| scholarly article | Q13442814 |
| P50 | author | Aili Li | Q91505660 |
| Jun Wu | Q96041575 | ||
| Long Mao | Q85593263 | ||
| Dengcai Liu | Q42777499 | ||
| P2093 | author name string | Rongzhi Zhang | |
| Ming Hao | |||
| Jun Yan | |||
| Liang Wu | |||
| Lingjie Yin | |||
| Junyan Wu | |||
| Youliang Zheng | |||
| Xiaoxue Jiang | |||
| Shuaifeng Geng | |||
| Xubo Zhao | |||
| Lianquan Zhang | |||
| P2860 | cites work | Differential expression analysis for sequence count data | Q21184103 |
| TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions | Q21999527 | ||
| The frequency of polyploid speciation in vascular plants | Q22066293 | ||
| The advantages and disadvantages of being polyploid | Q22122019 | ||
| Mapping and quantifying mammalian transcriptomes by RNA-Seq | Q22122035 | ||
| Draft genome of the wheat A-genome progenitor Triticum urartu | Q22122138 | ||
| Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation | Q22122140 | ||
| Analysis of the bread wheat genome using whole-genome shotgun sequencing | Q22122152 | ||
| Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
| miRBase: integrating microRNA annotation and deep-sequencing data | Q24615914 | ||
| Molecular mechanisms of polyploidy and hybrid vigor | Q24647639 | ||
| Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids | Q24647713 | ||
| TopHat: discovering splice junctions with RNA-Seq | Q24655505 | ||
| De novo assembly of human genomes with massively parallel short read sequencing | Q24655711 | ||
| Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids | Q24679271 | ||
| Polyploids as a "model system" for the study of heterosis | Q26809961 | ||
| Genomic and epigenetic insights into the molecular bases of heterosis | Q26809972 | ||
| Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility | Q26809984 | ||
| The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data | Q27860742 | ||
| The Sequence Alignment/Map format and SAMtools | Q27860966 | ||
| Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds | Q28262288 | ||
| Polyploidy and its effect on evolutionary success: old questions revisited with new tools | Q28709534 | ||
| A highly conserved, small LTR retrotransposon that preferentially targets genes in grass genomes | Q28732031 | ||
| Duplicate genes increase expression diversity in closely related species and allopolyploids | Q28755278 | ||
| Genome-wide profiling and analysis of Arabidopsis siRNAs | Q28763211 | ||
| Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids | Q28768687 | ||
| Polyploidy and angiosperm diversification | Q29617868 | ||
| Genomic plasticity and the diversity of polyploid plants | Q33330809 | ||
| The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors | Q33366928 | ||
| Genomic expression dominance in allopolyploids | Q33437873 | ||
| Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response | Q33505863 | ||
| Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data | Q33508980 | ||
| DEGseq: an R package for identifying differentially expressed genes from RNA-seq data | Q33512293 | ||
| Homoeolog-specific transcriptional bias in allopolyploid wheat | Q33694957 | ||
| Extensive and heritable epigenetic remodeling and genetic stability accompany allohexaploidization of wheat | Q33880570 | ||
| Genomic and expression plasticity of polyploidy | Q33893483 | ||
| Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis | Q33909578 | ||
| Recently formed polyploid plants diversify at lower rates | Q33996502 | ||
| Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv | Q45327445 | ||
| Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools | Q46748372 | ||
| Two evolutionarily distinct classes of paleopolyploidy | Q46964614 | ||
| Biolistics transformation of wheat | Q47235083 | ||
| Phenotypic instability and rapid gene silencing in newly formed arabidopsis allotetraploids. | Q47826237 | ||
| The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering | Q47872541 | ||
| Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation. | Q51642803 | ||
