RNA-Seq (high-throughput nucleotide sequencing techniques for RNA)

main subject (P921)

Q66762292	Q66762292
Q55332032	"Pocket-sized RNA-Seq": A Method to Capture New Mature microRNA Produced from a Genomic Region of Interest.
Q90165923	"RNA-Seq: Methods and applications"
Q34430040	'N-of-1-pathways' unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine
Q57162805	274: Next generation sequencing (RNA-seq) of the human decidual and placental villous transcriptomes in intra-amniotic infection (IAI) induced preterm birth (PTB)
Q58738256	3' end additions by T7 RNA polymerase are RNA self-templated, distributive and diverse in character-RNA-Seq analyses
Q104511045	3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists
Q29048206	3USS: a web server for detecting alternative 3'UTRs from RNA-seq experiments
Q37602194	5'RNA-Seq identifies Fhl1 as a genetic modifier in cardiomyopathy.
Q64268532	: A Bespoke Cloud-Based Interface for RNA-seq Differential Expression Modeling and Analysis
Q111899641	SeqNet: An R Package for Generating Gene-Gene Networks and Simulating RNA-Seq Data
Q112612310	¹H NMR Metabolomics and Full-Length RNA-Seq Reveal Effects of Acylated and Nonacylated Anthocyanins on Hepatic Metabolites and Gene Expression in Zucker Diabetic Fatty Rats
Q91666847	A 3D Atlas of Hematopoietic Stem and Progenitor Cell Expansion by Multi-dimensional RNA-Seq Analysis
Q31040539	A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes
Q52721168	A Beginner's Guide to Analysis of RNA-seq Data.
Q112932364	A Bioinformatics Approach to Synthetic Lethal Interactions in Cancer with Gene Expression Data
Q36368675	A Bioinformatics Pipeline for the Identification of CHO Cell Differential Gene Expression from RNA-Seq Data.
Q47336666	A Bloody Primer: Analysis of RNA-Seq from Tissue Admixtures
Q31068684	A Class-Information-Based Sparse Component Analysis Method to Identify Differentially Expressed Genes on RNA-Seq Data.
Q112295806	A Combination of RNA-Seq Analysis and Use of TCGA Database for Determining the Molecular Mechanism and Identifying Potential Drugs for GJB1 in Ovarian Cancer
Q104487836	A Comparison of Low Read Depth QuantSeq 3' Sequencing to Total RNA-Seq in FUS Mutant Mice
Q39358609	A Comparison of Methods for RNA-Seq Differential Expression Analysis and a New Empirical Bayes Approach
Q36259923	A Comparison of RNA-Seq Results from Paired Formalin-Fixed Paraffin-Embedded and Fresh-Frozen Glioblastoma Tissue Samples
Q58698994	A Comparison of the TempO-Seq S1500+ Platform to RNA-Seq and Microarray Using Rat Liver Mode of Action Samples
Q35795486	A Comparison of transgenic and wild type soybean seeds: analysis of transcriptome profiles using RNA-Seq
Q35643055	A Comprehensive Analysis of Codon Usage Patterns in Blunt Snout Bream (Megalobrama amblycephala) Based on RNA-Seq Data
Q33829916	A Comprehensive Mouse Transcriptomic BodyMap across 17 Tissues by RNA-seq
Q61804950	A Comprehensive RNA-seq Analysis of Human Bocavirus 1 Transcripts in Infected Human Airway Epithelium
Q35875110	A Computational Pipeline for Cross-Species Analysis of RNA-seq Data Using R and Bioconductor
Q35679735	A Conserved Pattern of Primer-Dependent Transcription Initiation in Escherichia coli and Vibrio cholerae Revealed by 5' RNA-seq.
Q36194150	A Genome-Wide Transcriptional Analysis of Yeast-Hyphal Transition in Candida tropicalis by RNA-Seq
Q88690776	A Guide for Designing and Analyzing RNA-Seq Data
Q89484158	A Guide to the Chloroplast Transcriptome Analysis Using RNA-Seq
Q30640984	A Hierarchical Bayesian Model for Estimating and Inferring Differential Isoform Expression for Multi-Sample RNA-Seq Data
Q34413616	A High-Throughput Method for Illumina RNA-Seq Library Preparation
Q31153938	A Hypothesis Testing Based Method for Normalization and Differential Expression Analysis of RNA-Seq Data
Q103832888	A Method Based on Differential Entropy-Like Function for Detecting Differentially Expressed Genes Across Multiple Conditions in RNA-Seq Studies
Q46510072	A Molecular Indexing for Improved RNA-Seq
Q98771548	A Neural Network Framework for Predicting the Tissue-of-Origin of 15 Common Cancer Types Based on RNA-Seq Data
Q58781342	A New Machine Learning-Based Framework for Mapping Uncertainty Analysis in RNA-Seq Read Alignment and Gene Expression Estimation
Q27334758	A Novel Analytical Strategy to Identify Fusion Transcripts between Repetitive Elements and Protein Coding-Exons Using RNA-Seq
Q39102386	A Novel Approach for Gene Expression Optimization through Native Promoter and 5' UTR Combinations Based on RNA-seq, Ribo-seq, and TSS-seq of Streptomyces coelicolor
Q99552135	A Novel RNA-Seq-Based Model for Preoperative Prediction of Lymph Node Metastasis in Oral Squamous Cell Carcinoma
Q92164519	A Novel lnc-RNA, Named lnc-ORA, Is Identified by RNA-Seq Analysis, and Its Knockdown Inhibits Adipogenesis by Regulating the PI3K/AKT/mTOR Signaling Pathway
Q36384767	A Poisson Log-Normal Model for Constructing Gene Covariation Network Using RNA-seq Data
Q50420720	A Protocol for Epigenetic Imprinting Analysis with RNA-Seq Data.
Q91378493	A Prunus persica genome-wide RNA-seq approach uncovers major differences in the transcriptome among chilling injury sensitive and non-sensitive varieties
Q35515273	A RNA-Seq Analysis of the Rat Supraoptic Nucleus Transcriptome: Effects of Salt Loading on Gene Expression.
Q48176393	A RNA-Seq Analysis of the Response of Photosynthetic System to Low Nitrogen Supply in Maize Leaf
Q64108138	A RNA-Seq Analysis to Describe the Boar Sperm Transcriptome and Its Seasonal Changes
Q35426490	A RNA-seq approach to identify putative toxins from acrorhagi in aggressive and non-aggressive Anthopleura elegantissima polyps.
Q98472371	A Revised Adaptation of the Smart-Seq2 Protocol for Single-Nematode RNA-Seq
Q30377926	A Robust Analytical Pipeline for Genome-Wide Identification of the Genes Regulated by a Transcription Factor: Combinatorial Analysis Performed Using gSELEX-Seq and RNA-Seq.
Q31124737	A Semi-parametric Bayesian Approach for Differential Expression Analysis of RNA-seq Data
Q59806588	A Simple Guideline to Assess the Characteristics of RNA-Seq Data
Q38727829	A Study of TP53 RNA Splicing Illustrates Pitfalls of RNA-seq Methodology
Q57793279	A Survey on Plant Viruses in Natural Brassicaceae Communities Using RNA-Seq
Q38933977	A Systematic Approach to Time-series Metabolite Profiling and RNA-seq Analysis of Chinese Hamster Ovary Cell Culture
Q92617984	A Systems Analysis of the Relationships Between Anemia and Ischemic Stroke Rehabilitation Based on RNA-Seq Data
Q35971260	A Transcriptome Map of Actinobacillus pleuropneumoniae at Single-Nucleotide Resolution Using Deep RNA-Seq
Q112692895	A Transcriptomic Examination of Sexual Differentiation in Zebrafish, Danio rerio
Q60645817	A Two-Cohort RNA-seq Study Reveals Changes in Endometrial and Blood miRNome in Fertile and Infertile Women
Q89557150	A Unified Model for Joint Normalization and Differential Gene Expression Detection in RNA-Seq Data
Q47362562	A Workflow Guide to RNA-seq Analysis of Chaperone Function and Beyond
Q91762290	A Zipf-plot based normalization method for high-throughput RNA-seq data
Q39827876	A benchmark for RNA-seq quantification pipelines
Q91330478	A benchmarking of pipelines for detecting ncRNAs from RNA-Seq data
Q50080368	A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies.
Q34315594	A bi-Poisson model for clustering gene expression profiles by RNA-seq
Q27534745	A bioinformatics approach reveals seven nearly-complete RNA-virus genomes in bivalve RNA-seq data
Q35690119	A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads
Q90630632	A biological study of supernumerary teeth derived dental pulp stem cells based on RNA-seq analysis
Q100146647	A broad introduction to RNA-Seq
Q92590114	A bushel of viruses: Identification of seventeen novel putative viruses by RNA-seq in six apple trees
Q90318152	A characterization of cis- and trans-heritability of RNA-Seq-based gene expression
Q34987018	A combination of improved differential and global RNA-seq reveals pervasive transcription initiation and events in all stages of the life-cycle of functional RNAs in Propionibacterium acnes, a major contributor to wide-spread human disease
Q89502921	A combined RNA-seq and whole genome sequencing approach for identification of non-coding pathogenic variants in single families
Q58796166	A combined approach with gene-wise normalization improves the analysis of RNA-seq data in human breast cancer subtypes
Q112717985	A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery
Q38908255	A comparative analytical assay of gene regulatory networks inferred using microarray and RNA-seq datasets
Q54969572	A comparative study of RNA-Seq and microarray data analysis on the two examples of rectal-cancer patients and Burkitt Lymphoma cells.
Q41195553	A comparative study of RNA-seq analysis strategies
Q30842440	A comparative study of techniques for differential expression analysis on RNA-Seq data
Q83388689	A comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA-seq in plant species
Q34513849	A comparison of RNA-Seq and high-density exon array for detecting differential gene expression between closely related species
Q33614058	A comparison of RNA-seq and exon arrays for whole genome transcription profiling of the L5 spinal nerve transection model of neuropathic pain in the rat.
Q48353795	A comparison of honeybee (Apis mellifera) queen, worker and drone larvae by RNA-Seq.
Q112703017	A comparison of mRNA sequencing (RNA-Seq) library preparation methods for transcriptome analysis
Q34333243	A comparison of methods for differential expression analysis of RNA-seq data
Q34287060	A comparison of next generation sequencing technologies for transcriptome assembly and utility for RNA-Seq in a non-model bird
Q36359625	A comparison of per sample global scaling and per gene normalization methods for differential expression analysis of RNA-seq data.
Q28394364	A comparison of sperm RNA-seq methods
Q26822918	A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data
Q112701239	A comparison of strategies for generating artificial replicates in RNA-seq experiments
Q64109162	A complete statistical model for calibration of RNA-seq counts using external spike-ins and maximum likelihood theory
Q34434721	A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
Q36393221	A comprehensive assessment of RNA-seq protocols for degraded and low-quantity samples
Q36368819	A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae
Q34540663	A comprehensive evaluation of alignment algorithms in the context of RNA-seq
Q35576206	A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification
Q98244152	A comprehensive online database for exploring ∼20,000 public Arabidopsis RNA-Seq libraries
Q98199031	A comprehensive rat transcriptome built from large scale RNA-seq-based annotation
Q38612538	A comprehensive simulation study on classification of RNA-Seq data.
