastasis
Q89603949	LOC646329 long non-coding RNA sponges miR-29b-1 and regulates TGFβ signaling in colorectal cancer
Q36105670	LPEseq: Local-Pooled-Error Test for RNA Sequencing Experiments with a Small Number of Replicates
Q42971580	LSD1 controls metastasis of androgen-independent prostate cancer cells through PXN and LPAR6.
Q36392476	LSD1 is essential for oocyte meiotic progression by regulating CDC25B expression in mice
Q42735431	LSD1 promotes oxidative metabolism of white adipose tissue
Q92358768	LTMG: a novel statistical modeling of transcriptional expression states in single-cell RNA-Seq data
Q28654591	LTR retroelements are intrinsic components of transcriptional networks in frogs
Q92666896	LUX ARRHYTHMO mediates crosstalk between the circadian clock and defense in Arabidopsis
Q42061133	LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq
Q51556805	Laboratory evolution reveals regulatory and metabolic trade-offs of glycerol utilization in Saccharomyces cerevisiae.
Q36355055	Lack of miRNA Misregulation at Early Pathological Stages in Drosophila Neurodegenerative Disease Models.
Q35368576	Lactobacillus ruminis strains cluster according to their mammalian gut source.
Q37723648	Laminar and temporal expression dynamics of coding and noncoding RNAs in the mouse neocortex
Q52678246	Landscape of the spliced leader trans-splicing mechanism in Schistosoma mansoni.
Q37589911	Lanthanide-dependent cross-feeding of methane-derived carbon is linked by microbial community interactions.
Q58241621	Large differences in potential denitrification and sediment microbial communities across the Laurentian great lakes
Q30663449	Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data
Q40622697	Large-scale RNA-Seq Transcriptome Analysis of 4043 Cancers and 548 Normal Tissue Controls across 12 TCGA Cancer Types.
Q31144565	Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies.
Q64086525	Large-scale in-silico identification of a tumor-specific antigen pool for targeted immunotherapy in triple-negative breast cancer
Q52660779	Large-scale profiling of noncoding RNA function in yeast.
Q36905073	Large-scale sequence and structural comparisons of human naive and antigen-experienced antibody repertoires
Q35774955	Large-scale transcriptional profiling of lignified tissues in Tectona grandis
Q28817801	Large-scale transcriptome comparison of sunflower genes responsive to Verticillium dahliae
Q34363060	Large-scale transcriptome comparison reveals distinct gene activations in wheat responding to stripe rust and powdery mildew.
Q36322030	Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish.
Q35965391	Larval growth rate is associated with the composition of the gut microbiota in the Glanville fritillary butterfly
Q35567361	Laser capture microdissection in Ectocarpus siliculosus: the pathway to cell-specific transcriptomics in brown algae
Q37237755	Laterally Transferred Gene Recruited as a Venom in Parasitoid Wasps
Q36292131	Leaf transcriptome analysis of a subtropical evergreen broadleaf plant, wild oil-tea camellia (Camellia oleifera), revealing candidate genes for cold acclimation
Q37236620	Leaf-galling phylloxera on grapes reprograms host metabolism and morphology
Q30841748	Lean Big Data integration in systems biology and systems pharmacology
Q36308235	Learning gene regulatory networks from next generation sequencing data
Q33798902	Length bias correction for RNA-seq data in gene set analyses
Q34441154	Length bias correction in gene ontology enrichment analysis using logistic regression
Q28265954	Leucine metabolism regulates TRI6 expression and affects deoxynivalenol production and virulence in Fusarium graminearum
Q62751529	Leveraging Big Data to Transform Drug Discovery
Q36181259	Leveraging genetically simple traits to identify small-effect variants for complex phenotypes.
Q30573417	Library preparation and data analysis packages for rapid genome sequencing
Q47823494	Ligand-mediated cytoplasmic retention of the Ah receptor inhibits macrophage-mediated acute inflammatory responses.
Q42578968	Light Modulates Metabolic Pathways and Other Novel Physiological Traits in the Human Pathogen Acinetobacter baumannii
Q47113381	Lineage specification of human dendritic cells is marked by IRF8 expression in hematopoietic stem cells and multipotent progenitors.
Q28547060	Lineage-Specific Changes in Biomarkers in Great Apes and Humans
Q36275655	Lineage-Specific Profiling Delineates the Emergence and Progression of Naive Pluripotency in Mammalian Embryogenesis
Q46916373	Lineage-specific transcriptional profiles of Symbiodinium spp. unaltered by heat stress in a coral host
Q96953647	Linkage Mapping and Comparative Transcriptome Analysis of Firmness in Watermelon (Citrullus lanatus)
Q57106289	Linking prostate cancer cell AR heterogeneity to distinct castration and enzalutamide responses
Q41808347	Linking system-wide impacts of RNA polymerase mutations to the fitness cost of rifampin resistance in Pseudomonas aeruginosa
Q38941605	Lipidomic Evaluation of Aryl Hydrocarbon Receptor-Mediated Hepatic Steatosis in Male and Female Mice Elicited by 2,3,7,8-Tetrachlorodibenzo-p-dioxin.
Q37700149	Listeriomics: an Interactive Web Platform for Systems Biology of Listeria
Q34439268	Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition
Q27305003	Local false discovery rate estimation using feature reliability in LC/MS metabolomics data
Q40088946	Local sequence and sequencing depth dependent accuracy of RNA-seq reads
Q34369340	Locus-specific editing of histone modifications at endogenous enhancers
Q49213554	Long non-coding RNA GAS5 and ZFAS1 are prognostic markers involved in translation targeted by miR-940 in prostate cancer.
Q36545494	Long non-coding RNA profiling links subgroup classification of endometrioid endometrial carcinomas with trithorax and polycomb complex aberrations.
Q36299932	Long non-coding RNA profiling of human lymphoid progenitor cells reveals transcriptional divergence of B cell and T cell lineages
Q33770661	Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes
Q36446804	Long non-coding RNAs in innate and adaptive immunity
Q35145374	Long noncoding RNA EWSAT1-mediated gene repression facilitates Ewing sarcoma oncogenesis
Q64119706	Long noncoding RNA and mRNA profiling in cetuximab-resistant colorectal cancer cells by RNA sequencing analysis
Q50589433	Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypium spp.).
Q36005012	Long-Range Chromosome Interactions Mediated by Cohesin Shape Circadian Gene Expression.
Q46784241	Long-Term Balancing Selection in LAD1 Maintains a Missense Trans-Species Polymorphism in Humans, Chimpanzees, and Bonobos
Q37746837	Long-Term Enrichment of Stress-Tolerant Cellulolytic Soil Populations following Timber Harvesting Evidenced by Multi-Omic Stable Isotope Probing
Q55404612	Long-Term Irrigation Affects the Dynamics and Activity of the Wheat Rhizosphere Microbiome.
Q35035694	Long-lasting changes in DNA methylation following short-term hypoxic exposure in primary hippocampal neuronal cultures
Q39186926	Long-range enhancers regulating Myc expression are required for normal facial morphogenesis
Q28658104	Long-term exposure to low-concentrations of Cr(VI) induce DNA damage and disrupt the transcriptional response to benzo[a]pyrene
Q30395296	Long-term neural and physiological phenotyping of a single human
Q34757728	Long-term quiescent fibroblast cells transit into senescence
Q55290300	Long-term reduction in hyperglycemia in advanced type 1 diabetes: the value of induced aerobic glycolysis with BCG vaccinations.
Q52689591	Longitudinal Analyses of Blood Transcriptome During Conversion to Psychosis.
Q90261652	Longitudinal RNA-Seq analysis of acute and chronic neurogenic skeletal muscle atrophy
Q35689999	Longitudinal analysis of peripheral blood T cell receptor diversity in patients with systemic lupus erythematosus by next-generation sequencing
Q93012197	Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells
Q92383029	Longitudinal multi-omics of host-microbe dynamics in prediabetes
Q36244619	Looking beyond the brain to improve the pathogenic understanding of Parkinson's disease: implications of whole transcriptome profiling of Patients' skin.
Q41175540	Loss of Activin Receptor Type 1B Accelerates Development of Intraductal Papillary Mucinous Neoplasms in Mice With Activated KRAS.
Q92325664	Loss of DUX causes minor defects in zygotic genome activation and is compatible with mouse development
Q30367333	Loss of MeCP2 in the rat models regression, impaired sociability and transcriptional deficits of Rett syndrome.
Q37413074	Loss of PPARγ in endothelial cells leads to impaired angiogenesis
Q64060975	Loss of atrx cooperates with p53-deficiency to promote the development of sarcomas and other malignancies
Q34647860	Loss of beta2-integrin-mediated cytoskeletal linkage reprogrammes dendritic cells to a mature migratory phenotype.
Q91650811	Loss of function mutation of Eftud2, the gene responsible for mandibulofacial dysostosis with microcephaly (MFDM), leads to pre-implantation arrest in mouse
Q91142954	Loss of function of NCOR1 and NCOR2 impairs memory through a novel GABAergic hypothalamus-CA3 projection
Q36344078	Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells
Q41702575	Loss of liver-specific and sexually dimorphic gene expression by aryl hydrocarbon receptor activation in C57BL/6 mice
Q33814282	Loss of the multifunctional RNA-binding protein RBM47 as a source of selectable metastatic traits in breast cancer.
Q36371528	Loss of the nodule-specific cysteine rich peptide, NCR169, abolishes symbiotic nitrogen fixation in the Medicago truncatula dnf7 mutant
Q90589718	Loss of the nuclear Wnt pathway effector TCF7L2 promotes migration and invasion of human colorectal cancer cells
Q33994806	Loss of transcriptional control over endogenous retroelements during reprogramming to pluripotency
Q42775568	Loss-of-function mutation of the calcium sensor CBL1 increases aluminum sensitivity in Arabidopsis.
Q35596369	Low MITF/AXL ratio predicts early resistance to multiple targeted drugs in melanoma
Q37693341	Low utility of Oncotype DX® in the clinic.
Q50426370	Low-dose rapamycin extends lifespan in a mouse model of mtDNA depletion syndrome.
Q36772092	Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer
Q90656257	Lung transcriptional unresponsiveness and loss of early influenza virus control in infected neonates is prevented by intranasal Lactobacillus rhamnosus GG
Q101564160	Lung transcriptome of a COVID-19 patient and systems biology predictions suggest impaired surfactant production which may be druggable by surfactant therapy
Q92978261	Lymphatic endothelial cells prime naïve CD8+ T cells into memory cells under steady-state conditions
Q92157304	M3S: a comprehensive model selection for multi-modal single-cell RNA sequencing data
Q38397341	MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure
Q38932131	MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens
Q64053386	MALAT1 regulates the transcriptional and translational levels of proto-oncogene RUNX2 in colorectal cancer metastasis
Q34337857	MALDIquant: a versatile R package for the analysis of mass spectrometry data
Q34494158	MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing
Q42772622	MAPK cascade-mediated regulation of pathogenicity, conidiation and tolerance to abiotic stresses in the entomopathogenic fungus Metarhizium robertsii
Q30277014	MAPK/ERK2 phosphorylates ERG at serine 283 in leukemic cells and promotes stem cell signatures and cell proliferation.
Q40794789	MARINE SULFUR CYCLE. Identification of the algal dimethyl sulfide-releasing enzyme: A missing link in the marine sulfur cycle
Q35110660	MARIS: method for analyzing RNA following intracellular sorting
Q31031428	MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
Q61810924	MB2003 Competes Effectively for Soluble Sugars Released by B316 during Growth on Xylan or Pectin
Q36111470	MBDDiff: an R package designed specifically for processing MBDcap-seq datasets
Q30607845	MCMC implementation of the optimal Bayesian classifier for non-Gaussian models: model-based RNA-Seq classification
Q39642515	MDM2 facilitates adipocyte differentiation through CRTC-mediated activation of STAT3
Q45119850	MED18 interaction with distinct transcription factors regulates multiple plant functions.
Q37031859	MEF2B mutations in non-Hodgkin lymphoma dysregulate cell migration by decreasing MEF2B target gene activation
Q30370553	MEF2C regulates cortical inhibitory and excitatory synapses and behaviors relevant to neurodevelopmental disorders.
Q37575633	META2: Intercellular DNA Methylation Pairwise Annotation and Integrative Analysis
Q91754635	MIG1 as a positive regulator for the histidine biosynthesis pathway and as a global regulator in thermotolerant yeast Kluyveromyces marxianus
Q36103110	MINCR is a MYC-induced lncRNA able to modulate MYC's transcriptional network in Burkitt lymphoma cells
Q34974745	MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
Q90062871	MIXnorm: Normalizing RNA-seq Data from Formalin-Fixed Paraffin-Embedded Samples
Q60916492	MIYAIRI 588 Increases the Lifespan and Multiple-Stress Resistance of
Q36618536	MLL-AF9- and HOXA9-mediated acute myeloid leukemia stem cell self-renewal requires JMJD1C.
Q39487708	MMAPPR: mutation mapping analysis pipeline for pooled RNA-seq
Q30699803	MMDiff: quantitative testing for shape changes in ChIP-Seq data sets
Q33764215	MOF-associated complexes ensure stem cell identity and Xist repression.
Q33362806	MOL1 is required for cambium homeostasis in Arabidopsis
Q28587396	MORC1 represses transposable elements in the mouse male germline
Q36611010	MSI2 is required for maintaining activated myelodysplastic syndrome stem cells
Q41763543	MTG16 is a tumor suppressor in colitis-associated carcinoma.
Q47725262	MTide: an integrated tool for the identification of miRNA-target interaction in plants
Q35745717	MUCOSAL IMMUNOLOGY. Individual intestinal symbionts induce a distinct population of RORγ⁺ regulatory T cells.
Q33361502	MYB36 regulates the transition from proliferation to differentiation in the Arabidopsis root
Q90314504	Machine Learning of Single-Cell Transcriptome Highly Identifies mRNA Signature by Comparing F-Score Selection with DGE Analysis
Q64098276	Machine learning applied to transcriptomic data to identify genes associated with feed efficiency in pigs
Q34458110	MacroH2A1.1 and PARP-1 cooperate to regulate transcription by promoting CBP-mediated H2B acetylation
Q41370213	Maintenance of leukemic cell identity by the activity of the Polycomb complex PRC1 in mice.
Q37547338	Maize Cytolines Unmask Key Nuclear Genes That Are under the Control of Retrograde Signaling Pathways in Plants.
Q54963524	Maize Stem Response to Long-Term Attack by Sesamia nonagrioides.
Q40562072	Maize susceptibility to Ustilago maydis is influenced by genetic and chemical perturbation of carbohydrate allocation
Q88561435	Making Epidermal Bladder Cells Bigger: Developmental- and Salinity-Induced Endopolyploidy in a Model Halophyte
Q37049456	Male-specific region of the bovine Y chromosome is gene rich with a high transcriptomic activity in testis development
Q37546911	Mammary-specific gene activation is defined by progressive recruitment of STAT5 during pregnancy and the establishment of H3K4me3 marks
Q33795295	Mapping and Characterization of the fefe Gene That Controls Iron Uptake in Melon (Cucumis melo L.).
Q39555698	Mapping gene regulatory circuitry of Pax6 during neurogenesis.
Q91330124	Mapping microglia states in the human brain through the integration of high-dimensional techniques
Q37270749	Mapping of genotype-phenotype diversity among clinical isolates of mycobacterium tuberculosis by sequence-based transcriptional profiling
Q34448456	Marek's disease virus infection induces widespread differential chromatin marks in inbred chicken lines
Q58792303	Marked disparity of microRNA modulation by cGMP-selective PDE5 versus PDE9 inhibitors in heart disease
Q34961949	Masculinization of gene expression is associated with exaggeration of male sexual dimorphism
Q34945671	Masculinization of the x chromosome in the pea aphid
Q37036789	Massive activation of archaeal defense genes during viral infection
Q37591528	Massive analysis of cDNA Ends (MACE) and miRNA expression profiling identifies proatherogenic pathways in chronic kidney disease
Q36963324	Massive functional mapping of a 5'-UTR by saturation mutagenesis, phenotypic sorting and deep sequencing.
Q41565565	Massive transcriptome sequencing of human spinal cord tissues provides new insights into motor neuron degeneration in ALS
Q33886396	Massive-scale RNA-Seq analysis of non ribosomal transcriptome in human trisomy 21.
Q52689899	Mast cells regulate CD4+ T-cell differentiation in the absence of antigen presentation.
Q36264967	Master Regulators of Oncogenic KRAS Response in Pancreatic Cancer: An Integrative Network Biology Analysis
Q46028248	Master regulators in primary skin fibroblast fate reprogramming in a human ex vivo model of chronic wounds.
Q36510078	Maternal DNA Methylation Regulates Early Trophoblast Development
Q48516898	Maternal H3K27me3 controls DNA methylation-independent imprinting.
Q28272845	Maternal LSD1/KDM1A is an essential regulator of chromatin and transcription landscapes during zygotic genome activation
Q33711072	Maternal bias and escape from X chromosome imprinting in the midgestation mouse placenta
Q30450093	Maternal immune activation alters behavior in adult offspring, with subtle changes in the cortical transcriptome and epigenome
Q63406163	Maternal knockout causes loss of H3K27me3 imprinting and random X inactivation in the extraembryonic cells
Q34993600	Maternal nutrition induces gene expression changes in fetal muscle and adipose tissues in sheep
Q30453556	Maternal separation with early weaning: a rodent model providing novel insights into neglect associated developmental deficits
Q36283636	Maternal smoke exposure decreases mesenchymal proliferation and modulates Rho-GTPase-dependent actin cytoskeletal signaling in fetal lungs
Q51263529	Maternal stress has divergent effects on gene expression patterns in the brains of male and female threespine stickleback.
Q38604285	Mathematical Justification of Expression-Based Pathway Activation Scoring (PAS).
Q34033181	Mating of the stichotrichous ciliate Oxytricha trifallax induces production of a class of 27 nt small RNAs derived from the parental macronucleus
Q92290037	Matrisome-Associated Gene Expression Patterns Correlating with TIMP2 in Cancer
Q47215526	Maturation of hematopoietic stem cells from prehematopoietic stem cells is accompanied by up-regulation of PD-L1.
Q61448759	Maturing Human CD127+ CCR7+ PDL1+ Dendritic Cells Express AIRE in the Absence of Tissue Restricted Antigens
Q91691095	Maximal information coefficient applied to differentially expressed genes identification: A feasibility study
Q89559160	MdMYB8 is associated with flavonol biosynthesis via the activation of the MdFLS promoter in the fruits of Malus crabapple
Q40680118	MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system.
Q97650823	MeCP2 links heterochromatin condensates and neurodevelopmental disease
Q35129397	MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis
Q61940376	Measurement, Summary, and Methodological Variation in RNA-sequencing
Q30853974	Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis
Q42726872	Measuring mRNA Levels Over Time During the Yeast S. cerevisiae Hypoxic Response.
Q89603419	Measuring significant changes in chromatin conformation with ACCOST
Q40009306	Measuring the spatial correlations of protein binding sites
Q33581205	Mechanical Strain Promotes Oligodendrocyte Differentiation by Global Changes of Gene Expression
Q37172322	Mechanism of action of a WWTR1(TAZ)-CAMTA1 fusion oncoprotein
Q34399564	Mechanisms of dietary response in mice and primates: a role for EGR1 in regulating the reaction to human-specific nutritional content.
Q38935691	Mechanisms of epigenetic and cell-type specific regulation of Hey target genes in ES cells and cardiomyocytes
Q36745036	Mediator facilitates transcriptional activation and dynamic long-range contacts at the IgH locus during class switch recombination
Q28267938	Mediator kinase inhibition further activates super-enhancer-associated genes in AML
Q33665250	Medium-chain-length polyhydroxyalkanoates synthesis by Pseudomonas putida KT2440 relA/spoT mutant: bioprocess characterization and transcriptome analysis
Q34664514	Mef2A, a homologue of animal Mef2 transcription factors, regulates cell differentiation in Dictyostelium discoideum
Q33617834	Meiotic drive impacts expression and evolution of x-linked genes in stalk-eyed flies
Q34654508	Melanoma patient-derived xenografts accurately model the disease and develop fast enough to guide treatment decisions.
Q92208556	Melatonin enhances cotton immunity to Verticillium wilt via manipulating lignin and gossypol biosynthesis
Q30394045	Members of the human gut microbiota involved in recovery from Vibrio cholerae infection
Q92185713	Membralin deficiency dysregulates astrocytic glutamate homeostasis leading to ALS-like impairment
Q52718295	Menin regulates the serine biosynthetic pathway in Ewing sarcoma.
Q92172502	Mepiquat chloride promotes cotton lateral root formation by modulating plant hormone homeostasis
Q37252425	Messenger RNA is a functional component of a chromatin insulator complex
Q49830764	Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals.
Q35646018	Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism
Q35680584	MetaDiff: differential isoform expression analysis using random-effects meta-regression
Q59574928	Metabolic Biosynthesis Pathways Identified from Fecal Microbiome Associated with Prostate Cancer
Q55005450	Metabolic Reprogramming in Leaf Lettuce Grown Under Different Light Quality and Intensity Conditions Using Narrow-Band LEDs.
Q38905544	Metabolic Stress Drives Keratinocyte Defenses against Staphylococcus aureus Infection.
Q41563536	Metabolic and transcriptomic analysis of Huntington's disease model reveal changes in intracellular glucose levels and related genes
Q89539265	Metabolic engineering of the cellulolytic thermophilic fungus Myceliophthora thermophila to produce ethanol from cellobiose
Q38810786	Metabolic heterogeneity signature of primary treatment-naïve prostate cancer
Q92757099	Metabolic landscape of the tumor microenvironment at single cell resolution
Q47410566	Metabolic modeling helps interpret transcriptomic changes during malaria
Q42504061	Metabolically Active Three-Dimensional Brown Adipose Tissue Engineered from White Adipose-Derived Stem Cells
Q64252544	Metabolism as an early predictor of DPSCs aging
Q40451974	Metabolo-transcriptome profiling of barley reveals induction of chitin elicitor receptor kinase gene (HvCERK1) conferring resistance against Fusarium graminearum.
Q92447889	Metabolome and Transcriptome Analysis Reveals Putative Genes Involved in Anthocyanin Accumulation and Coloration in White and Pink Tea (Camellia sinensis) Flower
Q64081510	Metabolome and Transcriptome Sequencing Analysis Reveals Anthocyanin Metabolism in Pink Flowers of Anthocyanin-Rich Tea ()
Q60908565	Metabolome and transcriptome-wide effects of the carbon storage regulator A in enteropathogenic Escherichia coli
Q114873469	Metabolomics and Dual RNA-Sequencing on Root Nodules Revealed New Cellular Functions Controlled by Paraburkholderia phymatum NifA
Q55076081	Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum σ54 During Symbiosis with Phaseolus vulgaris.
Q89900585	Metabolomics and the pig model reveal aberrant cardiac energy metabolism in metabolic syndrome
Q47205404	Metabolomics technology and bioinformatics for precision medicine.
Q28834368	Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem
Q37593138	Metagenomics of Two Severe Foodborne Outbreaks Provides Diagnostic Signatures and Signs of Coinfection Not Attainable by Traditional Methods
Q33865098	Metastatic triple-negative breast cancer patient with TP53 tumor mutation experienced 11 months progression-free survival on bortezomib monotherapy without adverse events after ending standard treatments with grade 3 adverse events
Q50147509	Metatranscriptome Sequencing Reveals Insights into the Gene Expression and Functional Potential of Rumen Wall Bacteria.
Q28652175	Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw
Q90704356	Methodology to analyze gene expression patterns of early mammary development in pig models
Q33745576	Methods for comprehensive experimental identification of RNA-protein interactions
Q30831286	Methods for time series analysis of RNA-seq data with application to human Th17 cell differentiation
Q92416727	Methyl-CpG-binding domain 9 (MBD9) is required for H2A.Z incorporation into chromatin at a subset of H2A.Z-enriched regions in the Arabidopsis genome
Q36739006	Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma
Q36443334	MethylAction: detecting differentially methylated regions that distinguish biological subtypes
Q59801772	Methylation-Based Classification of Cervical Squamous Cell Carcinoma into Two New Subclasses Differing in Immune-Related Gene Expression
Q37276288	Methylmercury exposure increases lipocalin related (lpr) and decreases activated in blocked unfolded protein response (abu) genes and specific miRNAs in Caenorhabditis elegans
Q35144970	Methylome diversification through changes in DNA methyltransferase sequence specificity.
Q34782887	Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa
Q36101917	Metronomic cyclophosphamide activation of anti-tumor immunity: tumor model, mouse host, and drug schedule dependence of gene responses and their upstream regulators
Q37568407	MiR-193b and miR-365-1 are not required for the development and function of brown fat in the mouse
Q35844156	MiR-21 is required for efficient kidney regeneration in fish
Q27316536	MiR-210 promotes sensory hair cell formation in the organ of corti
Q36050488	MiR-9a-5p regulates proliferation and migration of hepatic stellate cells under pressure through inhibition of Sirt1.
Q35202826	MiRNAs with apoptosis regulating potential are differentially expressed in chronic exercise-induced physiologically hypertrophied hearts
Q45982999	Mice deficient in NRROS show abnormal microglial development and neurological disorders.
Q37663576	Micro RNAs and DNA methylation are regulatory players in human cells with altered X chromosome to autosome balance
Q59336144	MicroRNA 399 as a potential integrator of photo-response, phosphate homeostasis, and sucrose signaling under long day condition
Q35625498	MicroRNA Expression Profile in Bovine Granulosa Cells of Preovulatory Dominant and Subordinate Follicles during the Late Follicular Phase of the Estrous Cycle.
Q91910268	MicroRNA Expression Profiling Screen miR-3557/324-Targeted CaMK/mTOR in the Rat Striatum of Parkinson's Disease in Regular Aerobic Exercise
Q64065899	MicroRNA Sequencing Revealed Adaptation to Long-Term Boron Toxicity through Modulation of Root Development by miR319 and miR171
Q38620937	MicroRNA and mesial temporal lobe epilepsy with hippocampal sclerosis: Whole miRNome profiling of human hippocampus
Q47282175	MicroRNA dynamics at the onset of primordial germ and somatic cells sex differentiation during mouse embryonic gonad development.
Q35827794	MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
Q37702119	MicroRNA expressing profiles in A53T mutant alpha-synuclein transgenic mice and Parkinsonian
Q47115981	MicroRNA expression analysis of feline and canine parvovirus infection in vivo (felis).
Q37119515	MicroRNA expression and gene regulation drive breast cancer progression and metastasis in PyMT mice
Q51502887	MicroRNA profiling analysis throughout tomato fruit development and ripening reveals potential regulatory role of RIN on microRNAs accumulation.
Q46614440	MicroRNA profiling of antler stem cells in potentiated and dormant states and their potential roles in antler regeneration
Q35225397	MicroRNA profiling of atrial fibrillation in canines: miR-206 modulates intrinsic cardiac autonomic nerve remodeling by regulating SOD1.
Q34468508	MicroRNA sequence profiles of human kidney allografts with or without tubulointerstitial fibrosis
Q35013592	MicroRNA-146 function in the innate immune transcriptome response of zebrafish embryos to Salmonella typhimurium infection
Q35793698	MicroRNA-146a modulates B-cell oncogenesis by regulating Egr1.
Q33814852	MicroRNA-17~92 is required for nephrogenesis and renal function
Q33964829	MicroRNA-21 regulates the self-renewal of mouse spermatogonial stem cells
Q36371541	MicroRNA-3151 inactivates TP53 in BRAF-mutated human malignancies
Q95851045	MicroRNA-934 is a novel primate-specific small non-coding RNA with neurogenic function during early development
Q30940333	MicroRNA-Seq Data Analysis Pipeline to Identify Blood Biomarkers for Alzheimer's Disease from Public Data
Q35883959	MicroRNA-induced negative regulation of TLR-5 in grass carp, Ctenopharyngodon idella
Q36320483	MicroRNA-mRNA interactions underlying colorectal cancer molecular subtypes.
Q35894490	MicroRNA-mediated susceptible poplar gene expression regulation associated with the infection of virulent Melampsora larici-populina
Q36155959	MicroRNAs Classify Different Disease Behavior Phenotypes of Crohn's Disease and May Have Prognostic Utility
Q47393195	MicroRNAs and ectodermal specification I. Identification of miRs and miR-targeted mRNAs in early anterior neural and epidermal ectoderm.
Q46330068	MicroRNAs as predictors for CNS relapse of systemic diffuse large B-cell lymphoma
Q30855796	MicroRNAs control mRNA fate by compartmentalization based on 3' UTR length in male germ cells
Q42260827	MicroRNAs for Detection of Pancreatic Neoplasia: Biomarker Discovery by Next-generation Sequencing and Validation in 2 Independent Cohorts
Q35105770	MicroRNAs located in the Hox gene clusters are implicated in huntington's disease pathogenesis.
Q89701647	MicroRNAs regulate innate immunity against uropathogenic and commensal-like Escherichia coli infections in the surrogate insect model Galleria mellonella
Q47145492	MicroRNAs sequencing unveils distinct molecular subgroups of plasmablastic lymphoma
Q33655877	MicroRNAs shape circadian hepatic gene expression on a transcriptome-wide scale.
Q35971308	Microbial Diversity and Parasitic Load in Tropical Fish of Different Environmental Conditions
Q35562612	Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill
Q36378843	Microbial response to simulated global change is phylogenetically conserved and linked with functional potential
Q47149781	Microbiome Datasets Are Compositional: And This Is Not Optional.
Q35821590	Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities
Q34525116	Microbiota diversity and gene expression dynamics in human oral biofilms
Q34153834	Microbiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape
Q33865173	Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha
Q24304459	Microcephaly gene links trithorax and REST/NRSF to control neural stem cell proliferation and differentiation
Q92857508	Microcystin-LR Degradation and Gene Regulation of Microcystin-Degrading Novosphingobium sp. THN1 at Different Carbon Concentrations
Q37485686	Microenvironmental Gene Expression Plasticity Among Individual Drosophila melanogaster.
Q28542485	Microevolution of Candida albicans in macrophages restores filamentation in a nonfilamentous mutant
Q90347682	Microglia Adopt Longitudinal Transcriptional Changes After Traumatic Brain Injury
Q57173962	Microgravity-Induced Alterations of Inflammation-Related Mechanotransduction in Endothelial Cells on Board SJ-10 Satellite
Q30557507	Microtubules underlie dysfunction in duchenne muscular dystrophy.
Q90220408	Midgut de novo transcriptome analysis and gene expression profiling of Spodoptera exigua larvae exposed with sublethal concentrations of Cry1Ca protein
Q90639134	Migratory DCs activate TGF-β to precondition naïve CD8+ T cells for tissue-resident memory fate
Q36188413	MinePath: Mining for Phenotype Differential Sub-paths in Molecular Pathways.
Q24632723	Miniature inverted-repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa
Q30378121	Miniaturization Technologies for Efficient Single-Cell Library Preparation for Next-Generation Sequencing.
Q28394835	Mining gene expression data for pollutants (dioxin, toluene, formaldehyde) and low dose of gamma-irradiation
Q36294246	Minocycline counter-regulates pro-inflammatory microglia responses in the retina and protects from degeneration
Q37003196	Minotaur is critical for primary piRNA biogenesis.
Q46557636	Mitochondrial DNA depletion induces innate immune dysfunction rescued by IFN-γ.
Q37695963	Mitochondrial energy deficiency leads to hyperproliferation of skeletal muscle mitochondria and enhanced insulin sensitivity
Q101038795	Mitochondrial gene signature in the prefrontal cortex for differential susceptibility to chronic stress
Q42775126	Mitochondrial genotype and phenotypic plasticity of gene expression in response to cold acclimation in killifish
Q58781228	Mitochondrial ubiquinone-mediated longevity is marked by reduced cytoplasmic mRNA translation
Q37347784	Mitochondrial-Nuclear Interactions Mediate Sex-Specific Transcriptional Profiles in Drosophila.
Q43478776	Mitonuclear Interactions Mediate Transcriptional Responses to Hypoxia in Drosophila
Q36101216	MixMC: A Multivariate Statistical Framework to Gain Insight into Microbial Communities
Q49959959	Mixed-species RNAseq analysis of human lymphoma cells adhering to mouse stromal cells identifies a core gene set that is also differentially expressed in the lymph node microenvironment of mantle cell lymphoma and chronic lymphocytic leukemia patien
Q36371998	Mixture models reveal multiple positional bias types in RNA-Seq data and lead to accurate transcript concentration estimates
Q55206405	Mlh1 deficiency in normal mouse colon mucosa associates with chromosomally unstable colon cancer.
Q64360970	MoSnt2-dependent deacetylation of histone H3 mediates MoTor-dependent autophagy and plant infection by the rice blast fungus Magnaporthe oryzae
Q38882162	Mocap: large-scale inference of transcription factor binding sites from chromatin accessibility
Q90242516	Model-based clustering for identifying disease-associated SNPs in case-control genome-wide association studies
Q30050175	Modeling Alveolar Soft Part Sarcomagenesis in the Mouse: A Role for Lactate in the Tumor Microenvironment
Q31003291	Modeling Exon-Specific Bias Distribution Improves the Analysis of RNA-Seq Data
Q34578684	Modeling Expression Plasticity of Genes that Differentiate Drug-sensitive from Drug-resistant Cells to Chemotherapeutic Treatment
Q92922602	Modeling and analysis of RNA-seq data: a review from a statistical perspective
Q33635591	Modeling anorexia nervosa: transcriptional insights from human iPSC-derived neurons
Q33878956	Modeling bias and variation in the stochastic processes of small RNA sequencing.
Q42287793	Modeling dynamic functional relationship networks and application to ex vivo human erythroid differentiation
Q37482304	Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation.
Q40195583	Modeling overdispersion heterogeneity in differential expression analysis using mixtures
Q30574430	Modeling read counts for CNV detection in exome sequencing data
Q35015728	Modeling the next generation sequencing sample processing pipeline for the purposes of classification
Q38634964	Modeling time-series data from microbial communities
Q33356696	Modeling transcriptional networks regulating secondary growth and wood formation in forest trees
Q37591118	Modelling and rescuing neurodevelopmental defect of Down syndrome using induced pluripotent stem cells from monozygotic twins discordant for trisomy 21.
Q38687153	Moderate Expression of SEC16 Increases Protein Secretion by Saccharomyces cerevisiae
Q29547403	Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Q35181477	Modifying effects of vitamin E on chlorpyrifos toxicity in atlantic salmon
Q35096976	Modular construction of mammalian gene circuits using TALE transcriptional repressors.
Q50897128	Modulating cancer cell survival by targeting intracellular cholesterol transport.
Q64080259	Modulation of ADAR mRNA expression in patients with congenital heart defects
Q92092447	Modulation of defence and iron homeostasis genes in rice roots by the diazotrophic endophyte Herbaspirillum seropedicae
Q41536641	Modulation of the spleen transcriptome in domestic turkey (Meleagris gallopavo) in response to aflatoxin B1 and probiotics
Q33764210	Mof-associated complexes have overlapping and unique roles in regulating pluripotency in embryonic stem cells and during differentiation.
Q60932173	Molecular Characterization and Overexpression of Increases the Production of Phenolic Acids in
Q90383844	Molecular Characterization of the Transcription Factors in Susceptible Poplar Infected with Virulent Melampsora larici-populina
Q33723644	Molecular Link between Leaf Coloration and Gene Expression of Flavonoid and Carotenoid Biosynthesis in Camellia sinensis Cultivar 'Huangjinya'
Q90452367	Molecular Mode of Action of Asteriscus graveolens as an Anticancer Agent
Q52720328	Molecular Signatures of Regression of the Canine Transmissible Venereal Tumor.
Q99633669	Molecular action of pyriproxyfen: Role of the Methoprene-tolerant protein in the pyriproxyfen-induced sterilization of adult female mosquitoes
Q37330688	Molecular analysis of aggressive renal cell carcinoma with unclassified histology reveals distinct subsets.
Q34655067	Molecular and cellular characterization of a zebrafish optic pathway tumor line implicates glia-derived progenitors in tumorigenesis.
Q46159490	Molecular and cellular reorganization of neural circuits in the human lineage.
Q28647951	Molecular and neuronal homology between the olfactory systems of zebrafish and mouse
Q57093123	Molecular and physiological responses in roots of two full-sib poplars uncover mechanisms that contribute to differences in partial submergence tolerance
Q34421235	Molecular architecture of transcription factor hotspots in early adipogenesis.
Q55316120	Molecular basis of autotrophic vs mixotrophic growth in Chlorella sorokiniana.
Q90061096	Molecular characterisation of a cellular conveyor belt in Clytia medusae
Q41428369	Molecular characterization and transcriptome analysis of orange head Chinese cabbage (Brassica rapa L. ssp. pekinensis).
Q43906019	Molecular codes for cell type specification in Brn3 retinal ganglion cells.
Q52723648	Molecular dissection of distinct symptoms induced by tomato chlorosis virus and tomato yellow leaf curl virus based on comparative transcriptome analysis.
Q37609839	Molecular dissection of germline chromothripsis in a developmental context using patient-derived iPS cells
Q90909091	Molecular evidence for the inhibition of cytochrome p450s and cholinesterases in ticks by the repellent DEET
Q35770202	Molecular evolution and in vitro characterization of Botryllus histocompatibility factor
Q58928374	Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks
Q46396184	Molecular genetic analysis of the melanoma regulatory locus in Xiphophorus interspecies hybrids.
Q36327592	Molecular genetic response to varied wavelengths of light in Xiphophorus maculatus skin
Q42362883	Molecular insights into reproduction regulation of female Oriental River prawns Macrobrachium nipponense through comparative transcriptomic analysis
Q55313727	Molecular mechanism of seed dormancy release induced by fluridone compared with cod stratification in Notopterygium incisum.
Q57809518	Molecular mechanism of the extended oil accumulation phase contributing to the high seed oil content for the genotype of tung tree (Vernicia fordii)
Q39019714	Molecular mechanisms of desiccation tolerance in the resurrection glacial relic Haberlea rhodopensis.
Q28607243	Molecular profiling of activated olfactory neurons identifies odorant receptors for odors in vivo
Q92093181	Molecular profiling of driver events in metastatic uveal melanoma
Q30389146	Molecular signatures discriminating the male and the female sexual pathways in the pearl oyster Pinctada margaritifera
Q57799336	Molecular signatures in IASLC/ATS/ERS classified growth patterns of lung adenocarcinoma
Q91717587	Monitoring Cell-Type-Specific Gene Expression Using Ribosome Profiling In Vivo During Cardiac Hemodynamic Stress
Q42039783	Monitoring of technical variation in quantitative high-throughput datasets
Q34995907	Morphine and cocaine increase serum- and glucocorticoid-inducible kinase 1 activity in the ventral tegmental area
Q36324643	Morphological Characters and Transcriptome Profiles Associated with Black Skin and Red Skin in Crimson Snapper (Lutjanus erythropterus)
Q30823548	Morphological and Transcriptomic Analysis of a Beetle Chemosensory System Reveals a Gnathal Olfactory Center
Q34072345	Morphology and quantitative monitoring of gene expression patterns during floral induction and early flower development in Dendrocalamus latiflorus
Q36728526	Mouse SAMHD1 has antiretroviral activity and suppresses a spontaneous cell-intrinsic antiviral response
Q36557075	Mouse TU tagging: a chemical/genetic intersectional method for purifying cell type-specific nascent RNA.