| cis- and trans-Regulation of miR163 and target genes confers natural variation of secondary metabolites in two Arabidopsis species and their allopolyploids. | Q51866507 | ||
| Profiling of cold-stress-responsive miRNAs in rice by microarrays. | Q51911870 | ||
| Regulation of FLOWERING LOCUS T by a microRNA in Brachypodium distachyon. | Q53081132 | ||
| Homoeolog expression bias and expression level dominance in allopolyploids. | Q53107085 | ||
| Newly synthesized wheat allohexaploids display progenitor-dependent meiotic stability and aneuploidy but structural genomic additivity. | Q54441791 | ||
| Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes. | Q54688146 | ||
| Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat | Q59203365 | ||
| Allopolyploidy alters gene expression in the highly stable hexaploid wheat | Q73659220 | ||
| Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat | Q78665395 | ||
| Homoeologous gene silencing in hexaploid wheat | Q80086966 | ||
| Using RepeatMasker to identify repetitive elements in genomic sequences | Q81131167 | ||
| The origin of Triticum spelta and its free-threshing hexaploid relatives | Q82111560 | ||
| Gene expression analysis at the intersection of ploidy and hybridity in maize | Q84355357 | ||
| Genome-wide gene expression changes in genetically stable synthetic and natural wheat allohexaploids | Q84508331 | ||
| Chromosomal and genome-wide molecular changes associated with initial stages of allohexaploidization in wheat can be transit and incidental | Q84612068 | ||
| Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of the Triticum/Aegilops complex and the evolutionary history of polyploid wheat | Q34031511 | ||
| Global transgenerational gene expression dynamics in two newly synthesized allohexaploid wheat (Triticum aestivum) lines | Q34141019 | ||
| Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa | Q34261809 | ||
| RSeQC: quality control of RNA-seq experiments | Q34284787 | ||
| Comparison of class 2 transposable elements at superfamily resolution reveals conserved and distinct features in cereal grass genomes | Q34569780 | ||
| Genomewide nonadditive gene regulation in Arabidopsis allotetraploids | Q34587400 | ||
| Plant transposable elements: where genetics meets genomics | Q34623760 | ||
| Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss | Q34651956 | ||
| MicroRNA expression profiling using microarrays | Q34767925 | ||
| Wheat hybridization and polyploidization results in deregulation of small RNAs | Q35065506 | ||
| Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants | Q35218107 | ||
| Trans chromosomal methylation in Arabidopsis hybrids | Q35807440 | ||
| PsRobot: a web-based plant small RNA meta-analysis toolbox | Q36088572 | ||
| Use of wild relatives to improve salt tolerance in wheat | Q36412187 | ||
| A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice | Q36418162 | ||
| Post-transcriptional small RNA pathways in plants: mechanisms and regulations | Q36442928 | ||
| Homoeolog expression bias and expression level dominance in allopolyploid cotton | Q36560877 | ||
| Genomic dosage effects on heterosis in triploid maize | Q36617010 | ||
| Persistent whole-chromosome aneuploidy is generally associated with nascent allohexaploid wheat | Q36653937 | ||
| Genome plasticity a key factor in the success of polyploid wheat under domestication | Q36864536 | ||
| Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids | Q36998780 | ||
| Nonadditive expression of homoeologous genes is established upon polyploidization in hexaploid wheat | Q37117023 | ||
| Intrinsic karyotype stability and gene copy number variations may have laid the foundation for tetraploid wheat formation | Q37353102 | ||
| Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids | Q37376096 | ||
| Synthetic hexaploid wheat and its utilization for wheat genetic improvement in China | Q37603889 | ||
| Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice | Q37640932 | ||
| Evolution of polyploid triticum wheats under cultivation: the role of domestication, natural hybridization and allopolyploid speciation in their diversification | Q37840878 | ||