Q112638755	A computational approach to generate highly conserved gene co-expression networks with RNA-seq data
Q36329297	A computational method for estimating the PCR duplication rate in DNA and RNA-seq experiments
Q92891289	A computational system for identifying operons based on RNA-seq data
Q30835853	A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome
Q34248264	A context-based approach to identify the most likely mapping for RNA-seq experiments
Q35749763	A convex formulation for joint RNA isoform detection and quantification from multiple RNA-seq samples
Q34418610	A cost-effective method for Illumina small RNA-Seq library preparation using T4 RNA ligase 1 adenylated adapters
Q98196680	A deep learning model to predict RNA-Seq expression of tumours from whole slide images
Q36232534	A detailed view of the intracellular transcriptome of Listeria monocytogenes in murine macrophages using RNA-seq
Q61899575	A differential k-mer analysis pipeline for comparing RNA-Seq transcriptome and meta-transcriptome datasets without a reference
Q47401086	A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the chicken model
Q58078925	A fast detection of fusion genes from paired-end RNA-seq data
Q30863732	A flexible Bayesian method for detecting allelic imbalance in RNA-seq data
Q30662709	A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments.
Q36276507	A fuzzy method for RNA-Seq differential expression analysis in presence of multireads
Q41438865	A generalized dSpliceType framework to detect differential splicing and differential expression events using RNA-Seq
Q42774393	A generic plant RNA isolation method suitable for RNA-Seq and suppression subtractive hybridization
Q34217325	A genome-wide identification analysis of small regulatory RNAs in Mycobacterium tuberculosis by RNA-Seq and conservation analysis
Q28600970	A genome-wide search for epigenetically [corrected] regulated genes in zebra finch using MethylCap-seq and RNA-seq
Q38849069	A global RNA-seq-driven analysis of CHO host and production cell lines reveals distinct differential expression patterns of genes contributing to recombinant antibody glycosylation
Q36284398	A global characterization of the translational and transcriptional programs induced by methionine restriction through ribosome profiling and RNA-seq
Q38446480	A global study of transcriptome dynamics in canola (Brassica napus L.) responsive to Sclerotinia sclerotiorum infection using RNA-Seq
Q91749520	A global survey of the transcriptome of the allopolyploid Brassica napus based on single molecule long-read isoform sequencing and Illumina-based RNA-seq data
Q34110656	A global view of transcriptome dynamics during Sporisorium scitamineum challenge in sugarcane by RNA-Seq
Q92914936	A graph-based algorithm for RNA-seq data normalization
Q30489744	A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA-seq profiling
Q87568180	A high-resolution linkage map of the Rfd1, a restorer-of-fertility locus for cytoplasmic male sterility in radish (Raphanus sativus L.) produced by a combination of bulked segregant analysis and RNA-Seq
Q112679752	A high-throughput RNA-Seq approach to elucidate the transcriptional response of Piriformospora indica to high salt stress
Q35824709	A high-throughput RNA-seq approach to profile transcriptional responses
Q64093845	A high-throughput SNP discovery strategy for RNA-seq data
Q39575886	A highly multiplexed and sensitive RNA-seq protocol for simultaneous analysis of host and pathogen transcriptomes
Q97525536	A long-read RNA-seq approach to identify novel transcripts of very large genes
Q30000938	A low-cost library construction protocol and data analysis pipeline for Illumina-based strand-specific multiplex RNA-seq
Q93061522	A major QTL and candidate genes for capsaicinoid biosynthesis in the pericarp of Capsicum chinense revealed using QTL-seq and RNA-seq
Q30839991	A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-Seq data
Q112284023	A method for simultaneous detection of small and long RNA biotypes by ribodepleted RNA-Seq
Q89468169	A method for the extraction of high quality fungal RNA suitable for RNA-seq
Q34756607	A mixture model for expression deconvolution from RNA-seq in heterogeneous tissues
Q30619797	A model based criterion for gene expression calls using RNA-seq data.
Q34770515	A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples
Q44973683	A multi-Poisson dynamic mixture model to cluster developmental patterns of gene expression by RNA-seq
Q47318569	A multiple near isogenic line (multi-NIL) RNA-seq approach to identify candidate genes underpinning QTL.
Q33880484	A multiplex RNA-seq strategy to profile poly(A+) RNA: application to analysis of transcription response and 3' end formation.
Q35679367	A nested parallel experiment demonstrates differences in intensity-dependence between RNA-seq and microarrays
Q44217958	A new RNA-seq method to detect the transcription and non-coding RNA in prostate cancer
Q35861626	A new approach to bias correction in RNA-Seq
Q93046304	A new era of long-read sequencing for cancer genomics
Q34655714	A new method for stranded whole transcriptome RNA-seq
Q34419135	A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data
Q36228448	A new strategy to reduce allelic bias in RNA-Seq readmapping
Q34776847	A note on an exon-based strategy to identify differentially expressed genes in RNA-seq experiments
Q34408031	A novel computational strategy to identify A-to-I RNA editing sites by RNA-Seq data: de novo detection in human spinal cord tissue
Q47439904	A novel feature selection for RNA-seq analysis
Q112718916	A novel function for cyclin D1 as a transcriptional role in oncogenesis and tumor development by ChIP-Seq and RNA-Seq
Q35156937	A novel highly divergent protein family identified from a viviparous insect by RNA-seq analysis: a potential target for tsetse fly-specific abortifacients
Q40078949	A novel method for genome-wide profiling of dynamic host-pathogen interactions using 3' end enriched RNA-seq
Q100495718	A novel method for using RNA-seq data to identify imprinted genes in social Hymenoptera with multiply mated queens
Q34756217	A novel min-cost flow method for estimating transcript expression with RNA-Seq
Q31060688	A novel model used to detect differential splice junctions as biomarkers in prostate cancer from RNA-Seq data.
Q98562943	A novel scoring method based on RNA-Seq immunograms describing individual cancer-immunity interactions
Q30762220	A novel statistical approach for jointly analyzing RNA-Seq data from F1 reciprocal crosses and inbred lines.
Q93216174	A novel targeted RNA-Seq panel identifies a subset of adult patients with acute lymphoblastic leukemia with BCR-ABL1-like characteristics
Q89341636	A novel three‑miRNA signature predicts survival in cholangiocarcinoma based on RNA‑Seq data
Q31002149	A novel workflow correlating RNA-seq data to Phythophthora infestans resistance levels in wild Solanum species and potato clones
Q28651408	A phylogenetic backbone for Bivalvia: an RNA-seq approach
Q99708453	A pilot RNA-seq study in 40 pietrain ejaculates to characterize the porcine sperm microbiome
Q112717776	A pipeline for RNA-seq based eQTL analysis with automated quality control procedures
Q33793001	A pipeline for RNA-seq data processing and quality assessment
Q35059540	A platform independent RNA-Seq protocol for the detection of transcriptome complexity
Q34004487	A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data
Q97686131	A practical application of generative adversarial networks for RNA-seq analysis to predict the molecular progress of Alzheimer's disease
Q35676945	A preliminary study of the mechanism of nitrate-stimulated remarkable increase of rifamycin production in Amycolatopsis mediterranei U32 by RNA-seq
Q31009753	A probabilistic approach for automated discovery of perturbed genes using expression data from microarray or RNA-Seq.
Q33615594	A probabilistic framework for aligning paired-end RNA-seq data
Q28657677	A protocol for visual analysis of alternative splicing in RNA-Seq data using integrated genome browser
Q112283168	A protocol to extract cell-type-specific signatures from differentially expressed genes in bulk-tissue RNA-seq
Q34398270	A putative role for amino acid permeases in sink-source communication of barley tissues uncovered by RNA-seq
Q35501080	A rapid, simple, and inexpensive method for the preparation of strand-specific RNA-Seq libraries.
Q30486696	A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Q33785895	A reference gene set construction using RNA-seq of multiple tissues of Chinese giant salamander, Andrias davidianus
Q31027225	A resource of ribosomal RNA-depleted RNA-Seq data from different normal adult and fetal human tissues
Q36028352	A robust (re-)annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related species.
Q30596722	A robust method for transcript quantification with RNA-seq data.
Q24628783	A scaling normalization method for differential expression analysis of RNA-seq data
Q57454184	A semi-supervised deep learning method based on stacked sparse auto-encoder for cancer prediction using RNA-seq data
Q34275173	A simple strand-specific RNA-Seq library preparation protocol combining the Illumina TruSeq RNA and the dUTP methods
Q33991900	A statistical framework for eQTL mapping using RNA-seq data
Q36045208	A statistical method for detecting differentially expressed SNVs based on next-generation RNA-seq data.
Q33523803	A statistical method for the detection of alternative splicing using RNA-seq
Q64100883	A statistical normalization method and differential expression analysis for RNA-seq data between different species
Q33483317	A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi
Q31109250	A structured sparse regression method for estimating isoform expression level from multi-sample RNA-seq data
Q28071394	A survey of best practices for RNA-seq data analysis
Q30738937	A survey of software for genome-wide discovery of differential splicing in RNA-Seq data
Q46263832	A survey of software tools for microRNA discovery and characterization using RNA-seq
Q33755665	A survey of statistical software for analysing RNA-seq data
Q91565999	A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data
Q30940449	A system level analysis of gastric cancer across tumor stages with RNA-seq data
Q34322438	A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease
Q104132451	A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine
Q53691365	A technical assessment of the porcine ejaculated spermatozoa for a sperm-specific RNA-seq analysis.
Q91892949	A transcriptomic (RNA-seq) analysis of genes responsive to both cadmium and arsenic stress in rice root
Q47146785	A transcriptomic study of myogenic differentiation under the overexpression of PPARγ by RNA-Seq.
Q90977137	A transcriptomic study of selenium against liver injury induced by beta-cypermethrin in mice by RNA-seq
Q33645223	A two-parameter generalized Poisson model to improve the analysis of RNA-seq data
Q31138664	A two-step integrated approach to detect differentially expressed genes in RNA-Seq data
Q112615616	A versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathways
Q89792530	A whole-tissue RNA-seq toolkit for organism-wide studies of gene expression with PME-seq
Q46627451	AB227. RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant alternative splicings
Q36094224	ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
Q33892425	ACE: an efficient and sensitive tool to detect insecticide resistance-associated mutations in insect acetylcholinesterase from RNA-Seq data
Q112638551	ALGAEFUN with MARACAS, microALGAE FUNctional enrichment tool for MicroAlgae RnA-seq and Chip-seq AnalysiS
Q57344156	ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes
Q34812367	ANOVA-like differential expression (ALDEx) analysis for mixed population RNA-Seq
Q51156960	APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data.
Q92420221	APERO: a genome-wide approach for identifying bacterial small RNAs from RNA-Seq data
Q30830564	ARH-seq: identification of differential splicing in RNA-seq data
Q92020787	ARMOR: An Automated Reproducible MOdular Workflow for Preprocessing and Differential Analysis of RNA-seq Data
Q112644242	ARMT: An automatic RNA-seq data mining tool based on comprehensive and integrative analysis in cancer research
Q112729469	ARPIR: automatic RNA-Seq pipelines with interactive report
Q59329889	ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
Q97650224	ASNEO: Identification of personalized alternative splicing based neoantigens with RNA-seq
Q34609314	Ab initio identification of transcription start sites in the Rhesus macaque genome by histone modification and RNA-Seq
Q58780488	Aberrantly Expressed Genes and miRNAs in Slow Transit Constipation Based on RNA-Seq Analysis
Q57888154	Abstract 105: Bioinformatic analysis of RNA-Seq data to search for novel diagnostic/prognostic biomarkers of pancreatic ductal adenocarcinoma
Q57077975	Abstract 1987: RNA-seq of the bronchial airway transcriptome identifies novel gene and microRNA expression changes associated with smoking and lung cancer
Q97417975	Abundant and Diverse RNA Viruses in Insects Revealed by RNA-Seq Analysis: Ecological and Evolutionary Implications
Q42774104	Accelerating the design of biomimetic materials by integrating RNA-seq with proteomics and materials science.
