Genomics as the key to unlocking the polyploid potential of wheat

scientific article

Genomics as the key to unlocking the polyploid potential of wheat is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1111/NPH.13533
P698PubMed publication ID26108556
P5875ResearchGate publication ID279307836

P50authorPhilippa BorrillQ21264529
Cristobal UauyQ46744336
Nikolai M AdamskiQ57528655
P2860cites workSingle nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvementQ58855888
Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheatQ59203365
Ploidy influences rarity and invasiveness in plantsQ22065697
The B73 Maize Genome: Complexity, Diversity, and DynamicsQ22065899
Draft genome of the wheat A-genome progenitor Triticum urartuQ22122138
Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptationQ22122140
A physical, genetic and functional sequence assembly of the barley genomeQ22122143
Targeted re-sequencing of the allohexaploid wheat exomeQ43580903
Structural and functional partitioning of bread wheat chromosome 3B.Q44024376
The gene Sr33, an ortholog of barley Mla genes, encodes resistance to wheat stem rust race Ug99.Q44558589
Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and FornoQ44756147
Discovery and development of exome-based, co-dominant single nucleotide polymorphism markers in hexaploid wheat (Triticum aestivum L.).Q44882704
Big data in small placesQ45491643
Genome interplay in the grain transcriptome of hexaploid bread wheatQ46411478
Arabidopsis EF-Tu receptor enhances bacterial disease resistance in transgenic wheat.Q46761306
Suppression among alleles encoding nucleotide-binding-leucine-rich repeat resistance proteins interferes with resistance in F1 hybrid and allele-pyramided wheat plants.Q46877787
Progress in TILLING as a tool for functional genomics and improvement of cropsQ46920816
Targeted genome modification of crop plants using a CRISPR-Cas system.Q47822803
RNA interference suppression of genes in glycosyl transferase families 43 and 47 in wheat starchy endosperm causes large decreases in arabinoxylan content.Q47954926
Transgene-induced RNA interference: a strategy for overcoming gene redundancy in polyploids to generate loss-of-function mutationsQ48228431
Genome sequencing reveals agronomically important loci in rice using MutMapQ50503852
Genome editing in rice and wheat using the CRISPR/Cas systemQ50633917
Whole-genome sequencing of multiple Arabidopsis thaliana populationsQ51856188
Flow cytometric chromosome sorting in plants: the next generationQ53178282
TaASY1 promotes homologous chromosome interactions and is affected by deletion of Ph1.Q53450518
SHOREmap: simultaneous mapping and mutation identification by deep sequencingQ54244537
Down-regulation of Glucan, Water-Dikinase activity in wheat endosperm increases vegetative biomass and yield.Q54506343
TILLMore, a resource for the discovery of chemically induced mutants in barleyQ56992932
A map of rice genome variation reveals the origin of cultivated riceQ22122144
Analysis of the bread wheat genome using whole-genome shotgun sequencingQ22122152
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraureliaQ22122232
Multiplex genome engineering using CRISPR/Cas systemsQ24609428
RNA interference-based gene silencing as an efficient tool for functional genomics in hexaploid bread wheatQ24670632
Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploidsQ24679271
Rice epigenomics and epigenetics: challenges and opportunitiesQ26809976
Adaptive evolution in invasive speciesQ28111942
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication eventsQ28186749
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiaeQ28248858
A simple cipher governs DNA recognition by TAL effectorsQ28265506
Breaking the code of DNA binding specificity of TAL-type III effectorsQ28265515
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genomeQ29029314
Ancestral polyploidy in seed plants and angiospermsQ29617362
Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheatQ30000859
CerealsDB 2.0: an integrated resource for plant breeders and scientistsQ30485671
Comparative analysis of protein-protein interactions in the defense response of rice and wheatQ30537813
Yield stability of hybrids versus lines in wheat, barley, and triticaleQ30684579
Subfunction partitioning, the teleost radiation and the annotation of the human genome.Q33206755
A reverse genetic, nontransgenic approach to wheat crop improvement by TILLING.Q33209567
Discovery of chemically induced mutations in rice by TILLING.Q33281829
Positional cloning of the wheat vernalization gene VRN1Q33338351
Allelic variation at the VRN-1 promoter region in polyploid wheat.Q33340505
A physical map of the 1-gigabase bread wheat chromosome 3B.Q33373632
A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheatQ33497643
Transgenerational adaptation of Arabidopsis to stress requires DNA methylation and the function of Dicer-like proteinsQ33538006
Angiosperm genome comparisons reveal early polyploidy in the monocot lineageQ33591519
Separating homeologs by phasing in the tetraploid wheat transcriptomeQ33742638
A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheatQ33745562
Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functionsQ33796382
Rational association of genes with traits using a genome-scale gene network for Arabidopsis thalianaQ33801141
Mapping-by-sequencing accelerates forward genetics in barleyQ33813522
'Green revolution' genes encode mutant gibberellin response modulators.Q33869122
Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L.).Q37102583
Whole-genome sequencing reveals untapped genetic potential in Africa's indigenous cereal crop sorghumQ37137131
RNA-guided genome editing for target gene mutations in wheatQ37366548
Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yieldQ37414115
Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populationsQ37604333
Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populationsQ37614439
TILLING in extremis.Q38014972
Genomic asymmetry in allopolyploid plants: wheat as a model.Q38031812
Epigenetics and crop improvementQ38057904
Natural variations and genome-wide association studies in crop plantsQ38165965
Using next-generation sequencing to isolate mutant genes from forward genetic screensQ38241426
From phenotypes to causal sequences: using genome wide association studies to dissect the sequence basis for variation of plant developmentQ38275605
Strategies for transferring resistance into wheat: from wide crosses to GM cassettesQ38299866
Large deletions within the first intron in VRN-1 are associated with spring growth habit in barley and wheatQ38331009
Polyploidy: adaptation to the genomic environmentQ38366605
TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomicsQ38510142
Maize HapMap2 identifies extant variation from a genome in flux.Q38943891
The powdery mildew resistance gene Pm8 derived from rye is suppressed by its wheat ortholog Pm3.Q39173829
MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance islandQ41611086
Functional characterization of GPC-1 genes in hexaploid wheatQ42066177
Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A.Q43023835
Discovery of rare mutations in populations: TILLING by sequencingQ33885544
Targeted screening for induced mutationsQ33896820
Transcript‐specific, single‐nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.)Q33917352
Establishing the A. E. Watkins landrace cultivar collection as a resource for systematic gene discovery in bread wheatQ33947673
Reconstruction of the synthetic W7984 x Opata M85 wheat reference populationQ34048180
Evolution of physiological responses to salt stress in hexaploid wheatQ34060855
Semidwarf (sd-1), "green revolution" rice, contains a defective gibberellin 20-oxidase geneQ34066657
Green revolution: a mutant gibberellin-synthesis gene in riceQ34124521
The genes of the Green RevolutionQ34166086
Development of high amylose wheat through TILLING.Q34268473
Uneven distribution of expressed sequence tag loci on maize pachytene chromosomesQ34324216
Paired-end sequencing of Fosmid libraries by IlluminaQ34338922
Map-based isolation of the leaf rust disease resistance gene Lr10 from the hexaploid wheat (Triticum aestivum L.) genomeQ34394311
Ancient hybridizations among the ancestral genomes of bread wheatQ34429592
Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew.Q34429769
Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheatQ34493025
FISHIS: fluorescence in situ hybridization in suspension and chromosome flow sorting made easyQ34612738
Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism arrayQ34693524
Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).Q34984020
Triticeae resources in Ensembl PlantsQ34994742
The shutdown of celiac disease-related gliadin epitopes in bread wheat by RNAi provides flours with increased stability and better tolerance to over-mixingQ35121953
Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation SequencingQ35147024
Transgenerational epigenetic inheritance in plantsQ35178183
A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genomeQ35216239
A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomesQ35319987
Genetic dissection of the biotic stress response using a genome-scale gene network for rice.Q35546770
Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheatQ35558822
A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheatQ36533466
PolyMarker: A fast polyploid primer design pipeline.Q36614042
Divergent functions of orthologous NAC transcription factors in wheat and riceQ36636253
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivarsQ36855338
RNA interference for wheat functional gene analysisQ36977719
TaCPK2-A, a calcium-dependent protein kinase gene that is required for wheat powdery mildew resistance enhances bacterial blight resistance in transgenic riceQ37069195
A systematic genome-wide analysis of zebrafish protein-coding gene functionQ37094235
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectpolyploidyQ213410
genomicsQ222046
wheatQ15645384
P304page(s)1008-1022
P577publication date2015-06-24
P13046publication type of scholarly workreview articleQ7318358
P1433published inNew PhytologistQ13548580
P1476titleGenomics as the key to unlocking the polyploid potential of wheat
P478volume208