Q91761153	Mouse and human urothelial cancer organoids: A tool for bladder cancer research
Q36802641	Mouse myofibers lacking the SMYD1 methyltransferase are susceptible to atrophy, internalization of nuclei and myofibrillar disarray
Q37217879	Mouse oocytes suppress miR-322-5p expression in ovarian granulosa cells
Q64898545	Moving Just Enough Deep Sequencing Data to Get the Job Done.
Q36043956	Msa1 and Msa2 Modulate G1-Specific Transcription to Promote G1 Arrest and the Transition to Quiescence in Budding Yeast
Q42265775	Msn2/4 regulate expression of glycolytic enzymes and control transition from quiescence to growth
Q47750159	MuMADS1 and MaOFP1 regulate fruit quality in a tomato ovate mutant
Q90374310	Multi-OMICS analyses unveil STAT1 as a potential modifier gene in mevalonate kinase deficiency
Q35160825	Multi-omics analysis defines core genomic alterations in pheochromocytomas and paragangliomas
Q64956550	Multi-omics analysis of the development and fracture resistance for maize internode.
Q99591844	Multi-omics profiling highlights lipid metabolism alterations in pigs fed low-dose antibiotics
Q40727604	MultiRankSeq: multiperspective approach for RNAseq differential expression analysis and quality control
Q38607708	Multicohort analysis reveals baseline transcriptional predictors of influenza vaccination responses
Q49414498	Multifunctional role of the transcription factor Blimp-1 in coordinating plasma cell differentiation.
Q41902696	Multiparameter functional diversity of human C2H2 zinc finger proteins.
Q37276508	Multiplatform single-sample estimates of transcriptional activation
Q61443953	Multiple QTL underlie milk phenotypes at the CSF2RB locus
Q36868961	Multiple reference genomes and transcriptomes for Arabidopsis thaliana
Q92093223	Multiplex secretome engineering enhances recombinant protein production and purity
Q34478710	Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display
Q46094386	Multiplexed droplet single-cell RNA-sequencing using natural genetic variation
Q96127347	Multiplexed relative and absolute quantitative immunopeptidomics reveals MHC I repertoire alterations induced by CDK4/6 inhibition
Q90290921	Multitable Methods for Microbiome Data Integration
Q90099878	Murine Perinatal β-Cell Proliferation and the Differentiation of Human Stem Cell-Derived Insulin-Expressing Cells Require NEUROD1
Q64233748	Murine trophoblast-derived and pregnancy-associated exosome-enriched extracellular vesicle microRNAs: Implications for placenta driven effects on maternal physiology
Q35183855	Musashi2 sustains the mixed-lineage leukemia-driven stem cell regulatory program
Q91910625	Mutant CEBPA directly drives the expression of the targetable tumor-promoting factor CD73 in AML
Q92876021	Mutant Huntingtin Affects Diabetes and Alzheimer's Markers in Human and Cell Models of Huntington's Disease
Q35604082	Mutant U2AF1 Expression Alters Hematopoiesis and Pre-mRNA Splicing In Vivo
Q37581442	Mutant U2AF1-expressing cells are sensitive to pharmacological modulation of the spliceosome
Q36158346	Mutation of Rv2887, a marR-like gene, confers Mycobacterium tuberculosis resistance to an imidazopyridine-based agent.
Q34074478	Mutation of senataxin alters disease-specific transcriptional networks in patients with ataxia with oculomotor apraxia type 2
Q52651787	Mutational signatures reveal the role of RAD52 in p53-independent p21-driven genomic instability.
Q38870247	Mutations in Argonaute5 Illuminate Epistatic Interactions of the K1 and I Loci Leading to Saddle Seed Color Patterns in Glycine max.
Q34272909	Mutations in CECR1 associated with a neutrophil signature in peripheral blood
Q57796326	Mutations in GFAP Disrupt the Distribution and Function of Organelles in Human Astrocytes
Q58694336	Mutations, Differential Gene Expression, and Chimeric Transcripts in Esophageal Squamous Cell Carcinoma Show High Heterogeneity
Q36079204	Mutual regulation between Satb2 and Fezf2 promotes subcerebral projection neuron identity in the developing cerebral cortex
Q42774508	Mycorrhizal phosphate uptake pathway in maize: vital for growth and cob development on nutrient poor agricultural and greenhouse soils
Q57022718	Myelo-lymphoid lineage restriction occurs in the human haematopoietic stem cell compartment before lymphoid-primed multipotent progenitors
Q37478599	Myeloid translocation genes differentially regulate colorectal cancer programs.
Q93186301	N 4-Cytosine DNA Methylation Is Involved in the Maintenance of Genomic Stability in Deinococcus radiodurans
Q38440172	N-(3-oxo-hexanoyl)-homoserine lactone has a critical contribution to the quorum-sensing-dependent regulation in phytopathogen Pseudomonas syringae pv. tabaci 11528.
Q47279096	N-Glycan-dependent protein folding and endoplasmic reticulum retention regulate GPI-anchor processing
Q92255940	N-Terminal Truncated Myb with New Transcriptional Activity Produced Through Use of an Alternative MYB Promoter in Salivary Gland Adenoid Cystic Carcinoma
Q33763086	N-acylhomoserine lactone-regulation of genes mediating motility and pathogenicity in Pseudomonas syringae pathovar tabaci 11528.
Q33771050	N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes
Q35568821	N6-adenosine methylation in MiRNAs
Q24310545	N6-methyladenosine-dependent regulation of messenger RNA stability
Q89927291	NAA and 6-BA promote accumulation of oleanolic acid by JA regulation in Achyranthes bidentata Bl
Q90066023	NAL8 encodes a prohibitin that contributes to leaf and spikelet development by regulating mitochondria and chloroplasts stability in rice
Q57821345	NBCe1 Na-HCO3 cotransporter ablation causes reduced apoptosis following cardiac ischemia-reperfusion injury
Q91809405	NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region
Q59301309	NF-κB-Dependent Lymphoid Enhancer Co-option Promotes Renal Carcinoma Metastasis
Q28259999	NF-κB-activating complex engaged in response to EGFR oncogene inhibition drives tumor cell survival and residual disease in lung cancer
Q90346658	NGS-identified circulating miR-375 as a potential regulating component of myocardial infarction associated network
Q39722175	NODULES WITH ACTIVATED DEFENSE 1 is required for maintenance of rhizobial endosymbiosis in Medicago truncatula.
Q30806890	NOTCH1 mediates a switch between two distinct secretomes during senescence.
Q30663634	NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data
Q92962287	NPM1 as a potential therapeutic target for atypical teratoid/rhabdoid tumors
Q24634597	NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs
Q35691181	Naive and primed murine pluripotent stem cells have distinct miRNA expression profiles
Q34104092	NanoStriDE: normalization and differential expression analysis of NanoString nCounter data
Q31118292	NanoStringDiff: a novel statistical method for differential expression analysis based on NanoString nCounter data
Q37587070	Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition
Q35342805	Nascent transcription affected by RNA polymerase IV in Zea mays
Q37458826	Nasonia vitripennis venom causes targeted gene expression changes in its fly host
Q47428675	Native Elongating Transcript Sequencing reveals global anti-correlation between sense and antisense nascent transcription in fission yeast
Q35118800	Natural antisense transcripts and long non-coding RNA in Neurospora crassa
Q47311892	Natural changes in light interact with circadian regulation at promoters to control gene expression in cyanobacteria
Q40042810	Natural genetic variation of the cardiac transcriptome in non-diseased donors and patients with dilated cardiomyopathy.
Q39217031	Natural selection and the genetic basis of osmoregulation in heteromyid rodents as revealed by RNA-seq
Q57817834	Natural variation for gene expression responses to abiotic stress in maize
Q33657743	Natural variation of histone modification and its impact on gene expression in the rat genome
Q54936205	Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis.
Q54966844	Necroptosis promotes cell-autonomous activation of proinflammatory cytokine gene expression.
Q94481776	Negative binomial additive model for RNA-Seq data analysis
Q31152520	Negative binomial mixed models for analyzing microbiome count data
Q42937398	Negative feedback buffers effects of regulatory variants
Q92514387	Negative regulation of miR-1275 by H3K27me3 is critical for glial induction of glioblastoma cells
Q39695230	Neocortical development as an evolutionary platform for intragenomic conflict
Q36618505	Neonatal thymectomy reveals differentiation and plasticity within human naive T cells
Q50099223	NetMiner-an ensemble pipeline for building genome-wide and high-quality gene co-expression network using massive-scale RNA-seq samples.
Q40976178	Network Analyses Reveal Shifts in Transcript Profiles and Metabolites That Accompany the Expression of SUN and an Elongated Tomato Fruit
Q28547827	Network Modeling Reveals Cross Talk of MAP Kinases during Adaptation to Caspofungin Stress in Aspergillus fumigatus
Q38838346	Network Module-Based Model in the Differential Expression Analysis for RNA-seq
Q41526807	Network analyses identify liver-specific targets for treating liver diseases
Q41691676	Network analysis based on TCGA reveals hub genes in colon cancer
Q36603753	Network analysis of the metabolome and transcriptome reveals novel regulation of potato pigmentation
Q36003921	Network analysis reveals stage-specific changes in zebrafish embryo development using time course whole transcriptome profiling and prior biological knowledge
Q42777982	Network embedding-based representation learning for single cell RNA-seq data
Q57806417	Network of GRAS transcription factors involved in the control of arbuscule development in Lotus japonicus
Q92653321	Network-based feature selection reveals substructures of gene modules responding to salt stress in rice
Q36394231	Networks of energetic and metabolic interactions define dynamics in microbial communities
Q36761380	Neural Progenitors Adopt Specific Identities by Directly Repressing All Alternative Progenitor Transcriptional Programs
Q37003765	Neural stem cell-encoded temporal patterning delineates an early window of malignant susceptibility in Drosophila
Q37287225	Neuraminidase A-Exposed Galactose Promotes Streptococcus pneumoniae Biofilm Formation during Colonization.
Q35680936	Neurodevelopmental LincRNA Microsyteny Conservation and Mammalian Brain Size Evolution
Q30369071	Neuroendocrine modulation sustains the C. elegans forward motor state.
Q42776375	Neuronal identity genes regulated by super-enhancers are preferentially down-regulated in the striatum of Huntington's disease mice
Q37584778	Neuronal sFlt1 and Vegfaa determine venous sprouting and spinal cord vascularization.
Q28585674	Neuropsychological deficits in mice depleted of the schizophrenia susceptibility gene CSMD1.
Q35772955	Neurotranscriptomics: The Effects of Neonatal Stimulus Deprivation on the Rat Pineal Transcriptome
Q40590626	Neurotrophic tyrosine kinase receptor 1 is a direct transcriptional and epigenetic target of IL-13 involved in allergic inflammation.
Q38740592	New Insights into the Anti-pathogenic Potential of Lactococcus garvieae against Staphylococcus aureus Based on RNA Sequencing Profiling
Q64071548	New Insights of Salicylic Acid Into Stamen Abortion of Female Flowers in Tung Tree ()
Q90081613	New evolving strategies revealed by transcriptomic analysis of a fur- mutant of the cyanotrophic bacterium Pseudomonas pseudoalcaligenes CECT 5344
Q38719843	New insights into human primordial germ cells and early embryonic development from single-cell analysis
Q57054615	New insights into the cellular temporal response to proteostatic stress
Q30573843	New insights into the roles of NADPH oxidases in sexual development and ascospore germination in Sordaria macrospora.
Q39992304	New molecular insights into modulation of platelet reactivity in aspirin-treated patients using a network-based approach
Q64069910	New molecular insights on the response of the green alga Tetraselmis suecica to nitrogen starvation
Q31133823	Next Generation Sequencing Data and Proteogenomics.
Q92825594	Next Generation Sequencing-Based Transcriptome Predicts Bevacizumab Efficacy in Combination with Temozolomide in Glioblastoma
Q38014423	Next generation quantitative genetics in plants
Q34550899	Next generation sequencing based transcriptome analysis of septic-injury responsive genes in the beetle Tribolium castaneum
Q36689169	Next generation sequencing in cancer research and clinical application
Q61763828	Next generation sequencing of RNA reveals novel targets of resveratrol with possible implications for Canavan disease
Q40708562	Next generation sequencing of sex-specific genes in the livers of obese ZSF1 rats
Q26746206	Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research
Q42082546	Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series
Q39243946	Next-Generation Sequencing Analysis of Long Noncoding RNAs in CD4+ T Cell Differentiation
Q61812596	Next-Generation Sequencing Reveals the Role of Epigallocatechin-3-Gallate in Regulating Putative Novel and Known microRNAs Which Target the MAPK Pathway in Non-Small-Cell Lung Cancer A549 Cells
Q36434255	Next-Generation mRNA Sequencing Reveals Pyroptosis-Induced CD4+ T Cell Death in Early Simian Immunodeficiency Virus-Infected Lymphoid Tissues
Q37082004	Next-generation annotation of prokaryotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011.
Q36939439	Next-generation profiling to identify the molecular etiology of Parkinson dementia
Q34309416	Next-generation sequencing identifies equine cartilage and subchondral bone miRNAs and suggests their involvement in osteochondrosis physiopathology.
Q40412434	Next-generation sequencing of microRNAs in primary human polarized macrophages
Q42237368	Next-generation sequencing of microRNAs uncovers expression signatures in polarized macrophages
Q36576661	Next-generation sequencing of small RNAs from HIV-infected cells identifies phased microrna expression patterns and candidate novel microRNAs differentially expressed upon infection
Q38299502	Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer
Q37966579	Next-generation sequencing technologies for gene expression profiling in plants
Q30712646	Next-generation technologies and data analytical approaches for epigenomics
Q33886530	Niche-mediated depletion of the normal hematopoietic stem cell reservoir by Flt3-ITD-induced myeloproliferation.
Q41243398	Niche-specific gene expression in a parasitic nematode; increased expression of immunomodulators in Teladorsagia circumcincta larvae derived from host mucosa.
Q99406896	Nitrogen as the major factor influencing gene expression in Yarrowia lipolytica
Q39387886	Nitrogen cost minimization is promoted by structural changes in the transcriptome of N-deprived Prochlorococcus cells
Q45934490	Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism.
Q33591207	Nkx2.5 marks angioblasts that contribute to hemogenic endothelium of the endocardium and dorsal aorta.
Q91844172	Nomogram Based on microRNA Signature Contributes to Improve Survival Prediction of Clear Cell Renal Cell Carcinoma
Q57169925	Non-Coding Transcriptome Maps across Twenty Tissues of the Korean Black Chicken, Yeonsan Ogye
Q37458938	Non-IG aberrations of FOXP1 in B-cell malignancies lead to an aberrant expression of N-truncated isoforms of FOXP1.
Q57791261	Non-canonical Drosophila X chromosome dosage compensation and repressive topologically associated domains
Q56533656	Non-classical Immunity Controls Microbiota Impact on Skin Immunity and Tissue Repair
Q35903604	Non-coding RNA profiling of the developing murine lens
Q28660160	Non-growing Rhodopseudomonas palustris increases the hydrogen gas yield from acetate by shifting from the glyoxylate shunt to the tricarboxylic acid cycle
Q90833266	Noncanonical CTD kinases regulate RNA polymerase II in a gene-class-specific manner
Q35213438	Noncoding RNA transcription targets AID to divergently transcribed loci in B cells.
Q31121214	Noncoding RNA: Current Deep Sequencing Data Analysis Approaches and Challenges
Q22065593	Nonhuman genetics. Genomic basis for the convergent evolution of electric organs
Q36540742	Nonmuscle myosin IIB as a therapeutic target for the prevention of relapse to methamphetamine use.
Q92358756	Nonparametric expression analysis using inferential replicate counts
Q47198829	Nonsense mRNA suppression via nonstop decay
Q44328036	Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome
Q64078650	NormExpression: An R Package to Normalize Gene Expression Data Using Evaluated Methods
Q96231466	NormQ: RNASeq normalization based on RT-qPCR derived size factors
Q35814946	Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns
Q37549988	Normal chromosome conformation depends on subtelomeric facultative heterochromatin in Neurospora crassa
Q89623260	Normalization Methods for the Analysis of Unbalanced Transcriptome Data: A Review
Q89966214	Normalization Methods on Single-Cell RNA-seq Data: An Empirical Survey
Q31169829	Normalization and microbial differential abundance strategies depend upon data characteristics
Q92212958	Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
Q30844396	Normalization of RNA-seq data using factor analysis of control genes or samples
Q36110889	Normalization of human RNA-seq experiments using chimpanzee RNA as a spike-in standard.
Q35942165	Normalization of transposon-mutant library sequencing datasets to improve identification of conditionally essential genes
Q35930225	Normalization, bias correction, and peak calling for ChIP-seq
Q34049214	Normalization, testing, and false discovery rate estimation for RNA-sequencing data
Q36371785	Normalizing single-cell RNA sequencing data: challenges and opportunities
Q90390334	Norrin mediates tumor-promoting and -suppressive effects in glioblastoma via Notch and WNT
Q35237791	Nourishment level affects caste-related gene expression in Polistes wasps
Q51019461	Novel Androgen Receptor Coregulator GRHL2 Exerts Both Oncogenic and Antimetastatic Functions in Prostate Cancer.
Q40697900	Novel DICER-LIKE1 siRNAs Bypass the Requirement for DICER-LIKE4 in Maize Development.
Q64082860	Novel Data Transformations for RNA-seq Differential Expression Analysis
Q55401178	Novel Fungal Pathogenicity and Leaf Defense Strategies Are Revealed by Simultaneous Transcriptome Analysis of Colletotrichum fructicola and Strawberry Infected by This Fungus.
Q36957976	Novel Meiotic miRNAs and Indications for a Role of PhasiRNAs in Meiosis.
Q38678230	Novel Stress-Inducible Antisense RNAs of Protein-Coding Loci Are Synthesized by RNA-Dependent RNA Polymerase
Q90681511	Novel Y-Chromosome Long Non-Coding RNAs Expressed in Human Male CNS During Early Development
Q39613269	Novel fusion genes and chimeric transcripts in ependymal tumors
Q36008219	Novel insight into the non-coding repertoire through deep sequencing analysis
Q89302991	Novel insights into global translational regulation through Pumilio family RNA-binding protein Puf3p revealed by ribosomal profiling
Q35617960	Novel insights into the insect trancriptome response to a natural DNA virus
Q35620146	Novel mechanism for scavenging of hypochlorite involving a periplasmic methionine-rich Peptide and methionine sulfoxide reductase
Q42775775	Novel metabolic features in Acinetobacter baylyi ADP1 revealed by a multiomics approach
Q33778898	Novel method for analysis of allele specific expression in triploid Oryzias latipes reveals consistent pattern of allele exclusion
Q90077681	Novel myocardial markers GADD45G and NDUFS5 identified by RNA-sequencing predicts left ventricular reverse remodeling in advanced non-ischemic heart failure: a retrospective cohort study
Q35999416	Novel roles for LIX1L in promoting cancer cell proliferation through ROS1-mediated LIX1L phosphorylation
Q46015164	Novel roles for the polyphenol oxidase enzyme in secondary metabolism and the regulation of cell death in walnut.
Q47340286	Novel transcriptional networks regulated by CLOCK in human neurons
Q41001247	NtrC-dependent control of exopolysaccharide synthesis and motility in Burkholderia cenocepacia H111.
Q33758532	Nuclear factor one B regulates neural stem cell differentiation and axonal projection of corticofugal neurons
Q64283461	Nuclear receptor NR4A is required for patterning at the ends of the planarian anterior-posterior axis
Q33884842	Nuclear receptors connect progenitor transcription factors to cell cycle control.
Q34442765	Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming
Q55191620	Nucleus-specific expression in the multinuclear mushroom-forming fungus Agaricus bisporus reveals different nuclear regulatory programs.
Q36185909	Numerous genetic loci identified for drought tolerance in the maize nested association mapping populations
Q35816903	Nurr1 and Retinoid X Receptor Ligands Stimulate Ret Signaling in Dopamine Neurons and Can Alleviate α-Synuclein Disrupted Gene Expression
Q42319773	Nutrient starvation leading to triglyceride accumulation activates the Entner Doudoroff pathway in Rhodococcus jostii RHA1.
Q36285402	Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans
Q90251275	OBI-3424, a Novel AKR1C3-Activated Prodrug, Exhibits Potent Efficacy against Preclinical Models of T-ALL
Q31035865	OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data
Q64083442	OMICfpp: a fuzzy approach for paired RNA-Seq counts
Q63359386	OUTRIDER: A Statistical Method for Detecting Aberrantly Expressed Genes in RNA Sequencing Data
Q37152631	Oakleaf: an S locus-linked mutation of Primula vulgaris that affects leaf and flower development
Q61796846	Obesity-associated inflammation triggers an autophagy-lysosomal response in adipocytes and causes degradation of perilipin 1
Q90575038	Obeticholic Acid Modulates Serum Metabolites and Gene Signatures Characteristic of Human NASH and Attenuates Inflammation and Fibrosis Progression in Ldlr-/-.Leiden Mice
Q64232425	Ocimum metabolomics in response to abiotic stresses: Cold, flood, drought and salinity
Q46579757	Omega-3 fatty acids increase the unfolded protein response and improve amyloid-β phagocytosis by macrophages of patients with mild cognitive impairment
Q34001523	On differential gene expression using RNA-Seq data
Q38491004	On the importance of small changes in RNA expression
Q36092013	On the study of microbial transcriptomes using second- and third-generation sequencing technologies
Q35635408	OncoRep: an n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing
Q47289701	Oncogenic Role of THOR, a Conserved Cancer/Testis Long Non-coding RNA.
Q37151366	Oncogenic transformation of Drosophila somatic cells induces a functional piRNA pathway
Q90436091	Oncomelania hupensis retains its ability to transmit Schistosoma japonicum 13 years after migration from permissive to non-permissive areas
Q40084576	Open Chromatin Profiling in hiPSC-Derived Neurons Prioritizes Functional Noncoding Psychiatric Risk Variants and Highlights Neurodevelopmental Loci
Q47171952	Open housing drives the expression of immune response genes in the nasal mucosa, but not the olfactory bulb
Q39628203	Opposing Control by Transcription Factors MYB61 and MYB3 Increases Freezing Tolerance by Relieving C-Repeat Binding Factor Suppression.
Q40136060	Opposing roles of Toll-like receptor and cytosolic DNA-STING signaling pathways for Staphylococcus aureus cutaneous host defense.
Q55432540	Opposing roles of microRNA Argonautes during Caenorhabditis elegans aging.
Q64084417	Opposite T Response of ACTG1-FOS Subnetwork Differentiate Tailfin Fate in Xenopus Tadpole and Post-hatching Axolotl
Q38597549	Optimization of a metatranscriptomic approach to study the lignocellulolytic potential of the higher termite gut microbiome.
Q50319809	Optimization of an RNA-Seq Differential Gene Expression Analysis Depending on Biological Replicate Number and Library Size.
Q30936364	Optimization of miRNA-seq data preprocessing
Q34369461	Optimized PCR conditions and increased shRNA fold representation improve reproducibility of pooled shRNA screens
Q34171196	Optimizing a massive parallel sequencing workflow for quantitative miRNA expression analysis
Q37720691	Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
Q60853678	Oral Cavity Squamous Cell Carcinoma Xenografts Retain Complex Genotypes and Intertumor Molecular Heterogeneity.
Q90179033	Oral dosing for antenatal corticosteroids in the Rhesus macaque
Q28084527	Orchestrating high-throughput genomic analysis with Bioconductor
Q64901499	Oropharyngeal microbiome evaluation highlights Neisseria abundance in active celiac patients.
Q49717910	Orthogonal muscle fibres have different instructive roles in planarian regeneration.
Q47221061	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice
Q36109099	Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments
Q90646358	Osterix functions downstream of anti-Müllerian hormone signaling to regulate Müllerian duct regression
Q36008016	Ostreococcus tauri is a new model green alga for studying iron metabolism in eukaryotic phytoplankton
Q28550014	Ovarian Transcriptome Analysis of Portunus trituberculatus Provides Insights into Genes Expressed during Phase III and IV Development
Q48541084	Ovarian transcriptome associated with reproductive senescence in the long-living Ames dwarf mice.
Q35130772	Over-expression of Arabidopsis AtCHR23 chromatin remodeling ATPase results in increased variability of growth and gene expression
Q36320205	Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data
Q89497358	Overexpressed MAGP1 Is Associated With a Poor Prognosis and Promotes Cell Migration and Invasion in Gastric Cancer
Q91715857	Overexpression of Acyl-ACP Thioesterases, CpFatB4 and CpFatB5, Induce Distinct Gene Expression Reprogramming in Developing Seeds of Brassica napus
Q92060212	Overexpression of COL24A1 in Hepatocellular Carcinoma Predicts Poor Prognosis: A Study Based on Multiple Databases, Clinical Samples and Cell Lines
Q42183867	Overexpression of ERG in cord blood progenitors promotes expansion and recapitulates molecular signatures of high ERG leukemias
Q37601417	Overexpression of MpCYS4, A Phytocystatin Gene from Malus prunifolia (Willd.) Borkh., Enhances Stomatal Closure to Confer Drought Tolerance in Transgenic Arabidopsis and Apple
Q36052681	Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).
Q90057857	Overexpression of SlbHLH95, a basic helix-loop-helix transcription factor family member, impacts trichome formation via regulating gibberellin biosynthesis in tomato
Q37490288	Overexpression of dimethylarginine dimethylaminohydrolase 1 attenuates airway inflammation in a mouse model of asthma
Q91923434	Overexpression of the Lolium perenne L. delta1-pyrroline 5-carboxylate synthase (LpP5CS) gene results in morphological alterations and salinity tolerance in switchgrass (Panicum virgatum L.).
Q35620200	Overlapping DNA methylation dynamics in mouse intestinal cell differentiation and early stages of malignant progression
Q33638200	Overlapping and asymmetric functions of TCR signaling during thymic selection of CD4 and CD8 lineages
Q34121449	Overview of available methods for diverse RNA-Seq data analyses
Q33825092	Oviductal transcriptional profiling of a bovine fertility model by next-generation sequencing
Q36383212	Oviposition but Not Sex Allocation Is Associated with Transcriptomic Changes in Females of the Parasitoid Wasp Nasonia vitripennis
Q38789915	Oxidative Stickland reactions in an obligate aerobic organism - amino acid catabolism in the Crenarchaeon Sulfolobus solfataricus.
Q33888961	Oxidative damage to rhesus macaque spermatozoa results in mitotic arrest and transcript abundance changes in early embryos
Q92889765	Oxygen-induced circRNA profiles and coregulatory networks in a retinopathy of prematurity mouse model
Q47133299	Oxygen-limited metabolism in the methanotroph Methylomicrobium buryatense 5GB1C.
Q41128937	PA3225 Is a Transcriptional Repressor of Antibiotic Resistance Mechanisms in Pseudomonas aeruginosa
Q90351514	PACT-mediated PKR activation acts as a hyperosmotic stress intensity sensor weakening osmoadaptation and enhancing inflammation
Q42775016	PAG1, a cotton brassinosteroid catabolism gene, modulates fiber elongation
Q38465956	PATZ1 Is a DNA Damage-Responsive Transcription Factor That Inhibits p53 Function
Q91045688	PAX5-driven subtypes of B-progenitor acute lymphoblastic leukemia
Q94483817	PBRM1 loss defines a nonimmunogenic tumor phenotype associated with checkpoint inhibitor resistance in renal carcinoma
Q31066839	PCAN: Probabilistic correlation analysis of two non-normal data sets
Q36895616	PD-1 marks dysfunctional regulatory T cells in malignant gliomas
Q47623846	PDM3, a pentatricopeptide repeat-containing protein, affects chloroplast development
Q28306263	PELP1 oncogenic functions involve alternative splicing via PRMT6
Q36434688	PGSB PlantsDB: updates to the database framework for comparative plant genome research
Q55024329	PHB Biosynthesis Counteracts Redox Stress in Herbaspirillum seropedicae.
Q37446336	PHF20 Readers Link Methylation of Histone H3K4 and p53 with H4K16 Acetylation.
Q60931648	PI3Kα/δ inhibition promotes anti-tumor immunity through direct enhancement of effector CD8 T-cell activity
Q48248659	PIEZO2 is required for mechanotransduction in human stem cell-derived touch receptors
Q31035683	PINCAGE: probabilistic integration of cancer genomics data for perturbed gene identification and sample classification
Q47204760	PIVOT: platform for interactive analysis and visualization of transcriptomics data.
Q34215557	PIWI proteins are dispensable for mouse somatic development and reprogramming of fibroblasts into pluripotent stem cells
Q30886966	PLNseq: a multivariate Poisson lognormal distribution for high-throughput matched RNA-sequencing read count data
Q28260529	POLE Proofreading Mutations Elicit an Antitumor Immune Response in Endometrial Cancer
Q35837738	PPAR-α and glucocorticoid receptor synergize to promote erythroid progenitor self-renewal
Q36251178	PRC2 Represses Hormone-Induced Somatic Embryogenesis in Vegetative Tissue of Arabidopsis thaliana.
Q38954754	PRC2 is recurrently inactivated through EED or SUZ12 loss in malignant peripheral nerve sheath tumors.
Q39431260	PRC2 preserves intestinal progenitors and restricts secretory lineage commitment.
Q92479395	PRC2-Mediated H3K27me3 Contributes to Transcriptional Regulation of FIT-Dependent Iron Deficiency Response
Q96773639	PRC2-mediated H3K27me3 modulates shoot iron homeostasis in Arabidopsis thaliana
Q49912515	PREP1 tumor suppressor protects the late-replicating DNA by controlling its replication timing and symmetry.
Q38928703	PRK1/PKN1 controls migration and metastasis of androgen-independent prostate cancer cells
Q38698803	PRMT1-Mediated Translation Regulation Is a Crucial Vulnerability of Cancer.
Q34880666	PROPER: comprehensive power evaluation for differential expression using RNA-seq
Q58601608	PRY-1/Axin signaling regulates lipid metabolism in Caenorhabditis elegans
Q42374923	Pan-cancer transcriptomic analysis associates long non-coding RNAs with key mutational driver events
Q99635771	Pancreatic and intestinal endocrine cells in zebrafish share common transcriptomic signatures and regulatory programmes
Q48139118	Pancreatic imaging using an antibody fragment targeting the zinc transporter type 8: a direct comparison with radio-iodinated Exendin-4.
Q37733923	Parallel analysis of Arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation
Q34883692	Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets
Q35220036	Parallel epigenomic and transcriptomic responses to viral infection in honey bees (Apis mellifera).
Q35769007	Parallel molecular routes to cold adaptation in eight genera of New Zealand stick insects
Q35172698	Paraoxonase 2 serves a proapopotic function in mouse and human cells in response to the Pseudomonas aeruginosa quorum-sensing molecule N-(3-Oxododecanoyl)-homoserine lactone.
Q36561435	Parkin-mediated mitophagy directs perinatal cardiac metabolic maturation in mice
Q44745584	Parsing parallel evolution: ecological divergence and differential gene expression in the adaptive radiations of thick-lipped Midas cichlid fishes from Nicaragua
Q37747241	Parsing the Regulatory Network between Small RNAs and Target Genes in Ethylene Pathway in Tomato
Q27316015	Paternal poly (ADP-ribose) metabolism modulates retention of inheritable sperm histones and early embryonic gene expression
Q60393884	Paternally expressed imprinted genes associate with hybridization barriers in Capsella
Q38816588	Pathologic features of mycobacteriosis in naturally infected Syngnathidae and novel transcriptome assembly in association with disease.
Q63484960	Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap
Q37577738	Pathway-based network modeling finds hidden genes in shRNA screen for regulators of acute lymphoblastic leukemia
Q42290298	Patterns of Gene Expression in Western Corn Rootworm (Diabrotica virgifera virgifera) Neonates, Challenged with Cry34Ab1, Cry35Ab1 and Cry34/35Ab1, Based on Next-Generation Sequencing
Q91792077	PbGA2ox8 induces vascular-related anthocyanin accumulation and contributes to red stripe formation on pear fruit
Q30828757	PePr: a peak-calling prioritization pipeline to identify consistent or differential peaks from replicated ChIP-Seq data.
Q38776933	Peak-valley-peak pattern of histone modifications delineates active regulatory elements and their directionality
Q50104538	PennDiff: Detecting Differential Alternative Splicing and Transcription by RNA Sequencing.
Q37574150	PennSeq: accurate isoform-specific gene expression quantification in RNA-Seq by modeling non-uniform read distribution
Q48009486	Peptidomimetic inhibitors of APC-Asef interaction block colorectal cancer migration
Q96304609	Performance and Transcriptional Response of the Green Peach Aphid Myzus persicae to the Restriction of Dietary Amino Acids
Q59804292	Pericentromeric hypomethylation elicits an interferon response in an animal model of ICF syndrome
Q40064092	Perilipin-2 modulates dietary fat-induced microbial global gene expression profiles in the mouse intestine
Q38819581	Perinatal Bacterial Exposure Contributes to IL-13 Aeroallergen Response
Q36191888	Periodontal disease and the oral microbiota in new-onset rheumatoid arthritis
Q34283368	Peripheral benzodiazepine receptor/translocator protein global knock-out mice are viable with no effects on steroid hormone biosynthesis.
Q36808636	Peripheral nerve injury is accompanied by chronic transcriptome-wide changes in the mouse prefrontal cortex
Q46978934	Peripheral regulatory T lymphocytes recirculating to the thymus suppress the development of their precursors.
Q38328710	Peroxisome proliferator-activated receptor γ and C/EBPα synergistically activate key metabolic adipocyte genes by assisted loading
Q57485148	Persistent Interactions with Bacterial Symbionts Direct Mature-Host Cell Morphology and Gene Expression in the Squid-Vibrio Symbiosis
Q35195408	Personal genomes, quantitative dynamic omics and personalized medicine
Q35668113	Perturbation of FliL interferes with Proteus mirabilis swarmer cell gene expression and differentiation
Q35125772	Perturbation of parentally biased gene expression during interspecific hybridization
Q38913781	Perturbations of heart development and function in cardiomyocytes from human embryonic stem cells with trisomy 21.
Q42320714	Pervasive translational regulation of the cell signalling circuitry underlies mammalian development
Q102326360	Perversely expressed long noncoding RNAs can alter host response and viral proliferation in SARS-CoV-2 infection
Q47142056	Phage and Nucleocytoplasmic Large Viral Sequences Dominate Coral Viromes from the Arabian Gulf
Q55022817	Phenotypic Variation in Mojave Rattlesnake (Crotalus scutulatus) Venom Is Driven by Four Toxin Families
Q90176115	Phenotypic and Transcriptomic Response of the Grasshopper Oedaleus asiaticus (Orthoptera: Acrididae) to Toxic Rutin
Q64938815	Phenotypical profile and global transcriptomic profile of Hypervirulent Klebsiella pneumoniae due to carbapenemase-encoding plasmid acquisition.
Q33699514	Pheromone independent unisexual development in Cryptococcus neoformans
Q28540347	Phosphoinositide metabolism links cGMP-dependent protein kinase G to essential Ca²⁺ signals at key decision points in the life cycle of malaria parasites
Q33792457	Phosphoprotein SAK1 is a regulator of acclimation to singlet oxygen in Chlamydomonas reinhardtii
Q28552267	Phosphoproteome and Transcriptome of RA-Responsive and RA-Resistant Breast Cancer Cell Lines
Q42777723	Phosphoproteomics reveals that glycogen synthase kinase-3 phosphorylates multiple splicing factors and is associated with alternative splicing
Q33889161	Phosphorylation of Dishevelled by protein kinase RIPK4 regulates Wnt signaling
Q52371966	Phosphotyrosine-Mediated Regulation of Enterohemorrhagic Escherichia coli Virulence.
Q35074884	Photoheterotrophic fluxome in Synechocystis sp. strain PCC 6803 and its implications for cyanobacterial bioenergetics
Q34692435	Phylogenetics and the human microbiome
Q30661155	Phylogenomic distance method for analyzing transcriptome evolution based on RNA-seq data
Q36251314	Physiological Characterization and Comparative Transcriptome Analysis of White and Green Leaves of Ananas comosus var. bracteatus
Q36501886	Physiological Characterization and Comparative Transcriptome Analysis of a Slow-Growing Reduced-Thylakoid Mutant of Chinese Cabbage (Brassica campestris ssp. pekinensis).
Q48278044	Physiological Responses and Gene Co-Expression Network of Mycorrhizal Roots under K+ Deprivation
Q56927719	Physiological and Evolutionary Changes in a Biological Control Agent During Prey Shifts Over Several Generations
Q49567233	Physiological and RNA-seq analyses provide insights into the response mechanism of the Cf-10-mediated resistance to Cladosporium fulvum infection in tomato.
Q90284290	Physiological and Transcriptomic Analysis Reveals Distorted Ion Homeostasis and Responses in the Freshwater Plant Spirodela polyrhiza L. under Salt Stress
Q92216301	Physiological and transcriptomic analyses reveal the molecular networks of responses induced by exogenous trehalose in plant
Q41003886	Physiological roles of sigma factor SigD in Corynebacterium glutamicum
Q64095120	Phytochrome A Regulates Carbon Flux in Dark Grown Tomato Seedlings
Q35969009	Phytophthora infestans Argonaute 1 binds microRNA and small RNAs from effector genes and transposable elements
Q38967689	Phytophthora megakarya and P. palmivora, closely related causal agents of cacao black pod rot, underwent increases in genome sizes and gene numbers by different mechanisms
Q90066731	Pigment variation and transcriptional response of the pigment synthesis pathway in the S2309 triple-color ornamental kale (Brassica oleracea L. var. acephala) line
Q34440901	Pilicide ec240 disrupts virulence circuits in uropathogenic Escherichia coli
Q89622461	Pilot Study to Establish a Novel Five-Gene Biomarker Panel for Predicting Lymph Node Metastasis in Patients With Early Stage Endometrial Cancer
Q93095364	Pinpointing the Genomic Localizations of Chromatin-Associated Proteins: The Yesterday, Today, and Tomorrow of ChIP-seq
Q33767733	PipX, the coactivator of NtcA, is a global regulator in cyanobacteria
Q38661295	PipY, a Member of the Conserved COG0325 Family of PLP-Binding Proteins, Expands the Cyanobacterial Nitrogen Regulatory Network.
Q64252231	Pituitary Transcriptomic Study Reveals the Differential Regulation of lncRNAs and mRNAs Related to Prolificacy in Different FecB Genotyping Sheep
Q93086685	Pituitary cell translation and secretory capacities are enhanced cell autonomously by the transcription factor Creb3l2
Q64119466	Placenta Transcriptome Profiling in Intrauterine Growth Restriction (IUGR)
Q89767681	Placental DNA methylation changes associated with maternal prepregnancy BMI and gestational weight gain
Q36585885	Planar cell polarity-mediated induction of neural stem cell expansion during axolotl spinal cord regeneration
Q44746315	Plant genetics. A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons.