Q34548839	Accuracy of RNA-Seq and its dependence on sequencing depth
Q35015999	Accuracy of allele frequency estimation using pooled RNA-Seq
Q90987817	Accurate Adapter Information Is Crucial for Reproducibility and Reusability in Small RNA Seq Studies
Q91938014	Accurate Classification of Differential Expression Patterns in a Bayesian Framework With Robust Normalization for Multi-Group RNA-Seq Count Data
Q42696895	Accurate Profiling and Quantification of tRNA Fragments from RNA-Seq Data: A Vade Mecum for MINTmap
Q51594955	Accurate estimation of expression levels of homologous genes in RNA-seq experiments.
Q30898472	Accurate inference of isoforms from multiple sample RNA-Seq data.
Q30883936	Accurate mapping of RNA-Seq data
Q33741294	Accurate quantification of transcriptome from RNA-Seq data by effective length normalization
Q31147507	Acfs: accurate circRNA identification and quantification from RNA-Seq data
Q55244563	Adapting the Smart-seq2 Protocol for Robust Single Worm RNA-seq.
Q35878903	Adeno-associated virus gene therapy vector scAAVIGF-I for transduction of equine articular chondrocytes and RNA-seq analysis
Q91608899	Adipose lipidomics and RNA-Seq analysis revealed the enhanced mitochondrial function in UCP1 knock-in pigs
Q39920185	Advancements in RNASeqGUI towards a Reproducible Analysis of RNA-Seq Experiments
Q84199340	Advancing RNA-Seq analysis
Q99347113	Advantages of CEMiTool for gene co-expression analysis of RNA-seq data
Q38658133	Advantages of RNA-seq compared to RNA microarrays for transcriptome profiling of anterior cruciate ligament tears
Q112707193	Age Effects Aggressive Behavior: RNA-Seq Analysis in Cattle with Implications for Studying Neoteny Under Domestication
Q34444652	Age-related changes of gene expression in the neocortex: preliminary data on RNA-Seq of the transcriptome in three functionally distinct cortical areas
Q58719239	AgriSeqDB: an online RNA-Seq database for functional studies of agriculturally relevant plant species
Q64245977	Allele-specific RNA-seq expression profiling of imprinted genes in mouse isogenic pluripotent states
Q30619762	Allelic imbalance metre (Allim), a new tool for measuring allele-specific gene expression with RNA-seq data.
Q30584120	Alt Event Finder: a tool for extracting alternative splicing events from RNA-seq data
Q59223463	AltHapAlignR: improved accuracy of RNA-seq analyses through the use of alternative haplotypes
Q49986148	Alterations in expression levels of genes in p53-related pathways determined using RNA-Seq analysis in patients with breast cancer following CIK therapy.
Q92538714	Alternating EM algorithm for a bilinear model in isoform quantification from RNA-seq data
Q31001936	Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).
Q92891967	Alternative splicing, RNA-seq and drug discovery
Q88501537	Aluminum-responsive genes revealed by RNA-Seq and related physiological responses in leaves of two Citrus species with contrasting aluminum-tolerance
Q39489914	An Approach for Assessing RNA-seq Quantification Algorithms in Replication Studies
Q59133780	An Efficient Algorithm for Sensitively Detecting Circular RNA from RNA-seq Data
Q109048455	An Infection-Tolerant Mammalian Reservoir for Several Zoonotic Agents Broadly Counters the Inflammatory Effects of Endotoxin
Q31112972	An Integrated Approach for RNA-seq Data Normalization
Q42589782	An Interspecies Regulatory Network Inferred from Simultaneous RNA-seq of Candida albicans Invading Innate Immune Cells
Q30964532	An Iterative Leave-One-Out Approach to Outlier Detection in RNA-Seq Data
Q60228313	An Online Compendium of CHO RNA-Seq Data Allows Identification of CHO Cell Line-Specific Transcriptomic Signatures
Q37614597	An RNA-Seq Analysis of Grape Plantlets Grown in vitro Reveals Different Responses to Blue, Green, Red LED Light, and White Fluorescent Light
Q92884749	An RNA-Seq Protocol for Differential Expression Analysis
Q46243031	An RNA-Seq atlas of gene expression in mouse and rat normal tissues.
Q34333041	An RNA-Seq based gene expression atlas of the common bean
Q34079275	An RNA-Seq strategy to detect the complete coding and non-coding transcriptome including full-length imprinted macro ncRNAs
Q34496399	An RNA-Seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants.
Q38862426	An RNA-Seq transcriptome analysis revealing novel insights into aluminum tolerance and accumulation in tea plant
Q38459443	An RNA-Seq-based reference transcriptome for Citrus
Q98224808	An RNA-seq Based Machine Learning Approach Identifies Latent Tuberculosis Patients With an Active Tuberculosis Profile
Q90713381	An RNA-seq based comparative approach reveals the transcriptome-wide interplay between 3'-to-5' exoRNases and RNase Y
Q51730595	An RNA-seq based transcriptomic investigation into the productivity and growth variants with Chinese hamster ovary cells.
Q28486509	An RNA-seq method for defining endoribonuclease cleavage specificity identifies dual rRNA substrates for toxin MazF-mt3.
Q90638914	An RNA-seq primer for pulmonologists
Q34647373	An RNA-seq protocol to identify mRNA expression changes in mouse diaphyseal bone: applications in mice with bone property altering Lrp5 mutations
Q50058955	An RNA-seq screen of P. gingivalis LPS treated human gingival fibroblasts.
Q28651698	An RNA-seq screen of the Drosophila antenna identifies a transporter necessary for ammonia detection
Q35421944	An RNA-seq transcriptome analysis of floral buds of an interspecific Brassica hybrid between B. carinata and B. napus
Q33356765	An RNA-seq transcriptome analysis of histone modifiers and RNA silencing genes in soybean during floral initiation process
Q64066849	An RNA-seq-Based Expression Profiling of Radiation-Induced Esophageal Injury in a Rat Model
Q37319951	An RNA-seq-based gene expression profiling of radiation-induced tumorigenic mammary epithelial cells
Q35924636	An advanced bioinformatics approach for analyzing RNA-seq data reveals sigma H-dependent regulation of competence genes in Listeria monocytogenes
Q42682635	An analysis of 67 RNA-seq datasets from various tissues at different stages of a model insect, Manduca sexta
Q35684840	An automated RNA-Seq analysis pipeline to identify and visualize differentially expressed genes and pathways in CHO cells
Q31095805	An automated approach for global identification of sRNA-encoding regions in RNA-Seq data from Mycobacterium tuberculosis
Q35603451	An automated method for efficient, accurate and reproducible construction of RNA-seq libraries
Q40337716	An effective analytic method for detecting tissue-specific genes in RNA-seq experiments
Q89600864	An efficient RNA-seq-based segregation analysis identifies the sex chromosomes of Cannabis sativa
Q33950917	An efficient approach to finding Siraitia grosvenorii triterpene biosynthetic genes by RNA-seq and digital gene expression analysis.
Q39260223	An empirical likelihood ratio test robust to individual heterogeneity for differential expression analysis of RNA-seq
Q30945354	An empirical strategy to detect bacterial transcript structure from directional RNA-seq transcriptome data
Q30958641	An evaluation of public genomic references for mapping RNA-Seq data from Chinese hamster ovary cells
Q28656086	An experimental and bioinformatics protocol for RNA-Seq analyses of photoperiodic diapause in the Asian tiger mosquito, Aedes albopictus
Q35140559	An insight into the genes involved in secoiridoid biosynthesis in Gentiana macrophylla by RNA-seq
Q38461447	An integrated RNA-Seq and network study reveals a complex regulation process of rice embryo during seed germination
Q92744329	An integrated RNA-Seq and network study reveals the effect of nicotinamide on adrenal androgen synthesis
Q99357318	An integrated network pharmacology and RNA-Seq approach for exploring the preventive effect of Lonicerae japonicae flos on LPS-induced acute lung injury
Q28831107	An integrative analysis of DNA methylation and RNA-Seq data for human heart, kidney and liver
Q31165581	An integrative method to normalize RNA-Seq data
Q112465640	An investigation into the whole transcriptome in Alzheimer's disease - contribution of coding and non-coding RNA
Q34460312	An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era
Q30857515	An iteration normalization and test method for differential expression analysis of RNA-seq data
Q25708283	An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
Q30657447	An optimal test with maximum average power while controlling FDR with application to RNA-seq data
Q28833416	An optimized protocol for generation and analysis of Ion Proton sequencing reads for RNA-Seq
Q112694807	An optimized protocol for single nuclei isolation from clinical biopsies for RNA-seq
Q94603550	An ultrasensitive T-cell receptor detection method for TCR-Seq and RNA-Seq data
Q28596936	Analyses of RNA-Seq and sRNA-Seq data reveal a complex network of anti-viral defense in TCV-infected Arabidopsis thaliana
Q51797707	Analysis RNA-seq and Noncoding RNA.
Q92361294	Analysis and Differential Expression of Primo Genes Using RNA-Seq and qRT-PCR Experiments
Q45943025	Analysis and Prediction of Exon Skipping Events from RNA-Seq with Sequence Information Using Rotation Forest.
Q39820989	Analysis and Visualization of ChIP-Seq and RNA-Seq Sequence Alignments Using ngs.plot
Q30908206	Analysis and visualization of RNA-Seq expression data using RStudio, Bioconductor, and Integrated Genome Browser
Q64066199	Analysis by RNA-seq of transcriptomic changes elicited by heat shock in Leishmania major
Q38244759	Analysis considerations for utilizing RNA-Seq to characterize the brain transcriptome
Q51243951	Analysis of Annotation and Differential Expression Methods used in RNA-seq Studies in Crustacean Systems.
Q88690823	Analysis of ChIP-Seq and RNA-Seq Data with BioWardrobe
Q64081282	Analysis of Differentially Expressed lncRNAs and mRNAs for the Identification of Hypoxia-Regulated Angiogenic Genes in Colorectal Cancer by RNA-Seq
Q42778220	Analysis of Genes with Alternatively Spliced Transcripts in the Leaf, Root, Panicle and Seed of Rice Using a Long Oligomer Microarray and RNA-Seq
Q96644236	Analysis of Inflammatory and Homeostatic Roles of Tissue-resident Macrophages in the Progression of Cholesteatoma by RNA-Seq
Q31125443	Analysis of Microarray and RNA-seq Expression Profiling Data
Q87973536	Analysis of RNA Editing Sites from RNA-Seq Data Using GIREMI
Q52672632	Analysis of RNA-Seq Data Using TEtranscripts.