| Genomic asymmetry in allopolyploid plants: wheat as a model. | Q38031812 | ||
| Salt and drought stresses induce the aberrant expression of microRNA genes in tobacco | Q39011154 | ||
| Polyploids exhibit higher potassium uptake and salinity tolerance in Arabidopsis | Q39527908 | ||
| The auxin-responsive GH3 gene family in rice (Oryza sativa). | Q42654665 | ||
| 'Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'. | Q42930356 | ||
| Prevalence of gene expression additivity in genetically stable wheat allohexaploids | Q44577467 | ||
| P433 | issue | 5 | |
| P921 | main subject | wheat | Q15645384 |
| transcriptome | Q252857 | ||
| heterosis | Q339051 | ||
| P304 | page(s) | 1878-1900 | |
| P577 | publication date | 2014-05-16 | |
| P1433 | published in | The Plant Cell | Q3988745 |
| P1476 | title | mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Wheat | |
| P478 | volume | 26 |
| Q58603591 | A Genome-wide View of Transcriptome Dynamics During Early Spike Development in Bread Wheat |
| Q39143905 | A large-scale chromosome-specific SNP discovery guideline |
| Q90049215 | A transcriptomic view of the ability of nascent hexaploid wheat to tolerate aneuploidy |
| Q46675249 | Altered expression of TaRSL4 gene by genome interplay shapes root hair length in allopolyploid wheat |
| Q47946244 | Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution |
| Q64063323 | An extracted tetraploid wheat harbouring the BBAA component of common wheat shows anomalous shikimate and sucrose metabolism |
| Q35611908 | An integrative approach to identify hexaploid wheat miRNAome associated with development and tolerance to abiotic stress |
| Q93052286 | Analysis of miRNAs in Two Wheat Cultivars Infected With Puccinia striiformis f. sp. tritici |
| Q90358255 | Analysis of small RNA changes in different Brassica napus synthetic allopolyploids |
| Q42652529 | Analyzing homoeolog expression provides insights into the rediploidization event in gynogenetic hybrids of Carassius auratus red var. × Cyprinus carpio |
| Q58122227 | Assessing How the Aluminum-Resistance Traits in Wheat and Rye Transfer to Hexaploid and Octoploid Triticale |
| Q45230202 | Asymmetric epigenetic modification and elimination of rDNA sequences by polyploidization in wheat. |
| Q55310624 | Changes in DNA methylation assessed by genomic bisulfite sequencing suggest a role for DNA methylation in cotton fruiting branch development. |
| Q35776101 | Combined Small RNA and Degradome Sequencing Reveals Novel MiRNAs and Their Targets in the High-Yield Mutant Wheat Strain Yunong 3114. |
| Q92290214 | Combined effects of dosage compensation and incomplete dominance on gene expression in triploid cyprinids |
| Q28959159 | Comparative transcriptome analysis among parental inbred and crosses reveals the role of dominance gene expression in heterosis in Drosophila melanogaster |
| Q38431222 | Comparative transcriptome analysis of flower heterosis in two soybean F1 hybrids by RNA-seq. |
| Q90218933 | Competition of Parental Genomes in Plant Hybrids |
| Q28820931 | Correlation analysis of the mRNA and miRNA expression profiles in the nascent synthetic allotetraploid Raphanobrassica |
| Q38730733 | Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes. |
| Q59351898 | DNA methylation dynamics during the interaction of wheat progenitor Aegilops tauschii with the obligate biotrophic fungus Blumeria graminis f. sp. tritici |
| Q35998049 | De Novo Centromere Formation and Centromeric Sequence Expansion in Wheat and its Wide Hybrids |
| Q33359813 | Differential transcriptome analysis between Populus and its synthesized allotriploids driven by second-division restitution |
| Q35604608 | Dissection of the style's response to pollination using transcriptome profiling in self-compatible (Solanum pimpinellifolium) and self-incompatible (Solanum chilense) tomato species |
| Q45995902 | Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa. |
| Q38475267 | Evolution of the BBAA component of bread wheat during its history at the allohexaploid level |