Q30489603	PlantAPA: A Portal for Visualization and Analysis of Alternative Polyadenylation in Plants
Q39557158	Plants Release Precursors of Histone Deacetylase Inhibitors to Suppress Growth of Competitors.
Q61487177	Plasmodium male gametocyte development and transmission are critically regulated by the two putative deadenylases of the CAF1/CCR4/NOT complex
Q60911494	Plasmodium vivax readiness to transmit: implication for malaria eradication
Q92691115	Pluripotency and the origin of animal multicellularity
Q41982963	Pluripotency markers are differentially induced by MEK inhibition in thyroid and melanoma BRAFV600E cell lines.
Q46214573	Pluripotent state transitions coordinate morphogenesis in mouse and human embryos
Q37652657	Pneumococcal prophages are diverse, but not without structure or history
Q40035232	Poisson factor models with applications to non-normalized microRNA profiling
Q40995562	Polyester: simulating RNA-seq datasets with differential transcript expression
Q58091387	Polymicrobial sepsis influences NK-cell-mediated immunity by diminishing NK-cell-intrinsic receptor-mediated effector responses to viral ligands or infections
Q49989942	Polymorphic Human Sulfotransferase 2A1 Mediates the Formation of 25-Hydroxyvitamin D3-3-O-sulfate, A Major Circulating Vitamin D Metabolite in Humans.
Q35835073	Polyploidy can drive rapid adaptation in yeast
Q50773445	Polypyrimidine tract binding protein homologs from Arabidopsis are key regulators of alternative splicing with implications in fundamental developmental processes.
Q31086305	Pooling across cells to normalize single-cell RNA sequencing data with many zero counts.
Q34484178	Population and sex differences in Drosophila melanogaster brain gene expression
Q34590391	Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia
Q36302084	Population transcriptomes reveal synergistic responses of DNA polymorphism and RNA expression to extreme environments on the Qinghai-Tibetan Plateau in a predatory bird
Q38611950	Population transcriptomic characterization of the genetic and expression variation of a candidate progenitor of Miscanthus energy crops
Q36424803	Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation
Q38844561	Population- and individual-specific regulatory variation in Sardinia.
Q34713918	Population- and sex-biased gene expression in the excretion organs of Drosophila melanogaster
Q94512665	Population-Specific Genetic and Expression Differentiation in Europeans
Q34374683	Populus tremula (European aspen) shows no evidence of sexual dimorphism.
Q57441760	Pop’s Pipes: poplar gene expression data analysis pipelines
Q36919083	Possible mechanisms of host resistance to Haemonchus contortus infection in sheep breeds native to the Canary Islands
Q36259620	Post-Translational Dosage Compensation Buffers Genetic Perturbations to Stoichiometry of Protein Complexes
Q37687422	Post-transcriptional regulation of human breast cancer cell proteome by unliganded estrogen receptor β via microRNAs
Q35145466	Post-translational decrease in respiratory chain proteins in the Polg mutator mouse brain
Q36059303	Postnatal β-cell maturation is associated with islet-specific microRNA changes induced by nutrient shifts at weaning
Q55399825	Posttranslational modification of a histone-like protein regulates phenotypic resistance to isoniazid in mycobacteria.
Q84843638	Posttraumatic regeneration involves differential expression of long terminal repeat (LTR) retrotransposons
Q90432827	Potential Mechanisms of AtNPR1 Mediated Resistance against Huanglongbing (HLB) in Citrus
Q91643367	Potential Pathways and Genes Involved in Lac Synthesis and Secretion in Kerria chinensis (Hemiptera: Kerriidae) Based on Transcriptomic Analyses
Q36230692	Potential immunosuppressive effects of Escherichia coli O157:H7 experimental infection on the bovine host.
Q34363862	Power analysis and sample size estimation for RNA-Seq differential expression
Q38729920	Power and sample size calculations for high-throughput sequencing-based experiments.
Q31160218	Powerful differential expression analysis incorporating network topology for next-generation sequencing data.
Q31143693	Practical aspects of gene regulatory inference via conditional inference forests from expression data.
Q21563477	Practical guidelines for the comprehensive analysis of ChIP-seq data
Q42282686	Praja1 E3 ubiquitin ligase promotes skeletal myogenesis through degradation of EZH2 upon p38α activation.
Q37405529	Pre- and Post-Natal Stress Programming: Developmental Exposure to Glucocorticoids Causes Long-Term Brain-Region Specific Changes to Transcriptome in the Precocial Japanese Quail
Q39298859	Preadolescent Adversity Programs a Disrupted Maternal Stress Reactivity in Humans and Mice
Q37688106	Preclinical evaluation of potential therapeutic targets in dedifferentiated liposarcoma.
Q28820791	Precultivation of Bacillus coagulans DSM2314 in the presence of furfural decreases inhibitory effects of lignocellulosic by-products during L(+)-lactic acid fermentation
Q58617963	Predicting bacterial growth conditions from mRNA and protein abundances
Q36263842	Prediction of Poly(A) Sites by Poly(A) Read Mapping
Q58696748	Predictive modeling of miRNA-mediated predisposition to alcohol-related phenotypes in mouse
Q40956900	Preferential epigenetic programming of estrogen response after in utero xenoestrogen (bisphenol-A) exposure
Q41860705	Preferred analysis methods for single genomic regions in RNA sequencing revealed by processing the shape of coverage.
Q47154891	Prep1 prevents premature adipogenesis of mesenchymal progenitors.
Q46261956	Preparing cDNA Libraries from Lytic Phage-Infected Cells for Whole Transcriptome Analysis by RNA-Seq
Q64061602	Prepatterning of caterpillar camouflage is controlled by three homeobox genes: , , and
Q35923655	Prevention of antibiotic-associated metabolic syndrome in mice by intestinal alkaline phosphatase
Q37650770	Primary Cell Culture of Live Neurosurgically Resected Aged Adult Human Brain Cells and Single Cell Transcriptomics
Q30017682	Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis
Q39599213	Prime, Shock, and Kill: Priming CD4 T Cells from HIV Patients with a BCL-2 Antagonist before HIV Reactivation Reduces HIV Reservoir Size
Q34690154	Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial
Q34364353	Prion protein and Shadoo are involved in overlapping embryonic pathways and trophoblastic development
Q93012784	Prioritization of cancer therapeutic targets using CRISPR-Cas9 screens
Q30581638	Probabilistic PCA of censored data: accounting for uncertainties in the visualization of high-throughput single-cell qPCR data
Q28662023	Probing bacterial metabolism during infection using high-resolution transcriptomics
Q33699592	Processing and analyzing ChIP-seq data: from short reads to regulatory interactions
Q30435469	Production of medium chain length polyhydroxyalkanoate in metabolic flux optimized Pseudomonas putida
Q49399603	Production of red-flowered oilseed rape via the ectopic expression of Orychophragmus violaceus OvPAP2.
Q90362237	Profile analysis of circRNAs induced by porcine endemic diarrhea virus infection in porcine intestinal epithelial cells
Q33567669	Profiles of extracellular miRNA in cerebrospinal fluid and serum from patients with Alzheimer's and Parkinson's diseases correlate with disease status and features of pathology
Q37277266	Profiling cancer testis antigens in non-small-cell lung cancer
Q55003571	Profiling expression of coding genes, long noncoding RNA, and circular RNA in lung adenocarcinoma by ribosomal RNA-depleted RNA sequencing.
Q33975418	Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA-Seq procedure.
Q28594351	Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2
Q34524602	Profiling of engineering hotspots identifies an allosteric CRISPR-Cas9 switch
Q35945406	Profiling of the small RNA populations in human testicular germ cell tumors shows global loss of piRNAs
Q27316268	Progesterone receptor modulates ERα action in breast cancer
Q93141448	Prognostic value of Kinesin-4 family genes mRNA expression in early-stage pancreatic ductal adenocarcinoma patients after pancreaticoduodenectomy
Q58763050	Prognostic value of minichromosome maintenance mRNA expression in early-stage pancreatic ductal adenocarcinoma patients after pancreaticoduodenectomy
Q41077638	Progression through mitosis promotes PARP inhibitor-induced cytotoxicity in homologous recombination-deficient cancer cells
Q92289048	Proline improves switchgrass growth and development by reduced lignin biosynthesis
Q34503754	Proline-, glutamic acid-, and leucine-rich protein 1 mediates estrogen rapid signaling and neuroprotection in the brain
Q38713431	Promoter Methylation Modulates Indoleamine 2,3-Dioxygenase 1 Induction by Activated T Cells in Human Breast Cancers.
Q90104049	Promoter hypermethylation of PIWI/piRNA pathway genes associated with diminished pachytene piRNA production in bovine hybrid male sterility
Q42621065	Promoter-level transcriptome in primary lesions of endometrial cancer identified biomarkers associated with lymph node metastasis
Q48248503	Proof of concept studies exploring the safety and functional activity of human parthenogenetic-derived neural stem cells for the treatment of Parkinson's disease
Q93147531	PropaNet: Time-Varying Condition-Specific Transcriptional Network Construction by Network Propagation
Q60044601	Properties of LINE-1 proteins and repeat element expression in the context of amyotrophic lateral sclerosis
Q36286492	Properties of short double-stranded RNAs carrying randomized base pairs: toward better controls for RNAi experiments
Q90929675	Prophages and satellite prophages are widespread in Streptococcus and may play a role in pneumococcal pathogenesis
Q31016898	Proportion statistics to detect differentially expressed genes: a comparison with log-ratio statistics
Q35039110	Prospective identification of parasitic sequences in phage display screens
Q42106785	Prostaglandin E2 glyceryl ester is an endogenous agonist of the nucleotide receptor P2Y6
Q33865658	Prostaglandin E2 is essential for efficacious skeletal muscle stem-cell function, augmenting regeneration and strength
Q34631463	Protection of CpG islands against de novo DNA methylation during oogenesis is associated with the recognition site of E2f1 and E2f2.
Q53699174	Protein Acetylation Mediated by YfiQ and CobB Is Involved in the Virulence and Stress Response of Yersinia pestis.
Q33626256	Protein kinase A regulates gene-specific translational adaptation in differentiating yeast
Q38990941	Protein kinase C is essential for viability of the rice blast fungus Magnaporthe oryzae
Q64074619	Proteins with Evolutionarily Hypervariable Domains are Associated with Immune Response and Better Survival of Basal-like Breast Cancer Patients
Q60907436	Proteo-Transcriptomic Dynamics of Cellular Response to HIV-1 Infection
Q37717517	Proteobacteria explain significant functional variability in the human gut microbiome.
Q28534743	Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass
Q94452068	Proteogenomics analysis unveils a TFG-RET gene fusion and druggable targets in papillary thyroid carcinomas
Q89559145	Proteome and transcriptome profile analysis reveals regulatory and stress-responsive networks in the russet fruit skin of sand pear
Q37125308	Proteome of the nematode-trapping cells of the fungus Monacrosporium haptotylum
Q92860833	Proteomic analyses of Urine Exosomes reveal New Biomarkers of Diabetes in Pregnancy
Q38763952	Proteomic analysis of hair shafts from monozygotic twins: Expression profiles and genetically variant peptides.
Q46305484	Proteomic profiling of Pachyonychia congenita plantar callus
Q40083618	Proteomics informed by transcriptomics for characterising differential cellular susceptibility to Nelson Bay orthoreovirus infection
Q34728865	Proteomics informed by transcriptomics reveals Hendra virus sensitizes bat cells to TRAIL-mediated apoptosis
Q37268211	Proteorhodopsin light-enhanced growth linked to vitamin-B1 acquisition in marine Flavobacteria
Q38855621	Proteotoxic stress reprograms the chromatin landscape of SUMO modification.
Q59790905	Proto-oncogenes in a eukaryotic unicellular organism play essential roles in plasmodial growth in host cells
Q111822857	Protocol for integrative subtyping of lower-grade gliomas using the SUMO pipeline
Q35977326	Proton irradiation induces persistent and tissue-specific DNA methylation changes in the left ventricle and hippocampus
Q38883072	Pseudoalignment for metagenomic read assignment
Q41075944	Pseudomonas aeruginosa ceftolozane-tazobactam resistance development requires multiple mutations leading to overexpression and structural modification of AmpC
Q41013825	PtaRHE1, a Populus tremula × Populus alba RING-H2 protein of the ATL family, has a regulatory role in secondary phloem fibre development.
Q37685858	Pubertal bisphenol A exposure alters murine mammary stem cell function leading to early neoplasia in regenerated glands
Q50421636	Puf3 participates in ribosomal biogenesis in malaria parasites.
Q48156417	Purification of neural precursor cells reveals the presence of distinct, stimulus-specific subpopulations of quiescent precursors in the adult mouse hippocampus
Q27305401	Putative regulatory factors associated with intramuscular fat content
Q28538194	Putative sugar transporters of the mustard leaf beetle Phaedon cochleariae: their phylogeny and role for nutrient supply in larval defensive glands
Q34047461	Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
Q39583009	Pyrosequencing-based transcriptomic resources in the pond snail Lymnaea stagnalis, with a focus on genes involved in molecular response to diquat-induced stress
Q61443532	Pyruvate kinase L/R is a regulator of lipid metabolism and mitochondrial function
Q38599466	QNB: differential RNA methylation analysis for count-based small-sample sequencing data with a quad-negative binomial model
Q90391827	QTL-seq reveals genomic regions associated with spikelet fertility in response to a high temperature in rice (Oryza sativa L.).
Q30981345	QoRTs: a comprehensive toolset for quality control and data processing of RNA-Seq experiments
Q58783573	QsRNA-seq: a method for high-throughput profiling and quantifying small RNAs
Q42696193	QuASAR-MPRA: Accurate allele-specific analysis for massively parallel reporter assays
Q27328830	Quaking promotes monocyte differentiation into pro-atherogenic macrophages by controlling pre-mRNA splicing and gene expression
Q35122217	Quality assessment and control of tissue specific RNA-seq libraries of Drosophila transgenic RNAi models
Q36424844	Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR.
Q35995108	Quantification of Transcriptome Responses of the Rumen Epithelium to Butyrate Infusion using RNA-seq Technology
Q40225257	Quantification of differential gene expression by multiplexed targeted resequencing of cDNA.
Q37687093	Quantification of nucleic acid quality in postmortem tissues from a cancer research autopsy program.
Q43794949	Quantifying the regulatory effect size of cis-acting genetic variation using allelic fold change.
Q27934621	Quantitative BrdU immunoprecipitation method demonstrates that Fkh1 and Fkh2 are rate-limiting activators of replication origins that reprogram replication timing in G1 phase
Q45947934	Quantitative Bromodeoxyuridine Immunoprecipitation Analyzed by High-Throughput Sequencing (qBrdU-Seq or QBU).
Q90162896	Quantitative Multiplexed ChIP Reveals Global Alterations that Shape Promoter Bivalency in Ground State Embryonic Stem Cells
Q58785430	Quantitative RNA-seq Analysis Unveils Osmotic and Thermal Adaptation Mechanisms Relevant for Ectoine Production in
Q42172392	Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome
Q95930780	Quantitative analysis of Y-Chromosome gene expression across 36 human tissues
Q35847532	Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2
Q26852016	Quantitative aspects of RNA silencing in metazoans
Q52584634	Quantitative assessment of protein activity in orphan tissues and single cells using the metaVIPER algorithm.
Q38284619	Quantitative bacterial transcriptomics with RNA-seq
Q34500721	Quantitative group testing-based overlapping pool sequencing to identify rare variant carriers
Q30701832	Quantitative identification of mutant alleles derived from lung cancer in plasma cell-free DNA via anomaly detection using deep sequencing data
Q34331720	Quantitative profiling of Drosophila melanogaster Dscam1 isoforms reveals no changes in splicing after bacterial exposure
Q42021385	Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations
Q88175232	Quantitative single-cell transcriptomics
Q35510689	Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana
Q43213442	QuasR: quantification and annotation of short reads in R.
Q57267520	Queuosine-modified tRNAs confer nutritional control of protein translation
Q30977725	QuickNGS elevates Next-Generation Sequencing data analysis to a new level of automation
Q41830370	Quorum Sensing in a Methane-Oxidizing Bacterium.
Q91955250	RAC1 inhibition reverses cisplatin resistance in esophageal squamous cell carcinoma and induces downregulation of glycolytic enzymes
Q92212867	RADAR: differential analysis of MeRIP-seq data with a random effect model
Q61446621	RAGE is a Critical Mediator of Pulmonary Oxidative Stress, Alveolar Macrophage Activation and Emphysema in Response to Cigarette Smoke
Q97527964	RALF1-FERONIA complex affects splicing dynamics to modulate stress responses and growth in plants
Q35653764	RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application
Q35656768	RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements.
Q90402776	RASflow: an RNA-Seq analysis workflow with Snakemake
Q36002383	RAX2: a genome-wide detection method of condition-associated transcription variation.
Q36231675	RBFOX1 regulates both splicing and transcriptional networks in human neuronal development.
Q33642251	RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE).
Q42778140	REST-Governed Gene Expression Profiling in a Neuronal Cell Model Reveals Novel Direct and Indirect Processes of Repression and Up-Regulation.
Q112728784	RETRACTED ARTICLE:The Arabidopsis NOT4A E3 ligase promotes PGR3 expression and regulates chloroplast translation
Q47095861	RElative QUantitation Inferred by Evaluating Mixtures (REQUIEM).
Q90672269	RIPK1 Mediates TNF-Induced Intestinal Crypt Apoptosis During Chronic NF-κB Activation
Q36783636	RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments
Q28081604	RNA Degradation in Staphylococcus aureus: Diversity of Ribonucleases and Their Impact
Q60961279	RNA Modification Level Estimation with pulseR
Q35882498	RNA Polymerase III Output Is Functionally Linked to tRNA Dimethyl-G26 Modification.
Q38430376	RNA SEQ Analysis Indicates that the AE3 Cl-/HCO3- Exchanger Contributes to Active Transport-Mediated CO2 Disposal in Heart
Q38865585	RNA Seq analysis for transcriptome profiling in response to classical swine fever vaccination in indigenous and crossbred pigs
Q35133018	RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis
Q92493095	RNA Sequencing Analysis of Chicken Cecum Tissues Following Eimeria tenella Infection in Vivo
Q60908279	RNA Sequencing Provides Insights into the Regulation of Solanesol Biosynthesis in Nicotiana tabacum Induced by Moderately High Temperature
Q28602964	RNA Sequencing and Analysis
Q47339198	RNA Sequencing and Analysis in Microorganisms for Metabolic Network Reconstruction.
Q89767256	RNA cargos in extracellular vesicles derived from blood serum in pancreas associated conditions
Q34733741	RNA deep sequencing reveals novel candidate genes and polymorphisms in boar testis and liver tissues with divergent androstenone levels
Q47158316	RNA editing by ADAR1 leads to context-dependent transcriptome-wide changes in RNA secondary structure
Q58698657	RNA editing derived epitopes function as cancer antigens to elicit immune responses
Q48124901	RNA expression profile of calcified bicuspid, tricuspid, and normal human aortic valves by RNA sequencing
Q34257330	RNA expression profiling of human iPSC-derived cardiomyocytes in a cardiac hypertrophy model
Q36880385	RNA interference-induced hepatotoxicity results from loss of the first synthesized isoform of microRNA-122 in mice.
Q60017421	RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome
Q35112125	RNA sequencing analysis and atrial natriuretic peptide production in patients with dilated and ischemic cardiomyopathy
Q39255682	RNA sequencing analysis of human podocytes reveals glucocorticoid regulated gene networks targeting non-immune pathways.
Q30275185	RNA sequencing analysis of the developing chicken retina
Q33556640	RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti
Q33771657	RNA sequencing and transcriptome arrays analyses show opposing results for alternative splicing in patient derived samples
Q35756615	RNA sequencing from human neutrophils reveals distinct transcriptional differences associated with chronic inflammatory states
Q34654752	RNA sequencing identifies specific PIWI-interacting small non-coding RNA expression patterns in breast cancer
Q38694565	RNA sequencing in post-mortem human brains of neuropsychiatric disorders.
Q35559434	RNA sequencing of Populus x canadensis roots identifies key molecular mechanisms underlying physiological adaption to excess zinc
Q37483645	RNA sequencing of chorionic villi from recurrent pregnancy loss patients reveals impaired function of basic nuclear and cellular machinery
Q64103840	RNA sequencing of intestinal mucosa reveals novel pathways functionally linked to celiac disease pathogenesis
Q92488250	RNA sequencing of isolated cell populations expressing human APOL1 G2 risk variant reveals molecular correlates of sickle cell nephropathy in zebrafish podocytes
Q34825616	RNA sequencing of the human milk fat layer transcriptome reveals distinct gene expression profiles at three stages of lactation
Q35896715	RNA sequencing of the nephron transcriptome: a technical note
Q34381656	RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans
Q37545760	RNA sequencing reveals differences between the global transcriptomes of Salmonella enterica serovar enteritidis strains with high and low pathogenicities.
Q42361297	RNA sequencing reveals upregulation of RUNX1-RUNX1T1 gene signatures in clear cell renal cell carcinoma
Q47100213	RNA sequencing uncovers the key microRNAs potentially contributing to sudden sensorineural hearing loss
Q92461206	RNA-Seq Analysis Identified XLOC_009190 as Potential Therapeutic Target for Lung Adenocarcinoma
Q33679301	RNA-Seq Analysis of Diverse Rice Genotypes to Identify the Genes Controlling Coleoptile Growth during Submerged Germination.
Q36387573	RNA-Seq Analysis of Rice Roots Reveals the Involvement of Post-Transcriptional Regulation in Response to Cadmium Stress
Q35762356	RNA-Seq Analysis of the Expression of Genes Encoding Cell Wall Degrading Enzymes during Infection of Lupin (Lupinus angustifolius) by Phytophthora parasitica
Q35526164	RNA-Seq Analysis of the Host Response to Staphylococcus aureus Skin and Soft Tissue Infection in a Mouse Model
Q30250975	RNA-Seq Comparison of Larval and Adult Malpighian Tubules of the Yellow Fever Mosquito Aedes aegypti Reveals Life Stage-Specific Changes in Renal Function
Q31139217	RNA-Seq Count Data Modelling by Grey Relational Analysis and Nonparametric Gaussian Process
Q27315803	RNA-Seq Differentiates Tumour and Host mRNA Expression Changes Induced by Treatment of Human Tumour Xenografts with the VEGFR Tyrosine Kinase Inhibitor Cediranib
Q31026450	RNA-Seq Experiment and Data Analysis.
Q33774885	RNA-Seq Reveals Enhanced Sugar Metabolism in Streptococcus mutans Co-cultured with Candida albicans within Mixed-Species Biofilms
Q61799219	RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types
Q48266943	RNA-Seq analysis and comparison of corneal epithelium in keratoconus and myopia patients.
Q34041397	RNA-Seq analysis in MeV.
Q36050665	RNA-Seq analysis of Gtf2ird1 knockout epidermal tissue provides potential insights into molecular mechanisms underpinning Williams-Beuren syndrome
Q93006124	RNA-Seq analysis of gene expression changes triggered by Xanthomonas oryzae pv. oryzae in a susceptible rice genotype
Q52565481	RNA-Seq analysis of interferon inducible p204-mediated network in anti-tumor immunity.
Q35726897	RNA-Seq analysis of isolate- and growth phase-specific differences in the global transcriptomes of enteropathogenic Escherichia coli prototype isolates
Q41505241	RNA-Seq analysis of rye-grass transcriptomic response to an herbicide inhibiting acetolactate-synthase identifies transcripts linked to non-target-site-based resistance.
Q35243430	RNA-Seq analysis of the multipartite genome of Rhizobium etli CE3 shows different replicon contributions under heat and saline shock.
Q38613312	RNA-Seq analysis on chicken taste sensory organs: An ideal system to study organogenesis
Q35232930	RNA-Seq analysis reveals a six-gene SoxR regulon in Streptomyces coelicolor
Q52615500	RNA-Seq analysis validates the use of culture-derived Trypanosoma brucei and provides new markers for mammalian and insect life-cycle stages.
Q35899774	RNA-Seq and Gene Network Analysis Uncover Activation of an ABA-Dependent Signalosome During the Cork Oak Root Response to Drought
Q36911072	RNA-Seq and iTRAQ Reveal the Dwarfing Mechanism of Dwarf Polish Wheat (Triticum polonicum L.).
Q39435103	RNA-Seq as a Tool to Study the Tumor Microenvironment
Q47267623	RNA-Seq differential expression analysis: An extended review and a software tool
Q34975585	RNA-Seq effectively monitors gene expression in Eutrema salsugineum plants growing in an extreme natural habitat and in controlled growth cabinet conditions.
Q37590464	RNA-Seq for Plant Pathogenic Bacteria
Q36153900	RNA-Seq of Borrelia burgdorferi in Multiple Phases of Growth Reveals Insights into the Dynamics of Gene Expression, Transcriptome Architecture, and Noncoding RNAs
Q34510318	RNA-Seq of human breast ductal carcinoma in situ models reveals aldehyde dehydrogenase isoform 5A1 as a novel potential target
Q42625121	RNA-Seq of the xylose-fermenting yeast Scheffersomyces stipitis cultivated in glucose or xylose
Q33609987	RNA-Seq profiling of a defective seed coat mutation in Glycine max reveals differential expression of proline-rich and other cell wall protein transcripts
Q35538309	RNA-Seq profiling of single bovine oocyte transcript abundance and its modulation by cytoplasmic polyadenylation
Q27324185	RNA-Seq profiling reveals novel hepatic gene expression pattern in aflatoxin B1 treated rats
Q99614367	RNA-Seq profiling reveals the plant hormones and molecular mechanisms stimulating the early ripening in apple
Q31112344	RNA-Seq revealed the impairment of immune defence of tilapia against the infection of Streptococcus agalactiae with simulated climate warming
Q34064894	RNA-Seq reveals an integrated immune response in nucleated erythrocytes.
Q34413238	RNA-Seq reveals complex genetic response to Deepwater Horizon oil release in Fundulus grandis
Q89599496	RNA-Seq reveals differential expression profiles and functional annotation of genes involved in retinal degeneration in Pde6c mutant Danio rerio
Q26825688	RNA-Seq technology and its application in fish transcriptomics
Q91595080	RNA-Seq transcriptome profiling in three liver regeneration models in rats: comparative analysis of partial hepatectomy, ALLPS, and PVL
Q35064265	RNA-Seq transcriptome profiling of upland cotton (Gossypium hirsutum L.) root tissue under water-deficit stress
Q35626105	RNA-Seq versus oligonucleotide array assessment of dose-dependent TCDD-elicited hepatic gene expression in mice
Q30582276	RNA-Seq vs dual- and single-channel microarray data: sensitivity analysis for differential expression and clustering
Q40204689	RNA-Seq workflow: gene-level exploratory analysis and differential expression
Q35131150	RNA-Seq-based analysis of cold shock response in Thermoanaerobacter tengcongensis, a bacterium harboring a single cold shock protein encoding gene
Q41296747	RNA-Seq-based analysis of the physiologic cold shock-induced changes in Moraxella catarrhalis gene expression
Q33993574	RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression.
Q38470016	RNA-Seq-based transcriptome profiling of early nitrogen deficiency response in cucumber seedlings provides new insight into the putative nitrogen regulatory network.
Q35568660	RNA-Seq: Improving Our Understanding of Retinal Biology and Disease
Q64251603	RNA-Sequencing, Physiological and RNAi Analyses Provide Insights into the Response Mechanism of the -Mediated Resistance to Infection in Cotton
Q43410195	RNA-binding protein QKI regulates Glial fibrillary acidic protein expression in human astrocytes
Q28507888	RNA-binding proteins ZFP36L1 and ZFP36L2 promote cell quiescence
Q36331974	RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome
Q48146856	RNA-directed DNA methylation involves co-transcriptional small-RNA-guided slicing of polymerase V transcripts in Arabidopsis.
Q28295458	RNA-guided gene activation by CRISPR-Cas9-based transcription factors
Q52431912	RNA-guided transcriptional silencing in vivo with S. aureus CRISPR-Cas9 repressors.
Q30856802	RNA-seq Data: Challenges in and Recommendations for Experimental Design and Analysis
Q50945401	RNA-seq Reveals Transcriptomic Differences in Inflamed and Noninflamed Intestinal Mucosa of Crohn's Disease Patients Compared with Normal Mucosa of Healthy Controls.
Q52581831	RNA-seq Reveals the Overexpression of IGSF9 in Endometrial Cancer.
Q39670571	RNA-seq analyses reveal insights into the function of respiratory nitrate reductase of the diazotroph Herbaspirillum seropedicae.
Q59280342	RNA-seq analysis in forest tree species: bioinformatic problems and solutions
Q33360947	RNA-seq analysis of an apical meristem time series reveals a critical point in Arabidopsis thaliana flower initiation
Q38292856	RNA-seq analysis of developing olfactory bulb projection neurons
Q34274259	RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance
Q35099579	RNA-seq analysis of early hepatic response to handling and confinement stress in rainbow trout
Q36110900	RNA-seq analysis of glycosylation related gene expression in STZ-induced diabetic rat kidney inner medulla
Q35948194	RNA-seq analysis of the Rhizobium tropici CIAT 899 transcriptome shows similarities in the activation patterns of symbiotic genes in the presence of apigenin and salt
Q35183286	RNA-seq analysis of the influence of anaerobiosis and FNR on Shigella flexneri
Q35565911	RNA-seq analysis of the response of the halophyte, Mesembryanthemum crystallinum (ice plant) to high salinity
Q35106310	RNA-seq analysis of transcriptome and glucosinolate metabolism in seeds and sprouts of broccoli (Brassica oleracea var. italic)
Q47629167	RNA-seq analysis provides insight into reprogramming of culm development in Zizania latifolia induced by Ustilago esculenta.
Q35103091	RNA-seq analysis revealed novel genes and signaling pathway associated with disease resistance to avian influenza virus infection in chickens
Q30641144	RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species
Q34786493	RNA-seq analysis reveals significant effects of EGFR signalling on the secretome of mesenchymal stem cells.
Q92282494	RNA-seq and ChIP-seq as Complementary Approaches for Comprehension of Plant Transcriptional Regulatory Mechanism
Q34478275	RNA-seq and microarray complement each other in transcriptome profiling.
Q27025637	RNA-seq as a powerful tool for penaeid shrimp genetic progress
Q36588399	RNA-seq based identification and mutant validation of gene targets related to ethanol resistance in cyanobacterial Synechocystis sp. PCC 6803.
Q37397397	RNA-seq based transcriptomic analysis uncovers α-linolenic acid and jasmonic acid biosynthesis pathways respond to cold acclimation in Camellia japonica
Q90748368	RNA-seq data of soleus muscle tissue after spinal cord injury under conditions of inactivity and applied exercise
Q36275155	RNA-seq de novo Assembly Reveals Differential Gene Expression in Glossina palpalis gambiensis Infected with Trypanosoma brucei gambiense vs. Non-Infected and Self-Cured Flies
Q37523925	RNA-seq differential expression studies: more sequence or more replication?
Q37653946	RNA-seq for comparative transcript profiling of kenaf under salinity stress
Q34781501	RNA-seq in the tetraploid Xenopus laevis enables genome-wide insight in a classic developmental biology model organism
Q34340482	RNA-seq liver transcriptome analysis reveals an activated MHC-I pathway and an inhibited MHC-II pathway at the early stage of vaccine immunization in zebrafish
Q33558353	RNA-seq mixology: designing realistic control experiments to compare protocols and analysis methods
Q35054098	RNA-seq profiles of immune related genes in the staghorn coral Acropora cervicornis infected with white band disease
Q46176910	RNA-seq reveals regional differences in transcriptome response to heat stress in the marine snail Chlorostoma funebralis
Q33715562	RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux in Serratia sp. ATCC 39006.
Q46243879	RNA-seq reveals transcriptome changes in goats following myostatin gene knockout.
Q36058271	RNA-seq studies using wheat PHYTOCHROME B and PHYTOCHROME C mutants reveal shared and specific functions in the regulation of flowering and shade-avoidance pathways
Q28710501	RNA-seq transcriptome analysis of male and female zebra finch cell lines
Q35618041	RNA-seq transcriptome profiling of equine inner cell mass and trophectoderm
Q33924548	RNA-seq: technical variability and sampling.
Q33758739	RNA-sequencing Identifies Novel Pathways in Sarcoidosis Monocytes
Q64066402	RNA-sequencing data highlighting the time-of-day-dependent transcriptome of the central circadian pacemaker in -deficient mice
Q42777412	RNA-sequencing dissects the transcriptome of polyploid cancer cells that are resistant to combined treatments of cisplatin with paclitaxel and docetaxel.
Q64091356	RNA-sequencing in ophthalmology research: considerations for experimental design and analysis
Q37577398	RNA-sequencing of a mouse-model of spinal muscular atrophy reveals tissue-wide changes in splicing of U12-dependent introns
Q38481283	RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms and GTPase binding in bipolar disorder
Q34579107	RNA-sequencing reveals early, dynamic transcriptome changes in the corollas of pollinated petunias
Q38954496	RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger
Q35860638	RNASEQR--a streamlined and accurate RNA-seq sequence analysis program
Q35907330	RNASeq Based Transcriptional Profiling of Pseudomonas aeruginosa PA14 after Short- and Long-Term Anoxic Cultivation in Synthetic Cystic Fibrosis Sputum Medium
Q41918717	RNASeq analysis of differentiated keratinocytes reveals a massive response to late events during human papillomavirus type 16 infection, including loss of epithelial barrier function
Q30822023	RNASeqExpressionBrowser--a web interface to browse and visualize high-throughput expression data.
Q30817510	RNASeqGUI: a GUI for analysing RNA-Seq data
Q38268543	RNAi in the mouse: rapid and affordable gene function studies in a vertebrate system
Q37174807	RNAi screens in mice identify physiological regulators of oncogenic growth
Q36020652	RNAontheBENCH: computational and empirical resources for benchmarking RNAseq quantification and differential expression methods
Q92072660	RNAseq Analysis of the Response of Arabidopsis thaliana to Fractional Gravity Under Blue-Light Stimulation During Spaceflight
Q35728231	RNAseq analysis of fast skeletal muscle in restriction-fed transgenic coho salmon (Oncorhynchus kisutch): an experimental model uncoupling the growth hormone and nutritional signals regulating growth
Q55422256	RNAseq analysis of hippocampal microglia after kainic acid-induced seizures.
Q33799171	RNAseq based transcriptomics study of SMCs from carotid atherosclerotic plaque: BMP2 and IDs proteins are crucial regulators of plaque stability.
Q35761436	RNAseq expression analysis of resistant and susceptible mice after influenza A virus infection identifies novel genes associated with virus replication and important for host resistance to infection
Q34421619	RNAseqPS: A Web Tool for Estimating Sample Size and Power for RNAseq Experiment.
Q54977727	RNA‑sequencing analysis of aberrantly expressed long non‑coding RNAs and mRNAs in a mouse model of ventilator‑induced lung injury.
Q35879051	RNF17 blocks promiscuous activity of PIWI proteins in mouse testes
Q36791586	RNase J depletion leads to massive changes in mRNA abundance in Helicobacter pylori.
Q47826127	RNentropy: an entropy-based tool for the detection of significant variation of gene expression across multiple RNA-Seq experiments.
Q38685125	ROC Curve Analysis in the Presence of Imperfect Reference Standards
Q34990555	ROCK1 is a potential combinatorial drug target for BRAF mutant melanoma
Q99603542	ROS producing immature neutrophils in Giant Cell Arteritis are linked to vascular pathologies
Q36380107	ROTS: An R package for reproducibility-optimized statistical testing
Q41491896	ROTS: reproducible RNA-seq biomarker detector-prognostic markers for clear cell renal cell cancer
Q38438530	RP1-13D10.2 Is a Novel Modulator of Statin-Induced Changes in Cholesterol.
Q29547458	RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Q56894370	RSEQREP: RNA-Seq Reports, an open-source cloud-enabled framework for reproducible RNA-Seq data processing, analysis, and result reporting
Q92913626	RST1 and RIPR connect the cytosolic RNA exosome to the Ski complex in Arabidopsis
Q64917354	RabGTD: a comprehensive database of rabbit genome and transcriptome.
Q92538759	Rainbow Trout IgM+ B Cells Preferentially Respond to Thymus-Independent Antigens but Are Activated by CD40L
Q30952601	Rapid Acclimation Ability Mediated by Transcriptome Changes in Reef-Building Corals
Q40051947	Rapid Evolution of Ovarian-Biased Genes in the Yellow Fever Mosquito (Aedes aegypti).
Q64073716	Rapid activation of epithelial-mesenchymal transition drives PARP inhibitor resistance in -mutant mammary tumours
Q36089164	Rapid construction of metabolite biosensors using domain-insertion profiling
Q33784954	Rapid evolution of phenotypic plasticity and shifting thresholds of genetic assimilation in the nematode Caenorhabditis remanei
Q89116419	Rapid magnetic isolation of extracellular vesicles via lipid-based nanoprobes
Q36211819	Rapid phosphoproteomic and transcriptomic changes in the rhizobia-legume symbiosis
Q42322073	Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
Q36370953	Rapid, broad-scale gene expression evolution in experimentally harvested fish populations
Q92681347	Rare De Novo Missense Variants in RNA Helicase DDX6 Cause Intellectual Disability and Dysmorphic Features and Lead to P-Body Defects and RNA Dysregulation
Q59807044	Rare Earth Elements Alter Redox Balance in 20Z
Q37018247	Rat retinal transcriptome: effects of aging and AMD-like retinopathy
Q92085321	Rate of Progression through a Continuum of Transit-Amplifying Progenitor Cell States Regulates Blood Cell Production
Q30537392	Rate of environmental change determines stress response specificity.
Q61448015	Rbf Activates the Myogenic Transcriptional Program to Promote Skeletal Muscle Differentiation
Q64067672	Rbpj expression in regulatory T cells is critical for restraining T2 responses
Q34443884	Rcount: simple and flexible RNA-Seq read counting.
Q33618841	Re-expression of miR-200c suppresses proliferation, colony formation and in vivo tumor growth of murine claudin-low mammary tumor cells.
Q64089802	Reactivation of nonsense-mediated mRNA decay protects against C9orf72 dipeptide-repeat neurotoxicity
Q39331856	ReadXplorer 2-detailed read mapping analysis and visualization from one single source.