Q31014122	Analysis of RNA-Seq Data Using TopHat and Cufflinks
Q34560299	Analysis of RNA-Seq data reveals involvement of JAK/STAT signalling during leg regeneration in the cricket Gryllus bimaculatus
Q30619802	Analysis of RNA-Seq data with TopHat and Cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures
Q64446568	Analysis of RNA-Seq datasets reveals enrichment of tissue-specific splice variants for nuclear envelope proteins
Q40551387	Analysis of Retinal Development and Diseases Using RNA-Seq
Q104559598	Analysis of Whole Transcriptome RNA-seq Data Reveals Many Alternative Splicing Events in Soybean Roots under Drought Stress Conditions
Q112639583	Analysis of Whole-Transcriptome RNA-Seq Data Reveals the Involvement of Alternative Splicing in the Drought Response of Glycyrrhiza uralensis
Q37269736	Analysis of allele-specific expression in mouse liver by RNA-Seq: a comparison with Cis-eQTL identified using genetic linkage
Q92817497	Analysis of allele-specific expression using RNA-seq of the Korean native pig and Landrace reciprocal cross
Q92407662	Analysis of alternative cleavage and polyadenylation in mature and differentiating neurons using RNA-seq data
Q40105056	Analysis of an RNA-seq Strand-Specific Library Sample Reveals a Complete Genome of Hardenbergia mosaic virus from Native Wisteria, an Indigenous Virus from Southwest Australia
Q36369690	Analysis of an RNA-seq Strand-Specific Library from an East Timorese Cucumber Sample Reveals a Complete Cucurbit aphid-borne yellows virus Genome
Q37085360	Analysis of chromosomal aberrations and recombination by allelic bias in RNA-Seq
Q90351378	Analysis of differential gene expression by RNA-seq data in ABCG1 knockout mice
Q47672929	Analysis of differential gene expression by RNA-seq data in brain areas of laboratory animal
Q31161126	Analysis of differential gene expression by RNA-seq data in brain areas of laboratory animals
Q94527462	Analysis of differentially expressed genes and pathways associated with male sterility lines in watermelon via bulked segregant RNA-seq
Q36102217	Analysis of ethanol fermentation mechanism of ethanol producing white-rot fungus Phlebia sp. MG-60 by RNA-seq.
Q38475254	Analysis of gene expression changes in peach leaves in response to Plum pox virus infection using RNA-Seq
Q30975976	Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation.
Q35892299	Analysis of paired end Pol II ChIP-seq and short capped RNA-seq in MCF-7 cells
Q30909502	Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum
Q34769092	Analysis of stress-responsive transcriptome in the intestine of Asian seabass (Lates calcarifer) using RNA-seq.
Q35048061	Analysis of the Bovine Monocyte-Derived Macrophage Response to Mycobacterium avium Subspecies Paratuberculosis Infection Using RNA-seq
Q40127025	Analysis of the black-chinned tilapia Sarotherodon melanotheron heudelotii reproducing under a wide range of salinities: from RNA-seq to candidate genes.
Q33618104	Analysis of the in planta transcriptome expressed by the corn pathogen Pantoea stewartii subsp. stewartii via RNA-Seq
Q55246135	Analysis of the resistance mechanisms in sugarcane during Sporisorium scitamineum infection using RNA-seq and microscopy.
Q112721134	Analysis of the role of Purα in the pathogenesis of Alzheimer's disease based on RNA-seq and ChIP-seq
Q92893087	Analysis of the translatome in solid tumors using polyribosome profiling/RNA-Seq
Q99563027	Analyzing Differentially Expressed Genes and Pathways Associated with Pistil Abortion in Japanese Apricot via RNA-Seq
Q31144651	Analyzing Prokaryotic RNA-Seq Data: A Case Study Identifying Holo-Fur Regulated Genes in Campylobacter jejuni
Q92015769	Anatomy and RNA-Seq reveal important gene pathways regulating sex differentiation in a functionally Androdioecious tree, Tapiscia sinensis
Q93345006	Ancestral Transcriptome Inference Based on RNA-Seq and ChIP-seq Data
Q90212963	Ancestry patterns inferred from massive RNA-seq data
Q113558832	Androgen receptor physically associated LincRNAs can modify the local chromatin profile and transcriptome
Q47100530	Annotating and quantifying pri-miRNA transcripts using RNA-Seq data of wild type and serrate-1 globular stage embryos of Arabidopsis thaliana.
Q28476559	Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans
Q47820903	Antigen receptor repertoire profiling from RNA-seq data.
Q38465548	Apple russeting as seen through the RNA-seq lens: strong alterations in the exocarp cell wall
Q42778123	Application of RNA-Seq Technology in Cancer Chemoprevention
Q35785330	Application of RNA-Seq transcriptome analysis: CD151 is an Invasion/Migration target in all stages of epithelial ovarian cancer
Q49484027	Application of RNA-seq and Bioimaging Methods to Study Microbe-Microbe Interactions and Their Effects on Biofilm Formation and Gene Expression.
Q28595639	Application of RNA-seq for mitogenome reconstruction, and reconsideration of long-branch artifacts in Hemiptera phylogeny
Q26864873	Application of RNA-seq to reveal the transcript profile in bacteria
Q45099278	Application of qRT-PCR and RNA-Seq analysis for the identification of housekeeping genes useful for normalization of gene expression values during Striga hermonthica development.
Q92011024	Applying minimal RNA-seq of peripheral blood platelet mRNA to reveal novel biomarkers in male patients with cerebral stroke
Q96638462	Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients
Q101459754	Approaching RNA-seq for Cell Line Identification
Q55094347	Approximate inference of gene regulatory network models from RNA-Seq time series data.
Q108126752	Appyters: Turning Jupyter Notebooks into data-driven web apps
Q90899066	AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana
Q47099773	Arbuscular Mycorrhizal Fungus Enhances Lateral Root Formation in Poncirus trifoliata (L.) as Revealed by RNA-Seq Analysis
Q91923712	Arbuscular mycorrhizal fungus alleviates alfalfa leaf spots caused by Phoma medicaginis revealed by RNA-seq analysis
Q108899179	As above, so below: Whole transcriptome profiling demonstrates strong molecular similarities between avian dorsal and ventral pallial subdivisions
Q30918610	Assessing allele-specific expression across multiple tissues from RNA-seq read data
Q28601923	Assessing models of speciation under different biogeographic scenarios; an empirical study using multi-locus and RNA-seq analyses
Q30920663	Assessing the consistency of public human tissue RNA-seq data sets
Q35101492	Assessing the impact of human genome annotation choice on RNA-seq expression estimates
Q91148913	Assessing the partners of the RBP9-mRNP complex in Trypanosoma cruzi using shotgun proteomics and RNA-seq
Q35171635	Assessing the prevalence of mycoplasma contamination in cell culture via a survey of NCBI's RNA-seq archive
Q88504464	Assessment of Embryo-Induced Transcriptomic Changes in Hamster Uterus Using RNA-Seq
Q41198594	Assessment of T-cell receptor repertoire and clonal expansion in peripheral T-cell lymphoma using RNA-seq data
Q53272745	Assessment of data transformations for model-based clustering of RNA-Seq data.
Q38817085	Assessment of engineered cells using CellNet and RNA-seq.
Q90006519	Assessment of kinship detection using RNA-seq data
Q42774372	Assessment of myometrial transcriptome changes associated with spontaneous human labour by high-throughput RNA-seq
Q31172489	Assessment of the impact of using a reference transcriptome in mapping short RNA-Seq reads
Q34382192	Assessment of transcript reconstruction methods for RNA-seq
Q91550978	Assessment of viral RNA in idiopathic pulmonary fibrosis using RNA-seq
Q35392744	Asymmetric transcript discovery by RNA-seq in C. elegans blastomeres identifies neg-1, a gene important for anterior morphogenesis.
Q35991190	AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression
Q113348815	Author Correction: Characterization and RNA-seq transcriptomic analysis of a Scenedesmus obliqnus mutant with enhanced photosynthesis efficiency and lipid productivity
Q91292026	Author Correction: De novo assembly of the Platycladus orientalis (L.) Franco transcriptome provides insight into the development and pollination mechanism of female cone based on RNA-Seq data
Q102220273	Author Correction: RNA-Seq reveals novel genes and pathways associated with hypoxia duration and tolerance in tomato root
Q89556184	Author Correction: RNA-seq of serial kidney biopsies obtained during progression of chronic kidney disease from dogs with X-linked hereditary nephropathy
Q55324237	Author Correction: UClncR: Ultrafast and comprehensive long non-coding RNA detection from RNA-seq.
Q53073184	Author Correction: Understanding the functional role of genistein in the bone differentiation in mouse osteoblastic cell line MC3T3-E1 by RNA-seq analysis.
Q100490808	Author Correction: Whole-genome and time-course dual RNA-Seq analyses reveal chronic pathogenicity-related gene dynamics in the ginseng rusty root rot pathogen Ilyonectria robusta
Q111441103	AutoGeneS: Automatic gene selection using multi-objective optimization for RNA-seq deconvolution
Q112729220	Automated Isoform Diversity Detector (AIDD): a pipeline for investigating transcriptome diversity of RNA-seq data
Q38613610	Automated identification of reference genes based on RNA-seq data.
Q91800470	Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics
Q31012687	B-Cell and Monocyte Contribution to Systemic Lupus Erythematosus Identified by Cell-Type-Specific Differential Expression Analysis in RNA-Seq Data
Q30855028	BADGE: a novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data.
Q91560826	BALLI: Bartlett-adjusted likelihood-based linear model approach for identifying differentially expressed genes with RNA-seq data
Q96020596	BEAVR: a browser-based tool for the exploration and visualization of RNA-seq data
Q99720171	BP4RNAseq: a babysitter package for retrospective and newly generated RNA-seq data analyses using both alignment-based and alignment-free quantification method
Q40331996	BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS.
Q34620523	BRANCH: boosting RNA-Seq assemblies with partial or related genomic sequences
Q91909688	BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq
Q92857429	Bacterial Acid Resistance Toward Organic Weak Acid Revealed by RNA-Seq Transcriptomic Analysis in Acetobacter pasteurianus
Q59282311	Bacterial metatranscriptome analysis of a probiotic yogurt using an RNA-Seq approach
Q35566022	Bariatric Surgery Induces Disruption in Inflammatory Signaling Pathways Mediated by Immune Cells in Adipose Tissue: A RNA-Seq Study
Q97078530	Based on RNA-Seq analysis identification and expression analysis of Trans-scripusinA synthesize-related genes of UV-treatment in postharvest grape fruit
Q38465125	Basing RNA-seq explored the regulatory mechanism of the carbohydrate metabolism pathways during chicken male germ cell differentiation.
Q35697267	Bayesian Hierarchical Model for Differential Gene Expression Using RNA-seq Data
Q96431827	Bayesian Hyper-LASSO Classification for Feature Selection with Application to Endometrial Cancer RNA-seq Data
Q47676988	Bayesian estimation of differential transcript usage from RNA-seq data.
Q102330104	Become Competent in Generating RNA-Seq Heat Maps in One Day for Novices Without Prior R Experience
Q34308571	Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts discovery based on accurate fusion model
Q30991504	Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data
Q37213164	Benchmarking RNA-Seq quantification tools
Q94468545	Benchmarking RNA-seq differential expression analysis methods using spike-in and simulation data
Q112642660	Benchmarking association analyses of continuous exposures with RNA-seq in observational studies
Q55715465	Benchmarking differential expression analysis tools for RNA-Seq: normalization-based vs. log-ratio transformation-based methods.
Q46310425	Bias and Correction in RNA-seq Data for Marine Species
Q31047841	BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data
Q64121144	BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud
Q35225825	BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis.