| Q89722671 | Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff |
| Q42741228 | Extraction of the Constituent Subgenomes of the Natural Allopolyploid Rapeseed (Brassica napus L.). |
| Q92539637 | Gene Expression Changes During the Allo-/Deallopolyploidization Process of Brassica napus |
| Q88562627 | Gene retention, fractionation and subgenome differences in polyploid plants |
| Q36789103 | Genetic and Epigenetic Changes in Oilseed Rape (Brassica napus L.) Extracted from Intergeneric Allopolyploid and Additions with Orychophragmus |
| Q53569899 | Genetic and epigenetic modifications to the BBAA component of common wheat during its evolutionary history at the hexaploid level. |
| Q48307883 | Genome Dominance and Interaction at the Gene Expression Level in Allohexaploid Wheat |
| Q38456698 | Genome distribution of differential homoeologue contributions to leaf gene expression in bread wheat |
| Q38943628 | Genome wide identification of C1-2i zinc finger proteins and their response to abiotic stress in hexaploid wheat |
| Q37334981 | Genome-Wide Gene Expressions Respond Differently to A-subgenome Origins in Brassica napus Synthetic Hybrids and Natural Allotetraploid |
| Q60047044 | Genome-Wide Transcription During Early Wheat Meiosis Is Independent of Synapsis, Ploidy Level, and the Locus |
| Q36245544 | Genome-specific differential gene expressions in resynthesized Brassica allotetraploids from pair-wise crosses of three cultivated diploids revealed by RNA-seq |
| Q93188946 | Genome-wide identification and characterization of the Hsp70 gene family in allopolyploid rapeseed (Brassica napus L.) compared with its diploid progenitors |
| Q36298391 | Genome-wide identification and evolutionary analyses of bZIP transcription factors in wheat and its relatives and expression profiles of anther development related TabZIP genes |
| Q47153493 | Genome-wide proteomic profiling reveals the role of dominance protein expression in heterosis in immature maize ears |
| Q98735761 | Genomics of Evolutionary Novelty in Hybrids and Polyploids |
| Q33626638 | Global gene expression profiling related to temperature-sensitive growth abnormalities in interspecific crosses between tetraploid wheat and Aegilops tauschii |
| Q64269443 | Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry |
| Q92615260 | Heterotic patterns of primary and secondary metabolites in the oilseed crop Brassica juncea |
| Q36128236 | High Transferability of Homoeolog-Specific Markers between Bread Wheat and Newly Synthesized Hexaploid Wheat Lines |
| Q94460487 | Homoeolog expression bias and expression level dominance (ELD) in four tissues of natural allotetraploid Brassica napus |
| Q58799406 | Homoeolog expression bias and expression level dominance in resynthesized allopolyploid Brassica napus |
| Q52308982 | Homoeolog-specific activation of genes for heat acclimation in the allopolyploid grass Brachypodium hybridum. |
| Q26750493 | Homoeologs: What Are They and How Do We Infer Them? |
| Q58771889 | Impact of transposable elements on genome structure and evolution in bread wheat |
| Q47195739 | Impact of transposable elements on polyploid plant genomes. |
| Q38793458 | Insights into the Ecology and Evolution of Polyploid Plants through Network Analysis |
| Q41577587 | Integrated analysis of mRNA and miRNA expression profiling in rice backcrossed progenies (BC2F12) with different plant height. |
| Q95841097 | Integrative Omics Analysis Reveals a Limited Transcriptional Shock After Yeast Interspecies Hybridization |
| Q37242066 | Inter-genomic DNA Exchanges and Homeologous Gene Silencing Shaped the Nascent Allopolyploid Coffee Genome (Coffea arabica L.). |
| Q93081328 | Lineage-Specific Evolved MicroRNAs Regulating NB-LRR Defense Genes in Triticeae |
| Q59136244 | LncRNAs in polyploid cotton interspecific hybrids are derived from transposon neofunctionalization |
| Q38870259 | Long noncoding miRNA gene represses wheat β-diketone waxes |
| Q26809947 | Making the Bread: Insights from Newly Synthesized Allohexaploid Wheat |