Q42260590	ReadXplorer--visualization and analysis of mapped sequences
Q91994981	Reanalysing genomic data by normalized coverage values uncovers CNVs in bone marrow failure gene panels
Q33812762	Reconstructing cell cycle pseudo time-series via single-cell transcriptome data
Q37005470	Reconstructing the temporal progression of HIV-1 immune response pathways
Q36766755	Reconstruction and applications of consensus yeast metabolic network based on RNA sequencing
Q33799624	Reconstruction of pathway modification induced by nicotinamide using multi-omic network analyses in triple negative breast cancer
Q47244024	Recovery from N Deprivation Is a Transcriptionally and Functionally Distinct State in Chlamydomonas
Q42111566	Recruitment of the ATP-dependent chromatin remodeler dMi-2 to the transcribed region of active heat shock genes
Q91890041	Rectal Microbiome Composition Correlates with Humoral Immunity to HIV-1 in Vaccinated Rhesus Macaques
Q36066707	Recurrent Mutations in the Basic Domain of TWIST2 Cause Ablepharon Macrostomia and Barber-Say Syndromes
Q36949683	Recurrent R-spondin fusions in colon cancer
Q27851991	Recurrent SETBP1 mutations in atypical chronic myeloid leukemia
Q41433189	Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements
Q97069761	Recursive Consensus Clustering for novel subtype discovery from transcriptome data
Q27316614	Recursive splicing in long vertebrate genes
Q36519585	Reduced CYFIP1 in Human Neural Progenitors Results in Dysregulation of Schizophrenia and Epilepsy Gene Networks
Q45131876	Reduced Intracellular c-di-GMP Content Increases Expression of Quorum Sensing-Regulated Genes in Pseudomonas aeruginosa
Q91049292	Reduced MEK inhibition preserves genomic stability in naive human embryonic stem cells
Q54969437	Reducing Pericyte-Derived Scarring Promotes Recovery after Spinal Cord Injury.
Q36320248	RefBool: a reference-based algorithm for discretizing gene expression data.
Q55645537	Refining a steroidogenic model: an analysis of RNA-seq datasets from insect prothoracic glands.
Q36324704	Regression Models For Multivariate Count Data
Q37408606	Regulated aggregative multicellularity in a close unicellular relative of metazoa
Q54998052	Regulation Mechanism Mediated by Trans-Encoded sRNA Nc117 in Short Chain Alcohols Tolerance in Synechocystis sp. PCC 6803.
Q42777824	Regulation of Chromatin Assembly and Cell Transformation by Formaldehyde Exposure in Human Cells
Q52803636	Regulation of Flagellum Biosynthesis in Response to Cell Envelope Stress in Salmonella enterica Serovar Typhimurium.
Q52568649	Regulation of Global Transcription in Escherichia coli by Rsd and 6S RNA.
Q64061683	Regulation of Intronic Polyadenylation by PCF11 Impacts mRNA Expression of Long Genes
Q34998731	Regulation of Zn and Fe transporters by the GPC1 gene during early wheat monocarpic senescence
Q35554639	Regulation of chromatin accessibility and Zic binding at enhancers in the developing cerebellum
Q43243492	Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5' splice site strength
Q35486470	Regulation of early T-lineage gene expression and developmental progression by the progenitor cell transcription factor PU.1.
Q89790066	Regulation of gene expression during the fasting-feeding cycle of the liver displays mouse strain specificity
Q36070422	Regulation of gene expression dynamics during developmental transitions by the Ikaros transcription factor.
Q36003943	Regulation of gene expression in the bovine blastocyst by colony stimulating factor 2.
Q39308793	Regulation of growth-defense balance by the JASMONATE ZIM-DOMAIN (JAZ)-MYC transcriptional module
Q45984129	Regulation of mitochondrial biogenesis in erythropoiesis by mTORC1-mediated protein translation.
Q37735511	Regulation of nucleosome positioning by a CHD Type III chromatin remodeler and its relationship to developmental gene expression in Dictyostelium
Q34115579	Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis.
Q34979362	Regulation of sulphur assimilation is essential for virulence and affects iron homeostasis of the human-pathogenic mould Aspergillus fumigatus.
Q36068080	Regulation of the BMP Signaling-Responsive Transcriptional Network in the Drosophila Embryo
Q35556982	Regulation of toll-like receptor signaling by the SF3a mRNA splicing complex.
Q38804041	RegulatorTrail: a web service for the identification of key transcriptional regulators
Q44479151	Regulatory T Cells in Skin Facilitate Epithelial Stem Cell Differentiation.
Q35569848	Regulatory divergence between parental alleles determines gene expression patterns in hybrids
Q47422641	Regulatory effects of antitumor agent matrine on FOXO and PI3K-AKT pathway in castration-resistant prostate cancer cells
Q90329836	Regulatory interaction between the ZPBP2-ORMDL3/Zpbp2-Ormdl3 region and the circadian clock
Q30607094	Regulatory interplay between soybean root and soybean cyst nematode during a resistant and susceptible reaction
Q37612577	Regulatory module involving FGF13, miR-504, and p53 regulates ribosomal biogenesis and supports cancer cell survival
Q36756638	Regulatory role of glycerol in Candida albicans biofilm formation.
Q57054631	Reinstating plasticity and memory in a tauopathy mouse model with an acetyltransferase activator
Q34001429	Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions
Q30965534	Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research
Q47134262	Relation between NOD2 genotype and changes in innate signaling in Crohn's disease on mRNA and miRNA levels
Q54264663	Relative Abundance of Integrant-Derived Viral RNAs in Infected Tissues Harvested from Chronic Hepatitis B Virus Carriers.
Q30715874	ReliefSeq: a gene-wise adaptive-K nearest-neighbor feature selection tool for finding gene-gene interactions and main effects in mRNA-Seq gene expression data
Q30872820	Relocation, high-latitude warming and host genetic identity shape the foliar fungal microbiome of poplars
Q28652038	Remodeling of intermediate metabolism in the diatom Phaeodactylum tricornutum under nitrogen stress
Q42774073	Remodeling of membrane lipids in iron-starved Chlamydomonas
Q33799121	Remodeling of the cycling transcriptome of the oyster Crassostrea gigas by the harmful algae Alexandrium minutum.
Q34143874	Removing technical variability in RNA-seq data using conditional quantile normalization
Q48181652	Repair of DNA Damage Induced by the Cytidine Analog Zebularine Requires ATR and ATM in Arabidopsis
Q37310856	Repeatability of cortisol stress response in the European sea bass (Dicentrarchus labrax) and transcription differences between individuals with divergent responses
Q38715333	Repetitive element transcripts are elevated in the brain of C9orf72 ALS/FTLD patients
Q36949200	Replicates, Read Numbers, and Other Important Experimental Design Considerations for Microbial RNA-seq Identified Using Bacillus thuringiensis Datasets
Q64389337	Replication Stress Drives Constitutive Activation of the DNA Damage Response and Radioresistance in Glioblastoma Stem-like Cells
Q46290789	Repression of TERMINAL FLOWER1 primarily mediates floral induction in pear (Pyrus pyrifolia Nakai) concomitant with change in gene expression of plant hormone-related genes and transcription factors.
Q37346990	Repression of p63 and induction of EMT by mutant Ras in mammary epithelial cells
Q89495316	Reproducibility of Methods to Detect Differentially Expressed Genes from Single-Cell RNA Sequencing
Q42695276	Reproducible Bioconductor workflows using browser-based interactive notebooks and containers.
Q38770137	Reproducible pharmacogenomic profiling of cancer cell line panels.
Q40328501	Reproductive toxicity of low level bisphenol A exposures in a two-generation zebrafish assay: Evidence of male-specific effects.
Q90544644	Reproductive tract extracellular vesicles are sufficient to transmit intergenerational stress and program neurodevelopment
Q41013101	Reproductive workers show queenlike gene expression in an intermediately eusocial insect, the buff-tailed bumble bee Bombus terrestris.
Q46246389	Reprogramming of a defense signaling pathway in rough lemon and sweet orange is a critical element of the early response to 'Candidatus Liberibacter asiaticus'.
Q34540460	Reptile Pregnancy Is Underpinned by Complex Changes in Uterine Gene Expression: A Comparative Analysis of the Uterine Transcriptome in Viviparous and Oviparous Lizards
Q60301959	Repurposing the anticancer drug cisplatin with the aim of developing novel infection control agents
Q52603858	Repurposing tofacitinib as an anti-myeloma therapeutic to reverse growth-promoting effects of the bone marrow microenvironment.
Q28541119	Requirements for Pseudomonas aeruginosa acute burn and chronic surgical wound infection
Q33977389	Research resource: Aorta- and liver-specific ERα-binding patterns and gene regulation by estrogen
Q34295514	Research resource: RNA-Seq reveals unique features of the pancreatic β-cell transcriptome.
Q37207621	Research resource: global identification of estrogen receptor β target genes in triple negative breast cancer cells
Q36210990	Research resource: whole transcriptome RNA sequencing detects multiple 1α,25-dihydroxyvitamin D(3)-sensitive metabolic pathways in developing zebrafish
Q34173263	Resetting transcription factor control circuitry toward ground-state pluripotency in human
Q39302354	Resilience, Dynamics, and Interactions within a Model Multispecies Exoelectrogenic-Biofilm Community.
Q47106308	Resistant and susceptible responses in alfalfa (Medicago sativa) to bacterial stem blight caused by Pseudomonas syringae pv. syringae.
Q50453578	Resolving Heart Regeneration by Replacement Histone Profiling.
Q34466878	Resolving candidate genes of mouse skeletal muscle QTL via RNA-Seq and expression network analyses
Q42416456	Resolving early mesoderm diversification through single-cell expression profiling
Q36282833	Resolving host-pathogen interactions by dual RNA-seq
Q36742802	Resources for methylome analysis suitable for gene knockout studies of potential epigenome modifiers
Q47555719	Respiratory Syncytial Virus Infection Changes Cargo Composition of Exosome Released from Airway Epithelial Cells
Q34984150	Response of Burkholderia cenocepacia H111 to micro-oxia.
Q34279837	Response of sunflower (Helianthus annuus L.) leaf surface defenses to exogenous methyl jasmonate
Q33825600	Response of the hepatic transcriptome to aflatoxin B1 in domestic turkey (Meleagris gallopavo).
Q57140436	Responses of arbuscular mycorrhizal fungi to long-term inorganic and organic nutrient addition in a lowland tropical forest
Q36622992	Responses of microbial community from tropical pristine coastal soil to crude oil contamination
Q57454257	Resting cells rely on the DNA helicase component MCM2 to build cilia
Q44800085	Restoring polyamines protects from age-induced memory impairment in an autophagy-dependent manner
Q47101745	Restricted Presence of POU6F2 in Human Corneal Endothelial Cells Uncovered by Extension of the Promoter-level Expression Atlas
Q37565800	Retinoic Acid Excess Impairs Amelogenesis Inducing Enamel Defects.
Q36122250	Retinoic acid receptors recognize the mouse genome through binding elements with diverse spacing and topology.
Q49982092	Retinoic acid signaling promotes the cytoskeletal rearrangement of embryonic epicardial cells.
Q35905662	Retracted: Virulent Diuraphis noxia Aphids Over-Express Calcium Signaling Proteins to Overcome Defenses of Aphid-Resistant Wheat Plants
Q60915483	Retrospective application of transposon-directed insertion-site sequencing to investigate niche-specific virulence of Salmonella Typhimurium in cattle
Q36310409	Retrotransposon activation contributes to neurodegeneration in a Drosophila TDP-43 model of ALS
Q58788860	Revealing a human p53 universe
Q91330166	Revealing dynamics of gene expression variability in cell state space
Q99556477	Revealing the full-length transcriptome of caucasian clover rhizome development
Q39002947	Revealing the vectors of cellular identity with single-cell genomics
Q48139075	Reversal of Pathologic Lipid Accumulation in NPC1-Deficient Neurons by Drug-Promoted Release of LAMP1-Coated Lamellar Inclusions
Q33903831	Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets
Q27314897	Reversal of phenotypes in MECP2 duplication mice using genetic rescue or antisense oligonucleotides
Q91818410	Review: The application of omics to rumen microbiota function
Q38908007	Rewired metabolism in drug-resistant leukemia cells: a metabolic switch hallmarked by reduced dependence on exogenous glutamine
Q37502046	Rewiring of jasmonate and phytochrome B signalling uncouples plant growth-defense tradeoffs.
Q91904097	Rgnef promotes ovarian tumor progression and confers protection from oxidative stress
Q90539635	Rhizophagus intraradices promotes alfalfa (Medicago sativa) defense against pea aphids (Acyrthosiphon pisum) revealed by RNA-Seq analysis
Q60959973	Rhizosphere Microbial Communities of and From Restored and Natural Tidal Marshes on Deer Island, Mississippi
Q39526299	Rho-actin signaling to the MRTF coactivators dominates the immediate transcriptional response to serum in fibroblasts
Q57025385	Rhomboid domain-containing protein 1 promotes breast cancer progression by regulating the p-Akt and CDK2 levels
Q47222307	Ribosomal Protein S6 Phosphorylation Is Involved in Novelty-Induced Locomotion, Synaptic Plasticity and mRNA Translation
Q102053930	Ribosomal protein S7 ubiquitination during ER stress in yeast is associated with selective mRNA translation and stress outcome
Q34037553	Ribosome profiling reveals a cell-type-specific translational landscape in brain tumors
Q36333697	Ribosome profiling reveals an important role for translational control in circadian gene expression
Q54998021	Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development.
Q35657067	Ribosome profiling reveals translation control as a key mechanism generating differential gene expression in Trypanosoma cruzi
Q44759418	Ribosome profiling: new views of translation, from single codons to genome scale
Q60909681	Rice Overexpressing Reveals Differential Gene Expression Leading to Yield Loss Reduction after Salt Stress at the Booting Stage
Q35517383	Right ventricular long noncoding RNA expression in human heart failure
Q38466312	Right ventricular myocardial biomarkers in human heart failure
Q58788841	Risk assessment model constructed by differentially expressed lncRNAs for the prognosis of glioma
Q55273810	RnaSeqSampleSize: real data based sample size estimation for RNA sequencing.
Q36088542	RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
Q36228835	Robust differential expression analysis by learning discriminant boundary in multi-dimensional space of statistical attributes.
Q91604839	Robust effect of metabolic syndrome on major metabolic pathways in the myocardium
Q91397449	Robust identification of differentially expressed genes from RNA-seq data
Q98170847	Robust intrathymic development of regulatory T cells in young NOD mice is rapidly restrained by recirculating cells
Q47558633	Robust phenotype prediction from gene expression data using differential shrinkage of co-regulated genes
Q30806054	Robustly detecting differential expression in RNA sequencing data using observation weights
Q37099012	Rocaglates convert DEAD-box protein eIF4A into a sequence-selective translational repressor
Q36580534	Role of Cytochrome P450 Hydroxylase in the Decreased Accumulation of Vitamin E in Muscle from Turkeys Compared to that from Chickens.
Q55219432	Role of DNA methylation in the dietary restriction mediated cellular memory.
Q64249462	Role of Dusp6 Phosphatase as a Tumor Suppressor in Non-Small Cell Lung Cancer
Q90531521	Role of a cotton endoreduplication-related gene, GaTOP6B, in response to drought stress
Q33365612	Role of cleavage and polyadenylation specificity factor 100: anchoring poly(A) sites and modulating transcription termination.
Q24490066	Role of oxygen and the OxyR protein in the response to iron limitation in Rhodobacter sphaeroides
Q30582056	Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide
Q41879671	Root ethylene signalling is involved in Miscanthus sinensis growth promotion by the bacterial endophyte Herbaspirillum frisingense GSF30(T)
Q90282211	Root transcriptome reveals efficient cell signaling and energy conservation key to aluminum toxicity tolerance in acidic soil adapted rice genotype
Q87893417	Root transcripts associated with arsenic accumulation in hyperaccumulator Pteris vittata
Q33973293	RseqFlow: workflows for RNA-Seq data analysis
Q36080599	RsmW, Pseudomonas aeruginosa small non-coding RsmA-binding RNA upregulated in biofilm versus planktonic growth conditions
Q38701806	Rv3852 (H-NS) of Mycobacterium tuberculosis Is Not Involved in Nucleoid Compaction and Virulence Regulation
Q92627468	S-Adenosylmethionine Affects Cell Cycle Pathways and Suppresses Proliferation in Liver Cells
Q30368627	S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation.
Q42774081	SAMstrt: statistical test for differential expression in single-cell transcriptome with spike-in normalization
Q52622087	SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data.
Q31106793	SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data
Q28727279	SAVoR: a server for sequencing annotation and visualization of RNA structures
Q35338785	SCML2 establishes the male germline epigenome through regulation of histone H2A ubiquitination.
Q36349418	SCnorm: robust normalization of single-cell RNA-seq data
Q31121567	SDEAP: a splice graph based differential transcript expression analysis tool for population data
Q34433022	SERE: single-parameter quality control and sample comparison for RNA-Seq
Q42775332	SERPINB3/B4 contributes to early inflammation and barrier dysfunction in an experimental murine model of atopic dermatitis
Q36333518	SF3B1 haploinsufficiency leads to formation of ring sideroblasts in myelodysplastic syndromes
Q35074559	SGR: an online genomic resource for the woodland strawberry
Q30585364	SIBER: systematic identification of bimodally expressed genes using RNAseq data
Q91666163	SIDEseq: A Cell Similarity Measure Defined by Shared Identified Differentially Expressed Genes for Single-Cell RNA sequencing Data
Q57180183	SIRT1 deacetylase in aging-induced neuromuscular degeneration and amyotrophic lateral sclerosis
Q64937213	SIRT2 Contributes to the Resistance of Melanoma Cells to the Multikinase Inhibitor Dasatinib.
Q35952139	SIV Infection-Mediated Changes in Gastrointestinal Bacterial Microbiome and Virome Are Associated with Immunodeficiency and Prevented by Vaccination
Q46129058	SLC7A11 Overexpression in Glioblastoma Is Associated with Increased Cancer Stem Cell-Like Properties
Q89055234	SMCHD1 Merges Chromosome Compartments and Assists Formation of Super-Structures on the Inactive X
Q92707550	SMRT sequencing of a full-length transcriptome reveals transcript variants involved in C18 unsaturated fatty acid biosynthesis and metabolism pathways at chilling temperature in Pennisetum giganteum
Q90641424	SMRT sequencing of full-length transcriptome of seagrasses Zostera japonica
Q64123677	SMSSVD: SubMatrix Selection Singular Value Decomposition
Q47146103	SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis.
Q34708888	SNF2 chromatin remodeler-family proteins FRG1 and -2 are required for RNA-directed DNA methylation
Q28298055	SON connects the splicing-regulatory network with pluripotency in human embryonic stem cells
Q60912238	SOX2 participates in spermatogenesis of Zhikong scallop Chlamys farreri
Q41450780	SRSF1 promotes vascular smooth muscle cell proliferation through a Δ133p53/EGR1/KLF5 pathway.
Q36136216	SRSF1-Regulated Alternative Splicing in Breast Cancer
Q57048521	SSRIs target prefrontal to raphe circuits during development modulating synaptic connectivity and emotional behavior
Q37366527	STAT3 targets suggest mechanisms of aggressive tumorigenesis in diffuse large B-cell lymphoma
Q59792723	STE20/PAKA Protein Kinase Gene Releases an Autoinhibitory Domain through Pre-mRNA Alternative Splicing in the Dermatophyte
Q97636476	STEEP mediates STING ER exit and activation of signaling
Q34795549	Saccharomyces cerevisiae DNA ligase IV supports imprecise end joining independently of its catalytic activity
Q30398662	Saccular Transcriptome Profiles of the Seasonal Breeding Plainfin Midshipman Fish (Porichthys notatus), a Teleost with Divergent Sexual Phenotypes
Q31110247	Salinity-induced changes in gene expression from anterior and posterior gills of Callinectes sapidus (Crustacea: Portunidae) with implications for crustacean ecological genomics
Q55497192	Salmonella Typhi Colonization Provokes Extensive Transcriptional Changes Aimed at Evading Host Mucosal Immune Defense During Early Infection of Human Intestinal Tissue.
Q36296911	Salt stress affects mRNA editing in soybean chloroplasts
Q33732039	Salt stress responsiveness of a wild cotton species (Gossypium klotzschianum) based on transcriptomic analysis.
Q35941407	Salt-Responsive Transcriptome Profiling of Suaeda glauca via RNA Sequencing
Q103001799	Salt-responsive transcriptome analysis of triticale reveals candidate genes involved in the key metabolic pathway in response to salt stress
Q31143436	Sample size calculation based on generalized linear models for differential expression analysis in RNA-seq data
Q30671087	Sample size calculation for differential expression analysis of RNA-seq data under Poisson distribution
Q35974425	Sample size calculation while controlling false discovery rate for differential expression analysis with RNA-sequencing experiments
Q55514224	Scalable preprocessing for sparse scRNA-seq data exploiting prior knowledge.
Q31154742	Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R
Q35179019	Schizophrenia gene expression profile reverted to normal levels by antipsychotics
Q42177160	Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression
Q96302816	Screening and functional identification of lncRNAs in antler mesenchymal and cartilage tissues using high-throughput sequencing
Q96953672	Screening of Potential Key Transcripts Involved in Planarian Regeneration and Analysis of Its Regeneration Patterns by PacBio Long-Read Sequencing
Q35704442	Scrutinizing the immune defence inventory of Camponotus floridanus applying total transcriptome sequencing
Q39744699	SePIA: RNA and small RNA sequence processing, integration, and analysis.
Q90261529	Searching for best lower dimensional visualization angles for high dimensional RNA-Seq data
Q92846319	Seasonal adaptations of the hypothalamo-neurohypophyseal system of the dromedary camel
Q34634153	Seasonal and regional differences in gene expression in the brain of a hibernating mammal
Q46286026	Seasonal below-ground metabolism in switchgrass
Q40959734	Seasonal differences in the testicular transcriptome profile of free-living European beavers (Castor fiber L.) determined by the RNA-Seq method.
Q39109683	Seasonal gene expression in a migratory songbird
Q39854828	Seasonality of antibiotic prescriptions for outpatients and resistance genes in sewers and wastewater treatment plant outflow.
Q45346783	Secretoneurin A regulates neurogenic and inflammatory transcriptional networks in goldfish (Carassius auratus) radial glia.
Q89072625	Selected microRNA-192 mutant indicates association with several function genes in bovine cells
Q38882915	Selecting between-sample RNA-Seq normalization methods from the perspective of their assumptions
Q33836622	Selecting biologically informative genes in co-expression networks with a centrality score
Q61804793	Selecting precise reference normal tissue samples for cancer research using a deep learning approach
Q38607954	Selection of bone metastasis seeds by mesenchymal signals in the primary tumor stroma.
Q38815494	Selection on oxidative phosphorylation and ribosomal structure as a multigenerational response to ocean acidification in the common copepod Pseudocalanus acuspes
Q92647947	Selective Ah receptor modulators attenuate NPC1L1-mediated cholesterol uptake through repression of SREBP-2 transcriptional activity
Q28542816	Selective calcium sensitivity in immature glioma cancer stem cells
Q43021229	Selective demethylation and altered gene expression are associated with ICF syndrome in human-induced pluripotent stem cells and mesenchymal stem cells
Q35231184	Selective microRNA-Offset RNA expression in human embryonic stem cells
Q24607867	Selective regulation of lymphopoiesis and leukemogenesis by individual zinc fingers of Ikaros
Q40173008	Selective targeting of the BRG/PB1 bromodomains impairs embryonic and trophoblast stem cell maintenance.
Q33948902	Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis.
Q112585484	Selectivity of mRNA degradation by autophagy in yeast
Q36598837	Sensor histidine kinase is a β-lactam receptor and induces resistance to β-lactam antibiotics
Q35202893	Sepsis induces specific changes in histone modification patterns in human monocytes
Q96953990	Seq-ing answers: Current data integration approaches to uncover mechanisms of transcriptional regulation
Q35643204	SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps
Q30758424	SeqGSEA: a Bioconductor package for gene set enrichment analysis of RNA-Seq data integrating differential expression and splicing
Q94468347	Sequence count data are poorly fit by the negative binomial distribution
Q37672722	Sequence variation in PPP1R13L results in a novel form of cardio-cutaneous syndrome.
Q36871093	Sequence-based Association Analysis Reveals an MGST1 eQTL with Pleiotropic Effects on Bovine Milk Composition
Q28692254	Sequencing and characterisation of an extensive Atlantic salmon (Salmo salar L.) microRNA repertoire
Q33912359	Sequencing and de novo assembly of a Dahlia hybrid cultivar transcriptome
Q67199182	Sequencing cell-type-specific transcriptomes with SLAM-ITseq
Q35121637	Sequencing degraded RNA addressed by 3' tag counting.
Q34398440	Sequencing depth and coverage: key considerations in genomic analyses
Q35065302	Sequencing the transcriptome of milk production: milk trumps mammary tissue
Q37503693	Serotonergic neuron regulation informed by in vivo single-cell transcriptomics
Q50526484	Serotonin receptor 2C regulates neurite growth and is necessary for normal retinal processing of visual information.
Q91283766	Serotonin-induced hyperactivity in SSRI-resistant major depressive disorder patient-derived neurons
Q37689098	Serum exosomal miR-4772-3p is a predictor of tumor recurrence in stage II and III colon cancer
Q92141449	Serum miRNAs are potential biomarkers for the detection of disc degeneration, among which miR-26a-5p suppresses Smad1 to regulate disc homeostasis
Q38255348	Serum-Based Culture Conditions Provoke Gene Expression Variability in Mouse Embryonic Stem Cells as Revealed by Single-Cell Analysis
Q47728298	Setd1b, encoding a histone 3 lysine 4 methyltransferase, is a maternal effect gene required for the oogenic gene expression program.
Q28468525	Severe Atherosclerosis and Hypercholesterolemia in Mice Lacking Both the Melanocortin Type 4 Receptor and Low Density Lipoprotein Receptor
Q36528254	Severe impairment of male reproductive organ development in a low SMN expressing mouse model of spinal muscular atrophy
Q36583379	Sex Biased Gene Expression Profiling of Human Brains at Major Developmental Stages
Q37343070	Sex Change in Clownfish: Molecular Insights from Transcriptome Analysis.
Q55416554	Sex Determination in Ceratopteris richardii Is Accompanied by Transcriptome Changes That Drive Epigenetic Reprogramming of the Young Gametophyte.
Q64114784	Sex differences in gene expression related to antipsychotic induced weight gain
Q48262221	Sex differences in the late first trimester human placenta transcriptome
Q36311144	Sex differences in the molecular signature of the developing mouse hippocampus.
Q52717951	Sex differences in transcriptomic profiles in aged kidney cells of renin lineage.
Q35926133	Sex hormones have pervasive effects on thymic epithelial cells.
Q34767750	Sex- and tissue-specific functions of Drosophila doublesex transcription factor target genes
Q34501450	Sex- and tissue-specific profiles of chemosensory gene expression in a herbivorous gall-inducing fly (Diptera: Cecidomyiidae).
Q28554367	Sex-Biased Transcriptome of Schistosoma mansoni: Host-Parasite Interaction, Genetic Determinants and Epigenetic Regulators Are Associated with Sexual Differentiation
Q98771750	Sex-Dependent RNA Editing and N6-adenosine RNA Methylation Profiling in the Gonads of a Fish, the Olive Flounder (Paralichthys olivaceus)
Q44163366	Sex-Specific Biology of the Human Malaria Parasite Revealed from the Proteomes of Mature Male and Female Gametocytes
Q93048479	Sex-Specific Linkages Between Taxonomic and Functional Profiles of Tick Gut Microbiomes
Q38974730	Sex-Specific Neurodevelopmental Programming by Placental Insulin Receptors on Stress Reactivity and Sensorimotor Gating
Q57476663	Sex-biased expression between guppies varying in the presence of ornamental coloration
Q33704797	Sex-biased expression of microRNAs in Drosophila melanogaster
Q28655757	Sex-biased gene expression and evolution of the x chromosome in nematodes
Q57022119	Sex-biased hippocampal pathology in the 5XFAD mouse model of Alzheimer's disease: a multi-omic analysis
Q92501963	Sex-specific association between gut microbiome and fat distribution
Q36327617	Sex-specific molecular genetic response to UVB exposure in Xiphophorus maculatus skin
Q46766328	Sexual dimorphism and the evolution of sex-biased gene expression in the brown alga ectocarpus.
Q47936566	Sexual selection shapes development and maturation rates in Drosophila
Q61798373	Shambhala: a platform-agnostic data harmonizer for gene expression data
Q27304141	Shape analysis of high-throughput transcriptomics experiment data
Q39365957	Shaping development through mechanical strain: the transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish
Q54203965	Shared strategies for β-lactam catabolism in the soil microbiome.
Q41112109	Shifts in Buchnera aphidicola density in soybean aphids (Aphis glycines) feeding on virus-infected soybean
Q90129190	Shifts in the nasal microbiota of swine in response to different dosing regimens of oxytetracycline administration
Q34880531	Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking.
Q30826360	Short- and long-term effects of (56)Fe irradiation on cognition and hippocampal DNA methylation and gene expression.
Q30809178	ShrinkBayes: a versatile R-package for analysis of count-based sequencing data in complex study designs
Q40105344	Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size
Q35929651	Sialylated Milk Oligosaccharides Promote Microbiota-Dependent Growth in Models of Infant Undernutrition.
Q52558706	SigEMD: A powerful method for differential gene expression analysis in single-cell RNA sequencing data.
Q39041980	Signaling transcript profile of the asexual intraerythrocytic development cycle of Plasmodium falciparum induced by melatonin and cAMP.
Q54958670	Signatures of Long-Term Balancing Selection in Human Genomes.
Q49220418	Significant transcriptional changes in 15q duplication but not Angelman syndrome deletion stem cell-derived neurons.
Q97420902	Silencing Folylpolyglutamate Synthetase1 (FPGS1) in Switchgrass (Panicum virgatum L.) Improves Lignocellulosic Biofuel Production
Q34100872	Silencing of LINE-1 retrotransposons contributes to variation in small noncoding RNA expression in human cancer cells
Q110697229	Silencing of ciliary protein ZMYND10 affects amitotic macronucleus division in Paramecium tetraurelia
Q55127949	Silhouette Scores for Arbitrary Defined Groups in Gene Expression Data and Insights into Differential Expression Results.
Q35569242	SimSeq: a nonparametric approach to simulation of RNA-sequence datasets.
Q35961070	Similarities in Gene Expression Profiles during In Vitro Aging of Primary Human Embryonic Lung and Foreskin Fibroblasts
Q39429312	Simulated linear test applied to quantitative proteomics
Q35570028	Simultaneous generation of many RNA-seq libraries in a single reaction
Q36875965	Simultaneous profiling of transcriptome and DNA methylome from a single cell
Q35063762	Simultaneous transcriptional profiling of bacteria and their host cells
Q36128694	Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation
Q64063166	Single Chromosome Aneuploidy Induces Genome-Wide Perturbation of Nuclear Organization and Gene Expression
Q98184282	Single berry reconstitution prior to RNA-sequencing reveals novel insights into transcriptomic remodeling by leafroll virus infections in grapevines
Q41309339	Single cardiomyocyte nuclear transcriptomes reveal a lincRNA-regulated de-differentiation and cell cycle stress-response in vivo
Q50045874	Single cell RNA sequencing of stem cell-derived retinal ganglion cells.
Q34469318	Single cell transcriptome amplification with MALBAC.
Q39949730	Single cell transcriptome analysis of mouse carotid body glomus cells
Q35160338	Single nucleotide variants in transcription factors associate more tightly with phenotype than with gene expression
Q90379938	Single sample sequencing (S3EQ) of epigenome and transcriptome in nucleus accumbens
Q47864065	Single-Base Resolution Mapping of 5-Hydroxymethylcytosine Modifications in Hippocampus of Alzheimer's Disease Subjects.
Q64283216	Single-Cell RNA-Sequencing and Optical Electrophysiology of Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes Reveal Discordance Between Cardiac Subtype-Associated Gene Expression Patterns and Electrophysiological Phenotypes
Q38739573	Single-Cell RNA-Sequencing: Assessment of Differential Expression Analysis Methods.
Q90260641	Single-Cell Transcriptomic Analysis
Q57025426	Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation
Q28073365	Single-Cell Transcriptomics Bioinformatics and Computational Challenges
Q37731452	Single-cell RNA sequencing identifies distinct mouse medial ganglionic eminence cell types
Q58797494	Single-cell RNA sequencing technologies and bioinformatics pipelines
Q38645486	Single-cell RNA sequencing to explore immune cell heterogeneity
Q27321172	Single-cell RNA-Seq resolves cellular complexity in sensory organs from the neonatal inner ear.
Q88645537	Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulations
Q37185635	Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm
Q91235211	Single-cell RNA-sequencing identifies the developmental trajectory of C-Myc-dependent NK1.1- T-bet+ intraepithelial lymphocyte precursors
Q42377879	Single-cell RNA-sequencing reveals a distinct population of proglucagon-expressing cells specific to the mouse upper small intestine
Q26766140	Single-cell Transcriptome Study as Big Data
Q36899464	Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation
Q34522214	Single-cell analysis of long non-coding RNAs in the developing human neocortex
Q33801668	Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
Q38965040	Single-cell gene expression signatures reveal melanoma cell heterogeneity.
Q38366789	Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community
Q38895607	Single-cell genome-wide studies give new insight into nongenetic cell-to-cell variability in animals
Q91341304	Single-cell imaging and RNA sequencing reveal patterns of gene expression heterogeneity during fission yeast growth and adaptation
Q37672206	Single-cell mRNA quantification and differential analysis with Census
Q26775923	Single-cell technologies are revolutionizing the approach to rare cells
Q52582005	Single-cell transcriptional profiling: a window into embryonic cell-type specification.
Q28388773	Single-cell transcriptogenomics reveals transcriptional exclusion of ENU-mutated alleles
Q36363466	Single-cell transcriptome analysis reveals coordinated ectopic gene-expression patterns in medullary thymic epithelial cells
Q34924833	Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming
Q90263029	Single-cell transcriptomic profiling of the aging mouse brain
Q52350169	Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis.
Q31152278	Single-gene negative binomial regression models for RNA-Seq data with higher-order asymptotic inference
Q58569952	Sirtuin 3 attenuates amyloid-β induced neuronal hypometabolism
Q27334391	Size of the Ovulatory Follicle Dictates Spatial Differences in the Oviductal Transcriptome in Cattle
Q55301272	Slow darkening of pinto bean seed coat is associated with significant metabolite and transcript differences related to proanthocyanidin biosynthesis.
Q34255665	Slow growth of Mycobacterium tuberculosis at acidic pH is regulated by phoPR and host-associated carbon sources
Q33615612	Slowed decay of mRNAs enhances platelet specific translation
Q35837137	Small C-terminal Domain Phosphatase 3 Dephosphorylates the Linker Sites of Receptor-regulated Smads (R-Smads) to Ensure Transforming Growth Factor β (TGFβ)-mediated Germ Layer Induction in Xenopus Embryos
Q64885741	Small Non-coding RNA Expression and Vertebrate Anoxia Tolerance.
Q38627793	Small Noncoding RNA Expression During Extreme Anoxia Tolerance of Annual Killifish (Austrofundulus limnaeus) Embryos.
Q48505093	Small RNA Sequencing of Sporadic Amyotrophic Lateral Sclerosis Cerebrospinal Fluid Reveals Differentially Expressed miRNAs Related to Neural and Glial Activity.
Q57454768	Small RNA and degradome profiling involved in seed development and oil synthesis of Brassica napus
Q36295754	Small RNA profiling and degradome analysis reveal regulation of microRNA in peanut embryogenesis and early pod development
Q38765276	Small RNA sequencing revealed dysregulated piRNAs in Alzheimer's disease and their probable role in pathogenesis.
Q52672146	Small RNA-seq analysis of circulating miRNAs to identify phenotypic variability in Friedreich's ataxia patients.
Q47156169	Small RNAome sequencing delineates the small RNA landscape of pluripotent adult stem cells in the planarian Schmidtea mediterranea.
Q92283072	Small RNAs from the plant pathogenic fungus Sclerotinia sclerotiorum highlight host candidate genes associated with quantitative disease resistance
Q40046452	Small RNAs in vancomycin-resistant Enterococcus faecium involved in daptomycin response and resistance.
Q54964433	Small extracellular vesicles and their miRNA cargo are anti-apoptotic members of the senescence-associated secretory phenotype.
Q52725909	Small molecule inhibition of the CBFβ/RUNX interaction decreases ovarian cancer growth and migration through alterations in genes related to epithelial-to-mesenchymal transition.
Q35555976	Small mosquitoes, large implications: crowding and starvation affects gene expression and nutrient accumulation in Aedes aegypti
Q42696124	Smooth quantile normalization
Q55054603	Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice.
Q30724643	Soil microbial community responses to a decade of warming as revealed by comparative metagenomics
Q59797912	Soil microbiome data of two apple orchards in the UK
Q91622762	Soluble CX3CL1 gene therapy improves cone survival and function in mouse models of retinitis pigmentosa
Q33822089	Sources and Functions of Extracellular Small RNAs in Human Circulation
Q33960330	Sources of individual variability: miRNAs that predispose to neuropathic pain identified using genome-wide sequencing
Q28652786	Spatial dynamics of evolving dosage compensation in a young sex chromosome system
Q42149995	Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin
Q36454726	Spatial sexual dimorphism of X and Y homolog gene expression in the human central nervous system during early male development
Q54960559	Spatial specificity of auxin responses coordinates wood formation.
Q58777927	Spatial structuring of soil microbial communities in commercial apple orchards
Q31007879	Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll
Q35316115	Spatially heterogeneous choroid plexus transcriptomes encode positional identity and contribute to regional CSF production.
Q35833624	Spatio-Temporal Gene Expression Profiling during In Vivo Early Ovarian Folliculogenesis: Integrated Transcriptomic Study and Molecular Signature of Early Follicular Growth
Q36341494	Spatiotemporal Transcriptome Analysis Provides Insights into Bicolor Tepal Development in Lilium "Tiny Padhye".
Q48147276	Spatiotemporal patterning of EpCAM is important for murine embryonic endo- and mesodermal differentiation
Q90462336	Spatiotemporal transcriptomic divergence across human and macaque brain development
Q42131484	SpeCond: a method to detect condition-specific gene expression
Q38717265	Species-specific developmental timing is maintained by pluripotent stem cells ex utero.
Q59941686	Species-specific transcriptomic network inference of interspecies interactions
Q93104286	Specific inhibition of DPY30 activity by ASH2L-derived peptides suppresses blood cancer cell growth
Q48116577	Specificity of Pitx3-Dependent Gene Regulatory Networks in Subsets of Midbrain Dopamine Neurons.
Q35810625	Spectrum of diverse genomic alterations define non-clear cell renal carcinoma subtypes
Q33569285	Spemann organizer transcriptome induction by early beta-catenin, Wnt, Nodal, and Siamois signals in Xenopus laevis.
Q45962806	Sperm competition shapes gene expression and sequence evolution in the ocellated wrasse.
Q49452570	Sphingolipid Metabolism Is Dysregulated at Transcriptomic and Metabolic Levels in the Spinal Cord of an Animal Model of Amyotrophic Lateral Sclerosis.