Q31117737	Bioinformatic analysis of RNA-seq data unveiled critical genes in rectal adenocarcinoma
Q112287681	Bioinformatics Analysis Using ATAC-seq and RNA-seq for the Identification of 15 Gene Signatures Associated With the Prediction of Prognosis in Hepatocellular Carcinoma
Q92836981	Bioinformatics Approaches to Studying Plant Long Noncoding RNAs (lncRNAs): Identification and Functional Interpretation of lncRNAs from RNA-Seq Data Sets
Q38662514	Bioinformatics analysis of RNA-seq data revealed critical genes in colon adenocarcinoma
Q90657566	Bioinformatics analysis of vascular RNA-seq data revealed hub genes and pathways in a novel Tibetan minipig atherosclerosis model induced by a high fat/cholesterol diet
Q89239660	Biological classification with RNA-seq data: Can alternatively spliced transcript expression enhance machine learning classifiers?
Q55502476	Biomarker Identification from RNA-Seq Data using a Robust Statistical Approach.
Q37501759	Biotechnological applications of mobile group II introns and their reverse transcriptases: gene targeting, RNA-seq, and non-coding RNA analysis
Q35074625	Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching
Q40749575	BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles
Q36614763	Blood Transcriptome Profiling in Myasthenia Gravis Patients to Assess Disease Activity: A Pilot RNA-seq Study
Q59323096	Blood biomarkers of the late phase asthmatic response using RNA-Seq
Q37264362	Boiler: lossy compression of RNA-seq alignments using coverage vectors
Q34593280	Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates
Q33755372	Brain RNA-Seq Profiling of the Mucopolysaccharidosis Type II Mouse Model
Q64892768	Breast cancer PAM50 signature: correlation and concordance between RNA-Seq and digital multiplexed gene expression technologies in a triple negative breast cancer series.
Q30901343	Bridger: a new framework for de novo transcriptome assembly using RNA-seq data
Q85277731	Bringing RNA-seq closer to the clinic
Q55285502	Broad distribution spectrum from Gaussian to power law appears in stochastic variations in RNA-seq data.
Q42777877	BrowserGenome.org: web-based RNA-seq data analysis and visualization
Q101232452	Bulk RNA-Seq analysis to dissect the regulation of stigma position in tomato
Q35077058	Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish
Q113697211	Bulk segregant analysis-sequencing and RNA-Seq analyses reveal candidate genes associated with albino phenotype in Brassica napus
Q96345267	Bulked Segregant RNA-Seq Reveals Distinct Expression Profiling in Chinese Wheat Cultivar Jimai 23 Responding to Powdery Mildew
Q33795213	Bulked Segregant RNA-seq Reveals Differential Expression and SNPs of Candidate Genes Associated with Waterlogging Tolerance in Maize
Q90190656	Bulked segregant analysis RNA-seq (BSR-Seq) validated a stem resistance locus in Aegilops umbellulata, a wild relative of wheat
Q93211247	CAARS: comparative assembly and annotation of RNA-Seq data
Q30989599	CADBURE: A generic tool to evaluate the performance of spliced aligners on RNA-Seq data
Q91992555	CAFU: a Galaxy framework for exploring unmapped RNA-Seq data
Q31014129	CAMUR: Knowledge extraction from RNA-seq cancer data through equivalent classification rules
Q36368446	CEDER: accurate detection of differentially expressed genes by combining significance of exons using RNA-Seq
Q36959041	CLASS2: accurate and efficient splice variant annotation from RNA-seq reads
Q34756203	CLASS: constrained transcript assembly of RNA-seq reads
Q89625740	CLEAR: coverage-based limiting-cell experiment analysis for RNA-seq
Q42695540	CLIFinder: Identification of LINE-1 Chimeric Transcripts in RNA-seq data.
Q64133470	COEX-Seq: Convert a Variety of Measurements of Gene Expression in RNA-Seq
Q90282221	COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis
Q47142228	CORNAS: coverage-dependent RNA-Seq analysis of gene expression data without biological replicates
Q27499736	CRAC: an integrated approach to the analysis of RNA-seq reads
Q98649750	CRISPR-Mediated Depletion of Ribosomal RNA-Derived DNA from RNA-Seq NGS Libraries
Q112706281	CRISPRroots: on- and off-target assessment of RNA-seq data in CRISPR-Cas9 edited cells
Q47216185	CRNET: An efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data.
Q94148995	CSIG-07. COMPARATIVE RNA-SEQ ANALYSIS OF GLIOMAS OF DIFFERENT MALIGNANCY IDENTIFIES FYN AS A NOVEL REGULATOR OF GBM AGGRESSIVENESS
Q35064246	Can RNA-Seq resolve the rapid radiation of advanced moths and butterflies (Hexapoda: Lepidoptera: Apoditrysia)? An exploratory study
Q35851453	Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells
Q42777947	Cancer genetics: RNA-seq for blood-based pan-cancer diagnostics
Q100992651	Cancer testis antigens in myelodysplastic syndromes revisited: a targeted RNA-seq approach
Q55270293	Candidate Genes as Biomarkers in Lipopolysaccharide-Induced Acute Respiratory Distress Syndrome Based on mRNA Expression Profile by Next-Generation RNA-Seq Analysis.
Q88392925	Candidate genes of flavonoid biosynthesis in Selaginella bryopteris (L.) Baker identified by RNA-Seq
Q100954574	Cannabidiol (CBD) enhanced the hippocampal immune response and autophagy of APP/PS1 Alzheimer's mice uncovered by RNA-seq
Q28708868	Canonical correlation analysis for RNA-seq co-expression networks
Q97906979	CapZyme-Seq: A 5'-RNA-Seq Method for Differential Detection and Quantitation of NAD-Capped and Uncapped 5'-Triphosphate RNA
Q42777697	Capture and Identification of miRNA Targets by Biotin Pulldown and RNA-seq
Q28950555	Carcinogenic effects of oil dispersants: a KEGG pathway-based RNA-seq study of human airway epithelial cells
Q35904385	Cascade: an RNA-seq visualization tool for cancer genomics
Q91290213	Case Study: Systematic Detection and Prioritization of Gene Fusions in Cancer by RNA-Seq: A DIY Toolkit
Q38755085	Caspase-related apoptosis genes in gliomas by RNA-seq and bioinformatics analysis
Q39455397	Catalyzing plant science research with RNA-seq
Q30598661	CathaCyc, a metabolic pathway database built from Catharanthus roseus RNA-Seq data
Q54327209	Caught in the act: RNA-Seq provides novel insights into mRNA degradation.
Q61799726	CeL-ID: cell line identification using RNA-seq data
Q35545431	Cell type-specific gene expression profiling in brain tissue: comparison between TRAP, LCM and RNA-seq
Q42772939	Cell walls of developing wheat starchy endosperm: comparison of composition and RNA-Seq transcriptome
Q57801391	Cell-type specific RNA-Seq reveals novel roles and regulatory programs for terminally differentiated Dictyostelium cells
Q92253266	Cerebral ischemia-reperfusion aggravated cerebral infarction injury and possible differential genes identified by RNA-Seq in rats
Q35602188	ChIP-Seq and RNA-Seq analyses identify components of the Wnt and Fgf signaling pathways as Prep1 target genes in mouse embryonic stem cells
Q28492571	ChIP-Seq and RNA-Seq reveal an AmrZ-mediated mechanism for cyclic di-GMP synthesis and biofilm development by Pseudomonas aeruginosa
Q35557825	ChIP-seq and RNA-seq methods to study circadian control of transcription in mammals
Q31097750	Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments
Q34248192	Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data
Q47651510	Changes in fenugreek transcriptome induced by methyl jasmonate and steroid precursors revealed by RNA-Seq.
Q64109860	Characterisation of genes differentially expressed in macrophages by virulent and attenuated Mycobacterium tuberculosis through RNA-Seq analysis
Q112888805	Characterisation of the NS1-2 and NS4 proteins of murine norovirus
Q36293282	Characterisation of the transcriptome of male and female wild-type guppy brains with RNA-Seq and consequences of exposure to the pharmaceutical pollutant, 17α-ethinyl estradiol
Q89702908	Characterising a human endogenous retrovirus(HERV)-derived tumour-associated antigen: enriched RNA-Seq analysis of HERV-K(HML-2) in mantle cell lymphoma cell lines
Q112948830	Characterising the Functional and Molecular Determinants for Organ Selective Metastasis in Triple Negative Breast Cancer
Q36885193	Characteristics of cross-hybridization and cross-alignment of expression in pseudo-xenograft samples by RNA-Seq and microarrays
Q112288383	Characterization and Duodenal Transcriptome Analysis of Chinese Beef Cattle With Divergent Feed Efficiency Using RNA-Seq
Q42251093	Characterization and RNA-seq analysis of underperformer, an activation-tagged potato mutant
Q112758254	Characterization and RNA-seq transcriptomic analysis of a Scenedesmus obliqnus mutant with enhanced photosynthesis efficiency and lipid productivity
Q91629243	Characterization and analysis of the transcriptome in Gymnocypris selincuoensis on the Qinghai-Tibetan Plateau using single-molecule long-read sequencing and RNA-seq
Q104504016	Characterization and analysis of the transcriptome in Opisina arenosella from different developmental stages using single-molecule real-time transcript sequencing and RNA-seq
Q34983568	Characterization and comparative analyses of muscle transcriptomes in Dorper and small-tailed Han sheep using RNA-Seq technique
Q35051846	Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling.
Q57477507	Characterization of Critical Functions of Long Non-Coding RNAs and mRNAs in Rhabdomyosarcoma Cells and Mouse Skeletal Muscle Infected by 71 Using RNA-Seq
Q84569043	Characterization of European sea bass transcripts by RNA SEQ after oral vaccine against V. anguillarum
Q34663964	Characterization of FUS mutations in amyotrophic lateral sclerosis using RNA-Seq
Q35988695	Characterization of Glycolytic Pathway Genes Using RNA-Seq in Developing Kernels of Eucommia ulmoides.
Q90540908	Characterization of HPV integration, viral gene expression and E6E7 alternative transcripts by RNA-Seq: A descriptive study in invasive cervical cancer
Q96029164	Characterization of In Vitro Differentiation of Human Primary Keratinocytes by RNA-Seq Analysis
Q112638485	Characterization of Pyroptosis-Related Subtypes via RNA-Seq and ScRNA-Seq to Predict Chemo-Immunotherapy Response in Triple-Negative Breast Cancer
Q90727181	Characterization of epigenetic and transcriptional landscape in infantile hemangiomas with ATAC-seq and RNA-seq
Q87768706	Characterization of frataxin gene network in Friedreich's ataxia fibroblasts using the RNA-Seq technique
Q91004295	Characterization of genome-wide variations induced by gamma-ray radiation in barley using RNA-Seq
Q58129942	Characterization of kinase gene expression and splicing profile in prostate cancer with RNA-Seq data
Q49834742	Characterization of metabolic network of oxalic acid biosynthesis through RNA seq data analysis of developing spikes of finger millet (Eleusine coracana): Deciphering the role of key genes involved in oxalate formation in relation to grain calcium a
Q56985358	Characterization of peritoneal cells from cats with experimentally-induced feline infectious peritonitis (FIP) using RNA-seq
Q112291694	Characterization of the Impact of Density Gradient Centrifugation on the Profile of the Pig Sperm Transcriptome by RNA-Seq
Q85307430	Characterization of the defense transcriptome responsive to Fusarium oxysporum-infection in Arabidopsis using RNA-seq
Q33734072	Characterization of the floral transcriptome of Moso bamboo (Phyllostachys edulis) at different flowering developmental stages by transcriptome sequencing and RNA-seq analysis
Q46202055	Characterization of the growth-related transcriptome in California red abalone (Haliotis rufescens) through RNA-Seq analysis
Q35864273	Characterization of the transcriptome and gene expression of four different tissues in the ecologically relevant sea urchin Arbacia lixula using RNA-seq.
