expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform.

scientific article

expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1104/PP.15.01667
P932PMC publication ID4825114
P698PubMed publication ID26869702
P5875ResearchGate publication ID294104779

P50authorPhilippa BorrillQ21264529
Ricardo Ramirez-GonzalezQ38155165
Cristobal UauyQ46744336
P2093author name stringRicardo Ramirez-Gonzalez
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Evaluation of assembly strategies using RNA-seq data associated with grain development of wheat (Triticum aestivum L.).Q30717960
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Genomics as the key to unlocking the polyploid potential of wheatQ30976585
MaizeGDB's new data types, resources and activitiesQ31089651
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Structure and function of RubiscoQ33320908
Positional cloning of the wheat vernalization gene VRN1Q33338351
Separating homeologs by phasing in the tetraploid wheat transcriptomeQ33742638
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolboxQ33981484
Reference genes for gene expression studies in wheat flag leaves grown under different farming conditionsQ34032790
Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescenceQ34043872
Global transgenerational gene expression dynamics in two newly synthesized allohexaploid wheat (Triticum aestivum) linesQ34141019
Large-scale transcriptome comparison reveals distinct gene activations in wheat responding to stripe rust and powdery mildew.Q34363060
GreenPhylDB v2.0: comparative and functional genomics in plants.Q34456566
Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheatQ34573868
Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors.Q34680844
Transcription factors in plant defense and stress responsesQ34787026
Yield Trends Are Insufficient to Double Global Crop Production by 2050.Q34805419
WheatQ34977252
Triticeae resources in Ensembl PlantsQ34994742
Genes and co-expression modules common to drought and bacterial stress responses in Arabidopsis and riceQ35018812
Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivum L.).Q35024644
Transcriptional reprogramming of wheat and the hemibiotrophic pathogen Septoria tritici during two phases of the compatible interaction.Q35058612
Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat.Q35146248
A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomesQ35319987
The TIGR Rice Genome Annotation Resource: improvements and new featuresQ35545826
PLEXdb: gene expression resources for plants and plant pathogensQ35630959
Transcriptomic analysis of wheat near-isogenic lines identifies PM19-A1 and A2 as candidates for a major dormancy QTL.Q35645592
RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web applicationQ35653764
Temporal transcriptome profiling reveals expression partitioning of homeologous genes contributing to heat and drought acclimation in wheat (Triticum aestivum L.).Q35669199
Heterologous expression and transcript analysis of gibberellin biosynthetic genes of grasses reveals novel functionality in the GA3ox familyQ35682554
Evolutionary and comparative analysis of MYB and bHLH plant transcription factorsQ37858622
NAC transcription factors in plant abiotic stress responsesQ37950809
Membrane trafficking and autophagy in pathogen-triggered cell death and immunityQ38178163
agriGO: a GO analysis toolkit for the agricultural communityQ38373934
Machine learning approaches distinguish multiple stress conditions using stress-responsive genes and identify candidate genes for broad resistance in riceQ38483390
Streaming fragment assignment for real-time analysis of sequencing experimentsQ41849422
Endosomal trafficking pathway regulated by ARA6, a RAB5 GTPase unique to plantsQ41863508
Protocol: A simple phenol-based method for 96-well extraction of high quality RNA from ArabidopsisQ42709448
Functional characterization of the Arabidopsis bHLH92 transcription factor in abiotic stress.Q43275555
Gene expression in the developing aleurone and starchy endosperm of wheatQ43496508
Structural and functional partitioning of bread wheat chromosome 3B.Q44024376
Genome interplay in the grain transcriptome of hexaploid bread wheatQ46411478
mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Wheat.Q48307892
RNA-Seq bulked segregant analysis enables the identification of high-resolution genetic markers for breeding in hexaploid wheatQ85933411
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectvisualizationQ451553
data analysisQ1988917
RNA sequencingQ2542347
RNA-SeqQ68168612
RNA analysisQ95588220
P1104number of pages15
P304page(s)2172-2186
P577publication date2016-02-11
P1433published inPlant PhysiologyQ3906288
P1476titleexpVIP: a Customizable RNA-seq Data Analysis and Visualization Platform
P478volume170

Reverse relations

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