Q36191621	Sphingolipids, Transcription Factors, and Conserved Toolkit Genes: Developmental Plasticity in the Ant Cardiocondyla obscurior
Q28550304	Sphingomonas wittichii Strain RW1 Genome-Wide Gene Expression Shifts in Response to Dioxins and Clay
Q33559999	Spicule formation in calcareous sponges: Coordinated expression of biomineralization genes and spicule-type specific genes
Q41152743	Splatter: simulation of single-cell RNA sequencing data
Q34478551	Splice variants and regulatory networks associated with host resistance to the intestinal worm Cooperia oncophora in cattle
Q37423466	Splicing repression allows the gradual emergence of new Alu-exons in primate evolution
Q36783025	Splicing-independent loading of TREX on nascent RNA is required for efficient expression of dual-strand piRNA clusters in Drosophila.
Q34601875	SplicingCompass: differential splicing detection using RNA-seq data
Q35226416	SpoIIID-mediated regulation of σK function during Clostridium difficile sporulation.
Q38826346	Spontaneous Chitin Accumulation in Airways and Age-Related Fibrotic Lung Disease.
Q92604998	Spontaneous evolution of human skin fibroblasts into wound-healing keratinocyte-like cells
Q60910551	Stability of methods for differential expression analysis of RNA-seq data
Q36293972	Stabilization of HIF-1α and HIF-2α, up-regulation of MYCC and accumulation of stabilized p53 constitute hallmarks of CNS-PNET animal model
Q55439069	Stable STIM1 Knockdown in Self-Renewing Human Neural Precursors Promotes Premature Neural Differentiation.
Q34081966	Stable methylation at promoters distinguishes epiblast stem cells from embryonic stem cells and the in vivo epiblasts
Q39418902	Stage 4S neuroblastoma tumors show a characteristic DNA methylation portrait
Q90070141	Stage-specific combinations of opposing poly(A) modifying enzymes guide gene expression during early oogenesis
Q50013527	Stage-specific control of early B cell development by the transcription factor Ikaros.
Q48181578	Staphylococcus aureus Responds to the Central Metabolite Pyruvate To Regulate Virulence
Q34435013	Staphylococcus aureus competence genes: mapping of the SigH, ComK1 and ComK2 regulons by transcriptome sequencing
Q27335236	Starving honey bee (Apis mellifera) larvae signal pheromonally to worker bees
Q64098777	Statistical Analysis of Metagenomics Data
Q33878414	Statistical analysis of genetic interactions in Tn-Seq data
Q47202857	Statistical analysis of non-coding RNA data.
Q97588321	Statistical considerations for the analysis of massively parallel reporter assays data
Q35673409	Statistical detection of differentially expressed genes based on RNA-seq: from biological to phylogenetic replicates
Q35904373	Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics
Q31123904	Statistical inference for time course RNA-Seq data using a negative binomial mixed-effect model
Q36521519	Statistical methods for identifying differentially expressed genes in RNA-Seq experiments
Q30982380	Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment
Q36637412	Stem cell and neurogenic gene-expression profiles link prostate basal cells to aggressive prostate cancer
Q28511267	Stem cells. m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation
Q28595640	Sterol metabolism in the filasterean Capsaspora owczarzaki has features that resemble both fungi and animals
Q99207644	Stirred suspension bioreactors maintain naïve pluripotency of human pluripotent stem cells
Q47103595	Stochastic fluctuations can reveal the feedback signs of gene regulatory networks at the single-molecule level.
Q47111902	Stochastic loss and gain of symmetric divisions in the C. elegans epidermis perturbs robustness of stem cell number.
Q47420668	Stochastic phenotype switching leads to intratumor heterogeneity in human liver cancer.
Q35362082	Stormbow: A Cloud-Based Tool for Reads Mapping and Expression Quantification in Large-Scale RNA-Seq Studies
Q100307226	Strain-specific strategies of 2'-fucosyllactose, 3-fucosyllactose, and difucosyllactose assimilation by Bifidobacterium longum subsp. infantis Bi-26 and ATCC 15697
Q59357572	Strand-Specific Dual RNA Sequencing of Bronchial Epithelial Cells Infected with Influenza A/H3N2 Viruses Reveals Splicing of Gene Segment 6 and Novel Host-Virus Interactions
Q35855855	Strand-specific in vivo screen of cancer-associated miRNAs unveils a role for miR-21(∗) in SCC progression
Q40095881	Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat.
Q40192048	Stratification of Digestive Cancers with Different Pathological Features and Survival Outcomes by MicroRNA Expression.
Q30832802	Stratification of gene coexpression patterns and GO function mining for a RNA-Seq data series
Q41849422	Streaming fragment assignment for real-time analysis of sequencing experiments
Q30574042	Streamlined ion torrent PGM-based diagnostics: BRCA1 and BRCA2 genes as a model
Q38637237	Streptococcus pneumoniae in the heart subvert the host response through biofilm-mediated resident macrophage killing.
Q93006668	Stringent Selection of Knobby Plasmodium falciparum-Infected Erythrocytes during Cytoadhesion at Febrile Temperature
Q27334308	Stromal Hedgehog signalling is downregulated in colon cancer and its restoration restrains tumour growth
Q90389782	Stromal cells downregulate miR-23a-5p to activate protective autophagy in acute myeloid leukemia
Q38930212	Strong Maternal Effects on Gene Expression in Arabidopsis lyrata Hybrids
Q41790611	Structural and functional characterization of the N terminus of Schizosaccharomyces pombe Cwf10.
Q45812134	Structural and mechanistic insights into ATRX-dependent and -independent functions of the histone chaperone DAXX.
Q37214686	Structural and transcriptomic response to antenatal corticosteroids in an Erk3-null mouse model of respiratory distress
Q35050556	Structural variation-associated expression changes are paralleled by chromatin architecture modifications
Q98386341	Structure identification, antitumor activity and mechanisms of a novel polysaccharide from Ramaria flaccida (Fr.) Quél
Q46212625	Structure-mediated modulation of mRNA abundance by A-to-I editing
Q35910164	Study design requirements for RNA sequencing-based breast cancer diagnostics
Q49347296	Study of formation of green eggshell color in ducks through global gene expression.
Q37796158	Studying bacterial transcriptomes using RNA-seq
Q62489043	Stunted childhood growth is associated with decompartmentalization of the gastrointestinal tract and overgrowth of oropharyngeal taxa
Q47115262	Subcellular analysis of pigeon hair cells implicates vesicular trafficking in cuticulosome formation and maintenance
Q30523785	Subcellular knockout of importin β1 perturbs axonal retrograde signaling
Q28822052	Subgenome-specific assembly of vitamin E biosynthesis genes and expression patterns during seed development provide insight into the evolution of oat genome
Q34796577	Subgroup-elimination transcriptomics identifies signaling proteins that define subclasses of TRPV1-positive neurons and a novel paracrine circuit
Q42358842	Subinhibitory Concentrations of Ciprofloxacin Enhance Antimicrobial Resistance and Pathogenicity of Enterococcus faecium
Q35076815	Sublethal concentrations of carbapenems alter cell morphology and genomic expression of Klebsiella pneumoniae biofilms
Q37688454	Subpathway-LNCE: Identify dysfunctional subpathways competitively regulated by lncRNAs through integrating lncRNA-mRNA expression profile and pathway topologies
Q58796772	Substantial Epigenetic Variation Causing Flower Color Chimerism in the Ornamental Tree Revealed by Single Base Resolution Methylome Detection and Transcriptome Sequencing
Q27319525	Substantial and robust changes in microRNA transcriptome support postnatal development of the hypothalamus in rat.
Q42682601	Substantial contribution of genetic variation in the expression of transcription factors to phenotypic variation revealed by eRD-GWAS.
Q37720623	Subtelomeric hotspots of aberrant 5-hydroxymethylcytosine-mediated epigenetic modifications during reprogramming to pluripotency
Q47336519	Sulfolobus acidocaldarius uptakes pentoses via a cut2-type ABC transporter and metabolizes them through the aldolase-independent Weimberg pathway
Q37207885	Sumoylation at chromatin governs coordinated repression of a transcriptional program essential for cell growth and proliferation
Q48342382	Sunflower oil supplementation affects the expression of miR-20a-5p and miR-142-5p in the lactating bovine mammary gland.
Q47141857	Super-delta: a new differential gene expression analysis procedure with robust data normalization
Q37045295	Superior anti-tumor activity of the MDM2 antagonist idasanutlin and the Bcl-2 inhibitor venetoclax in p53 wild-type acute myeloid leukemia models
Q38461893	Suppressing Sorbitol Synthesis Substantially Alters the Global Expression Profile of Stress Response Genes in Apple (Malus domestica) Leaves
Q49316629	Suppression Colitis and Colitis-Associated Colon Cancer by Anti-S100a9 Antibody in Mice.
Q92511851	Suppression of Alzheimer's Disease-Like Pathology Progression by Mitochondria-Targeted Antioxidant SkQ1: A Transcriptome Profiling Study
Q33355617	Suppression of Arabidopsis protophloem differentiation and root meristem growth by CLE45 requires the receptor-like kinase BAM3.
Q64093449	Suppression of lymphocyte apoptosis in spleen by CXCL13 after porcine circovirus type 2 infection and regulatory mechanism of CXCL13 expression in pigs
Q35104148	Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF.
Q58792927	Surgical and molecular characterization of primary and metastatic disease in a neuroendocrine tumor arising in a tailgut cyst
Q28833504	Sustained NIK-mediated antiviral signalling confers broad-spectrum tolerance to begomoviruses in cultivated plants
Q42679776	Switchgrass (Panicum virgatum L) flag leaf transcriptomes reveal molecular signatures of leaf development, senescence, and mineral dynamics
Q92491169	Symbiont population control by host-symbiont metabolic interaction in Symbiodiniaceae-cnidarian associations
Q40866596	Symbiosis with an endobacterium increases the fitness of a mycorrhizal fungus, raising its bioenergetic potential.
Q42517074	Synaptopodin is upregulated by IL-13 in eosinophilic esophagitis and regulates esophageal epithelial cell motility and barrier integrity.
Q64890367	Synchronous profiling and analysis of mRNAs and ncRNAs in the dermal papilla cells from cashmere goats.
Q35770630	Synergistic and Dose-Controlled Regulation of Cellulase Gene Expression in Penicillium oxalicum
Q102058924	Synergistic biodegradation of aromatic-aliphatic copolyester plastic by a marine microbial consortium
Q47117933	Synergistic gene expression during the acute phase response is characterized by transcription factor assisted loading
Q31136755	Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis.
Q36888921	Systematic Characterization of Long Noncoding RNAs Reveals the Contrasting Coordination of Cis- and Trans-Molecular Regulation in Human Fetal and Adult Hearts.
Q92572718	Systematic Evaluation of Statistical Methods for Identifying Looping Interactions in 5C Data
Q58801781	Systematic Functional Analysis of Sigma (σ) Factors in the Phytopathogen Reveals Novel Roles in the Regulation of Virulence and Viability
Q91595498	Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues
Q49238908	Systematic analysis reveals tumor-enhancing and -suppressing microRNAs in Drosophila epithelial tumors.
Q37685981	Systematic and functional identification of small non-coding RNAs associated with exogenous biofuel stress in cyanobacterium Synechocystis sp. PCC 6803.
Q55257564	Systematic evaluation of RNA quality, microarray data reliability and pathway analysis in fresh, fresh frozen and formalin-fixed paraffin-embedded tissue samples.
Q33921151	Systematic identification and characterization of RNA editing in prostate tumors
Q35260534	Systematic imaging reveals features and changing localization of mRNAs in Drosophila development
Q34450998	Systematic integration of RNA-Seq statistical algorithms for accurate detection of differential gene expression patterns
Q47122660	Systematic, network-based characterization of therapeutic target inhibitors.
Q99557285	Systemic muscle wasting and coordinated tumour response drive tumourigenesis
Q98734596	Systems Analysis of Biliary Atresia Through Integration of High-Throughput Biological Data
Q41198784	Systems Analysis of the Complement-Induced Priming Phase of Liver Regeneration.
Q57209301	Systems Biology Tools for Methylotrophs
Q36064572	Systems analysis of the prostate transcriptome in African-American men compared with European-American men.
Q42773427	Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage
Q37232564	Systems biological approaches to measure and understand vaccine immunity in humans
Q64078671	Systems biology in inflammatory bowel diseases: on the way to precision medicine
Q45269925	Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant
Q34492241	T-REx: Transcriptome analysis webserver for RNA-seq Expression data
Q96155977	T1D progression is associated with loss of CD3+CD56+ regulatory T cells that control CD8+ T cell effector functions
Q35626108	TAF10 Interacts with the GATA1 Transcription Factor and Controls Mouse Erythropoiesis.
Q41909501	TAF4 inactivation reveals the 3 dimensional growth promoting activities of collagen 6A3.
Q55514652	TALE factors use two distinct functional modes to control an essential zebrafish gene expression program.
Q90569769	TAPAS: tool for alternative polyadenylation site analysis
Q42474324	TBCRC 019: A Phase II Trial of Nanoparticle Albumin-Bound Paclitaxel with or without the Anti-Death Receptor 5 Monoclonal Antibody Tigatuzumab in Patients with Triple-Negative Breast Cancer.
Q64097072	TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data
Q30654220	TCC: an R package for comparing tag count data with robust normalization strategies
Q61136501	TCM visualizes trajectories and cell populations from single cell data
Q34854121	TCW: transcriptome computational workbench
Q57793803	TDP-43 enhances translation of specific mRNAs linked to neurodegenerative disease
Q36274004	TEAD transcription factors are required for normal primary myoblast differentiation in vitro and muscle regeneration in vivo
Q100525835	TERMINAL FLOWER 1-FD complex target genes and competition with FLOWERING LOCUS T
Q64056693	TET1 contributes to allergic airway inflammation and regulates interferon and aryl hydrocarbon receptor signaling pathways in bronchial epithelial cells
Q33791229	TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells.
Q57817921	TEsmall Identifies Small RNAs Associated With Targeted Inhibitor Resistance in Melanoma
Q45854044	TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes
Q36591759	TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets
Q52562789	TFAP2C regulates transcription in human naive pluripotency by opening enhancers.
Q90662834	TFPa/HADHA is required for fatty acid beta-oxidation and cardiolipin re-modeling in human cardiomyocytes
Q57807454	TNER: a novel background error suppression method for mutation detection in circulating tumor DNA
Q37178990	TNF activation of NF-κB is essential for development of single-positive thymocytes
Q41548199	TNFα signalling primes chromatin for NF-κB binding and induces rapid and widespread nucleosome repositioning
Q31035530	TRAPLINE: a standardized and automated pipeline for RNA sequencing data analysis, evaluation and annotation
Q33559109	TRAPR: R Package for Statistical Analysis and Visualization of RNA-Seq Data
Q37219923	TRF2 is recruited to the pre-initiation complex as a testis-specific subunit of TFIIA/ALF to promote haploid cell gene expression.
Q37702375	TRIM28 multi-domain protein regulates cancer stem cell population in breast tumor development.
Q36660136	TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells
Q99248754	TRIM37 controls cancer-specific vulnerability to PLK4 inhibition
Q36180648	TSS-EMOTE, a refined protocol for a more complete and less biased global mapping of transcription start sites in bacterial pathogens.
Q34529467	TT-seq maps the human transient transcriptome
Q47134417	TU-Tagging: A Method for Identifying Layer-Enriched Neuronal Genes in Developing Mouse Visual Cortex
Q55316125	Tachyplesin Causes Membrane Instability That Kills Multidrug-Resistant Bacteria by Inhibiting the 3-Ketoacyl Carrier Protein Reductase FabG.
Q31140100	Tag-Count Analysis of Large-Scale Proteomic Data.
Q33795908	Taming Human Genetic Variability: Transcriptomic Meta-Analysis Guides the Experimental Design and Interpretation of iPSC-Based Disease Modeling
Q93164016	Tamoxifen induction of Cre recombinase does not cause long-lasting or sexually divergent responses in the CNS epigenome or transcriptome: implications for the design of aging studies
Q59134779	Tamoxifen therapy in a murine model of myotubular myopathy
Q36096456	Target-site and non-target-site based resistance to the herbicide tribenuron-methyl in flixweed (Descurainia sophia L.).
Q39095219	TargetLink, a new method for identifying the endogenous target set of a specific microRNA in intact living cells
Q34165702	Targeted H3R26 deimination specifically facilitates estrogen receptor binding by modifying nucleosome structure
Q37652350	Targeted RP9 ablation and mutagenesis in mouse photoreceptor cells by CRISPR-Cas9.
Q36569086	Targeted deletion of miR-132/-212 impairs memory and alters the hippocampal transcriptome
Q36216971	Targeted high-throughput sequencing for diagnosis of genetically heterogeneous diseases: efficient mutation detection in Bardet-Biedl and Alström syndromes
Q40267440	Targeted imputation of sequence variants and gene expression profiling identifies twelve candidate genes associated with lactation volume, composition and calving interval in dairy cattle.
Q34001762	Targeted next generation sequencing identifies clinically actionable mutations in patients with melanoma.
Q41929416	Targeted reconstruction of T cell receptor sequence from single cell RNA-seq links CDR3 length to T cell differentiation state
Q37088721	Targeting H3K4 trimethylation in Huntington disease
Q63866205	Targeting NOTCH activation in small cell lung cancer through LSD1 inhibition
Q96953616	Targeting Nuclear LSD1 to Reprogram Cancer Cells and Reinvigorate Exhausted T Cells via a Novel LSD1-EOMES Switch
Q27333471	Targeting Tumor Cells with Anti-CD44 Antibody Triggers Macrophage-Mediated Immune Modulatory Effects in a Cancer Xenograft Model
Q89639511	Targeting YAP1/LINC00152/FSCN1 Signaling Axis Prevents the Progression of Colorectal Cancer
Q57047042	Targeting nuclear receptor NR4A1-dependent adipocyte progenitor quiescence promotes metabolic adaptation to obesity
Q91638141	Targeting the BRD4-HOXB13 Coregulated Transcriptional Networks with Bromodomain-Kinase Inhibitors to Suppress Metastatic Castration-Resistant Prostate Cancer
Q36137294	Taxa of the Nasal Microbiome Are Associated with Influenza-Specific IgA Response to Live Attenuated Influenza Vaccine
Q36937525	Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling
Q64063208	Taxonomic and Functional Characterization of the Microbial Community During Spontaneous Fermentation of Riesling Must
Q41548418	Tcf7l2 plays pleiotropic roles in the control of glucose homeostasis, pancreas morphology, vascularization and regeneration
Q58799229	Tdrd6a Regulates the Aggregation of Buc into Functional Subcellular Compartments that Drive Germ Cell Specification
Q34329373	Technical and biological variance structure in mRNA-Seq data: life in the real world
Q34066130	Technical considerations for functional sequencing assays
Q37475532	Technical variations in low-input RNA-seq methodologies
Q60671818	Telobox motifs recruit CLF/SWN–PRC2 for H3K27me3 deposition via TRB factors in Arabidopsis
Q41191920	Telomere dysfunction drives aberrant hematopoietic differentiation and myelodysplastic syndrome
Q36083151	Temperature desynchronizes sugar and organic acid metabolism in ripening grapevine fruits and remodels their transcriptome
Q35493466	Temperature during early development has long-term effects on microRNA expression in Atlantic cod
Q34379144	Temperature during embryonic development has persistent effects on thermal acclimation capacity in zebrafish.
Q36240637	Temperature-dependent sRNA transcriptome of the Lyme disease spirochete
Q47206816	Temperature-responsive miRNAs in Drosophila orchestrate adaptation to different ambient temperatures
Q44395113	Temporal and fluoride control of secondary metabolism regulates cellular organofluorine biosynthesis.
Q61444678	Temporal dynamics in meta longitudinal RNA-Seq data
Q97528039	Temporal expression of MOF acetyltransferase primes transcription factor networks for erythroid fate
Q55514660	Temporal profiling of redox-dependent heterogeneity in single cells.
Q90256707	Temporal specificity and heterogeneity of Drosophila immune cells
Q46267199	Temporal variation in brain transcriptome is associated with the expression of female mimicry as a sequential male alternative reproductive tactic in fish.
Q46701184	Terroir is a key driver of seed-associated microbial assemblages.
Q91712059	Test of Arabidopsis Space Transcriptome: A Discovery Environment to Explore Multiple Plant Biology Spaceflight Experiments
Q49826720	Testicular piRNA profile comparison between successful and unsuccessful micro-TESE retrieval in NOA patients.
Q31054019	Testing for association between RNA-Seq and high-dimensional data
Q35761262	Testing multiple hypotheses through IMP weighted FDR based on a genetic functional network with application to a new zebrafish transcriptome study
Q51089610	Testing the Ret and Sema3d genetic interaction in mouse enteric nervous system development.
Q36551630	Testing the kinship theory of intragenomic conflict in honey bees (Apis mellifera).
Q42077485	Tet1 and Tet2 Protect DNA Methylation Canyons against Hypermethylation
Q49821241	Tet2 promotes pathogen infection-induced myelopoiesis through mRNA oxidation.
Q40540246	Th2 responses are primed by skin dendritic cells with distinct transcriptional profiles.
Q36100136	The 4p16.3 Parkinson Disease Risk Locus Is Associated with GAK Expression and Genes Involved with the Synaptic Vesicle Membrane
Q31107317	The AHL- and BDSF-dependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111.
Q41911201	The APSES transcription factor Efg1 is a global regulator that controls morphogenesis and biofilm formation in Candida parapsilosis.
Q38775132	The AS-RBM15 lncRNA enhances RBM15 protein translation during megakaryocyte differentiation
Q47267267	The Agrobacterium F-box protein effector VirF destabilizes the Arabidopsis GLABROUS1 enhancer/binding protein-like transcription factor VFP4, a transcriptional activator of defense response genes
Q39026771	The Anti-Warburg Effect Elicited by the cAMP-PGC1α Pathway Drives Differentiation of Glioblastoma Cells into Astrocytes
Q61537452	The Antioxidant Gallic Acid Inhibits Aflatoxin Formation in by Modulating Transcription Factors FarB and CreA
Q38677249	The Antisense Transcriptome and the Human Brain.
Q41356876	The AraC Negative Regulator family modulates the activity of histone-like proteins in pathogenic bacteria.
Q37309759	The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
Q38888741	The Aryl Hydrocarbon Receptor Governs Epithelial Cell Invasion during Oropharyngeal Candidiasis
Q35087722	The Atlantic Bonito (Sarda sarda, Bloch 1793) transcriptome and detection of differential expression during larvae development
Q33742735	The BET protein FSH functionally interacts with ASH1 to orchestrate global gene activity in Drosophila
Q33905488	The Bile Acid Nuclear Receptor FXRα Is a Critical Regulator of Mouse Germ Cell Fate
Q33693698	The Biomphalaria glabrata DNA methylation machinery displays spatial tissue expression, is differentially active in distinct snail populations and is modulated by interactions with Schistosoma mansoni
Q36229559	The C-Terminal SynMuv/DdDUF926 Domain Regulates the Function of the N-Terminal Domain of DdNKAP.
Q40092139	The Capacity of Mycobacterium tuberculosis To Survive Iron Starvation Might Enable It To Persist in Iron-Deprived Microenvironments of Human Granulomas
Q35821071	The Chromatin and Transcriptional Landscape of Native Saccharomyces cerevisiae Telomeres and Subtelomeric Domains
Q61797457	The Circulating Transcriptome as a Source of Biomarkers for Melanoma
Q31145113	The Clostridium small RNome that responds to stress: the paradigm and importance of toxic metabolite stress in C. acetobutylicum
Q92702930	The Combination of IFN β and TNF Induces an Antiviral and Immunoregulatory Program via Non-Canonical Pathways Involving STAT2 and IRF9
Q90232251	The Core Proteome of Biofilm-Grown Clinical Pseudomonas aeruginosa Isolates
Q37631487	The Cryptococcus neoformans transcriptome at the site of human meningitis
Q54993894	The DNA Methylome and Association of Differentially Methylated Regions with Differential Gene Expression during Heat Stress in Brassica rapa.
Q28585866	The DNA methyltransferase DNMT3C protects male germ cells from transposon activity
Q37297521	The Development of Spasmolytic Polypeptide/TFF2-Expressing Metaplasia (SPEM) During Gastric Repair Is Absent in the Aged Stomach
Q90388961	The Distinct Immune-Stimulatory Capacities of Porphyromonas gingivalis Strains 381 and ATCC 33277 Are Determined by the fimB Allele and Gingipain Activity
Q36204069	The Drosophila transcriptional network is structured by microbiota.
Q47564709	The Dynamics of microRNA Transcriptome in Bovine Corpus Luteum during Its Formation, Function, and Regression
Q38739798	The EMT regulator ZEB2 is a novel dependency of human and murine acute myeloid leukemia.
Q36548933	The Endoplasmic Reticulum Resident Protein AGR3. Required for Regulation of Ciliary Beat Frequency in the Airway.
Q35754687	The Epigenome of Schistosoma mansoni Provides Insight about How Cercariae Poise Transcription until Infection
Q27308703	The F-actin modifier villin regulates insulin granule dynamics and exocytosis downstream of islet cell autoantigen 512.
Q38447229	The Footprint of Polygenic Adaptation on Stress-Responsive Cis-Regulatory Divergence in the Arabidopsis Genus
Q93051855	The Fungal-Specific Transcription Factor VpFSTF1 Is Required for Virulence in Valsa pyri
Q34141128	The G protein-coupled receptor P2Y14 influences insulin release and smooth muscle function in mice
Q37025677	The Genetic Program of Pancreatic β-Cell Replication In Vivo
Q34494524	The Genomic Basis of Postponed Senescence in Drosophila melanogaster
Q36372425	The Greater Phenotypic Homeostasis of the Allopolyploid Coffea arabica Improved the Transcriptional Homeostasis Over that of Both Diploid Parents
Q93269955	The H2B ubiquitin-protein ligase RNF40 is required for somatic cell reprogramming
Q55437673	The H3K4 methyltransferase Setd1b is essential for hematopoietic stem and progenitor cell homeostasis in mice.
Q41373535	The Helicase Aquarius/EMB-4 Is Required to Overcome Intronic Barriers to Allow Nuclear RNAi Pathways to Heritably Silence Transcription.
Q37137093	The Herbaspirillum seropedicae SmR1 Fnr orthologs controls the cytochrome composition of the electron transport chain
Q37058831	The Hippo effector YAP promotes resistance to RAF- and MEK-targeted cancer therapies
Q92000954	The IRE1 endoplasmic reticulum stress sensor activates natural killer cell immunity in part by regulating c-Myc
Q40814759	The Iflaviruses Sacbrood virus and Deformed wing virus evoke different transcriptional responses in the honeybee which may facilitate their horizontal or vertical transmission
Q30980468	The Impact of Normalization Methods on RNA-Seq Data Analysis.
Q39063414	The Importance of Standardization on Analyzing Circulating RNA.
Q46299508	The Influence of Polyploidy on the Evolution of Yeast Grown in a Sub-Optimal Carbon Source.
Q89947189	The Integrated RNA Landscape of Renal Preconditioning against Ischemia-Reperfusion Injury
Q36231482	The Jujube Genome Provides Insights into Genome Evolution and the Domestication of Sweetness/Acidity Taste in Fruit Trees
Q92921900	The Kinetochore Protein Spc105, a Novel Interaction Partner of LaeA, Regulates Development and Secondary Metabolism in Aspergillus flavus
Q33560494	The Krüppel-like factor 9 cistrome in mouse hippocampal neurons reveals predominant transcriptional repression via proximal promoter binding
Q64903794	The LL-100 panel: 100 cell lines for blood cancer studies.
Q91937958	The Legacy of Sexual Ancestors in Phenotypic Variability, Gene Expression, and Homoeolog Regulation of Asexual Hybrids and Polyploids
Q36251438	The Lin28/let-7 axis is critical for myelination in the peripheral nervous system
Q34981305	The Lingulodinium circadian system lacks rhythmic changes in transcript abundance.
Q64117673	The MYB transcription factor PbMYB12b positively regulates flavonol biosynthesis in pear fruit
Q46521379	The Maize MID-COMPLEMENTING ACTIVITY Homolog CELL NUMBER REGULATOR13/NARROW ODD DWARF Coordinates Organ Growth and Tissue Patterning
Q40957286	The MazF-regulon: a toolbox for the post-transcriptional stress response in Escherichia coli.
Q33715179	The Mechanism of Starch Over-Accumulation in Chlamydomonas reinhardtii High-Starch Mutants Identified by Comparative Transcriptome Analysis
Q28822105	The Mechanisms of Maize Resistance to Fusarium verticillioides by Comprehensive Analysis of RNA-seq Data
Q89838165	The MicroRNA-based Liquid Biopsy Improves Early Assessment of Lethal Acetaminophen Poisoning: A Case Report
Q33798046	The Model-Based Study of the Effectiveness of Reporting Lists of Small Feature Sets Using RNA-Seq Data
Q47796589	The Molecular Dialog between Flowering Plant Reproductive Partners Defined by SNP-Informed RNA-Sequencing.
Q90204253	The Multifunctional Long-Distance Movement Protein of Pea Enation Mosaic Virus 2 Protects Viral and Host Transcripts from Nonsense-Mediated Decay
Q64259729	The NAC family transcription factor GmNAC42-1 regulates biosynthesis of the anticancer and neuroprotective glyceollins in soybean
Q34313744	The NSL complex regulates housekeeping genes in Drosophila.
Q35784667	The Olfactory Transcriptome and Progression of Sexual Maturation in Homing Chum Salmon Oncorhynchus keta
Q37565780	The Phenotypic Plasticity of Duplicated Genes in Saccharomyces cerevisiae and the Origin of Adaptations
Q31161909	The PhoP-dependent ncRNA Mcr7 modulates the TAT secretion system in Mycobacterium tuberculosis.
Q52660787	The Plasmodium falciparum transcriptome in severe malaria reveals altered expression of genes involved in important processes including surface antigen-encoding var genes.
Q38499110	The Population Genomics of Sunflowers and Genomic Determinants of Protein Evolution Revealed by RNAseq
Q28608647	The Power Decoder Simulator for the Evaluation of Pooled shRNA Screen Performance
Q37148550	The Protein Elicitor PevD1 Enhances Resistance to Pathogens and Promotes Growth in Arabidopsis
Q28610734	The Pseudoautosomal Regions of the U/V Sex Chromosomes of the Brown Alga Ectocarpus Exhibit Unusual Features
Q40781083	The Pseudomonas aeruginosa Transcriptional Landscape Is Shaped by Environmental Heterogeneity and Genetic Variation
Q30470671	The Pseudomonas aeruginosa transcriptome in planktonic cultures and static biofilms using RNA sequencing
Q24339485	The R882H DNMT3A mutation associated with AML dominantly inhibits wild-type DNMT3A by blocking its ability to form active tetramers
Q48268876	The RNA exosome promotes transcription termination of backtracked RNA polymerase II.
Q37610037	The RNA-binding landscape of RBM10 and its role in alternative splicing regulation in models of mouse early development.
Q37179887	The RNA-binding profile of Acinus, a peripheral component of the exon junction complex, reveals its role in splicing regulation
Q35776191	The RNA-binding protein HuR is essential for the B cell antibody response.
Q35234123	The RNA-binding protein Rbfox1 regulates splicing required for skeletal muscle structure and function
Q37228840	The RNA-binding protein TTP is a global post-transcriptional regulator of feedback control in inflammation
Q35562430	The RNAi machinery controls distinct responses to environmental signals in the basal fungus Mucor circinelloides.
Q90474658	The RUNX1/IL-34/CSF-1R axis is an autocrinally regulated modulator of resistance to BRAF-V600E inhibition in melanoma
Q40732481	The Receptive Endometrial Transcriptomic Signature Indicates an Earlier Shift from Proliferation to Metabolism at Early Diestrus in the Cow.
Q47314971	The Restorer-of-fertility-like 2 pentatricopeptide repeat protein and RNase P are required for the processing of mitochondrial orf291 RNA in Arabidopsis
Q41885869	The Rhizobium tropici CIAT 899 NodD2 protein regulates the production of Nod factors under salt stress in a flavonoid-independent manner
Q33653243	The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.).
Q40108549	The Rice Phytochrome Genes, PHYA and PHYB, Have Synergistic Effects on Anther Development and Pollen Viability
Q30763296	The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again
Q46284233	The Role of Alternative Splicing and Differential Gene Expression in Cichlid Adaptive Radiation
Q93159986	The Role of Maternal HP1a in Early Drosophila Embryogenesis via Regulation of Maternal Transcript Production
Q36867916	The SEB-1 Transcription Factor Binds to the STRE Motif in Neurospora crassa and Regulates a Variety of Cellular Processes Including the Stress Response and Reserve Carbohydrate Metabolism
Q27318186	The SPF27 homologue Num1 connects splicing and kinesin 1-dependent cytoplasmic trafficking in Ustilago maydis
Q35037608	The Sarcoglycan complex is expressed in the cerebrovascular system and is specifically regulated by astroglial Cx30 channels.
Q89942669	The Selection of Quantification Pipelines for Illumina RNA-seq Data Using a Subsampling Approach
Q35014818	The Sequencing Bead Array (SBA), a next-generation digital suspension array
Q33734500	The Shift of the Intestinal Microbiome in the Innate Immunity-Deficient Mutant rde-1 Strain of C. elegans upon Orsay Virus Infection
Q91636384	The Soybean Gene J Contributes to Salt Stress Tolerance by Up-Regulating Salt-Responsive Genes
Q47411868	The Stress Granule Transcriptome Reveals Principles of mRNA Accumulation in Stress Granules
Q34337291	The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
Q45057541	The T-ALL related gene BCL11B regulates the initial stages of human T-cell differentiation
Q52580167	The Transcription Factor Runx3 Establishes Chromatin Accessibility of cis-Regulatory Landscapes that Drive Memory Cytotoxic T Lymphocyte Formation.
Q58620993	The Transcription Factor Zfx Regulates Peripheral T Cell Self-Renewal and Proliferation
Q60307884	The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence
Q38821609	The UEA Small RNA Workbench: A Suite of Computational Tools for Small RNA Analysis
Q36756141	The Universal 3D3 Antibody of Human PODXL Is Pluripotent Cytotoxic, and Identifies a Residual Population After Extended Differentiation of Pluripotent Stem Cells
Q35875521	The Urinary Bladder Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling
Q89880088	The Urinary Transcriptome as a Source of Biomarkers for Prostate Cancer
Q60961215	The Use of Targeted Next Generation Sequencing to Explore Candidate Regulators of TGF-β1's Impact on Kidney Cells
Q35836298	The WRKY transcription factor family and senescence in switchgrass.
Q47231170	The Xenobiotic Transporter Mdr1 Enforces T Cell Homeostasis in the Presence of Intestinal Bile Acids.
Q36277313	The abundance of homoeologue transcripts is disrupted by hybridization and is partially restored by genome doubling in synthetic hexaploid wheat
Q34046398	The acetyllysine reader BRD3R promotes human nuclear reprogramming and regulates mitosis
Q39218777	The agr locus regulates virulence and colonization genes in Clostridium difficile 027.
Q90356369	The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis
Q42361953	The allure of the epigenome
Q26991596	The analytical landscape of static and temporal dynamics in transcriptome data
Q41035457	The antenna transcriptome changes in mosquito Anopheles sinensis, pre- and post- blood meal.
Q52591579	The anti-fecundity effect of 5-azacytidine (5-AzaC) on Schistosoma mansoni is linked to dis-regulated transcription, translation and stem cell activities.
Q47215867	The anti-tumorigenic activity of A2M-A lesson from the naked mole-rat
Q92564119	The archaeal RNA chaperone TRAM0076 shapes the transcriptome and optimizes the growth of Methanococcus maripaludis
Q37503162	The architecture of parent-of-origin effects in mice.
Q54975180	The asymmetrically segregating lncRNA cherub is required for transforming stem cells into malignant cells.
Q89289390	The auxin receptor TIR1 homolog (PagFBL 1) regulates adventitious rooting through interactions with Aux/IAA28 in Populus
Q39922294	The avian transcriptome response to malaria infection
Q46930204	The bHLH transcription factor HBI1 mediates the trade-off between growth and pathogen-associated molecular pattern-triggered immunity in Arabidopsis
Q22122162	The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
Q30565895	The bench scientist's guide to statistical analysis of RNA-Seq data
Q48118366	The blue-light receptor CmWC-1 mediates fruit body development and secondary metabolism in Cordyceps militaris
Q52721159	The bone marrow is patrolled by NK cells that are primed and expand in response to systemic viral activation.
Q91895462	The bread wheat epigenomic map reveals distinct chromatin architectural and evolutionary features of functional genetic elements
Q34643010	The challenges of delivering bioinformatics training in the analysis of high-throughput data
Q35125871	The characteristic direction: a geometrical approach to identify differentially expressed genes
Q35410758	The clock protein period 2 synchronizes mitotic expansion and decidual transformation of human endometrial stromal cells
Q33913372	The common ground of genomics and systems biology
Q31133769	The complete Campylobacter jejuni transcriptome during colonization of a natural host determined by RNAseq
Q35903370	The complex pattern of epigenomic variation between natural yeast strains at single-nucleosome resolution
Q64069506	The complexity of the x (octoploid) transcriptome by single-molecule long-read sequencing
Q37564500	The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women
Q89514430	The comprehensive detection of miRNA, lncRNA, and circRNA in regulation of mouse melanocyte and skin development
Q30844402	The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance
Q34313050	The cytoplasmic poly(A) polymerases GLD-2 and GLD-4 promote general gene expression via distinct mechanisms
Q35896182	The design and analysis of transposon insertion sequencing experiments
Q91803207	The developmental transcriptome for Lytechinus variegatus exhibits temporally punctuated gene expression changes
Q33853060	The developmental transcriptome of the bamboo snout beetle Cyrtotrachelus buqueti and insights into candidate pheromone-binding proteins
Q55168026	The developmental transcriptomes of two sea biscuit species with differing larval types.
Q90066004	The differences of gonadal hormones and uterine transcriptome during shell calcification of hens laying hard or weak-shelled eggs
Q46093664	The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions
Q37577429	The dual role of LSD1 and HDAC3 in STAT5-dependent transcription is determined by protein interactions, binding affinities, motifs and genomic positions.
Q36975743	The dynamic transcriptional and translational landscape of the model antibiotic producer Streptomyces coelicolor A3(2)
Q90701288	The dynamics of the piglet gut microbiome during the weaning transition in association with health and nutrition
Q48045527	The ecological and genetic basis of convergent thick-lipped phenotypes in cichlid fishes
Q35576581	The effect on the transcriptome of Anemone coronaria following infection with rust (Tranzschelia discolor).
Q35864702	The effects of hepatitis B virus integration into the genomes of hepatocellular carcinoma patients.
Q35346690	The effects of variable sample biomass on comparative metagenomics
Q34991967	The elucidation of stress memory inheritance in Brassica rapa plants
Q83232241	The endonuclease Cue2 cleaves mRNAs at stalled ribosomes during No Go Decay
Q40467056	The epigenetic landscape of Alu repeats delineates the structural and functional genomic architecture of colon cancer cells.
Q98164434	The establishment of new protein expression system using N starvation inducible promoters in Chlorella
Q36043417	The evolution of gene expression and the transcriptome-phenotype relationship.
Q34342920	The exon junction complex controls transposable element activity by ensuring faithful splicing of the piwi transcript.