Q64019871	Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq
Q51916372	Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq.
Q52340712	Characterization of transcriptional complexity during pre-implantation development of the yak (Bos grunniens) using RNA-Seq.
Q112650729	Characterization of transcriptional landscape in bone marrow-derived mesenchymal stromal cells treated with aspirin by RNA-seq
Q89736888	Characterization of unique PMEPA1 gene splice variants (isoforms d and e) from RNA Seq profiling provides novel insights into prognostic evaluation of prostate cancer
Q36739804	Characterizing Milk Production Related Genes in Holstein Using RNA-seq
Q112727127	Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data
Q31107765	Characterizing and annotating the genome using RNA-seq data
Q42773012	Characterizing short read sequencing for gene discovery and RNA-Seq analysis in Crassostrea gigas
Q90019469	Characterizing the Role of Exoribonucleases in the Control of Microbial Gene Expression: Differential RNA-Seq
Q24607638	Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq
Q30870920	ChiTaRS 2.1--an improved database of the chimeric transcripts and RNA-seq data with novel sense-antisense chimeric RNA transcripts
Q39144538	ChiTaRS-3.1-the enhanced chimeric transcripts and RNA-seq database matched with protein-protein interactions.
Q40587035	Chicken interferome: avian interferon-stimulated genes identified by microarray and RNA-seq of primary chick embryo fibroblasts treated with a chicken type I interferon (IFN-α).
Q31152527	ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data
Q36363386	ChimeRScope: a novel alignment-free algorithm for fusion transcript prediction using paired-end RNA-Seq data
Q36073455	ChloroSeq, an Optimized Chloroplast RNA-Seq Bioinformatic Pipeline, Reveals Remodeling of the Organellar Transcriptome Under Heat Stress.
Q93009337	Choice of library size normalization and statistical methods for differential gene expression analysis in balanced two-group comparisons for RNA-seq studies
Q87573465	Choosing between RT-qPCR and RNA-seq: a back-of-the-envelope estimate towards the definition of the break-even-point
Q89629210	Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq
Q90613156	Chronic Oxycodone Self-administration Altered Reward-related Genes in the Ventral and Dorsal Striatum of C57BL/6J Mice: An RNA-seq Analysis
Q55414732	CirComPara: A Multi-Method Comparative Bioinformatics Pipeline to Detect and Study circRNAs from RNA-seq Data.
Q88157044	Circular RNA expression profile analysis of severe acne by RNA-Seq and bioinformatics
Q112299289	Circular RNA expression profiles and features in NAFLD mice: a study using RNA-seq data
Q42276860	Circular RNA expression profiles and features in human tissues: a study using RNA-seq data
Q35938089	Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology
Q112080896	Class III Peroxidases in Response to Multiple Abiotic Stresses in Pyrenean Populations
Q41483480	Claudin multigene family in channel catfish and their expression profiles in response to bacterial infection and hypoxia as revealed by meta-analysis of RNA-Seq datasets
Q89538442	Clinical Significance and Effect of MTDH/AEG-I in Bladder Urothelial Cancer: A Study Based on Immunohistochemistry, RNA-Seq, and in vitro Verification [Retraction]
Q47193804	Clinical role and biological function of CDK5 in hepatocellular carcinoma: A study based on immunohistochemistry, RNA-seq and in vitro investigation
Q60302022	Clinical significance and effect of MTDH/AEG-1 in bladder urothelial cancer: a study based on immunohistochemistry, RNA-seq, and in vitro verification
Q52649592	Clinical significances of p27 in digestive tract cancers: a comprehensive analysis on immunohistochemistry staining, published literatures, microarray and RNA-seq data.
Q92645527	Clinicopathological significance of ribosomal protein S6 kinase A6 in lung squamous cell carcinoma: an immunohistochemical and RNA-seq study
Q57073246	Clinker: visualizing fusion genes detected in RNA-seq data
Q31149875	Cluster analysis of Plasmodium RNA-seq time-course data identifies stage-specific co-regulated biological processes and regulatory elements
Q91721714	Cluster analysis on high dimensional RNA-seq data with applications to cancer research - An evaluation study
Q38640146	Clustering of RNA-Seq samples: Comparison study on cancer data
Q97566652	Co-Expression Networks for Causal Gene Identification Based on RNA-Seq Data of Corynebacterium pseudotuberculosis
Q30993174	Co-LncRNA: investigating the lncRNA combinatorial effects in GO annotations and KEGG pathways based on human RNA-Seq data
Q92371782	CoCo: RNA-seq read assignment correction for nested genes and multimapped reads
Q42776010	Cochlear Transcriptome Following Acoustic Trauma and Dexamethasone Administration Identified by a Combination of RNA-seq and DNA Microarray
Q35186778	CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts.
Q30684148	Codon usage patterns in Chinese bayberry (Myrica rubra) based on RNA-Seq data
Q35554615	Columnar apple primary roots share some features of the columnar-specific gene expression profile of aerial plant parts as evidenced by RNA-Seq analysis
Q100440303	ComBat-seq: batch effect adjustment for RNA-seq count data
Q47128015	Combination of iTRAQ proteomics and RNA-seq transcriptomics reveals multiple levels of regulation in phytoplasma-infected Ziziphus jujuba Mill
Q58797653	Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken
Q91986787	Combined QTL mapping and RNA-Seq profiling reveals candidate genes associated with cadmium tolerance in barley
Q112281937	Combined RNA-seq and Phenotype Analysis Reveals a Potential Molecular Mechanism of the Difference in Grain Size of Naked Barley From the Qinghai-Tibetan Plateau
Q59125184	Combined RNA-seq and RAT-seq mapping of long noncoding RNAs in pluripotent reprogramming
Q35586785	Combining GWAS and RNA-Seq Approaches for Detection of the Causal Mutation for Hereditary Junctional Epidermolysis Bullosa in Sheep
Q112644566	Combining Genome-Wide Gene Expression Analysis (RNA-seq) and a Gene Editing Platform (CRISPR-Cas9) to Uncover the Selectively Pro-oxidant Activity of Aurone Compounds Against Candida albicans
Q35875617	Combining RNA-seq and proteomic profiling to identify seminal fluid proteins in the migratory grasshopper Melanoplus sanguinipes (F).
Q54959556	Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi.
Q36201224	Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
Q34422824	Combining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development
Q49622250	Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo.
Q113863362	Combining phenotypic profiling and targeted RNA-Seq reveals linkages between transcriptional perturbations and chemical effects on cell morphology: Retinoic acid as an example
Q42368547	Commentary on: "Effect of sevoflurane anesthesia on the comprehensive mRNA expression profile of the mouse hippocampus": Postoperative nausea and vomiting conundrum: RNA-seq to the rescue.
Q37651176	Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies
Q30842579	Comparative Analysis of Glycogene Expression in Different Mouse Tissues Using RNA-Seq Data
Q92757268	Comparative Analysis of the Liver Transcriptome among Cattle Breeds Using RNA-seq
Q28817094	Comparative Characterization of the Leaf Tissue of Physalis alkekengi and Physalis peruviana Using RNA-seq and Metabolite Profiling
Q58131163	Comparative De Novo Transcriptome Assembly of RNA-seq Data using Two Commercial Software Programs
Q35815210	Comparative RNA seq analysis of the New Zealand glowworm Arachnocampa luminosa reveals bioluminescence-related genes
Q35962414	Comparative RNA-Seq Analysis Reveals That Regulatory Network of Maize Root Development Controls the Expression of Genes in Response to N Stress
Q39625549	Comparative RNA-Seq Analysis Uncovers a Complex Regulatory Network for Soybean Cyst Nematode Resistance in Wild Soybean (Glycine soja).
Q89584740	Comparative RNA-Seq Analysis of Differentially Expressed Genes in the Epididymides of Yak and Cattleyak
Q57294528	Comparative RNA-Seq Analysis of High- and Low-Oil Yellow Horn During Embryonic Development
Q112295947	Comparative RNA-Seq Transcriptome Analysis on Pulmonary Inflammation in a Mouse Model of Asthma-COPD Overlap Syndrome
Q96770736	Comparative RNA-Seq analyses of Drosophila plasmatocytes reveal gene specific signatures in response to clean injury and septic injury
Q38437087	Comparative RNA-Seq analysis of differentially expressed genes in the testis and ovary of Takifugu rubripes
Q102054324	Comparative RNA-Seq analysis of the root revealed transcriptional regulation system for aluminum tolerance in contrasting indica rice of North East India
Q58755883	Comparative RNA-Seq analysis on the regulation of cucumber sex differentiation under different ratios of blue and red light
Q58736410	Comparative RNA-Seq analysis reveals a critical role for brassinosteroids in rose (Rosa hybrida) petal defense against Botrytis cinerea infection
Q113860982	Comparative RNA-Seq analysis reveals insights in Salmonella disease resistance of chicken; and database development as resource for gene expression in poultry
Q35129174	Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles
Q112298808	Comparative RNA-Seq analysis unfolds a complex regulatory network imparting yellow mosaic disease resistance in mungbean [Vigna radiata (L.) R. Wilczek]
Q30455450	Comparative RNA-Seq and microarray analysis of gene expression changes in B-cell lymphomas of Canis familiaris.
Q34510113	Comparative RNA-Seq based dissection of the regulatory networks and environmental stimuli underlying Vibrio parahaemolyticus gene expression during infection
Q96576253	Comparative RNA-Seq profiling of a resistant and susceptible peanut (Arachis hypogaea) genotypes in response to leaf rust infection caused by Puccinia arachidis
Q36160699	Comparative RNA-Seq profiling of berry development between table grape 'Kyoho' and its early-ripening mutant 'Fengzao'.
Q38921141	Comparative RNA-Seq transcriptome analyses reveal distinct metabolic pathways in diabetic nerve and kidney disease.
Q96950183	Comparative RNA-Seq transcriptome analyses reveal dynamic time-dependent effects of 56Fe, 16O, and 28Si irradiation on the induction of murine hepatocellular carcinoma
Q47655004	Comparative RNA-Seq transcriptome analysis on silica induced pulmonary inflammation and fibrosis in mice silicosis model
Q90909955	Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor
Q34625297	Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema.
Q34559222	Comparative RNA-seq analysis of early-infected peach leaves by the invasive phytopathogen Xanthomonas arboricola pv. pruni
Q89305794	Comparative RNA-seq analysis of nickel hyperaccumulating and non-accumulating populations of Senecio coronatus (Asteraceae)
Q35757986	Comparative RNA-seq analysis of the Tritrichomonas foetus PIG30/1 isolate from pigs reveals close association with Tritrichomonas foetus BP-4 isolate 'bovine genotype'.
Q90004826	Comparative RNA-seq analysis of the drought-sensitive lentil (Lens culinaris) root and leaf under short- and long-term water deficits
Q37658074	Comparative RNA-seq analysis of transcriptome dynamics during petal development in Rosa chinensis
Q91866538	Comparative RNA-seq analysis reveals dys-regulation of major canonical pathways in ERG-inducible LNCaP cell progression model of prostate cancer
Q39099058	Comparative RNA-seq analysis reveals potential mechanisms mediating the conversion to androgen independence in an LNCaP progression cell model
Q38659653	Comparative RNA-seq based transcriptome profiling of waterlogging response in cucumber hypocotyls reveals novel insights into the de novo adventitious root primordia initiation
Q36254288	Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape
Q38367604	Comparative RNA-seq-Based Transcriptome Analysis of the Virulence Characteristics of Methicillin-Resistant and -Susceptible Staphylococcus pseudintermedius Strains Isolated from Small Animals.