| Q52562442 | Mechanisms, origin and heredity of Glu-1Ay silencing in wheat evolution and domestication. |
| Q47701156 | MicroRNA expression changes following synthesis of three full-sib Populus triploid populations with different heterozygosities |
| Q92726033 | MicroRNA-guided regulation of heat stress response in wheat |
| Q39406963 | MicroRNAs in crop improvement: fine-tuners for complex traits |
| Q91874266 | Molecular Mechanism of Vegetative Growth Advantage in Allotriploid Populus |
| Q64117441 | Molecular basis underlying the successful invasion of hexaploid cytotypes of Solidago canadensis L.: Insights from integrated gene and miRNA expression profiling |
| Q36914641 | Multi-omics maps of cotton fibre reveal epigenetic basis for staged single-cell differentiation |
| Q64232938 | Parental legacy, demography, and admixture influenced the evolution of the two subgenomes of the tetraploid Capsella bursa-pastoris (Brassicaceae) |
| Q55262161 | Phylogenetic analyses and in-seedling expression of ammonium and nitrate transporters in wheat. |
| Q54985066 | Recent research on the mechanism of heterosis is important for crop and vegetable breeding systems. |
| Q36292002 | Response of microRNAs to cold treatment in the young spikes of common wheat |
| Q38460703 | Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress |
| Q45065465 | Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower |
| Q90640069 | The Resurgence of Introgression Breeding, as Exemplified in Wheat Improvement |
| Q36277313 | The abundance of homoeologue transcripts is disrupted by hybridization and is partially restored by genome doubling in synthetic hexaploid wheat |
| Q60912405 | The genome-wide transcriptional consequences of the nullisomic-tetrasomic stocks for homoeologous group 7 in bread wheat |
| Q26738916 | The importance of reproductive barriers and the effect of allopolyploidization on crop breeding |
| Q96132129 | Transcriptome Analysis by RNA-Seq Reveals Genes Related to Plant Height in Two Sets of Parent-hybrid Combinations in Easter lily (Lilium longiflorum) |
| Q36089261 | Transcriptome Analysis of Interspecific Hybrid between Brassica napus and B. rapa Reveals Heterosis for Oil Rape Improvement |
| Q47795361 | Transcriptome Association Identifies Regulators of Wheat Spike Architecture |
| Q28959136 | Transcriptome analysis of neo-tetraploid rice reveals specific differential gene expressions associated with fertility and heterosis |
| Q87958050 | Transcriptome analysis of wheat seedling and spike tissues in the hybrid Jingmai 8 uncovered genes involved in heterosis |
| Q90164235 | Transcriptome and Metabolite Profiling Reveal Novel Insights into Volatile Heterosis in the Tea Plant (Camellia Sinensis) |
| Q33687814 | Transcriptome and metabolite analysis identifies nitrogen utilization genes in tea plant (Camellia sinensis). |
| Q46659855 | Transcriptome asymmetry in synthetic and natural allotetraploid wheats, revealed by RNA-sequencing |
| Q28959138 | Transcriptome profiling and comparison of maize ear heterosis during the spikelet and floret differentiation stages |
| Q28833742 | Transcriptome shock invokes disruption of parental expression-conserved genes in tetraploid wheat |
| Q47216582 | Transcriptomic analyses reveal molecular mechanisms underlying growth heterosis and weakness of rubber tree seedlings |
| Q40485412 | Transcriptomic changes following synthesis of a Populus full-sib diploid and allotriploid population with different heterozygosities driven by three types of 2n female gamete. |
| Q39874103 | Wheat miRNA ancestors: evident by transcriptome analysis of A, B, and D genome donors |
| Q30488940 | expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform. |
| Q46293471 | miRNA alteration is an important mechanism in sugarcane response to low-temperature environment |
| Q28598314 | miRNAs Are Involved in Determining the Improved Vigor of Autotetrapoid Chrysanthemum nankingense |
| Q53383866 | microRNAs contribute to enhanced salt adaptation of the autopolyploid Hordeum bulbosum compared with its diploid ancestor. |
Search more.