Q31108080	The exon quantification pipeline (EQP): a comprehensive approach to the quantification of gene, exon and junction expression from RNA-seq data
Q46799142	The exosome and trans-acting small interfering RNAs regulate cuticular wax biosynthesis during Arabidopsis inflorescence stem development.
Q35560693	The expansion of thymopoiesis in neonatal mice is dependent on expression of high mobility group a 2 protein (Hmga2).
Q40124952	The exported chaperone Hsp70-x supports virulence functions for Plasmodium falciparum blood stage parasites
Q34142608	The expression pattern of microRNAs in granulosa cells of subordinate and dominant follicles during the early luteal phase of the bovine estrous cycle
Q64286981	The expression signature of cancer-associated KRAB-ZNF factors identified in TCGA pan-cancer transcriptomic data
Q35173180	The extraembryonic serosa is a frontier epithelium providing the insect egg with a full-range innate immune response.
Q33983286	The fat body transcriptomes of the yellow fever mosquito Aedes aegypti, pre- and post- blood meal
Q33364196	The founder-cell transcriptome in the Arabidopsis apetala1 cauliflower inflorescence meristem
Q41489772	The function of the inner nuclear envelope protein SUN1 in mRNA export is regulated by phosphorylation
Q36037233	The gene cortex controls mimicry and crypsis in butterflies and moths
Q38844234	The gene expression profiling of hepatocellular carcinoma by a network analysis approach shows a dominance of intrinsically disordered proteins (IDPs) between hub nodes.
Q57158107	The genetic basis and cell of origin of mixed phenotype acute leukaemia
Q64988999	The genetic basis of 3-hydroxypropanoate metabolism in Cupriavidus necator H16.
Q28650352	The genetics of colony form and function in Caribbean Acropora corals
Q33618136	The genetics of venom ontogeny in the eastern diamondback rattlesnake (Crotalus adamanteus).
Q34998375	The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution
Q21183984	The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery
Q48180187	The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry
Q32186925	The genome-wide transcription response to telomerase deficiency in the thermotolerant yeast Hansenula polymorpha DL-1.
Q99728026	The genomes of a monogenic fly: views of primitive sex chromosomes
Q24632989	The genomic and transcriptomic landscape of a HeLa cell line
Q90556057	The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters
Q33812612	The genomic landscape of Neanderthal ancestry in present-day humans
Q48272683	The genomic landscape of schwannoma
Q35132942	The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs
Q39983807	The head-regeneration transcriptome of the planarian Schmidtea mediterranea.
Q28534029	The hemolymph proteome of fed and starved Drosophila larvae
Q61799519	The heterogeneity of plasma miRNA profiles in hepatocellular carcinoma patients and the exploration of diagnostic circulating miRNAs for hepatocellular carcinoma
Q42632263	The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome.
Q34045599	The histone chaperone CAF-1 safeguards somatic cell identity
Q41272774	The histone code reader SPIN1 controls RET signaling in liposarcoma
Q47287140	The histone demethylase Kdm6b regulates a mature gene expression program in differentiating cerebellar granule neurons
Q64105001	The histone methyltransferase G9a regulates tolerance to oxidative stress-induced energy consumption
Q91694562	The host jasmonic acid pathway regulates the transcriptomic changes of dodder and host plant under the scenario of caterpillar feeding on dodder
Q35196576	The host metabolite D-serine contributes to bacterial niche specificity through gene selection.
Q34758692	The hot pepper (Capsicum annuum) microRNA transcriptome reveals novel and conserved targets: a foundation for understanding MicroRNA functional roles in hot pepper.
Q36101997	The human olfactory transcriptome
Q37607420	The human platelet: strong transcriptome correlations among individuals associate weakly with the platelet proteome.
Q42774740	The human testis-specific proteome defined by transcriptomics and antibody-based profiling
Q64889932	The human tubal lavage proteome reveals biological processes that may govern the pathology of hydrosalpinx.
Q89986734	The identification of key candidate genes mediating yellow seedling lethality in a Lilium regale mutant
Q35739100	The impact of chromatin remodelling on cellulase expression in Trichoderma reesei.
Q42328730	The impact of microRNAs on transcriptional heterogeneity and gene co-expression across single embryonic stem cells
Q35671363	The impact of read length on quantification of differentially expressed genes and splice junction detection
Q33994847	The impact of widespread regulatory neofunctionalization on homeolog gene evolution following whole-genome duplication in maize.
Q46258343	The importance of sourcing enzymes from non-conventional fungi for metabolic engineering and biomass breakdown
Q34617202	The importance of study design for detecting differentially abundant features in high-throughput experiments.
Q34975742	The importance of tissue specificity for RNA-seq: highlighting the errors of composite structure extractions
Q33918928	The influence of ascorbate on anthocyanin accumulation during high light acclimation in Arabidopsis thaliana: further evidence for redox control of anthocyanin synthesis.
Q56437623	The influence of invasive jellyfish blooms on the aquatic microbiome in a coastal lagoon (Varano, SE Italy) detected by an Illumina-based deep sequencing strategy
Q98281050	The integral spliceosomal component CWC15 is required for development in Arabidopsis
Q64103314	The interaction between miR160 and miR165/166 in the control of leaf development and drought tolerance in Arabidopsis
Q91792051	The involvement of PybZIPa in light-induced anthocyanin accumulation via the activation of PyUFGT through binding to tandem G-boxes in its promoter
Q34797374	The kidney transcriptome and proteome defined by transcriptomics and antibody-based profiling
Q35793492	The landscape of antisense gene expression in human cancers
Q22122065	The landscape of long noncoding RNAs in the human transcriptome
Q35096347	The landscape of microRNA, Piwi-interacting RNA, and circular RNA in human saliva
Q30925913	The level of residual dispersion variation and the power of differential expression tests for RNA-Seq data
Q21128779	The life cycle of Drosophila orphan genes
Q24316411	The little elongation complex functions at initiation and elongation phases of snRNA gene transcription
Q24300557	The little elongation complex regulates small nuclear RNA transcription
Q36303194	The lncRNA RZE1 Controls Cryptococcal Morphological Transition
Q39069118	The long non-coding RNA ERIC is regulated by E2F and modulates the cellular response to DNA damage.
Q37266000	The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex
Q52802423	The loss of SMG1 causes defects in quality control pathways in Physcomitrella patens.
Q64237208	The lysine-specific methyltransferase KMT2C/MLL3 regulates DNA repair components in cancer
Q92020674	The mRNA Export Receptor NXF1 Coordinates Transcriptional Dynamics, Alternative Polyadenylation, and mRNA Export
Q42777313	The mRNA expression of soluble urokinase plasminogen activator surface receptor in human adipose tissue is positively correlated with body mass index.
Q37610034	The mRNA transportome of the BicD/Egl transport machinery
Q24292828	The mammalian-membrane two-hybrid assay (MaMTH) for probing membrane-protein interactions in human cells
Q42051779	The metabolic background is a global player in Saccharomyces gene expression epistasis
Q34598830	The metabolic enzyme AdhE controls the virulence of Escherichia coli O157:H7
Q36327765	The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition
Q34181123	The miR-17-92 cluster and its target THBS1 are differentially expressed in angiosarcomas dependent on MYC amplification
Q34571691	The miRNA profile of human pancreatic islets and beta-cells and relationship to type 2 diabetes pathogenesis
Q90163654	The miRNA-mRNA Networks Involving Abnormal Energy and Hormone Metabolisms Restrict Tillering in a Wheat Mutant dmc
Q36080716	The microRNA-212/132 cluster regulates B cell development by targeting Sox4.
Q39303192	The microbiome of the octocoral Lobophytum pauciflorum: minor differences between sexes and resilience to short-term stress.
Q38757523	The microbiota of diapause: How host-microbe associations are formed after dormancy in an aquatic crustacean
Q89519008	The microbiota programs DNA methylation to control intestinal homeostasis and inflammation
Q91943356	The mimetic wing pattern of Papilio polytes butterflies is regulated by a doublesex-orchestrated gene network
Q96135488	The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition
Q35021853	The mitochondrial RNA landscape of Saccharomyces cerevisiae
Q27324657	The mitotic kinesin KIF11 is a driver of invasion, proliferation, and self-renewal in glioblastoma.
Q91698339	The molecular landscape of ETMR at diagnosis and relapse
Q39737114	The mucin-degradation strategy of Ruminococcus gnavus: The importance of intramolecular trans-sialidases
Q28652555	The multispecific thyroid hormone transporter OATP1C1 mediates cell-specific sulforhodamine 101-labeling of hippocampal astrocytes
Q35536678	The naked endosperm genes encode duplicate INDETERMINATE domain transcription factors required for maize endosperm cell patterning and differentiation
Q92860014	The negative cofactor 2 complex is a key regulator of drug resistance in Aspergillus fumigatus
Q40588850	The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells
Q40337066	The non-coding variant rs1800734 enhances DCLK3 expression through long-range interaction and promotes colorectal cancer progression
Q42704375	The novel catabolic pathway of 3,6-anhydro-L-galactose, the main component of red macroalgae, in a marine bacterium
Q37120486	The novel enterochromaffin marker Lmx1a regulates serotonin biosynthesis in enteroendocrine cell lineages downstream of Nkx2.2.
Q42374136	The nuclear receptor ERβ engages AGO2 in regulation of gene transcription, RNA splicing and RISC loading.
Q35149450	The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release
Q27313664	The olfactory transcriptomes of mice
Q35921820	The oncogenic BRD4-NUT chromatin regulator drives aberrant transcription within large topological domains.
Q38990147	The osteoblast to osteocyte transition: epigenetic changes and response to the vitamin D3 hormone
Q92534361	The pause-initiation limit restricts transcription activation in human cells
Q47126689	The pennycress (Thlaspi arvense L.) nectary: structural and transcriptomic characterization.
Q92220937	The persimmon (Diospyros oleifera Cheng) genome provides new insights into the inheritance of astringency and ancestral evolution
Q58725198	The piRNA pathway responds to environmental signals to establish intergenerational adaptation to stress
Q35018852	The pituitary gland of the European eel reveals massive expression of genes involved in the melanocortin system
Q38491087	The plover neurotranscriptome assembly: transcriptomic analysis in an ecological model species without a reference genome.
Q47177987	The pomegranate (Punica granatum L.) genome provides insights into fruit quality and ovule developmental biology
Q38408717	The positive transcriptional elongation factor (P-TEFb) is required for neural crest specification
Q38693313	The power and promise of RNA-seq in ecology and evolution
Q99233914	The precursor of PI(3,4,5)P3 alleviates aging by activating daf-18(Pten) and independent of daf-16
Q59339836	The pro-metastasis effect of circANKS1B in breast cancer
Q42378407	The prognostic value of osteopontin in limited-stage small cell lung cancer patients and its mechanism
Q34480571	The protein Compromised Hydrolysis of Triacylglycerols 7 (CHT7) acts as a repressor of cellular quiescence in Chlamydomonas
Q33669039	The purinergic receptor P2X5 regulates inflammasome activity and hyper-multinucleation of murine osteoclasts.
Q22122094	The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
Q28590444	The recently identified modifier of murine metastable epialleles, Rearranged L-Myc Fusion, is involved in maintaining epigenetic marks at CpG island shores and enhancers
Q30887371	The red coral (Corallium rubrum) transcriptome: a new resource for population genetics and local adaptation studies
Q46918275	The regulatory network of cluster-root function and development in phosphate-deficient white lupin (Lupinus albus) identified by transcriptome sequencing
Q39969726	The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis
Q36844633	The ribosomal protein Asc1/RACK1 is required for efficient translation of short mRNAs
Q24634193	The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
Q37629382	The ribosome-engaged landscape of alternative splicing
Q36885604	The rnc Gene Promotes Exopolysaccharide Synthesis and Represses the vicRKX Gene Expressions via MicroRNA-Size Small RNAs in Streptococcus mutans
Q36430114	The role of FLI-1-EWS, a fusion gene reciprocal to EWS-FLI-1, in Ewing sarcoma
Q90538551	The role of Fnr paralogs for controlling anaerobic metabolism in diazotroph Paenibacillus polymyxa WLY78
Q42024823	The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger
Q34728974	The role of microRNAs in the pathogenesis of MMPi-induced skin fibrodysplasia
Q30902059	The role of transcriptome resilience in resistance of corals to bleaching
Q36932921	The roles of 3'-exoribonucleases and the exosome in trypanosome mRNA degradation
Q48222293	The root transcriptome of Achyranthes bidentata and the identification of the genes involved in the replanting benefit.
Q34045997	The sex-specific transcriptome of the hermaphrodite sparid sharpsnout seabream (Diplodus puntazzo)
Q36706981	The sexual identity of adult intestinal stem cells controls organ size and plasticity.
Q35621427	The small RNA content of human sperm reveals pseudogene-derived piRNAs complementary to protein-coding genes
Q34416881	The small RNA diversity from Medicago truncatula roots under biotic interactions evidences the environmental plasticity of the miRNAome
Q46972838	The small RNA profile in latex from Hevea brasiliensis trees is affected by tapping panel dryness.
Q35000683	The small molecule C-6 is selectively cytotoxic against breast cancer cells and its biological action is characterized by mitochondrial defects and endoplasmic reticulum stress
Q34464670	The small molecule ISRIB reverses the effects of eIF2α phosphorylation on translation and stress granule assembly
Q57472098	The somatic piRNA pathway controls germline transposition over generations
Q38990833	The sonic hedgehog factor GLI1 imparts drug resistance through inducible glucuronidation
Q37528828	The splicing landscape is globally reprogrammed during male meiosis
Q28601481	The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
Q38431572	The stability of the transcriptome during the estrous cycle in four regions of the mouse brain.
Q34575919	The star-nosed mole reveals clues to the molecular basis of mammalian touch
Q37595312	The systematic analysis of coding and long non-coding RNAs in the sub-chronic and chronic stages of spinal cord injury.
Q33626633	The tobacco genome sequence and its comparison with those of tomato and potato
Q34622011	The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels
Q34483620	The transcription factor XBP1 is selectively required for eosinophil differentiation
Q27334429	The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression
Q47275197	The transcription factors Hsf1 and Msn2 of thermotolerant Kluyveromyces marxianus promote cell growth and ethanol fermentation of Saccharomyces cerevisiae at high temperatures
Q34483803	The transcription factors SOX9 and SOX5/SOX6 cooperate genome-wide through super-enhancers to drive chondrogenesis
Q40064441	The transcriptional landscape of Rhizoctonia solani AG1-IA during infection of soybean as defined by RNA-seq
Q34012161	The transcriptional landscape of mouse beta cells compared to human beta cells reveals notable species differences in long non-coding RNA and protein-coding gene expression.
Q36383442	The transcriptional profile of coronary arteritis in Kawasaki disease
Q94599655	The transcriptional regulator ZNF398 mediates pluripotency and epithelial character downstream of TGF-beta in human PSCs
Q39043617	The transcriptional regulatory network mediated by banana (Musa acuminata) dehydration-responsive element binding (MaDREB) transcription factors in fruit ripening
Q43815974	The transcriptional response of prokaryotes to phytoplankton-derived dissolved organic matter in seawater
Q42118286	The transcriptional response to tumorigenic polarity loss in Drosophila.
Q33654488	The transcriptome landscape of early maize meiosis
Q34157321	The transcriptome of compatible and incompatible interactions of potato (Solanum tuberosum) with Phytophthora infestans revealed by DeepSAGE analysis
Q41513628	The transcriptome of mouse central nervous system myelin
Q38372519	The transcriptome of the avian malaria parasite Plasmodium ashfordi displays host-specific gene expression
Q34448000	The transcriptome profile of the mosquito Culex quinquefasciatus following permethrin selection
Q37072817	The transcriptomes of novel marmoset monkey embryonic stem cell lines reflect distinct genomic features
Q36325868	The transcriptomic and evolutionary signature of social interactions regulating honey bee caste development
Q34872924	The transcriptomic basis of oviposition behaviour in the parasitoid wasp Nasonia vitripennis
Q34714372	The transgenerational effects of heat stress in the nematode Caenorhabditis remanei are negative and rapidly eliminated under direct selection for increased stress resistance in larvae
Q90835482	The translational landscape of ground state pluripotency
Q34619895	The tumor promoting activity of the EP4 receptor for prostaglandin E2 in murine skin.
Q47344876	The tumor suppressor Brat controls neuronal stem cell lineages by inhibiting Deadpan and Zelda
Q90781399	The tumor suppressor TMEM127 regulates insulin sensitivity in a tissue-specific manner
Q95831978	The ubiquitin-conjugating enzyme UBE2K determines neurogenic potential through histone H3 in human embryonic stem cells
Q38622207	The use of high-throughput small RNA sequencing reveals differentially expressed microRNAs in response to aster yellows phytoplasma-infection in Vitis vinifera cv. 'Chardonnay'.
Q35195514	The use of massive sequencing to detect differences between immature embryos of MON810 and a comparable non-GM maize variety.
Q35073265	The utility of shallow RNA-Seq for documenting differential gene expression in genes with high and low levels of expression
Q36098197	The venom gland transcriptome of the parasitoid wasp Nasonia vitripennis highlights the importance of novel genes in venom function
Q35953393	The virulence factor ychO has a pleiotropic action in an Avian Pathogenic Escherichia coli (APEC) strain
Q89521985	The water channel aquaporin 8 is a critical regulator of intestinal fluid homeostasis in collagenous colitis
Q36361822	The well-coordinated linkage between acidogenicity and aciduricity via insoluble glucans on the surface of Streptococcus mutans
Q64089510	The wild sweetpotato (Ipomoea trifida) genome provides insights into storage root development
Q42269096	The yeast osmostress response is carbon source dependent
Q40560718	The β-1,3-glucanosyltransferases (Gels) affect the structure of the rice blast fungal cell wall during appressorium-mediated plant infection
Q33849219	Themis2 is not required for B cell development, activation, and antibody responses.
Q35037262	Therapeutic Re-Activation of Protein Phosphatase 2A in Acute Myeloid Leukemia
Q90776462	Therapeutically actionable PAK4 is amplified, overexpressed, and involved in bladder cancer progression
Q35867131	Therapy-induced tumour secretomes promote resistance and tumour progression
Q35943309	Thermal reactionomes reveal divergent responses to thermal extremes in warm and cool-climate ant species
Q46817122	Thermal stress and predation risk trigger distinct transcriptomic responses in the intertidal snail Nucella lapillus
Q95841076	Third-Generation Sequencing Reveals LncRNA-Regulated HSP Genes in the Populus x canadensis Moench Heat Stress Response
Q49860189	Three AtCesA6-like members enhance biomass production by distinctively promoting cell growth in Arabidopsis.
Q42502170	Three distinct cell populations express extracellular matrix proteins and increase in number during skeletal muscle fibrosis
Q37371138	Three-dimensional modelling identifies novel genetic dependencies associated with breast cancer progression in the isogenic MCF10 model
Q37688740	Tidal heat pulses on a reef trigger a fine-tuned transcriptional response in corals to maintain homeostasis
Q39740841	Time series expression analyses using RNA-seq: a statistical approach
Q37565737	Time-Course Analysis of Gene Expression During the Saccharomyces cerevisiae Hypoxic Response.
Q36132285	Time-Course Small RNA Profiling Reveals Rice miRNAs and Their Target Genes in Response to Rice Stripe Virus Infection
Q37575052	Time-Series Analyses of Transcriptomes and Proteomes Reveal Molecular Networks Underlying Oil Accumulation in Canola
Q38621281	Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation
Q89600501	Tissue alarmins and adaptive cytokine induce dynamic and distinct transcriptional responses in tissue-resident intraepithelial cytotoxic T lymphocytes
Q48251415	Tissue and serum microRNA profile of oral squamous cell carcinoma patients.
Q61443582	Tissue expression profiles unveil the gene interaction of hepatopancreas, eyestalk, and ovary in the precocious female Chinese mitten crab, Eriocheir sinensis
Q42269250	Tissue- and stage-specific Wnt target gene expression is controlled subsequent to β-catenin recruitment to cis-regulatory modules
Q42169811	Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data
Q36948978	Tissue-specific splicing of a ubiquitously expressed transcription factor is essential for muscle differentiation
Q33699994	Tissue-specific transcript profiling for ABC transporters in the sequestering larvae of the phytophagous leaf beetle Chrysomela populi
Q50483608	Tissue-specific transcriptome characterization for developing tadpoles of the northern leopard frog (Lithobates pipiens).
Q30415684	Tissue-specific transcriptomics, chromosomal localization, and phylogeny of chemosensory and odorant binding proteins from the red flour beetle Tribolium castaneum reveal subgroup specificities for olfaction or more general functions.
Q37124590	Tmem88a mediates GATA-dependent specification of cardiomyocyte progenitors by restricting WNT signaling
Q35959893	To Be a Flower or Fruiting Branch: Insights Revealed by mRNA and Small RNA Transcriptomes from Different Cotton Developmental Stages
Q31012930	ToPASeq: an R package for topology-based pathway analysis of microarray and RNA-Seq data
Q50461704	Tomato GOLDEN2-LIKE transcription factors reveal molecular gradients that function during fruit development and ripening.
Q37500438	Tomato genomic resources database: an integrated repository of useful tomato genomic information for basic and applied research
Q50952833	Top considerations for creating bioinformatics software documentation.
Q35550192	Top2a identifies and provides epigenetic rationale for novel combination therapeutic strategies for aggressive prostate cancer
Q92132725	TopControl: A Tool to Prioritize Candidate Disease-associated Genes based on Topological Network Features
Q41696196	Topological organization and dynamic regulation of human tRNA genes during macrophage differentiation
Q24320240	Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
Q33663564	Total synthesis of a functional designer eukaryotic chromosome.
Q28076421	Toward Accurate and Quantitative Comparative Metagenomics
Q30363613	Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow
Q90523201	Towards Quantitative Microbiome Community Profiling Using Internal Standards
Q33860129	Towards an integrative model of C4 photosynthetic subtypes: insights from comparative transcriptome analysis of NAD-ME, NADP-ME, and PEP-CK C4 species
Q35126486	Towards decrypting cryptobiosis--analyzing anhydrobiosis in the tardigrade Milnesium tardigradum using transcriptome sequencing
Q38522397	Towards next generation CHO cell biology: Bioinformatics methods for RNA-Seq-based expression profiling
Q59337320	Toxicity of essential oil to the mitochondrion and NAD/NADH dehydrogenase in
Q35423042	Toxicogenomics directory of chemically exposed human hepatocytes
Q90061000	Tracing Tumor Evolution in Sarcoma Reveals Clonal Origin of Advanced Metastasis
Q35968813	Tracing the Evolutionary History of Inositol, 1, 4, 5-Trisphosphate Receptor: Insights from Analyses of Capsaspora owczarzaki Ca2+ Release Channel Orthologs
Q34277067	Tracking difference in gene expression in a time-course experiment using gene set enrichment analysis
Q49189198	Training the salmon's genes: influence of aerobic exercise, swimming performance and selection on gene expression in Atlantic salmon.
Q43882532	Trait-directed de novo population transcriptome dissects genetic regulation of a balanced polymorphism in phosphorus nutrition/arsenate tolerance in a wild grass, Holcus lanatus
Q60925911	Transciptome profiling at early infection of Elaeis guineensis by Ganoderma boninense provides novel insights on fungal transition from biotrophic to necrotrophic phase
Q41440879	Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
Q35860802	Transcript Quantification by RNA-Seq Reveals Differentially Expressed Genes in the Red and Yellow Fruits of Fragaria vesca
Q35442326	Transcript profiling reveals auxin and cytokinin signaling pathways and transcription regulation during in vitro organogenesis of Ramie (Boehmeria nivea L. Gaud).
Q34059111	Transcript profiling reveals expression differences in wild-type and glabrous soybean lines
Q41863096	Transcription Factor Repertoire of Homeostatic Eosinophilopoiesis
Q36194979	Transcription Factors Encoded on Core and Accessory Chromosomes of Fusarium oxysporum Induce Expression of Effector Genes
Q40493442	Transcription Profiles Reveal Sugar and Hormone Signaling Pathways Mediating Flower Induction in Apple (Malus domestica Borkh.).
Q34557895	Transcription factor Nurr1 maintains fiber integrity and nuclear-encoded mitochondrial gene expression in dopamine neurons
Q28241609	Transcription factor TEAD4 regulates expression of myogenin and the unfolded protein response genes during C2C12 cell differentiation
Q89032137	Transcription factor activating protein 4 is synthetically lethal and a master regulator of MYCN-amplified neuroblastoma
Q41892580	Transcription factor assisted loading and enhancer dynamics dictate the hepatic fasting response
Q36652029	Transcription factors LRF and BCL11A independently repress expression of fetal hemoglobin
Q38474382	Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling
Q35930309	Transcription factors are targeted by differentially expressed miRNAs in primates
Q90294382	Transcription profiles reveal the regulatory mechanisms of spur bud changes and flower induction in response to shoot bending in apple (Malus domestica Borkh.).
Q35034308	Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA.
Q41111659	Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles.
Q48506131	Transcription-Associated Mutation Promotes RNA Complexity in Highly Expressed Genes-A Major New Source of Selectable Variation.
Q64091722	Transcription-dependent spreading of the Dal80 yeast GATA factor across the body of highly expressed genes
Q35020492	Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines
Q90723664	Transcriptional Analysis of Masson Pine (Pinus massoniana) under High CO2 Stress
Q91715741	Transcriptional Analysis of the Early Ripening of 'Kyoho' Grape in Response to the Treatment of Riboflavin
Q37287087	Transcriptional Control in Marine Copiotrophic and Oligotrophic Bacteria with Streamlined Genomes
Q36115977	Transcriptional Differences between Diapausing and Non-Diapausing D. montana Females Reared under the Same Photoperiod and Temperature
Q37303724	Transcriptional Fingerprint of Hypomyelination in Zfp191null and Shiverer (Mbpshi) Mice
Q42269245	Transcriptional Maintenance of Pancreatic Acinar Identity, Differentiation, and Homeostasis by PTF1A.
Q90632399	Transcriptional Profiles Associated with Marek's Disease Virus in Bursa and Spleen Lymphocytes Reveal Contrasting Immune Responses during Early Cytolytic Infection
Q33820061	Transcriptional Profiling and Identification of Heat-Responsive Genes in Perennial Ryegrass by RNA-Sequencing
Q36265092	Transcriptional Profiling in Experimental Visceral Leishmaniasis Reveals a Broad Splenic Inflammatory Environment that Conditions Macrophages toward a Disease-Promoting Phenotype
Q37459285	Transcriptional Profiling of Rice Treated with MoHrip1 Reveal the Function of Protein Elicitor in Enhancement of Disease Resistance and Plant Growth
Q46247416	Transcriptional Profiling of Saccharomyces cerevisiae Reveals the Impact of Variation of a Single Transcription Factor on Differential Gene Expression in 4NQO, Fermentable, and Non-fermentable Carbon Sources.
Q37594953	Transcriptional Regulation by ATOH1 and its Target SPDEF in the Intestine.
Q50147151	Transcriptional Regulation of the Ambient Temperature Response by H2A.Z Nucleosomes and HSF1 Transcription Factors in Arabidopsis.
Q48157799	Transcriptional Regulation on Aneuploid Chromosomes in Divers Candida albicans Mutants
Q35685131	Transcriptional Responses Associated with Virulence and Defence in the Interaction between Heterobasidion annosum s.s. and Norway Spruce
Q37553552	Transcriptional Responses of the Bacterium Burkholderia terrae BS001 to the Fungal Host Lyophyllum sp. Strain Karsten under Soil-Mimicking Conditions
Q38648166	Transcriptional Variation of Diverse Enteropathogenic Escherichia coli Isolates under Virulence-Inducing Conditions
Q51494268	Transcriptional activation by the thyroid hormone receptor through ligand-dependent receptor recruitment and chromatin remodelling.
Q34617209	Transcriptional analysis of South African cassava mosaic virus-infected susceptible and tolerant landraces of cassava highlights differences in resistance, basal defense and cell wall associated genes during infection
Q36283347	Transcriptional analysis of defense mechanisms in upland tetraploid switchgrass to greenbugs
Q34093208	Transcriptional analysis of endocrine disruption using zebrafish and massively parallel sequencing
Q37218259	Transcriptional and Physiological Changes during Mycobacterium tuberculosis Reactivation from Non-replicating Persistence
Q33662192	Transcriptional and biochemical responses of monoacylglycerol acyltransferase-mediated oil synthesis and associated senescence-like responses in Nicotiana benthamiana
Q37678800	Transcriptional and post-transcriptional regulation of the ionizing radiation response by ATM and p53
Q35863062	Transcriptional cellular responses in midgut tissue of Aedes aegypti larvae following intoxication with Cry11Aa toxin from Bacillus thuringiensis.
Q33617304	Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes
Q33587193	Transcriptional comparison of the filamentous fungus Neurospora crassa growing on three major monosaccharides D-glucose, D-xylose and L-arabinose.
Q34000852	Transcriptional consequences of 16p11.2 deletion and duplication in mouse cortex and multiplex autism families
Q38697425	Transcriptional consequences of XPA disruption in human cell lines.
Q30784130	Transcriptional data mining of Salvia miltiorrhiza in response to methyl jasmonate to examine the mechanism of bioactive compound biosynthesis and regulation
Q46601846	Transcriptional dynamics of tail regeneration in Xenopus tropicalis.
Q38444070	Transcriptional effects of metal-rich acid drainage water from the abandoned Løkken Mine on Atlantic salmon (Salmo salar) smolt
Q42002376	Transcriptional landscape of trans-kingdom communication between Candida albicans and Streptococcus gordonii.
Q30404856	Transcriptional maturation of the mouse auditory forebrain.
Q41854365	Transcriptional networks specifying homeostatic and inflammatory programs of gene expression in human aortic endothelial cells
Q34146397	Transcriptional profile of tuberculosis antigen-specific T cells reveals novel multifunctional features
Q34174494	Transcriptional profiles of bovine in vivo pre-implantation development.
Q89709142	Transcriptional profiling indicates cAMP-driven reversal of HIV latency in monocytes occurs via transcription factor SP-1
Q47095142	Transcriptional profiling of Toll-like receptor 2-deficient primary murine brain cells during Toxoplasma gondii infection
Q34662925	Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing
Q38616419	Transcriptional profiling of catechins biosynthesis genes during tea plant leaf development.
Q64273536	Transcriptional profiling of coaggregation interactions between Streptococcus gordonii and Veillonella parvula by Dual RNA-Seq
Q35127278	Transcriptional profiling of mammary gland in Holstein cows with extremely different milk protein and fat percentage using RNA sequencing
Q64239407	Transcriptional profiling of methyl jasmonate-induced defense responses in bilberry (Vaccinium myrtillus L.)
Q35192022	Transcriptional profiling of nitrogen fixation in Azotobacter vinelandii
Q91728118	Transcriptional profiling of skeletal muscle reveals starvation response and compensatory growth in Spinibarbus hollandi
Q39955991	Transcriptional profiling of subcutaneous adipose tissue in Italian Large White pigs divergent for backfat thickness
Q34802549	Transcriptional profiling of sweetpotato (Ipomoea batatas) roots indicates down-regulation of lignin biosynthesis and up-regulation of starch biosynthesis at an early stage of storage root formation
Q34552891	Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq
Q46313995	Transcriptional profiling reveals mechanisms of sexually dimorphic responses of Populus cathayana to potassium deficiency
Q50742936	Transcriptional refractoriness is dependent on core promoter architecture.
Q30820949	Transcriptional regulation by normal epithelium of premalignant to malignant progression in Barrett's esophagus
Q64120283	Transcriptional regulation of autophagy-lysosomal function in BRAF-driven melanoma progression and chemoresistance
Q96302949	Transcriptional regulation of strigolactone signalling in Arabidopsis
Q34884906	Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill
Q34769925	Transcriptional response of honey bee larvae infected with the bacterial pathogen Paenibacillus larvae
Q34387693	Transcriptional responses in a Drosophila defensive symbiosis
Q41071202	Transcriptional responses in the hepatopancreas of Eriocheir sinensis exposed to deltamethrin
Q35299333	Transcriptional responses of olive flounder (Paralichthys olivaceus) to low temperature
Q46887642	Transcriptional responses of wheat and the cereal cyst nematode Heterodera avenae during their early contact stage
Q34994324	Transcriptional responses to sucrose mimic the plant-associated life style of the plant growth promoting endophyte Enterobacter sp. 638
Q36311627	Transcriptional sequencing and analysis of major genes involved in the adventitious root formation of mango cotyledon segments
Q35937176	Transcriptional signature induced by a metastasis-promoting c-Src mutant in a human breast cell line
Q45784223	Transcriptional signature of lymphoblastoid cell lines of BRCA1, BRCA2 and non-BRCA1/2 high risk breast cancer families
Q35170331	Transcriptomal changes and functional annotation of the developing non-human primate choroid plexus
Q33607252	Transcriptome Analyses Reveal Candidate Pod Shattering-Associated Genes Involved in the Pod Ventral Sutures of Common Vetch (Vicia sativa L.).
Q33857428	Transcriptome Analyses Shed New Insights into Primary Metabolism and Regulation of Blumeria graminis f. sp. tritici during Conidiation
Q37465576	Transcriptome Analysis Identifies Key Candidate Genes Mediating Purple Ovary Coloration in Asiatic Hybrid Lilies
Q90248516	Transcriptome Analysis Identifies Two Ethylene Response Factors That Regulate Proanthocyanidin Biosynthesis During Malus Crabapple Fruit Development
Q36137328	Transcriptome Analysis Identifies the Dysregulation of Ultraviolet Target Genes in Human Skin Cancers
Q57215099	Transcriptome Analysis Provides Insight into the Molecular Mechanisms Underlying -Mediated Cross-Incompatibility in Maize
Q57300065	Transcriptome Analysis Provides Insights Into the Adaptive Responses to Hypoxia of a Schizothoracine Fish ()
Q51732569	Transcriptome Analysis Reveals Candidate Genes Associated with Leaf Etiolation of a Cytoplasmic Male Sterility Line in Chinese Cabbage (Brassica Rapa L. ssp. Pekinensis).
Q64057698	Transcriptome Analysis Reveals Cotton () Genes That Are Differentially Expressed in Cadmium Stress Tolerance
Q91651786	Transcriptome Analysis Reveals Key Pathways and Hormone Activities Involved in Early Microtuber Formation of Dioscorea opposita
Q93102595	Transcriptome Analysis Reveals Key Seed-Development Genes in Common Buckwheat (Fagopyrum esculentum)
Q36100254	Transcriptome Analysis Reveals Regulation of Gene Expression for Lipid Catabolism in Young Broilers by Butyrate Glycerides
Q92505535	Transcriptome Analysis Reveals the Molecular Mechanisms Underlying Adenosine Biosynthesis in Anamorph Strain of Caterpillar Fungus
Q42373246	Transcriptome Analysis Suggests That Chromosome Introgression Fragments from Sea Island Cotton (Gossypium barbadense) Increase Fiber Strength in Upland Cotton (Gossypium hirsutum)
Q36044926	Transcriptome Analysis and Gene Identification in the Pulmonary Artery of Broilers with Ascites Syndrome
Q37338643	Transcriptome Analysis and Ultrastructure Observation Reveal that Hawthorn Fruit Softening Is due to Cellulose/Hemicellulose Degradation
Q88677524	Transcriptome Analysis in Chinese Cabbage (Brassica rapa ssp. pekinensis) Provides the Role of Glucosinolate Metabolism in Response to Drought Stress
Q47216936	Transcriptome Analysis in Haematococcus pluvialis: Astaxanthin Induction by High Light with Acetate and Fe2.
Q92570925	Transcriptome Analysis of Acid-Responsive Genes and Pathways Involved in Polyamine Regulation in Iron Walnut
Q35836993	Transcriptome Analysis of Blunt Snout Bream (Megalobrama amblycephala) Reveals Putative Differential Expression Genes Related to Growth and Hypoxia
Q55410580	Transcriptome Analysis of Bronchoalveolar Lavage Fluid From Children With Mycoplasma pneumoniae Pneumonia Reveals Natural Killer and T Cell-Proliferation Responses.
Q36133577	Transcriptome Analysis of Cadmium-Treated Roots in Maize (Zea mays L.).
Q33665635	Transcriptome Analysis of Floral Buds Deciphered an Irregular Course of Meiosis in Polyploid Brassica rapa
Q47205704	Transcriptome Analysis of Flounder (Paralichthys olivaceus) Gill in Response to Lymphocystis Disease Virus (LCDV) Infection: Novel Insights into Fish Defense Mechanisms
Q42333758	Transcriptome Analysis of Male Drosophila melanogaster Exposed to Ethylparaben Using Digital Gene Expression Profiling
Q30846415	Transcriptome Analysis of Mango (Mangifera indica L.) Fruit Epidermal Peel to Identify Putative Cuticle-Associated Genes
Q42772818	Transcriptome Analysis of Murine Olfactory Sensory Neurons during Development Using Single Cell RNA-Seq
Q90681521	Transcriptome Analysis of Ovary Development in Nile Tilapia Under Different Photoperiod Regimes
Q47160459	Transcriptome Analysis of Paraburkholderia phymatum under Nitrogen Starvation and during Symbiosis with Phaseolus Vulgaris
Q35976224	Transcriptome Analysis of Ramie (Boehmeria nivea L. Gaud.) in Response to Ramie Moth (Cocytodes coerulea Guenée) Infestation
Q36881637	Transcriptome Analysis of Scrippsiella trochoidea CCMP 3099 Reveals Physiological Changes Related to Nitrate Depletion
Q37270780	Transcriptome Analysis of Stem and Globally Comparison with Other Tissues in Brassica napus
Q36155972	Transcriptome Analysis of Sucrose Metabolism during Bulb Swelling and Development in Onion (Allium cepa L.).
Q35846964	Transcriptome Analysis of Syringa oblata Lindl. Inflorescence Identifies Genes Associated with Pigment Biosynthesis and Scent Metabolism
Q46252212	Transcriptome Analysis of Two Species of Jute in Response to Polyethylene Glycol (PEG)- induced Drought Stress
Q50139431	Transcriptome Analysis of a Bloom-Forming Cyanobacterium Microcystis aeruginosa during Ma-LMM01 Phage Infection.
Q37742940	Transcriptome Analysis of a Female-sterile Mutant (fsm) in Chinese Cabbage (Brassica campestris ssp. pekinensis)
Q36202291	Transcriptome Analysis of mRNA and miRNA in Somatic Embryos of Larix leptolepis Subjected to Hydrogen Treatment
Q37557694	Transcriptome Analysis of the Cf-12-Mediated Resistance Response to Cladosporium fulvum in Tomato
Q35009187	Transcriptome Analysis of the Human Striatum in Tourette Syndrome
Q36069005	Transcriptome Analysis of the Innate Immunity-Related Complement System in Spleen Tissue of Ctenopharyngodon idella Infected with Aeromonas hydrophila
Q28554379	Transcriptome Analysis of the Response to NaCl in Suaeda maritima Provides an Insight into Salt Tolerance Mechanisms in Halophytes
Q40108995	Transcriptome Analysis of the Sm-Mediated Hypersensitive Response to Stemphylium lycopersici in Tomato
Q58921996	Transcriptome Assembly and Expression Data from Normal and Mantled Oil Palm Fruit
Q64993804	Transcriptome Changes in the Mink Uterus during Blastocyst Dormancy and Reactivation.