Q94566610	Comparative Transcriptome Analysis Combining SMRT- and Illumina-Based RNA-Seq Identifies Potential Candidate Genes Involved in Betalain Biosynthesis in Pitaya Fruit
Q42011133	Comparative Transcriptome Analysis of Chinary, Assamica and Cambod tea (Camellia sinensis) Types during Development and Seasonal Variation using RNA-seq Technology
Q108590589	Comparative Transcriptome Analysis of Two Aegilops tauschii with Contrasting Drought Tolerance by RNA-Seq
Q112728044	Comparative Transcriptome Profile Analysis of Longissimus dorsi Muscle Tissues From Two Goat Breeds With Different Meat Production Performance Using RNA-Seq
Q100942180	Comparative Transcriptome Profiling of Skeletal Muscle from Black Muscovy Duck at Different Growth Stages Using RNA-seq
Q38445427	Comparative Transcriptomic Analyses by RNA-seq to Elucidate Differentially Expressed Genes in the Muscle of Korean Thoroughbred Horses
Q31053990	Comparative Validation of Conventional and RNA-Seq Data-Derived Reference Genes for qPCR Expression Studies of Colletotrichum kahawae
Q33966703	Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).
Q31157565	Comparative analysis of RNA-Seq data from brain and blood samples of Parkinson's disease
Q34157419	Comparative analysis of different label-free mass spectrometry based protein abundance estimates and their correlation with RNA-Seq gene expression data
Q64065594	Comparative analysis of differentially expressed genes between the ovaries from pregnant and nonpregnant goats using RNA-Seq
Q34091481	Comparative analysis of human protein-coding and noncoding RNAs between brain and 10 mixed cell lines by RNA-Seq.
Q91272790	Comparative analysis of microsatellite, SNP, and InDel markers in four Rhododendron species based on RNA-seq
Q28829486	Comparative analysis of the terpenoid biosynthesis pathway in Azadirachta indica and Melia azedarach by RNA-seq
Q92539957	Comparative analysis on the expression of L1 loci using various RNA-Seq preparations
Q30982079	Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data
Q30277371	Comparative assessment of methods for the fusion transcripts detection from RNA-Seq data
Q59808051	Comparative assessment shows the reliability of chloroplast genome assembly using RNA-seq
Q90149603	Comparative evaluation of RNA-Seq library preparation methods for strand-specificity and low input
Q57467524	Comparative evaluation of cDNA library construction approaches for RNA-Seq analysis from low RNA-content human specimens
Q30874439	Comparative evaluation of gene set analysis approaches for RNA-Seq data.
Q33726896	Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms
Q55286535	Comparative liver transcriptome analysis in ducklings infected with duck hepatitis A virus 3 (DHAV-3) at 12 and 48 hours post-infection through RNA-seq.
Q37677337	Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis.
Q30699743	Comparative studies of differential gene calling using RNA-Seq data
Q34325821	Comparative study of RNA-seq- and microarray-derived coexpression networks in Arabidopsis thaliana.
Q34326836	Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq
Q34412588	Comparative transcriptome analyses of deltamethrin-resistant and -susceptible Anopheles gambiae mosquitoes from Kenya by RNA-Seq
Q36520569	Comparative transcriptome analyses of deltamethrin-susceptible and -resistant Culex pipiens pallens by RNA-seq
Q38431222	Comparative transcriptome analysis of flower heterosis in two soybean F1 hybrids by RNA-seq.
Q34079894	Comparative transcriptome analysis of leaves and roots in response to sudden increase in salinity in Brassica napus by RNA-seq
Q38464792	Comparative transcriptome analysis of the petal degeneration mutant pdm in Chinese cabbage (Brassica campestris ssp. pekinensis) using RNA-Seq
Q93162916	Comparative transcriptome analysis of transcultured human skin-derived precursors (tSKPs) from adherent monolayer culture system and tSKPs-derived fibroblasts (tFBs) by RNA-Seq
Q57635184	Comparative transcriptome profiling of the human and mouse dorsal root ganglia: an RNA-seq-based resource for pain and sensory neuroscience research
Q38476188	Comparative transcriptomic analysis by RNA-seq to discern differential expression of genes in liver and muscle tissues of adult Berkshire and Jeju Native Pig.
Q33767596	Comparative transcriptomic analysis of Gardnerella vaginalis biofilms vs. planktonic cultures using RNA-seq
Q47739187	Comparative transcriptomic analysis of skeletal muscle tissue during prenatal stages in Tongcheng and Yorkshire pig using RNA-seq
Q39202850	Comparative transcriptomic analysis of the heat stress response in the filamentous fungus Metarhizium anisopliae using RNA-Seq
Q42775260	Comparative transcriptomic analysis to identify differentially expressed genes in fat tissue of adult Berkshire and Jeju Native Pig using RNA-seq
Q97586595	Comparative transcriptomics analysis revealing flower trichome development during flower development in two Lonicera japonica Thunb. cultivars using RNA-seq
Q57629206	Comparing Bowtie and BWA to Align Short Reads from a RNA-Seq Experiment
Q59340479	Comparing RNA-Seq and microarray gene expression data in two zones of the root apex relevant to spaceflight
Q34434633	Comparing bioinformatic gene expression profiling methods: microarray and RNA-Seq
Q101237946	Comparing in vitro human liver models to in vivo human liver using RNA-Seq
Q30835470	Comparing reference-based RNA-Seq mapping methods for non-human primate data.
Q31012573	Comparing the normalization methods for the differential analysis of Illumina high-throughput RNA-Seq data
Q33610866	Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays
Q34154419	Comparison between Normalised and Unnormalised 454-Sequencing Libraries for Small-Scale RNA-Seq Studies.
Q38703670	Comparison of Alternative Splicing Junction Detection Tools Using RNA-Seq Data
Q35133686	Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing
Q33839404	Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data
Q114029740	Comparison of Gene Expression Changes in Three Wheat Varieties with Different Susceptibilities to Heat Stress Using RNA-Seq Analysis
Q52366158	Comparison of Gene Expression Profiles in Nonmodel Eukaryotic Organisms with RNA-Seq.
Q98620427	Comparison of Poly-A+ Selection and rRNA Depletion in Detection of lncRNA in Two Equine Tissues Using RNA-seq
Q90525088	Comparison of RNA isolation methods on RNA-Seq: implications for differential expression and meta-analyses
Q61811634	Comparison of RNA-Seq and Microarray Gene Expression Platforms for the Toxicogenomic Evaluation of Liver From Short-Term Rat Toxicity Studies
Q34399620	Comparison of RNA-Seq and microarray in transcriptome profiling of activated T cells
Q33805247	Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling
Q58698506	Comparison of RNA-seq and microarray platforms for splice event detection using a cross-platform algorithm
Q35863265	Comparison of RNA-seq and microarray-based models for clinical endpoint prediction
Q38632422	Comparison of alternative approaches for analysing multi-level RNA-seq data.
Q38953942	Comparison of microarray and RNA-Seq analysis of mRNA expression in dermal mesenchymal stem cells
Q34382743	Comparison of microarrays and RNA-seq for gene expression analyses of dose-response experiments
Q31035102	Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster
Q40460419	Comparison of normalization methods for differential gene expression analysis in RNA-Seq experiments: A matter of relative size of studied transcriptomes.
Q92803803	Comparison of quantitative trait loci methods: Total expression and allelic imbalance method in brain RNA-seq
Q41816553	Comparison of software packages for detecting differential expression in RNA-seq studies
Q35763080	Comparison of stranded and non-stranded RNA-seq transcriptome profiling and investigation of gene overlap
Q54286125	Comparison of the gene expression profiles between smokers with and without lung cancer using RNA-Seq.
Q92730035	Comparison of the myometrial transcriptome from singleton and twin pregnancies by RNA-Seq
Q35125556	Comparison of the transcriptomes of mouse skin derived precursors (SKPs) and SKP-derived fibroblasts (SFBs) by RNA-Seq
Q37708173	Comparison of transcriptional profiles of Clostridium thermocellum grown on cellobiose and pretreated yellow poplar using RNA-Seq
Q42773423	Comparison of transcriptomes of wild-type and isothiazolone-resistant Pseudomonas aeruginosa by using RNA-seq
Q33774684	Comparison of transcriptomic landscapes of bovine embryos using RNA-Seq
Q90442744	Comparison of transcriptomic landscapes of different lamb muscles using RNA-Seq
Q34740039	Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems
Q30882415	Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data
Q39405214	Complementarity of SOMAscan to LC-MS/MS and RNA-seq for quantitative profiling of human embryonic and mesenchymal stem cells
Q42774032	Complementary iTRAQ proteomics and RNA-seq transcriptomics reveal multiple levels of regulation in response to nitrogen starvation in Synechocystis sp. PCC 6803.
Q93521371	Complete RNA-seq analysis of cancer transcriptomes from FFPE samples
Q36180848	Complete Transcriptome RNA-Seq
Q33854859	Composite transcriptome assembly of RNA-seq data in a sheep model for delayed bone healing
Q61815100	Comprehensive Analysis of Differentially Expressed Unigenes under NaCl Stress in Flax ( L.) Using RNA-Seq
Q100746594	Comprehensive Analysis of RNA-Seq Gene Expression Profiling of Brain Transcriptomes Reveals Novel Genes, Regulators, and Pathways in Autism Spectrum Disorder
Q112279811	Comprehensive Analysis of RNA-Seq in Endometriosis Reveals Competing Endogenous RNA Network Composed of circRNA, lncRNA and mRNA
Q26752996	Comprehensive Assessments of RNA-seq by the SEQC Consortium: FDA-Led Efforts Advance Precision Medicine
Q110597252	Comprehensive Comparison of RNA-Seq Data of SARS-CoV-2, SARS-CoV and MERS-CoV Infections: Alternative Entry Routes and Innate Immune Responses
Q91786147	Comprehensive Gene Expression Analysis in NMIBC Using RNA-seq Reveals New Therapy Strategies
Q30999014	Comprehensive Identification of Sexual Dimorphism-Associated Differentially Expressed Genes in Two-Way Factorial Designed RNA-Seq Data on Japanese Quail (Coturnix coturnix japonica).
Q112713182	Comprehensive Mapping of the Cell Response to Borrelia bavariensis in the Brain Microvascular Endothelial Cells in vitro Using RNA-Seq
Q112295491	Comprehensive RNA-Seq Analysis of Potential Therapeutic Targets of Gan-Dou-Fu-Mu Decoction for Treatment of Wilson Disease Using a Toxic Milk Mouse Model
Q36030686	Comprehensive RNA-Seq Analysis on the Regulation of Tomato Ripening by Exogenous Auxin
Q90837244	Comprehensive RNA-Seq Data Analysis Identifies Key mRNAs and lncRNAs in Atrial Fibrillation
Q36247786	Comprehensive RNA-Seq Profiling to Evaluate the Sheep Mammary Gland Transcriptome in Response to Experimental Mycoplasma agalactiae Infection
Q91640002	Comprehensive RNA-Seq analysis of notochord-enriched genes induced during Xenopus tropicalis tail resorption
Q35048508	Comprehensive RNA-Seq expression analysis of sensory ganglia with a focus on ion channels and GPCRs in Trigeminal ganglia
Q96155572	Comprehensive RNA-Seq profiling of the lung transcriptome of Argali hybrid sheep in response to experimental Mycoplasma ovipneumoniae infection
Q97437333	Comprehensive RNA-Seq profiling of the lung transcriptome of Bashbay sheep in response to experimental Mycoplasma ovipneumoniae infection
Q39632589	Comprehensive RNA-Seq profiling to evaluate lactating sheep mammary gland transcriptome
Q35239284	Comprehensive RNA-Seq transcriptomic profiling across 11 organs, 4 ages, and 2 sexes of Fischer 344 rats
Q100305412	Comprehensive RNA-seq analysis revealed molecular pathways and genes associated with drought tolerance in Wild Soybean (Glycine soja Sieb. & Zucc.).