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cites work (P2860)
Q58603591A Genome-wide View of Transcriptome Dynamics During Early Spike Development in Bread Wheat
Q58608795A chemical genetic screen reveals that iminosugar inhibitors of plant glucosylceramide synthase inhibit root growth in Arabidopsis and cereals
Q64237699A reductionist approach to dissecting grain weight and yield in wheat
Q90621750A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat
Q36908336A splice acceptor site mutation in TaGW2-A1 increases thousand grain weight in tetraploid and hexaploid wheat through wider and longer grains
Q33622625An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations
Q96302647Applying genomic resources to accelerate wheat biofortification
Q58587911Applying the latest advances in genomics and phenomics for trait discovery in polyploid wheat
Q47098031Combined Genomic and Genetic Data Integration of Major Agronomical Traits in Bread Wheat (Triticum aestivum L.).
Q52375111Development and Applications of a High Throughput Genotyping Tool for Polyploid Crops: Single Nucleotide Polymorphism (SNP) Array
Q50074992Enabling Molecular Technologies for Trait Improvement in Wheat.
Q88083639Fine mapping and genetic association analysis of Net2, the causative D-genome locus of low temperature-induced hybrid necrosis in interspecific crosses between tetraploid wheat and Aegilops tauschii
Q55359623Function of the ERFL1a Transcription Factor in Wheat Responses to Water Deficiency.
Q38941082Fundamental wheat stripe rust research in the 21st century
Q58716410Gene editing and mutagenesis reveal inter-cultivar differences and additivity in the contribution of TaGW2 homoeologues to grain size and weight in wheat
Q92226149Genetic Screening for Mutants with Altered Seminal Root Numbers in Hexaploid Wheat Using a High-Throughput Root Phenotyping Platform
Q57795862Genetic transformation of einkorn (Triticum monococcum L. ssp. monococcum L.), a diploid cultivated wheat species
Q64080277Genome-Wide Genetic Diversity and Population Structure of Tunisian Durum Wheat Landraces Based on DArTseq Technology
Q38744360Genomic innovation for crop improvement.
Q41684572Haplotype Analysis of the Pre-harvest Sprouting Resistance Locus Phs-A1 Reveals a Causal Role of TaMKK3-A in Global Germplasm
Q57073100Heat in Wheat: Exploit Reverse Genetic Techniques to Discover New Alleles Within the sHsp26 Family
Q92511498Identification of a Dominant Chlorosis Phenotype Through a Forward Screen of the Triticum turgidum cv. Kronos TILLING Population
Q58787205Identification of induced mutations in hexaploid wheat genome using exome capture assay
Q47208939Increased pericarp cell length underlies a major quantitative trait locus for grain weight in hexaploid wheat
Q36330320Induction of targeted, heritable mutations in barley and Brassica oleracea using RNA-guided Cas9 nuclease.
Q64119672Induction, identification and characterization of tetraploidy in
Q33693765MS26/CYP704B is required for anther and pollen wall development in bread wheat (Triticum aestivum L.) and combining mutations in all three homeologs causes male sterility.
Q42245233Novel Rht-1 dwarfing genes: tools for wheat breeding and dissecting the function of DELLA proteins
Q60939548RNA Sequencing-Based Bulked Segregant Analysis Facilitates Efficient D-genome Marker Development for a Specific Chromosomal Region of Synthetic Hexaploid Wheat
Q39463546Reconciling the evolutionary origin of bread wheat (Triticum aestivum).
Q51739609Rht18 Semi-Dwarfism in Wheat is Due to Increased Expression of GA 2-oxidaseA9 and Lower GA Content
Q37077447Systematic Investigation of FLOWERING LOCUS T-Like Poaceae Gene Families Identifies the Short-Day Expressed Flowering Pathway Gene, TaFT3 in Wheat (Triticum aestivum L.).
Q64246906Uncovering Genomic Regions Associated With 36 Agro-Morphological Traits in Indian Spring Wheat Using GWAS
Q36057923cDNA Library Enrichment of Full Length Transcripts for SMRT Long Read Sequencing.
Q30488940expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform.
Q37652149mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach.

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