Q28601147	Transcriptome Profile Analysis from Different Sex Types of Ginkgo biloba L
Q36105825	Transcriptome Profile of Near-Isogenic Soybean Lines for β-Conglycinin α-Subunit Deficiency during Seed Maturation
Q92062301	Transcriptome Profile of Yeast Strain Used for Biological Wine Aging Revealed Dynamic Changes of Gene Expression in Course of Flor Development
Q64115529	Transcriptome Profiles of Alternaria oxytropis Provides Insights into Swainsonine Biosynthesis
Q90351325	Transcriptome Profiles of Nod Factor-independent Symbiosis in the Tropical Legume Aeschynomene evenia
Q90043617	Transcriptome Profiling Analysis of Bovine Vaginal Epithelial Cell Response to an Isolated Lactobacillus Strain
Q36040816	Transcriptome Profiling Identifies Multiplexin as a Target of SAGA Deubiquitinase Activity in Glia Required for Precise Axon Guidance During Drosophila Visual Development
Q36238525	Transcriptome Profiling Identifies Ribosome Biogenesis as a Target of Alcohol Teratogenicity and Vulnerability during Early Embryogenesis
Q64260018	Transcriptome Profiling Reveals Effects of Drought Stress on Gene Expression in Diploid Potato Genotype P3-198
Q57255221	Transcriptome Profiling Strategies
Q98772000	Transcriptome Profiling across Five Tissues of Giant Panda
Q37120056	Transcriptome Profiling of Antimicrobial Resistance in Pseudomonas aeruginosa
Q35725936	Transcriptome Profiling of Developing Murine Lens Through RNA Sequencing
Q38838955	Transcriptome Profiling of Huanglongbing (HLB) Tolerant and Susceptible Citrus Plants Reveals the Role of Basal Resistance in HLB Tolerance
Q35784721	Transcriptome Profiling of Pediatric Core Binding Factor AML.
Q37256508	Transcriptome Profiling of Petal Abscission Zone and Functional Analysis of an Aux/IAA Family Gene RhIAA16 Involved in Petal Shedding in Rose
Q28553217	Transcriptome Profiling of Resistance to Fusarium oxysporum f. sp. conglutinans in Cabbage (Brassica oleracea) Roots
Q28553609	Transcriptome Profiling of Watermelon Root in Response to Short-Term Osmotic Stress
Q33365426	Transcriptome Profiling of Wheat Inflorescence Development from Spikelet Initiation to Floral Patterning Identified Stage-Specific Regulatory Genes
Q35722477	Transcriptome Profiling of Wild-Type and pga-Knockout Mutant Strains Reveal the Role of Exopolysaccharide in Aggregatibacter actinomycetemcomitans
Q89666200	Transcriptome Profiling of the Elongating Internode of Cotton (Gossypium hirsutum L.) Seedlings in Response to Mepiquat Chloride
Q36140504	Transcriptome Profiling of the Pineapple under Low Temperature to Facilitate Its Breeding for Cold Tolerance
Q64066631	Transcriptome Sequence of Antibiotic-Treated Pseudomonas aeruginosa
Q37134455	Transcriptome Sequencing Analyses between the Cytoplasmic Male Sterile Line and Its Maintainer Line in Welsh Onion (Allium fistulosum L.).
Q45880806	Transcriptome Sequencing Reveals Novel Candidate Genes for Cardinium hertigii-Caused Cytoplasmic Incompatibility and Host-Cell Interaction
Q64250288	Transcriptome Sequencing Reveals Potential Mechanisms of the Maternal Effect on Egg Diapause Induction of
Q35903379	Transcriptome Sequencing in Response to Salicylic Acid in Salvia miltiorrhiza
Q37550834	Transcriptome Sequencing of Gynostemma pentaphyllum to Identify Genes and Enzymes Involved in Triterpenoid Biosynthesis
Q28607754	Transcriptome Sequencing, De Novo Assembly and Differential Gene Expression Analysis of the Early Development of Acipenser baeri
Q35919019	Transcriptome adaptation of the bovine mammary gland to diets rich in unsaturated fatty acids shows greater impact of linseed oil over safflower oil on gene expression and metabolic pathways
Q35153549	Transcriptome analyses of adult mouse brain reveal enrichment of lncRNAs in specific brain regions and neuronal populations
Q36187700	Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size
Q35124973	Transcriptome analyses of the honeybee response to Nosema ceranae and insecticides
Q93186632	Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements
Q89856314	Transcriptome analyses reveal molecular mechanisms underlying phenotypic differences among transcriptional subtypes of glioblastoma
Q39248353	Transcriptome analysis and gene expression atlas for Panicum hallii var. filipes, a diploid model for biofuel research
Q36061336	Transcriptome analysis and identification of genes associated with ω-3 fatty acid biosynthesis in Perilla frutescens (L.) var. frutescens
Q90447701	Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora
Q58713402	Transcriptome analysis and identification of key genes involved in 1-deoxynojirimycin biosynthesis of mulberry ( L.)
Q90093965	Transcriptome analysis and transcription factors responsive to drought stress in Hibiscus cannabinus
Q35194579	Transcriptome analysis by Illumina high-throughout paired-end sequencing reveals the complexity of differential gene expression during in vitro plantlet growth and flowering in Amaranthus tricolor L.
Q89681210	Transcriptome analysis clarified genes involved in resistance to Phytophthora capsici in melon
Q34993611	Transcriptome analysis during berry development provides insights into co-regulated and altered gene expression between a seeded wine grape variety and its seedless somatic variant
Q35128886	Transcriptome analysis identifies Bacillus anthracis genes that respond to CO2 through an AtxA-dependent mechanism
Q40580006	Transcriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes in leaves and fruits
Q50422175	Transcriptome analysis in different developmental stages of Batocera horsfieldi (Coleoptera: Cerambycidae) and comparison of candidate olfactory genes.
Q28586436	Transcriptome analysis in switchgrass discloses ecotype difference in photosynthetic efficiency
Q92496432	Transcriptome analysis of Actinidia chinensis in response to Botryosphaeria dothidea infection
Q33968461	Transcriptome analysis of Catharanthus roseus for gene discovery and expression profiling
Q45747063	Transcriptome analysis of Crossostephium chinensis provides insight into the molecular basis of salinity stress responses
Q28606801	Transcriptome analysis of Ginkgo biloba kernels
Q84315791	Transcriptome analysis of PK-15 cells in innate immune response to porcine deltacoronavirus infection
Q90147225	Transcriptome analysis of Panax ginseng response to high light stress
Q58763754	Transcriptome analysis of Polianthes tuberosa during floral scent formation
Q47339544	Transcriptome analysis of Pseudomonas sp. from subarctic tundra soil: pathway description and gene discovery for humic acids degradation
Q58613653	Transcriptome analysis of Xenopus orofacial tissues deficient in retinoic acid receptor function
Q64059893	Transcriptome analysis of a rice cultivar reveals the differentially expressed genes in response to wild and mutant strains of Xanthomonas oryzae pv. oryzae
Q64286894	Transcriptome analysis of atemoya pericarp elucidates the role of polysaccharide metabolism in fruit ripening and cracking after harvest
Q47139173	Transcriptome analysis of avian reovirus-mediated changes in gene expression of normal chicken fibroblast DF-1 cells
Q98475328	Transcriptome analysis of biological pathways associated with heterosis in Chinese cabbage
Q30842210	Transcriptome analysis of bronchoalveolar lavage fluid from children with severe Mycoplasma pneumoniae pneumonia reveals novel gene expression and immunodeficiency
Q33891028	Transcriptome analysis of callus from Picea balfouriana
Q28485300	Transcriptome analysis of cytokinin response in tomato leaves
Q58759803	Transcriptome analysis of differentially expressed unigenes involved in flavonoid biosynthesis during flower development of Chrysanthemum morifolium 'Chuju'
Q36242164	Transcriptome analysis of genes involved in defence response in Polyporus umbellatus with Armillaria mellea infection
Q55382813	Transcriptome analysis of genetically matched human induced pluripotent stem cells disomic or trisomic for chromosome 21.
Q89830637	Transcriptome analysis of hepatopancreas of Eriocheir sinensis with hepatopancreatic necrosis disease (HPND)
Q28828661	Transcriptome analysis of maize resistance to Fusarium graminearum
Q90402498	Transcriptome analysis of metabolic pathways associated with oil accumulation in developing seed kernels of Styrax tonkinensis, a woody biodiesel species
Q37264710	Transcriptome analysis of mouse brain infected with Toxoplasma gondii
Q44772227	Transcriptome analysis of normal and mantled developing oil palm flower and fruit.
Q36317537	Transcriptome analysis of pancreatic cells across distant species highlights novel important regulator genes
Q57279836	Transcriptome analysis of radish sprouts hypocotyls reveals the regulatory role of hydrogen-rich water in anthocyanin biosynthesis under UV-A
Q93098518	Transcriptome analysis of regeneration during Xenopus laevis experimental twinning
Q35119653	Transcriptome analysis of resistant and susceptible alfalfa cultivars infected with root-knot nematode Meloidogyne incognita.
Q91903703	Transcriptome analysis of rice (Oryza sativa L.) shoots responsive to cadmium stress
Q34677031	Transcriptome analysis of ripe and unripe fruit tissue of banana identifies major metabolic networks involved in fruit ripening process.
Q42362056	Transcriptome analysis of sex-related genes in the blood clam Tegillarca granosa
Q36286564	Transcriptome analysis of the Brassica napus-Leptosphaeria maculans pathosystem identifies receptor, signaling and structural genes underlying plant resistance
Q40877226	Transcriptome analysis of the oriental melon (Cucumis melo L. var. makuwa) during fruit development
Q34640139	Transcriptome analysis of the parasite Encephalitozoon cuniculi: an in-depth examination of pre-mRNA splicing in a reduced eukaryote
Q47992196	Transcriptome analysis of the thermotolerant yeast Kluyveromyces marxianus CCT 7735 under ethanol stress
Q55023706	Transcriptome analysis of the typical freshwater rhodophytes Sheathia arcuata grown under different light intensities.
Q37343761	Transcriptome analysis of trigeminal ganglia following masseter muscle inflammation in rats
Q34985035	Transcriptome analysis of two buffalograss cultivars
Q64092576	Transcriptome analysis of two cultivars of tobacco in response to Cucumber mosaic virus infection
Q36278804	Transcriptome analysis of two recombinant inbred lines of common bean contrasting for symbiotic nitrogen fixation
Q42776718	Transcriptome analysis revealed impaired cAMP responsiveness in PHF21A-deficient human cells
Q92497050	Transcriptome analysis revealed potential mechanisms of differences in physiological stress responses between caged male and female magpies
Q36108289	Transcriptome analysis revealed that a quorum sensing system regulates the transfer of the pAt megaplasmid in Agrobacterium tumefaciens.
Q40844750	Transcriptome analysis reveals a classical interferon signature induced by IFNλ4 in human primary cells.
Q59332876	Transcriptome analysis reveals a composite molecular map linked to unique seed oil profile of Neocinnamomum caudatum (Nees) Merr
Q37296211	Transcriptome analysis reveals a comprehensive insect resistance response mechanism in cotton to infestation by the phloem feeding insect Bemisia tabaci (whitefly).
Q49274047	Transcriptome analysis reveals carbohydrate-mediated liver immune responses in Epinephelus akaara.
Q52648646	Transcriptome analysis reveals differential splicing events in IPF lung tissue.
Q88127010	Transcriptome analysis reveals in vitro-cultured regeneration bulbs as a promising source for targeted Fritillaria cirrhosa steroidal alkaloid biosynthesis
Q111349141	Transcriptome analysis reveals molecular strategies of Bactrocera dorsalis (Hendel) larvae in response to anoxia
Q34579806	Transcriptome analysis reveals novel regulatory mechanisms in a genome-reduced bacterium.
Q33560655	Transcriptome analysis reveals potential mechanisms underlying differential heart development in fast- and slow-growing broilers under heat stress
Q36113294	Transcriptome analysis reveals that constant heat stress modifies the metabolism and structure of the porcine longissimus dorsi skeletal muscle
Q104073625	Transcriptome analysis reveals that exogenous ethylene activates immune and defense responses in a high late blight resistant potato genotype
Q93087629	Transcriptome analysis reveals the different compatibility between LAAA × AA and LAAA × LL in Lilium
Q36205849	Transcriptome analysis reveals the genetic basis underlying the seasonal development of keratinized nuptial spines in Leptobrachium boringii
Q92029392	Transcriptome analysis reveals the mechanism by which spraying diethyl aminoethyl hexanoate after anthesis regulates wheat grain filling
Q91410766	Transcriptome analysis reveals the pigmentation related genes in four different shell color strains of the Manila clam Ruditapes philippinarum
Q100464649	Transcriptome analysis uncovers the diagnostic value of miR-192-5p/HNF1A-AS1/VIL1 panel in cervical adenocarcinoma
Q90664431	Transcriptome analysis uncovers the gene expression profile of salt-stressed potato (Solanum tuberosum L.).
Q36627379	Transcriptome and Biochemical Analysis of a Flower Color Polymorphism in Silene littorea (Caryophyllaceae).
Q47610164	Transcriptome and Functional Profile of Cardiac Myocytes Is Influenced by Biological Sex.
Q91781656	Transcriptome and Metabolome Reprogramming in Tomato Plants by Trichoderma harzianum strain T22 Primes and Enhances Defense Responses Against Aphids
Q61803826	Transcriptome and Proteome Alternation With Resistance to Cry1Ah Toxin in
Q91656579	Transcriptome and chromatin accessibility in porcine intestinal epithelial cells upon Zearalenone exposure
Q34990447	Transcriptome and histopathological changes in mouse brain infected with Neospora caninum
Q47104774	Transcriptome and metabolite analyses reveal the complex metabolic genes involved in volatile terpenoid biosynthesis in garden sage (Salvia officinalis).
Q64237397	Transcriptome and metabolome analyses of two contrasting sesame genotypes reveal the crucial biological pathways involved in rapid adaptive response to salt stress
Q91819127	Transcriptome and microbiome of coconut rhinoceros beetle (Oryctes rhinoceros) larvae
Q39078009	Transcriptome and proteome analyses reveal complex mechanisms of reproductive diapause in the two-spotted spider mite, Tetranychus urticae
Q39328255	Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice.
Q94569499	Transcriptome and translatome profiles of Streptomyces species in different growth phases
Q27322524	Transcriptome changes in Eriocheir sinensis megalopae after desalination provide insights into osmoregulation and stress adaption in larvae
Q89460324	Transcriptome changes in muscle of Nellore cows submitted to recovery weight gain under grazing condition
Q90667450	Transcriptome changes in the phenylpropanoid pathway in senescing leaves of Toona sinensis
Q55074467	Transcriptome changes induced by abiotic stresses in Artemisia annua.
Q34277551	Transcriptome characterization by RNA-seq unravels the mechanisms of butyrate-induced epigenomic regulation in bovine cells
Q35009147	Transcriptome comparison of human neurons generated using induced pluripotent stem cells derived from dental pulp and skin fibroblasts
Q41017168	Transcriptome differences between enrofloxacin-resistant and enrofloxacin-susceptible strains of Aeromonas hydrophila.
Q33669213	Transcriptome differences between two sister desert poplar species under salt stress
Q35332631	Transcriptome dynamics of the stomatal lineage: birth, amplification, and termination of a self-renewing population.
Q93199669	Transcriptome for the breast muscle of Jinghai yellow chicken at early growth stages
Q34397195	Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue
Q27310102	Transcriptome markers of viral persistence in naturally-infected andes virus (bunyaviridae) seropositive long-tailed pygmy rice rats
Q33642152	Transcriptome microRNA profiling of bovine mammary epithelial cells challenged with Escherichia coli or Staphylococcus aureus bacteria reveals pathogen directed microRNA expression profiles
Q92596171	Transcriptome of dorsal root ganglia caudal to a spinal cord injury with modulated behavioral activity
Q39957055	Transcriptome of the inner circular smooth muscle of the developing mouse intestine: Evidence for regulation of visceral smooth muscle genes by the hedgehog target gene, cJun
Q28601588	Transcriptome of the quorum-sensing signal-degrading Rhodococcus erythropolis responds differentially to virulent and avirulent Pectobacterium atrosepticum
Q35674997	Transcriptome organization for chronic alcohol abuse in human brain.
Q35882608	Transcriptome outlier analysis implicates schizophrenia susceptibility genes and enriches putatively functional rare genetic variants
Q40178395	Transcriptome profile analysis of cell proliferation molecular processes during multicellular trichome formation induced by tomato Wo (v) gene in tobacco
Q35822093	Transcriptome profile analysis of cell proliferation molecular processes during multicellular trichome formation induced by tomato Wov gene in tobacco
Q58601620	Transcriptome profile analysis of leg muscle tissues between slow- and fast-growing chickens
Q31131727	Transcriptome profile at different physiological stages reveals potential mode for curly fleece in Chinese tan sheep
Q60044851	Transcriptome profile in bursa of Fabricius reveals potential mode for stress-influenced immune function in chicken stress model
Q45324818	Transcriptome profile of lung dendritic cells after in vitro porcine reproductive and respiratory syndrome virus (PRRSV) infection.
Q47141221	Transcriptome profiling and digital gene expression analysis of sweet potato for the identification of putative genes involved in the defense response against Fusarium oxysporum f. sp. batatas
Q90751120	Transcriptome profiling and environmental linkage to salinity across Salicornia europaea vegetation
Q90729925	Transcriptome profiling and identification of functional genes involved in H2S response in grapevine tissue cultured plantlets
Q55445629	Transcriptome profiling by RNA-Seq reveals differentially expressed genes related to fruit development and ripening characteristics in strawberries (Fragaria × ananassa).
Q35756766	Transcriptome profiling during a natural host-parasite interaction.
Q33361741	Transcriptome profiling for discovery of genes involved in shoot apical meristem and flower development
Q40088799	Transcriptome profiling in oral cavity and esophagus tissues from (S)-N'-nitrosonornicotine-treated rats reveals candidate genes involved in human oral cavity and esophageal carcinogenesis.
Q37633539	Transcriptome profiling of Galaxea fascicularis and its endosymbiont Symbiodinium reveals chronic eutrophication tolerance pathways and metabolic mutualism between partners
Q35892148	Transcriptome profiling of Kentucky bluegrass (Poa pratensis L.) accessions in response to salt stress
Q89072616	Transcriptome profiling of PeCRY1 transgenic Populus tomentosa
Q34295443	Transcriptome profiling of citrus fruit response to huanglongbing disease
Q46689269	Transcriptome profiling of claw muscle of the mud crab (Scylla paramamosain) at different fattening stages
Q36523835	Transcriptome profiling of cytokinin and auxin regulation in tomato root
Q94450749	Transcriptome profiling of developing testes and spermatogenesis in the Mongolian horse
Q36267794	Transcriptome profiling of expression changes during neuronal death by RNA-Seq
Q35951917	Transcriptome profiling of gene expression in fall dormant and nondormant alfalfa.
Q42778117	Transcriptome profiling of individual rhesus macaque oocytes and preimplantation embryos.
Q90483129	Transcriptome profiling of kenaf (Hibiscus cannabinus L.) under plumbic stress conditions implies the involvement of NAC transcription factors regulating reactive oxygen species-dependent programmed cell death
Q34207977	Transcriptome profiling of natural dichromatism in the annual fishes Nothobranchius furzeri and Nothobranchius kadleci
Q48269670	Transcriptome profiling of pumpkin (Cucurbita moschata Duch.) leaves infected with powdery mildew
Q35805180	Transcriptome profiling of wheat glumes in wild emmer, hulled landraces and modern cultivars
Q57092550	Transcriptome profiling provides insights into dormancy release during cold storage of Lilium pumilum
Q33693865	Transcriptome profiling revealed novel transcriptional regulators in maize responses to Ostrinia furnacalis and jasmonic acid
Q21132007	Transcriptome profiling reveals higher vertebrate orthologous of intra-cytoplasmic pattern recognition receptors in grey bamboo shark
Q47549846	Transcriptome profiling reveals infection strategy of an insect maculavirus.
Q38788545	Transcriptome profiling reveals novel BMI- and sex-specific gene expression signatures for human cardiac hypertrophy
Q92127826	Transcriptome profiling reveals the response process of tomato carrying Cf-19 and Cladosporium fulvum interaction
Q61444166	Transcriptome profiling reveals the role of ZBTB38 knock-down in human neuroblastoma
Q34325986	Transcriptome reconstruction and annotation of cynomolgus and African green monkey
Q59187433	Transcriptome remodeling of Pseudomonas putida KT2440 during mcl-PHAs synthesis: effect of different carbon sources and response to nitrogen stress
Q42364594	Transcriptome reprogramming during developmental switching in Physarum polycephalum involves extensive remodeling of intracellular signaling networks.
Q53691259	Transcriptome reprogramming of resistant and susceptible peach genotypes during Xanthomonas arboricola pv. pruni early leaf infection.
Q60922734	Transcriptome reprogramming, epigenetic modifications and alternative splicing orchestrate the tomato root response to the beneficial fungus
Q34799487	Transcriptome resources for the white-footed mouse (Peromyscus leucopus): new genomic tools for investigating ecologically divergent urban and rural populations
Q37189099	Transcriptome response of cassava leaves under natural shade.
Q34228535	Transcriptome responses of insect fat body cells to tissue culture environment
Q28596926	Transcriptome responses to temperature, water availability and photoperiod are conserved among mature trees of two divergent Douglas-fir provenances from a coastal and an interior habitat
Q28681178	Transcriptome sequence and plasmid copy number analysis of the brewery isolate Pediococcus claussenii ATCC BAA-344 T during growth in beer
Q42573571	Transcriptome sequencing (RNA-seq) analysis of the effects of metal nanoparticle exposure on the transcriptome of Chlamydomonas reinhardtii
Q64093836	Transcriptome sequencing analysis of maize embryonic callus during early redifferentiation
Q35560970	Transcriptome sequencing and characterization of Japanese scallop Patinopecten yessoensis from different shell color lines
Q64117549	Transcriptome sequencing and comparative analysis of adult ovary and testis identify potential gonadal maintenance-related genes in with temperature-dependent sex determination
Q36187696	Transcriptome sequencing and metabolite analysis for revealing the blue flower formation in waterlily
Q35001364	Transcriptome sequencing and whole genome expression profiling of chrysanthemum under dehydration stress
Q35077168	Transcriptome sequencing of Chinese and Caucasian population identifies ethnic-associated differential transcript abundance of heterogeneous nuclear ribonucleoprotein K (hnRNPK).
Q34361771	Transcriptome sequencing of Eucalyptus camaldulensis seedlings subjected to water stress reveals functional single nucleotide polymorphisms and genes under selection
Q88373025	Transcriptome sequencing of active buds from Populus deltoides CL. and Populus × zhaiguanheibaiyang reveals phytohormones involved in branching
Q37182400	Transcriptome sequencing of gingival biopsies from chronic periodontitis patients reveals novel gene expression and splicing patterns
Q41808602	Transcriptome sequencing revealed differences in the response of renal cancer cells to hypoxia and CoCl 2 treatment
Q35577014	Transcriptome sequencing reveals potential mechanism of cryptic 3' splice site selection in SF3B1-mutated cancers
Q64109874	Transcriptome signatures associated with meningioma progression
Q46242438	Transcriptome signatures of tomato leaf induced by Phytophthora infestans and functional identification of transcription factor SpWRKY3.
Q36593582	Transcriptome-Wide Analysis of Hepatitis B Virus-Mediated Changes to Normal Hepatocyte Gene Expression
Q90134796	Transcriptome-based identification and characterization of genes responding to imidacloprid in Myzus persicae
Q92665817	Transcriptome-based screening of intracellular pathways and angiogenesis related genes at different stages of thiram induced tibial lesions in broiler chickens
Q33635320	Transcriptome-wide Investigation of mRNA/circRNA in miR-184 and Its r.57c > u Mutant Type Treatment of Human Lens Epithelial Cells
Q64070572	Transcriptome-wide analysis of differentially expressed chemokine receptors, SNPs, and SSRs in the age-related macular degeneration
Q34260490	Transcriptome-wide analysis of small RNA expression in early zebrafish development
Q34842023	Transcriptome-wide analysis of trypanosome mRNA decay reveals complex degradation kinetics and suggests a role for co-transcriptional degradation in determining mRNA levels
Q34277521	Transcriptome-wide changes in Chlamydomonas reinhardtii gene expression regulated by carbon dioxide and the CO2-concentrating mechanism regulator CIA5/CCM1.
Q36269609	Transcriptome-wide co-expression analysis identifies LRRC2 as a novel mediator of mitochondrial and cardiac function.
Q34720781	Transcriptome-wide modulation of splicing by the exon junction complex
Q34530150	Transcriptome-wide profiling and posttranscriptional analysis of hematopoietic stem/progenitor cell differentiation toward myeloid commitment
Q48509474	Transcriptome-wide survey of gene expression changes and alternative splicing in Trichophyton rubrum in response to undecanoic acid.
Q35152037	Transcriptomes and shRNA suppressors in a TP53 allele-specific model of early-onset colon cancer in African Americans
Q36417105	Transcriptomes of newly-isolated Trypanosoma brucei rhodesiense reveal hundreds of mRNAs that are co-regulated with stumpy-form markers
Q89510672	Transcriptomic Analyses of Camellia oleifera 'Huaxin' Leaf Reveal Candidate Genes Related to Long-Term Cold Stress
Q47212298	Transcriptomic Analyses of Scrippsiella trochoidea Reveals Processes Regulating Encystment and Dormancy in the Life Cycle of a Dinoflagellate, with a Particular Attention to the Role of Abscisic Acid
Q92629990	Transcriptomic Analyses of the Hypothalamic-Pituitary-Gonadal Axis Identify Candidate Genes Related to Egg Production in Xinjiang Yili Geese
Q36016581	Transcriptomic Analysis Identifies Candidate Genes Related to Intramuscular Fat Deposition and Fatty Acid Composition in the Breast Muscle of Squabs (Columba).
Q36855695	Transcriptomic Analysis Reveals Adaptive Responses of an Enterobacteriaceae Strain LSJC7 to Arsenic Exposure
Q41622618	Transcriptomic Analysis Reveals Genes Mediating Salt Tolerance through Calcineurin/CchA-Independent Signaling in Aspergillus nidulans
Q37672400	Transcriptomic Analysis Reveals Mechanisms of Sterile and Fertile Flower Differentiation and Development in Viburnum macrocephalum f. keteleeri
Q64987989	Transcriptomic Analysis Reveals a Comprehensive Calcium- and Phytohormone-Dominated Signaling Response in Leymus chinensis Self-Incompatibility.
Q28555095	Transcriptomic Analysis Shows Decreased Cortical Expression of NR4A1, NR4A2 and RXRB in Schizophrenia and Provides Evidence for Nuclear Receptor Dysregulation
Q38934850	Transcriptomic Analysis and the Expression of Disease-Resistant Genes in Oryza meyeriana under Native Condition
Q33754833	Transcriptomic Analysis of Calcium Remodeling in Colorectal Cancer
Q64121062	Transcriptomic Analysis of Coding Genes and Non-Coding RNAs Reveals Complex Regulatory Networks Underlying the Black Back and White Belly Coat Phenotype in Chinese Wuzhishan Pigs
Q36085595	Transcriptomic Analysis of Compromise Between Air-Breathing and Nutrient Uptake of Posterior Intestine in Loach (Misgurnus anguillicaudatus), an Air-Breathing Fish
Q36021975	Transcriptomic Analysis of Differentially Expressed Genes During Larval Development of Rapana venosa by Digital Gene Expression Profiling
Q35944985	Transcriptomic Analysis of Differentially Expressed Genes during Flower Organ Development in Genetic Male Sterile and Male Fertile Tagetes erecta by Digital Gene-Expression Profiling
Q64922527	Transcriptomic Analysis of Leaf Sheath Maturation in Maize.
Q30367587	Transcriptomic Analysis of Mouse Cochlear Supporting Cell Maturation Reveals Large-Scale Changes in Notch Responsiveness Prior to the Onset of Hearing.
Q36082926	Transcriptomic Analysis of Multipurpose Timber Yielding Tree Neolamarckia cadamba during Xylogenesis Using RNA-Seq
Q93182206	Transcriptomic Analysis of Orange Fruit Treated with Pomegranate Peel Extract (PGE)
Q42368463	Transcriptomic Analysis of the Adaptation of Listeria monocytogenes to Lagoon and Soil Matrices Associated with a Piggery Environment: Comparison of Expression Profiles
Q35808881	Transcriptomic Analysis of the Mouse Mammary Gland Reveals New Insights for the Role of Serotonin in Lactation
Q34047358	Transcriptomic Changes Associated with Pregnancy in a Marsupial, the Gray Short-Tailed Opossum Monodelphis domestica.
Q36747710	Transcriptomic Changes Drive Physiological Responses to Progressive Drought Stress and Rehydration in Tomato
Q47563352	Transcriptomic Changes Following Valproic Acid Treatment Promote Neurogenesis and Minimize Secondary Brain Injury
Q46697501	Transcriptomic Changes in Response to Putrescine Production in Metabolically Engineered Corynebacterium glutamicum
Q35826296	Transcriptomic Characterization of an Infection of Mycobacterium smegmatis by the Cluster A4 Mycobacteriophage Kampy
Q33634224	Transcriptomic Identification of Drought-Related Genes and SSR Markers in Sudan Grass Based on RNA-Seq
Q93082207	Transcriptomic Insights into the Response of the Olfactory Bulb to Selenium Treatment in a Mouse Model of Alzheimer's Disease
Q28386427	Transcriptomic Profile of Whole Blood Cells from Elderly Subjects Fed Probiotic Bacteria Lactobacillus rhamnosus GG ATCC 53103 (LGG) in a Phase I Open Label Study
Q37716812	Transcriptomic Profiles Reveal the Interactions of Cd/Zn in Dwarf Polish Wheat (Triticum polonicum L.) Roots
Q38670701	Transcriptomic Profiling in Human Decidua of Severe Preeclampsia Detected by RNA Sequencing
Q92286630	Transcriptomic Profiling of 3D Glioblastoma Tumoroids for the Identification of Mechanisms Involved in Anticancer Drug Resistance
Q91942611	Transcriptomic Profiling of Duodenal Epithelium Reveals Temporally Dynamic Impacts of Direct Duodenal Starch-Infusion During Dry Period of Dairy Cattle
Q55040248	Transcriptomic Profiling of Zebrafish Hair Cells Using RiboTag.
Q42235795	Transcriptomic Profiling of the Allorecognition Response to Grafting in the Demosponge Amphimedon queenslandica.
Q33362782	Transcriptomic Signature of the SHATTERPROOF2 Expression Domain Reveals the Meristematic Nature of Arabidopsis Gynoecial Medial Domain
Q92459437	Transcriptomic Signatures of Postnatal and Adult Intrinsically Photosensitive Ganglion Cells
Q36189729	Transcriptomic Variation during Spermiogenesis in Mouse Germ Cells
Q57298713	Transcriptomic analyses identify albino-associated genes of a novel albino tea germplasm 'Huabai 1'
Q58751820	Transcriptomic analyses of cacao cell suspensions in light and dark provide target genes for controlled flavonoid production
Q42773836	Transcriptomic analyses of genes and tissues in inherited sensory neuropathies.
Q47216582	Transcriptomic analyses reveal molecular mechanisms underlying growth heterosis and weakness of rubber tree seedlings
Q90216463	Transcriptomic analysis and identification of prognostic biomarkers in cholangiocarcinoma
Q54980238	Transcriptomic analysis between self- and cross-pollinated pistils of tea plants (Camellia sinensis).
Q33999325	Transcriptomic analysis brings new insight into the biological role of the prion protein during mouse embryogenesis
Q34320280	Transcriptomic analysis identifies gene networks regulated by estrogen receptor α (ERα) and ERβ that control distinct effects of different botanical estrogens
Q49852796	Transcriptomic analysis of Bama pig's liver in various nutritional states reveals a metabolic difference of fatty acids.
Q64267976	Transcriptomic analysis of Rhizobium leguminosarum bacteroids in determinate and indeterminate nodules
Q40523019	Transcriptomic analysis of Shiga-toxigenic bacteriophage carriage reveals a profound regulatory effect on acid resistance in Escherichia coli
Q35081139	Transcriptomic analysis of brown adipose tissue across the physiological extremes of natural hibernation
Q28685176	Transcriptomic analysis of cultured whale skin cells exposed to hexavalent chromium [Cr(VI)]
Q64060884	Transcriptomic analysis of different tissue layers in antler growth Center in Sika Deer (Cervus nippon)
Q30410893	Transcriptomic analysis of differential host gene expression upon uptake of symbionts: a case study with Symbiodinium and the major bioeroding sponge Cliona varians
Q35155521	Transcriptomic analysis of differentially expressed genes in an orange-pericarp mutant and wild type in pummelo (Citrus grandis)
Q91733932	Transcriptomic analysis of differentially expressed genes in the oviduct of Rhacophorus omeimontis provides insights into foam nest construction
Q58787159	Transcriptomic analysis of drought stress responses of sea buckthorn (Hippophae rhamnoidessubsp. sinensis) by RNA-Seq
Q93010182	Transcriptomic analysis of early B-cell development in the chicken embryo
Q91595086	Transcriptomic analysis of female and male gonads in juvenile snakeskin gourami (Trichopodus pectoralis)
Q64089388	Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth
Q91784747	Transcriptomic analysis of gills provides insights into the molecular basis of molting in Chinese mitten crab (Eriocheir sinensis)
Q42067421	Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate Orpinomyces sp. strain C1A.
Q64937451	Transcriptomic analysis of resistant and susceptible banana corms in response to infection by Fusarium oxysporum f. sp. cubense tropical race 4.
Q34070791	Transcriptomic analysis of tail regeneration in the lizard Anolis carolinensis reveals activation of conserved vertebrate developmental and repair mechanisms
Q55341000	Transcriptomic analysis of the liver of cholesterol-fed rabbits reveals altered hepatic lipid metabolism and inflammatory response.
Q36548104	Transcriptomic analysis of the oleaginous microalga Neochloris oleoabundans reveals metabolic insights into triacylglyceride accumulation
Q35219055	Transcriptomic analysis of three Veillonella spp. present in carious dentine and in the saliva of caries-free individuals
Q35677592	Transcriptomic analysis of vulvovaginal candidiasis identifies a role for the NLRP3 inflammasome
Q58698775	Transcriptomic analysis reveal an efficient osmoregulatory system in Siberian sturgeon Acipenser baeri in response to salinity stress
Q55239040	Transcriptomic analysis reveals Toxoplasma gondii strain-specific differences in host cell response to dense granule protein GRA15.
Q90588045	Transcriptomic analysis reveals candidate genes regulating development and host interactions of Colletotrichum fructicola
Q36059961	Transcriptomic analysis reveals importance of ROS and phytohormones in response to short-term salinity stress in Populus tomentosa
Q64052051	Transcriptomic analysis reveals insights into deep-sea adaptations of the dominant species, Shinkaia crosnieri (Crustacea: Decapoda: Anomura), inhabiting both hydrothermal vents and cold seeps
Q91834681	Transcriptomic analysis reveals key factors in fruit ripening and rubbery texture caused by 1-MCP in papaya
Q54483242	Transcriptomic analysis reveals overdominance playing a critical role in nicotine heterosis in Nicotiana tabacum L.
Q38432059	Transcriptomic analysis to uncover genes affecting cold resistance in the Chinese honey bee (Apis cerana cerana)
Q92987897	Transcriptomic and Metabolomics Analysis of Different Endosperm Region under Nitrogen Treatments
Q39764784	Transcriptomic and genetic analysis of direct interspecies electron transfer
Q35076247	Transcriptomic and genomic evidence for Streptococcus agalactiae adaptation to the bovine environment.
Q40995826	Transcriptomic and metabolomic profiles of Chinese citrus fly, Bactrocera minax (Diptera: Tephritidae), along with pupal development provide insight into diapause program.
Q64972845	Transcriptomic and metabolomic profiling of drought-tolerant and susceptible sesame genotypes in response to drought stress.
Q91610666	Transcriptomic and microstructural analyses in Liriodendron tulipifera Linn. reveal candidate genes involved in nectary development and nectar secretion
Q35993146	Transcriptomic and physiological analysis of common duckweed Lemna minor responses to NH4(+) toxicity
Q64915689	Transcriptomic and proteomic analyses of genetic factors influencing adductor muscle coloration in QN Orange scallops.
Q34955777	Transcriptomic and proteomic analyses reveal key innate immune signatures in the host response to the gastrointestinal pathogen Campylobacter concisus
Q47353742	Transcriptomic and proteomic feature of salt stress-regulated network in Jerusalem artichoke (Helianthus tuberosus L.) root based on de novo assembly sequencing analysis
Q36358448	Transcriptomic and proteomic insight into the effects of a defined European mistletoe extract in Ewing sarcoma cells reveals cellular stress responses
Q34500707	Transcriptomic changes during regeneration of the central nervous system in an echinoderm
Q36268536	Transcriptomic characterization of fibrolamellar hepatocellular carcinoma
Q28652852	Transcriptomic characterization of the immunogenetic repertoires of heteromyid rodents
Q64053199	Transcriptomic comparison between developing seeds of yellow- and black-seeded Brassica napus reveals that genes influence seed quality
Q35805574	Transcriptomic comparison of the self-pollinated and cross-pollinated flowers of Erigeron breviscapus to analyze candidate self-incompatibility-associated genes
Q94528200	Transcriptomic data indicating differential expressed genes between HIV-1 Associated Nephropathy (HIVAN) mouse model (Tg26) and wildtype mice
Q97681418	Transcriptomic differences between male and female Trachycarpus fortunei
Q87911938	Transcriptomic dissection of the horizontally acquired response regulator EsrB reveals its global regulatory roles in the physiological adaptation and activation of T3SS and the cognate effector repertoire in Edwardsiella piscicida during infection
Q35237274	Transcriptomic dissection of the rice-Burkholderia glumae interaction.
Q36284318	Transcriptomic dynamics of breast cancer progression in the MMTV-PyMT mouse model.
Q37712241	Transcriptomic evaluation of the nicotinic acetylcholine receptor pathway in levamisole-resistant and -sensitive Oesophagostomum dentatum.
Q33716778	Transcriptomic evidence for a dramatic functional transition of the malpighian tubules after a blood meal in the Asian tiger mosquito Aedes albopictus
Q36246605	Transcriptomic evidence for the control of soybean root isoflavonoid content by regulation of overlapping phenylpropanoid pathways
Q38450484	Transcriptomic features associated with energy production in the muscles of Pacific bluefin tuna and Pacific cod.
Q59135889	Transcriptomic insights into the early host-pathogen interaction of cat intestine with Toxoplasma gondii
Q36320829	Transcriptomic insights into the genetic basis of mammalian limb diversity
Q35755270	Transcriptomic landscape of breast cancers through mRNA sequencing.
Q34875987	Transcriptomic portrait of human Mesenchymal Stromal/Stem Cells isolated from bone marrow and placenta
Q40274189	Transcriptomic profile of tobacco in response to Phytophthora nicotianae infection
Q89513685	Transcriptomic profiles of Dunaliella salina in response to hypersaline stress
Q40806851	Transcriptomic profiling of Alexandrium fundyense during physical interaction with or exposure to chemical signals from the parasite Amoebophrya.
Q48148936	Transcriptomic profiling of Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG19424 and Rhizobium mesoamericanum STM3625 in response to Mimosa pudica root exudates illuminates the molecular basis of their nodulation competitiveness and symbio
Q34468976	Transcriptomic profiling of Yersinia pseudotuberculosis reveals reprogramming of the Crp regulon by temperature and uncovers Crp as a master regulator of small RNAs
Q90617475	Transcriptomic profiling of cotton Gossypium hirsutum challenged with low-temperature gradients stress
Q41107990	Transcriptomic profiling of genes in matured dimorphic seeds of euhalophyte Suaeda salsa
Q35066465	Transcriptomic profiling of rat liver samples in a comprehensive study design by RNA-Seq
Q60921276	Transcriptomic profiling reveals molecular regulation of seasonal reproduction in Tibetan highland fish, Gymnocypris przewalskii
Q34074634	Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species
Q40369693	Transcriptomic response during phage infection of a marine cyanobacterium under phosphorus-limited conditions
Q55315735	Transcriptomic response to GABA-producing Lactobacillus plantarum CGMCC 1.2437T induced by L-MSG.
Q36287225	Transcriptomic responses of the olive fruit fly Bactrocera oleae and its symbiont Candidatus Erwinia dacicola to olive feeding
Q37618742	Transcriptomic responses of water buffalo liver to infection with the digenetic fluke Fasciola gigantica
Q31158397	Transcriptomic responses to seawater acidification among sea urchin populations inhabiting a natural pH mosaic
Q87858871	Transcriptomic sequencing reveals diverse adaptive gene expression responses of human vascular smooth muscle cells to nitro-conjugated linoleic acid
Q99564892	Transcriptomic sex differences in sensory neuronal populations of mice
Q39006630	Transcriptomic signatures for ovulation in vertebrates
Q57697189	Transcriptomic signatures of schizophrenia revealed by dopamine perturbation in an ex vivo model
Q96303581	Transcriptomic study in women with trisomy 21 identifies a possible role of the GTPases of the immunity-associated proteins (GIMAP) in the protection of breast cancer
Q53691564	Transcriptomic study to understand thermal adaptation in a high temperature-tolerant strain of Pyropia haitanensis.
Q37165815	Transcriptomic variation of pharmacogenes in multiple human tissues and lymphoblastoid cell lines
Q55348009	Transcriptomic, Proteomic, and Bioelectrochemical Characterization of an Exoelectrogen Geobacter soli Grown With Different Electron Acceptors.
Q31161856	Transcriptomic, cellular and life-history responses of Daphnia magna chronically exposed to benzotriazoles: Endocrine-disrupting potential and molting effects
Q38406700	Transcriptomic, proteomic, and metabolomic landscape of positional memory in the caudal fin of zebrafish
Q33586152	Transcriptomics Analyses Reveal Wheat Responses to Drought Stress during Reproductive Stages under Field Conditions
Q89185796	Transcriptomics Analysis of the Chinese Pear Pathotype of Alternaria alternata Gives Insights into Novel Mechanisms of HSAF Antifungal Activities
Q50131815	Transcriptomics Sequencing Provides Insights into Understanding the Mechanism of Grass Carp Reovirus Infection.
Q64079266	Transcriptomics and differential gene expression in (Annelida: Clitellata: Hirudinida: Hirudinidae): Contrasting feeding and fasting modes
Q89837940	Transcriptomics at Maize Embryo/Endosperm Interfaces Identifies a Transcriptionally Distinct Endosperm Sub-domain Adjacent to the Embryo Scutellum
Q37416116	Transcriptomics of Environmental Enrichment Reveals a Role for Retinoic Acid Signaling in Addiction.
Q35362397	Transcriptomics of desiccation tolerance in the streptophyte green alga Klebsormidium reveal a land plant-like defense reaction
Q38267169	Transcriptomics of developing embryos and organs: A raising tool for evo-devo
Q30455472	Transcriptomics of morphological color change in polychromatic Midas cichlids.
Q35076038	Transcriptomics of salinity tolerance capacity in Arctic charr (Salvelinus alpinus): a comparison of gene expression profiles between divergent QTL genotypes
Q35115974	Transcriptomics of two evolutionary novelties: how to make a sperm-transfer organ out of an anal fin and a sexually selected "sword" out of a caudal fin.
Q21090594	Transcriptomics reveal several gene expression patterns in the piezophile Desulfovibrio hydrothermalis in response to hydrostatic pressure
Q33741744	Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity.
Q64100590	Transcriptomopathies of pre- and post-symptomatic frontotemporal dementia-like mice with TDP-43 depletion in forebrain neurons
Q89143603	Transcripts from downstream alternative transcription start sites evade uORF-mediated inhibition of gene expression in Arabidopsis
Q35785942	Transfer RNA detection by small RNA deep sequencing and disease association with myelodysplastic syndromes
Q92222177	Transforming Endothelium with Platelet-Rich Plasma in Engineered Microvessels
Q30731790	Transforming RNA-Seq data to improve the performance of prognostic gene signatures
Q90134879	Transgenerational inheritance of shuffled symbiont communities in the coral Montipora digitata
Q63642000	Transgenic plants that express the phytoplasma effector SAP11 show altered phosphate starvation and defense responses
Q36560887	Transgressive physiological and transcriptomic responses to light stress in allopolyploid Glycine dolichocarpa (Leguminosae).
Q89115405	Transient Osmotic Perturbation Causes Long-Term Alteration to the Gut Microbiota
Q90340599	Transient activation of AMPK preceding left ventricular pressure overload reduces adverse remodeling and preserves left ventricular function
Q36976476	Transient exposure to low levels of insecticide affects metabolic networks of honeybee larvae
Q92487285	Transition state dynamics during a stochastic fate choice
Q57301623	Transkingdom Networks: A Systems Biology Approach to Identify Causal Members of Host-Microbiota Interactions
Q55640745	Translating Immunopeptidomics to Immunotherapy-Decision-Making for Patient and Personalized Target Selection.
Q36126181	Translation Regulation and RNA Granule Formation after Heat Shock of Procyclic Form Trypanosoma brucei: Many Heat-Induced mRNAs Are also Increased during Differentiation to Mammalian-Infective Forms
Q33551532	Translation of CircRNAs
Q30415732	Translational profiling of clock cells reveals circadianly synchronized protein synthesis
Q38406311	Translational profiling of stress-induced neuroplasticity in the CA3 pyramidal neurons of BDNF Val66Met mice.
Q33778581	Translational regulation of specific mRNAs controls feedback inhibition and survival during macrophage activation
Q35681731	Translational regulation shapes the molecular landscape of complex disease phenotypes.
Q101409823	Translational study of the whole transcriptome in rats and genetic polymorphisms in humans identifies LRP1B and VPS13A as key genes involved in tolerance to cocaine-induced motor disturbances
Q34590429	Transposable element dynamics and PIWI regulation impacts lncRNA and gene expression diversity in Drosophila ovarian cell cultures.
Q37445042	Transposable elements become active and mobile in the genomes of aging mammalian somatic tissues
Q35540124	Transposable elements contribute to activation of maize genes in response to abiotic stress
Q34408012	Transposable elements in TDP-43-mediated neurodegenerative disorders
Q35681994	Transposable elements, mRNA expression level and strand-specificity of small RNAs are associated with non-additive inheritance of gene expression in hybrid plants
Q33667569	Transposon insertion sequencing reveals T4SS as the major genetic trait for conjugation transfer of multi-drug resistance pEIB202 from Edwardsiella
Q51737004	Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination.
Q92505568	Treg-Cell Control of a CXCL5-IL-17 Inflammatory Axis Promotes Hair-Follicle-Stem-Cell Differentiation During Skin-Barrier Repair
Q57455889	Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments
Q92105493	Trichoderma atroviride P1 Colonization of Tomato Plants Enhances Both Direct and Indirect Defense Barriers Against Insects
Q41459768	Trichoderma reesei CRE1-mediated Carbon Catabolite Repression in Re-sponse to Sophorose Through RNA Sequencing Analysis
Q93120524	Trichome regulator SlMIXTA-like directly manipulates primary metabolism in tomato fruit
Q46037062	Trim24-repressed VL30 retrotransposons regulate gene expression by producing noncoding RNA.
Q27310010	Trim33 Binds and Silences a Class of Young Endogenous Retroviruses in the Mouse Testis; a Novel Component of the Arms Race between Retrotransposons and the Host Genome
Q47559127	Triple Vectors Expand AAV Transfer Capacity in the Retina
Q36557126	Triple-layer dissection of the lung adenocarcinoma transcriptome: regulation at the gene, transcript, and exon levels
Q47315507	Troy/TNFRSF19 marks epithelial progenitor cells during mouse kidney development that continue to contribute to turnover in adult kidney
Q41934797	Trypanosoma brucei histone H1 inhibits RNA polymerase I transcription and is important for parasite fitness in vivo
Q33636336	Tryptamine serves as a proligand of the AhR transcriptional pathway whose activation is dependent of monoamine oxidases
Q35042385	Tryptophan-degrading enzymes in tumoral immune resistance
Q64956443	TuBA: Tunable biclustering algorithm reveals clinically relevant tumor transcriptional profiles in breast cancer.
Q92072675	Tudor-domain containing protein 5-like promotes male sexual identity in the Drosophila germline and is repressed in females by Sex lethal
Q37422116	Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures
Q54764898	Tumor-induced Stromal STAT1 Accelerates Breast Cancer via Deregulating Tissue Homeostasis.
Q33881477	Tumoral expression of drug and xenobiotic metabolizing enzymes in breast cancer patients of different ethnicities with implications to personalized medicine.
Q62780607	Tutorial: guidelines for the experimental design of single-cell RNA sequencing studies
Q28308198	Twist1-induced dissemination preserves epithelial identity and requires E-cadherin
Q33358615	Two CCAAT-box-binding transcription factors redundantly regulate early steps of the legume-rhizobia endosymbiosis.
Q92432426	Two Y-chromosome-encoded genes determine sex in kiwifruit
Q42089153	Two factor-based reprogramming of rodent and human fibroblasts into Schwann cells.
Q60927652	Two-State Co-Expression Network Analysis to Identify Genes Related to Salt Tolerance in Thai rice
Q52567344	Two-phase differential expression analysis for single cell RNA-seq.
Q89840861	Type 1 Interferon Responses Underlie Tumor-Selective Replication of Oncolytic Measles Virus
Q39524958	Type of in vitro cultivation influences cytoadhesion, knob structure, protein localization and transcriptome profile of Plasmodium falciparum
Q55317542	UMI-count modeling and differential expression analysis for single-cell RNA sequencing.
Q35899369	UTR introns, antisense RNA and differentially spliced transcripts between Plasmodium yoelii subspecies.
Q33796190	UVB-induced gene expression in the skin of Xiphophorus maculatus Jp 163 B.
Q30352749	Ubiquitin carboxyl-terminal esterase L1 (UCHL1) is associated with stem-like cancer cell functions in pediatric high-grade glioma
Q37309705	Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression
Q64051868	Ubiquitylome study identifies increased histone 2A ubiquitylation as an evolutionarily conserved aging biomarker
Q52663585	Ultraviolet-irradiated endothelial cells secrete stem cell factor and induce epidermal pigmentation.
Q50584195	Uncovering DELLA-Independent Gibberellin Responses by Characterizing New Tomato procera Mutants.
Q39812677	Uncovering a Dual Regulatory Role for Caspases During Endoplasmic Reticulum Stress-induced Cell Death.
Q35924176	Uncovering the pathways underlying whole body regeneration in a chordate model, Botrylloides leachi using de novo transcriptome analysis
Q64087040	Understanding Molecular Mechanisms of the Brain Through Transcriptomics
Q52613219	Understanding sequencing data as compositions: an outlook and review.
Q59329398	Unified Transcriptomic Signature of Arbuscular Mycorrhiza Colonization in Roots of by Integration of Machine Learning, Promoter Analysis, and Direct Merging Meta-Analysis
Q35134186	Unifying immunology with informatics and multiscale biology.
Q30829889	Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis
Q50158602	Unintended Side Effects of Transformation Are Very Rare in Cryptococcus neoformans.
Q34991625	Unique aspects of fiber degradation by the ruminal ethanologen Ruminococcus albus 7 revealed by physiological and transcriptomic analysis
Q41891029	Unique gene program of rat small resistance mesenteric arteries as revealed by deep RNA sequencing.
Q37687468	Unique long non-coding RNA expression signature in ETV6/RUNX1-driven B-cell precursor acute lymphoblastic leukemia
Q58763814	Unique microglia recovery population revealed by single-cell RNAseq following neurodegeneration
Q34408727	Universal count correction for high-throughput sequencing
Q41243144	Unraveling a tumor type-specific regulatory core underlying E2F1-mediated epithelial-mesenchymal transition to predict receptor protein signatures
Q37264077	Unraveling the molecular basis of temperature-dependent genetic regulation in Penicillium marneffei
Q40626175	Unravelling post-transcriptional PrmC-dependent regulatory mechanisms in Pseudomonas aeruginosa.
Q42411828	Unsaturated fatty acids as high-affinity ligands of the C-terminal Per-ARNT-Sim domain from the Hypoxia-inducible factor 3α.
Q56985300	Unsupervised correction of gene-independent cell responses to CRISPR-Cas9 targeting
Q38904899	Unveiling Another Missing Piece in EBV-Driven Lymphomagenesis: EBV-Encoded MicroRNAs Expression in EBER-Negative Burkitt Lymphoma Cases
Q37738344	Unveiling DNA structural features of promoters associated with various types of TSSs in prokaryotic transcriptomes and their role in gene expression
Q37543669	Unveiling the mechanism by which microsporidian parasites prevent locust swarm behavior
Q35692150	Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease
Q60047602	Up-Regulation of hsa-miR-210 Promotes Venous Metastasis and Predicts Poor Prognosis in Hepatocellular Carcinoma
Q64989816	Up-regulation of GhTT2-3A in cotton fibres during secondary wall thickening results in brown fibres with improved quality.
Q97530413	Up-regulation of autophagy by low concentration of salicylic acid delays methyl jasmonate-induced leaf senescence
Q88008521	Upregulation of transcripts for metabolism in diverse environments is a shared response associated with survival and adaptation of Klebsiella pneumoniae in response to temperature extremes
Q35065487	Ups and downs of a transcriptional landscape shape iron deficiency associated chlorosis of the maize inbreds B73 and Mo17
Q34480762	Urocortin3 mediates somatostatin-dependent negative feedback control of insulin secretion
Q33562286	Use of Bru-Seq and BruChase-Seq for genome-wide assessment of the synthesis and stability of RNA
Q26864197	Use of RNA sequencing to evaluate rheumatic disease patients
Q35025533	Use of a capture-based pathogen transcript enrichment strategy for RNA-Seq analysis of the Francisella tularensis LVS transcriptome during infection of murine macrophages
Q26766432	Using "Omics" and Integrated Multi-Omics Approaches to Guide Probiotic Selection to Mitigate Chytridiomycosis and Other Emerging Infectious Diseases
Q64271769	Using Next-Generation Sequencing Transcriptomics To Determine Markers of Post-traumatic Symptoms: Preliminary Findings from a Post-deployment Cohort of Soldiers
Q36214937	Using RNA sequencing for identifying gene imprinting and random monoallelic expression in human placenta
Q34648906	Using RNA-Seq to profile soybean seed development from fertilization to maturity
Q35995974	Using Synthetic Mouse Spike-In Transcripts to Evaluate RNA-Seq Analysis Tools
Q38695914	Using metagenomics to investigate human and environmental resistomes
Q35128096	Using natural selection to explore the adaptive potential of Chlamydomonas reinhardtii.
Q34255194	Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses
Q52343466	Using regulatory genomics data to interpret the function of disease variants and prioritise genes from expression studies.
Q28651638	Using the canary genome to decipher the evolution of hormone-sensitive gene regulation in seasonal singing birds
Q41393291	Using transcriptomics to improve butanol tolerance of Synechocystis sp. strain PCC 6803.
Q55669905	VHL inactivation without hypoxia is sufficient to achieve genome hypermethylation.
Q34084283	VIM proteins regulate transcription exclusively through the MET1 cytosine methylation pathway
Q35766348	VING: a software for visualization of deep sequencing signals
Q64057073	VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer
Q34661381	Validation of noise models for single-cell transcriptomics
Q64988971	Variable protein homeostasis in housekeeping and non-housekeeping pathways under mycotoxins stress.
Q35082188	Variable suites of non-effector genes are co-regulated in the type III secretion virulence regulon across the Pseudomonas syringae phylogeny
Q36320395	Variance component score test for time-course gene set analysis of longitudinal RNA-seq data
Q41385728	Variance component testing for identifying differentially expressed genes in RNA-seq data
Q35048702	Variation of gene expression associated with colonisation of an anthropized environment: comparison between African and European populations of Drosophila simulans
Q30841312	Variation-preserving normalization unveils blind spots in gene expression profiling
Q30445852	Vector transmission regulates immune control of Plasmodium virulence
Q102075475	Venetoclax and pegcrisantaspase for complex karyotype acute myeloid leukemia
Q41655595	VennBLAST—whole transcriptome comparison and visualization tool
Q29107676	Venus flytrap carnivorous lifestyle builds on herbivore defense strategies
Q35254876	Vernalization mediated changes in the Lolium perenne transcriptome
Q36731231	Virus-host mucosal interactions during early SIV rectal transmission.
Q30990975	VisRseq: R-based visual framework for analysis of sequencing data
Q93156942	Visualization methods for differential expression analysis
Q34306646	Volcano plots in analyzing differential expressions with mRNA microarrays.
Q42785682	WASP: allele-specific software for robust molecular quantitative trait locus discovery
Q28606594	WaspAtlas: a Nasonia vitripennis gene database and analysis platform
Q30793257	Waste not, want not: why rarefying microbiome data is inadmissible
Q52657649	Watchdog - a workflow management system for the distributed analysis of large-scale experimental data.
Q93067605	Waterlogging affects plant morphology and the expression of key genes in tef (Eragrostis tef)
Q58718952	Waves of chromatin modifications in mouse dendritic cells in response to LPS stimulation
Q31133475	Web-based bioinformatics workflows for end-to-end RNA-seq data computation and analysis in agricultural animal species
Q42695252	WebMeV: A Cloud Platform for Analyzing and Visualizing Cancer Genomic Data
Q35813492	Weevil endosymbiont dynamics is associated with a clamping of immunity.
Q64229195	Weighted gene co‑expression network analysis for identifying hub genes in association with prognosis in Wilms tumor
Q31050282	What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment
Q33630538	Wheat Ms2 encodes for an orphan protein that confers male sterility in grass species
Q38153062	When cloud computing meets bioinformatics: a review
Q38377688	Which statistical significance test best detects oncomiRNAs in cancer tissues? An exploratory analysis
Q22122069	Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction
Q47314196	White Adipose Tissue Is a Reservoir for Memory T Cells and Promotes Protective Memory Responses to Infection.
Q38437945	Whole Blood Transcriptome Sequencing Reveals Gene Expression Differences between Dapulian and Landrace Piglets
Q64235095	Whole Genome Messenger RNA Profiling Identifies a Novel Signature to Predict Gastric Cancer Survival
Q96155641	Whole Genome and Transcriptome Sequencing of Two Multi-Drug Resistant Mycobacterium tuberculosis Strains to Facilitate Illustrating Their Virulence in vivo
Q92590052	Whole blood transcriptomic analysis of beef cattle at arrival identifies potential predictive molecules and mechanisms that indicate animals that naturally resist bovine respiratory disease
Q64902225	Whole blood transcriptomic profiles can differentiate vulnerability to chronic low back pain.
Q35062974	Whole genome and transcriptome analyses of environmental antibiotic sensitive and multi-resistant Pseudomonas aeruginosa isolates exposed to waste water and tap water.
Q47159723	Whole transcriptome RNA-Seq analysis reveals extensive cell type-specific compartmentalization in Volvox carteri
Q47758663	Whole transcriptome analysis identifies differentially regulated networks between osteosarcoma and normal bone samples.
Q34983666	Whole transcriptome analysis of Acinetobacter baumannii assessed by RNA-sequencing reveals different mRNA expression profiles in biofilm compared to planktonic cells.
Q30528302	Whole transcriptome analysis of a reversible neurodegenerative process in Drosophila reveals potential neuroprotective genes.
Q98613581	Whole transcriptome analysis on blue light-induced eye damage
Q30659020	Whole transcriptome profiling of the vernalization process in Lilium longiflorum (cultivar White Heaven) bulbs
Q34978926	Whole transcriptome sequencing identifies tumor-specific mutations in human oral squamous cell carcinoma
Q38486866	Whole transcriptome sequencing reveals genes involved in plastid/chloroplast division and development are regulated by the HP1/DDB1 at an early stage of tomato fruit development
Q89094354	Whole-Transcriptome Sequence Analysis of Verbena bonariensis in Response to Drought Stress
Q35990319	Whole-exome sequencing and an iPSC-derived cardiomyocyte model provides a powerful platform for gene discovery in left ventricular hypertrophy
Q45744490	Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle
Q89471089	Whole-genome sequencing of wild Siberian musk deer (Moschus moschiferus) provides insights into its genetic features
Q33954128	Whole-transcriptome RNAseq analysis from minute amount of total RNA.
Q36800581	Whole-transcriptome analyses of the Sapsaree, a Korean natural monument, before and after exercise-induced stress
Q36910595	Whole-transcriptome analysis of UUO mouse model of renal fibrosis reveals new molecular players in kidney diseases
Q34455965	Whole-transcriptome analysis of endothelial to hematopoietic stem cell transition reveals a requirement for Gpr56 in HSC generation
Q39035733	Whole-transcriptome response to water stress in a California endemic oak, Quercus lobata
Q37612300	Whole-transcriptome sequence analysis of differentially expressed genes in Phormium tenax under drought stress
Q103804539	Wide-ranging transcriptomic analysis of Poncirus trifoliata, Citrus sunki, Citrus sinensis and contrasting hybrids reveals HLB tolerance mechanisms
Q64084243	Widespread -regulation of RNA editing in a large mammal
Q35128358	Widespread FRA1-dependent control of mesenchymal transdifferentiation programs in colorectal cancer cells
Q51419679	Widespread and precise reprogramming of yeast protein-genome interactions in response to heat shock.
Q39011680	Widespread context dependency of microRNA-mediated regulation
Q34317160	Widespread dynamic DNA methylation in response to biotic stress
Q35664130	Widespread exon skipping triggers degradation by nuclear RNA surveillance in fission yeast
Q52715419	Widespread intronic polyadenylation diversifies immune cell transcriptomes.
Q24608987	Widespread plasticity in CTCF occupancy linked to DNA methylation
Q34211598	Widespread site-dependent buffering of human regulatory polymorphism
Q96640021	Widespread transcript shortening through alternative polyadenylation in secretory cell differentiation
Q37159011	Wiz binds active promoters and CTCF-binding sites and is required for normal behaviour in the mouse.
Q36292664	Wnt addiction of genetically defined cancers reversed by PORCN inhibition
Q51738159	Wnt ligands influence tumour initiation by controlling the number of intestinal stem cells.
Q34985785	Wnt/β-catenin signaling integrates patterning and metabolism of the insect growth zone.
Q35992588	Wolbachia Blocks Viral Genome Replication Early in Infection without a Transcriptional Response by the Endosymbiont or Host Small RNA Pathways
Q31159366	Wolbachia infection modifies the profile, shuttling and structure of microRNAs in a mosquito cell line
Q42276805	XBSeq2: a fast and accurate quantification of differential expression and differential polyadenylation.
Q89467094	XPRESSyourself: Enhancing, standardizing, and automating ribosome profiling computational analyses yields improved insight into data
Q33669240	XSAnno: a framework for building ortholog models in cross-species transcriptome comparisons
Q40469154	Xanthomonas campestris attenuates virulence by sensing light through a bacteriophytochrome photoreceptor.
Q27938875	Xbp1 directs global repression of budding yeast transcription during the transition to quiescence and is important for the longevity and reversibility of the quiescent state
Q38437859	YAP Mediates Tumorigenesis in Neurofibromatosis Type 2 by Promoting Cell Survival and Proliferation through a COX-2-EGFR Signaling Axis
Q35752339	YAP1 Exerts Its Transcriptional Control via TEAD-Mediated Activation of Enhancers
Q60939066	YC7010 Enhances Plant Defenses Against Brown Planthopper Through Transcriptomic and Metabolic Changes in Rice
Q35254030	YM500v2: a small RNA sequencing (smRNA-seq) database for human cancer miRNome research
Q37556820	YM500v3: a database for small RNA sequencing in human cancer research.
Q29465801	YTHDF3 facilitates translation and decay of N6-methyladenosine-modified RNA.
Q46298053	Yeast Creates a Niche for Symbiotic Lactic Acid Bacteria through Nitrogen Overflow
Q50350932	Yeast RNA-Binding Protein Nab3 Regulates Genes Involved in Nitrogen Metabolism.
Q64082866	Yeast expression of mammalian Onzin and fungal FCR1 suggests ancestral functions of PLAC8 proteins in mitochondrial metabolism and DNA repair
Q37307458	ZEB1-mediated melanoma cell plasticity enhances resistance to MAPK inhibitors
Q56886543	ZFX Mediates Non-canonical Oncogenic Functions of the Androgen Receptor Splice Variant 7 in Castrate-Resistant Prostate Cancer
Q92685972	ZIC3 Controls the Transition from Naive to Primed Pluripotency
Q35533016	ZNF804A Transcriptional Networks in Differentiating Neurons Derived from Induced Pluripotent Stem Cells of Human Origin
Q52723067	Zeb1-Hdac2-eNOS circuitry identifies early cardiovascular precursors in naive mouse embryonic stem cells.
Q36199580	Zelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation.
Q31032478	Zero-Inflated Beta Regression for Differential Abundance Analysis with Metagenomics Data
Q39860074	Zero-inflated negative binomial mixed model: an application to two microbial organisms important in oesophagitis
Q38157749	Zika virus alters the microRNA expression profile and elicits an RNAi response in Aedes aegypti mosquitoes
Q36760368	Zinc deficiency impacts CO2 assimilation and disrupts copper homeostasis in Chlamydomonas reinhardtii
Q35172969	Zinc finger protein 407 (ZFP407) regulates insulin-stimulated glucose uptake and glucose transporter 4 (Glut4) mRNA
Q28538769	Zinc finger transcription factors displaced SREBP proteins as the major Sterol regulators during Saccharomycotina evolution
Q37747054	Zinc-Dependent Transcriptional Regulation in Paracoccus denitrificans
Q28493182	ZnuA and zinc homeostasis in Pseudomonas aeruginosa
Q33885542	Zooplankton as a potential vector for white band disease transmission in the endangered coral, Acropora cervicornis
Q91936297	aFold - using polynomial uncertainty modelling for differential gene expression estimation from RNA sequencing data
Q40549367	aroA-Deficient Salmonella enterica Serovar Typhimurium Is More Than a Metabolically Attenuated Mutant.
Q90039570	ascend: R package for analysis of single-cell RNA-seq data
Q37682130	bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice.
Q64951025	bHLH92 from sheepgrass acts as a negative regulator of anthocyanin/proanthocyandin accumulation and influences seed dormancy.
Q35202669	bacterial infection drives the expression dynamics of microRNAs and their isomiRs
Q33653650	baySeq: empirical Bayesian methods for identifying differential expression in sequence count data
Q30817928	compcodeR--an R package for benchmarking differential expression methods for RNA-seq data.
Q31021180	contamDE: differential expression analysis of RNA-seq data for contaminated tumor samples
Q47336496	dRNA-seq implicates sulfide as master regulator of S(0) metabolism in Chlorobaculum tepidum and other green sulfur bacteria
Q27309551	dbl-1/TGF-β and daf-12/NHR Signaling Mediate Cell-Nonautonomous Effects of daf-16/FOXO on Starvation-Induced Developmental Arrest
Q35662682	deGPS is a powerful tool for detecting differential expression in RNA-sequencing studies
Q35847774	deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data
Q30647275	diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates
Q47252148	eIF1A residues implicated in cancer stabilize translation preinitiation complexes and favor suboptimal initiation sites in yeast.
Q37281478	eIF4B stimulates translation of long mRNAs with structured 5' UTRs and low closed-loop potential but weak dependence on eIF4G.
Q30625155	eQTL Mapping Using RNA-seq Data
Q30769819	eRNA: a graphic user interface-based tool optimized for large data analysis from high-throughput RNA sequencing.
Q34357558	easyRNASeq: a bioconductor package for processing RNA-Seq data
Q36959034	f-divergence cutoff index to simultaneously identify differential expression in the integrated transcriptome and proteome
Q93343329	foxF-1 Controls Specification of Non-body Wall Muscle and Phagocytic Cells in Planarians
Q62490055	gene signature identification from single-cell RNA-seq with hierarchical Poisson factorization
Q59145752	geneXplainR: An R interface for the geneXplain platform
Q36681955	hTERT promotes cell adhesion and migration independent of telomerase activity
Q46287916	hace1 Influences zebrafish cardiac development via ROS-dependent mechanisms
Q35224643	hiCLIP reveals the in vivo atlas of mRNA secondary structures recognized by Staufen 1.
Q35142086	histoneHMM: Differential analysis of histone modifications with broad genomic footprints
Q30713159	iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq
Q35212382	iRegulon: from a gene list to a gene regulatory network using large motif and track collections
Q36335211	isomiR2Function: An Integrated Workflow for Identifying MicroRNA Variants in Plants
Q30486236	isomiRex: web-based identification of microRNAs, isomiR variations and differential expression using next-generation sequencing datasets
Q42320746	kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects
Q57793799	liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies
Q52721285	lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer.
Q38829474	lncRNA expression in the auditory forebrain during postnatal development
Q60300980	lncRNA profile study reveals the mRNAs and lncRNAs associated with docetaxel resistance in breast cancer cells
Q89665161	m6A-dependent biogenesis of circular RNAs in male germ cells
Q48307892	mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Wheat.
Q93078320	mRNA and miRNA Expression Analysis Reveal the Regulation for Flower Spot Patterning in Phalaenopsis 'Panda'
Q36721573	mRNA expression, splicing and editing in the embryonic and adult mouse cerebral cortex
Q47150815	mRNA processing in mutant zebrafish lines generated by chemical and CRISPR-mediated mutagenesis produces unexpected transcripts that escape nonsense-mediated decay
Q28543647	mRNA profiling reveals determinants of trastuzumab efficiency in HER2-positive breast cancer
Q34044477	metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNA.
Q35147342	miR-10b-5p expression in Huntington's disease brain relates to age of onset and the extent of striatal involvement
Q88866879	miR-133-mediated regulation of the Hedgehog pathway orchestrates embryo myogenesis
Q40373925	miR-16 and miR-125b are involved in barrier function dysregulation through the modulation of claudin-2 and cingulin expression in the jejunum in IBS with diarrhoea
Q40720717	miR-199a-3p displays tumor suppressor functions in papillary thyroid carcinoma.
Q38782117	miR-205 is a critical regulator of lacrimal gland development
Q35794952	miR-22 and miR-29a Are Members of the Androgen Receptor Cistrome Modulating LAMC1 and Mcl-1 in Prostate Cancer.
Q35841308	miR-34a screened by miRNA profiling negatively regulates Wnt/β-catenin signaling pathway in Aflatoxin B1 induced hepatotoxicity
Q37061198	miR-93 regulates Msk2-mediated chromatin remodelling in diabetic nephropathy
Q41659413	miR-CLIP capture of a miRNA targetome uncovers a lincRNA H19-miR-106a interaction
Q36724737	miR-isomiRExp: a web-server for the analysis of expression of miRNA at the miRNA/isomiR levels
Q89819242	miRNA Expression Profiles and Potential as Biomarkers in Nontuberculous Mycobacterial Pulmonary Disease
Q54971385	miRNA Long-Term Response to Early Metabolic Environmental Challenge in Hypothalamic Arcuate Nucleus.
Q42692344	miRNA Temporal Analyzer (mirnaTA): a bioinformatics tool for identifying differentially expressed microRNAs in temporal studies using normal quantile transformation
Q37550217	miRNA and mRNA expression analysis reveals potential sex-biased miRNA expression
Q40403733	miRNA profiling of human naive CD4 T cells links miR-34c-5p to cell activation and HIV replication.
Q53408241	miRNAome expression profiles in the gonads of adult Melopsittacus undulatus.
Q33905955	miRNAs in the alga Chlamydomonas reinhardtii are not phylogenetically conserved and play a limited role in responses to nutrient deprivation.
Q39434982	miRNome Analysis of CML Cells
Q33880585	miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments
Q58762009	microCLIP super learning framework uncovers functional transcriptome-wide miRNA interactions
Q36647044	microRNA Expression in Prospectively Collected Blood as a Potential Biomarker of Breast Cancer Risk in the BCFR.
Q36382382	microRNA Function Is Limited to Cytokine Control in the Acute Response to Virus Infection
Q37309033	microRNA changes in liver tissue associated with fibrosis progression in patients with hepatitis C.
Q35078256	microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
Q30547778	midlife crisis encodes a conserved zinc-finger protein required to maintain neuronal differentiation in Drosophila
Q39544959	minotaur: A platform for the analysis and visualization of multivariate results from genome scans with R Shiny.
Q40469624	mirPRo-a novel standalone program for differential expression and variation analysis of miRNAs.
Q31110101	multiDE: a dimension reduced model based statistical method for differential expression analysis using RNA-sequencing data with multiple treatment conditions
Q52691433	mus-52 disruption and metabolic regulation in Neurospora crassa: Transcriptional responses to extracellular phosphate availability.
Q92453643	p120-catenin-dependent collective brain infiltration by glioma cell networks
Q60907996	p53 Loss in Breast Cancer Leads to Myc Activation, Increased Cell Plasticity, and Expression of a Mitotic Signature with Prognostic Value
Q36860619	p53 Pulses Diversify Target Gene Expression Dynamics in an mRNA Half-Life-Dependent Manner and Delineate Co-regulated Target Gene Subnetworks.
Q38759968	p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity
Q41841346	p53 is active in murine stem cells and alters the transcriptome in a manner that is reminiscent of mutant p53.
Q38875344	p53-dependent non-coding RNA networks in chronic lymphocytic leukemia.
Q92522548	p63 cooperates with CTCF to modulate chromatin architecture in skin keratinocytes
Q33850547	piRNA pathway targets active LINE1 elements to establish the repressive H3K9me3 mark in germ cells.
Q42696289	pulseR: Versatile computational analysis of RNA turnover from metabolic labeling experiments.
Q30625699	r3Cseq: an R/Bioconductor package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data
Q30698709	rSeqDiff: detecting differential isoform expression from RNA-Seq data using hierarchical likelihood ratio test
Q33911740	rnaSeqMap: a Bioconductor package for RNA sequencing data exploration
Q33870596	sRNA and cis-antisense sRNA identification in Staphylococcus aureus highlights an unusual sRNA gene cluster with one encoding a secreted peptide
Q92203206	sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression
Q40895346	sRNAtoolbox: an integrated collection of small RNA research tools
Q38821613	sRNAtoolboxVM: Small RNA Analysis in a Virtual Machine.
Q30783186	spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data
Q41292373	stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage
Q30858102	svaseq: removing batch effects and other unwanted noise from sequencing data
Q41873291	tRanslatome: an R/Bioconductor package to portray translational control
Q55176453	uvCLAP is a fast and non-radioactive method to identify in vivo targets of RNA-binding proteins.
Q30596352	virtualArray: a R/bioconductor package to merge raw data from different microarray platforms
Q47217283	visnormsc: A Graphical User Interface to Normalize Single-cell RNA Sequencing Data
Q33741687	voom: Precision weights unlock linear model analysis tools for RNA-seq read counts
Q50166610	Δ9-Tetrahydrocannabinol changes the brain lipidome and transcriptome differentially in the adolescent and the adult.
Q47592635	γδ T Cells Are Required for the Induction of Sterile Immunity during Irradiated Sporozoite Vaccinations.
Q35914056	σ54-Dependent Response to Nitrogen Limitation and Virulence in Burkholderia cenocepacia Strain H111

P6179	Dimensions Publication ID	1031289083
P356	DOI	10.1186/GB-2010-11-10-R106
P3181	OpenCitations bibliographic resource ID	8734
P932	PMC publication ID	3218662
P698	PubMed publication ID	20979621
P5875	ResearchGate publication ID	47565617

P50	author	Simon Anders	Q37391130
		Wolfgang Huber	Q37391155
P2860	cites work	Generalized Linear Models	Q105583240
		Ultrafast and memory-efficient alignment of short DNA sequences to the human genome	Q21183894
		Bioconductor: open software development for computational biology and bioinformatics	Q21194861
		Mapping and quantifying mammalian transcriptomes by RNA-Seq	Q22122035
		A scaling normalization method for differential expression analysis of RNA-seq data	Q24628783
		The transcriptional landscape of the yeast genome defined by RNA sequencing	Q24633693
		HITS-CLIP yields genome-wide insights into brain alternative RNA processing	Q24648963
		RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays	Q24655562
		Linear models and empirical bayes methods for assessing differential expression in microarray experiments	Q27860758
		edgeR: a Bioconductor package for differential expression analysis of digital gene expression data	Q27860819
		Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments	Q29614452
		Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing	Q29618021
		Quantitative phenotyping via deep barcode sequencing.	Q30482301
		Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays	Q30489493
		Small-sample estimation of negative binomial dispersion, with applications to SAGE data	Q33295482
		Moderated statistical tests for assessing differences in tag abundance	Q33299648
		Next-generation tag sequencing for cancer gene expression profiling	Q33471106
		DEGseq: an R package for identifying differentially expressed genes from RNA-seq data	Q33512293
		Variation in transcription factor binding among humans	Q34105133
		Bias-corrected maximum likelihood estimator of the negative binomial dispersion parameter.	Q50092842
P275	copyright license	Creative Commons Attribution 2.0 Generic	Q19125117
P6216	copyright status	copyrighted	Q50423863
P4510	describes a project that uses	limma	Q112236343
		DESeq2	Q113018293
		edgeR	Q113334690
P433	issue	10
P407	language of work or name	English	Q1860
P921	main subject	RNA sequencing	Q2542347
P304	page(s)	R106
P577	publication date	2010-01-01
P1433	published in	Genome Biology	Q5533480
P1476	title	Differential expression analysis for sequence count data
P478	volume	11

Differential expression analysis for sequence count data

scientific article

Reverse relations