Q37698352	Comprehensive RNA-seq transcriptomic profiling in the malignant progression of gliomas
Q36127799	Comprehensive Small RNA-Seq of Adeno-Associated Virus (AAV)-Infected Human Cells Detects Patterns of Novel, Non-Coding AAV RNAs in the Absence of Cellular miRNA Regulation
Q34156814	Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome
Q30671582	Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa
Q34105132	Comprehensive analysis of alternative splicing in Digitalis purpurea by strand-specific RNA-Seq
Q92712427	Comprehensive analysis of circRNAs from cashmere goat skin by next generation RNA sequencing (RNA-seq)
Q30886482	Comprehensive analysis of small RNA-seq data reveals that combination of miRNA with its isomiRs increase the accuracy of target prediction in Arabidopsis thaliana
Q35194274	Comprehensive analysis of the whole transcriptomes from two different pig breeds using RNA-Seq method.
Q34153658	Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq
Q30985845	Comprehensive assembly of novel transcripts from unmapped human RNA-Seq data and their association with cancer
Q34484795	Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress.
Q59792413	Comprehensive evaluation of RNA-seq analysis pipelines in diploid and polyploid species
Q36329507	Comprehensive evaluation of RNA-seq quantification methods for linearity
Q34369969	Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
Q31026263	Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data.
Q55041956	Comprehensive gene expression analysis of canine invasive urothelial bladder carcinoma by RNA-Seq.
Q45871639	Comprehensive genomic profiling of the lung transcriptome in emphysema and idiopathic pulmonary fibrosis using RNA-Seq
Q35906565	Comprehensive identification of sexually dimorphic genes in diverse cattle tissues using RNA-seq
Q89535886	Comprehensive molecular insights into the stress response dynamics of rice (Oryza sativa L.) during rice tungro disease by RNA-seq-based comparative whole transcriptome analysis
Q35206638	Comprehensive molecular screening: from the RT-PCR to the RNA-seq
Q90237080	Comprehensive multi-center assessment of small RNA-seq methods for quantitative miRNA profiling
Q101564312	Comprehensive profiling of extracellular RNA in HPV-induced cancers using an improved pipeline for small RNA-seq analysis
Q33999125	Computation for ChIP-seq and RNA-seq studies
Q89484464	Computational Analysis of RNA-Seq Data from Airway Epithelial Cells for Studying Lung Disease
Q93176115	Computational Identification of RNA-Seq Based miRNA-Mediated Prognostic Modules in Cancer
Q31143159	Computational Identification of Tissue-Specific Splicing Regulatory Elements in Human Genes from RNA-Seq Data
Q43985720	Computational analysis of RNA-seq
Q28686251	Computational analysis of bacterial RNA-Seq data
Q55023730	Computational identification and validation of alternative splicing in ZSF1 rat RNA-seq data, a preclinical model for type 2 diabetic nephropathy.
Q95377662	Computational identification of specific splicing regulatory elements from RNA-seq in lung cancer
Q34401343	Computational identification of tissue-specific alternative splicing elements in mouse genes from RNA-Seq
Q104493055	Computational methods for annotation of plant regulatory non-coding RNAs using RNA-seq
Q34660508	Computational methods for transcriptome annotation and quantification using RNA-seq
Q33866899	Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data
Q30515384	Confirmation of an epilepsy modifier locus on mouse chromosome 11 and candidate gene analysis by RNA-Seq
Q64095632	Conjugated linoleic acid (CLA)-induced milk fat depression: application of RNA-Seq technology to elucidate mammary gene regulation in dairy ewes
Q28534334	Connectivity Mapping for Candidate Therapeutics Identification Using Next Generation Sequencing RNA-Seq Data
Q36007231	Conserved Senescence Associated Genes and Pathways in Primary Human Fibroblasts Detected by RNA-Seq
Q41463548	Considerations for RNA-seq analysis of circadian rhythms
Q38646016	Construction and Optimization of a Large Gene Coexpression Network in Maize Using RNA-Seq Data.
Q92735370	Construction and analysis of an interologous protein-protein interaction network of Camellia sinensis leaf (TeaLIPIN) from RNA-Seq data sets
Q34270061	Construction of RNA-Seq libraries from large and microscopic tissues for the Illumina sequencing platform
Q35411360	Construction of Trypanosoma brucei Illumina RNA-Seq libraries enriched for transcript ends
Q47135629	Construction of a High-Density Genetic Map from RNA-Seq Data for an Arabidopsis Bay-0 × Shahdara RIL Population.
Q92237115	Construction of competing endogenous RNA networks from paired RNA-seq data sets by pointwise mutual information
Q24620728	Construction of normalized RNA-seq libraries for next-generation sequencing using the crab duplex-specific nuclease
Q112290533	Construction of transcriptional regulatory networks using total RNA-seq data
Q101215744	Container-aided integrative QTL and RNA-seq analysis of Collaborative Cross mice supports distinct sex-oriented molecular modes of response in obesity
Q35619360	ContextMap 2: fast and accurate context-based RNA-seq mapping
Q123004901	Contribution of the Immune Response in the Ileum to the Development of Diarrhoea caused by Helminth Infection: Studies with the Sheep Model
Q102326415	Contributions of RNA-seq to improve in vitro embryo production (IVP)
Q91231630	Coordinated RNA-Seq and peptidomics identify neuropeptides and G-protein coupled receptors (GPCRs) in the large pine weevil Hylobius abietis, a major forestry pest
Q60300408	Corn ChIPs and RNA-seq: Researchers Dip into Advanced Tools and Resources to Examine bZIP Transcription Factor Function in the Maize Endosperm
Q104132944	Correction to: Characterising a human endogenous retrovirus(HERV)-derived tumour-associated antigen: enriched RNA-Seq analysis of HERV-K(HML-2) in mantle cell lymphoma cell lines
Q55003943	Correction to: Dual RNA-seq reveals viral infections in asthmatic children without respiratory illness which are associated with changes in the airway transcriptome.
Q92260680	Correction to: Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data
Q60614318	Correction: A Global View of Transcriptome Dynamics during Sporisorium scitamineum Challenge in Sugarcane by RNA-seq
Q45904701	Correction: A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq.
Q42398598	Correction: A RNA-Seq Analysis of the Rat Supraoptic Nucleus Transcriptome: Effects of Salt Loading on Gene Expression
Q90922832	Correction: A comparative study of RNA-Seq and microarray data analysis on the two examples of rectal-cancer patients and Burkitt Lymphoma cells
Q42343519	Correction: De novo Transcriptome Analysis of Portunus trituberculatus Ovary and Testis by RNA-Seq: Identification of Genes Involved in Gonadal Development
Q97678041	Correction: Effect of bovine leukemia virus (BLV) infection on bovine mammary epithelial cells RNA-seq transcriptome profile
Q59811573	Correction: From Glacier to Sauna: RNA-Seq of the Human Pathogen Black Fungus Exophiala dermatitidis under Varying Temperature Conditions Exhibits Common and Novel Fungal Response
Q60555448	Correction: HLA Haplotyping from RNA-seq Data Using Hierarchical Read Weighting
Q98394618	Correction: Identification and replication of RNA-Seq gene network modules associated with depression severity
Q46210576	Correction: Identification of Immunity-Related Genes in Ostrinia furnacalis against Entomopathogenic Fungi by RNA-Seq Analysis
Q42388321	Correction: Identification of microRNAs in Macaca fascicularis (Cynomolgus Monkey) by Homology Search and Experimental Validation by Small RNA-Seq and RT-qPCR Using Kidney Cortex Tissues
Q60552838	Correction: RNA-Seq Analysis of Transcriptome and Glucosinolate Metabolism in Seeds and Sprouts of Broccoli (Brassica oleracea var. italic)
Q55175743	Correction: RNA-Seq Analysis of the Sclerotinia homoeocarpa – Creeping Bentgrass Pathosystem.
Q94014940	Correction: RNA-Seq Reveals Dynamic Changes of Gene Expression in Key Stages of Intestine Regeneration in the Sea Cucumber
Q55448898	Correction: RNA-Seq Reveals Infection-Related Gene Expression Changes in Phytophthora capsici.
Q42427346	Correction: RNA-Seq Reveals the Angiogenesis Diversity between the Fetal and Adults Bone Mesenchyme Stem Cell
Q45808251	Correction: RNA-Seq-Based Analysis of the Physiologic Cold Shock-Induced Changes in Moraxella catarrhalis Gene Expression
Q60629187	Correction: RNA-seq Analysis of Host and Viral Gene Expression Highlights Interaction between Varicella Zoster Virus and Keratinocyte Differentiation
Q93013813	Correction: RNA-seq transcriptome analysis of the immature seeds of two Brassica napus lines with extremely different thousand-seed weight to identify the candidate genes related to seed weight
Q60556215	Correction: RNAbrowse: RNA-Seq De Novo Assembly Results Browser
Q42695483	Correction: Reprogramming of Yersinia from virulent to persistent mode revealed by complex in vivo RNA-seq analysis
Q42345960	Correction: Visualizing the structure of RNA-seq expression data using grade of membership models
Q104129648	Corrections to "IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads"
Q38666530	Correlation between RNA-Seq and microarrays results using TCGA data.
Q97691124	Corrigendum to 'Identification of a RNA-seq-based signature to improve prognostics for uterine sarcoma' [Gynecologic Oncology 155 (2019) 499-507]
Q39064090	Corrigendum: A genome-wide search for epigenetically regulated genes in zebra finch using MethylCap-seq and RNA-seq.
Q55709093	Corrigendum: Differential expression analysis of RNA-seq data at single-base resolution.
Q55474568	Corrigendum: Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data.
Q60520616	Corrigendum: Nuclear RNA-seq of single neurons reveals molecular signatures of activation
Q42075759	Corrigendum: Nuclear RNA-seq of single neurons reveals molecular signatures of activation.
Q44169914	Corrigendum: RNA-Seq Comparison of Larval and Adult Malpighian Tubules of the Yellow Fever Mosquito Aedes aegypti Reveals Life Stage-Specific Changes in Renal Function
Q42353263	Corrigendum: Transcriptomic Identification of Drought-Related Genes and SSR Markers in Sudan Grass Based on RNA-Seq
Q31033909	Corynebacterium pseudotuberculosis RNA-seq data from abiotic stresses.
Q30962063	Cosplicing network analysis of mammalian brain RNA-Seq data utilizing WGCNA and Mantel correlations
Q47745075	Coupling Seq-BSA and RNA-Seq Analyses Reveal the Molecular Pathway and Genes Associated with Heading Type in Chinese Cabbage
Q112729973	Covering all your bases: incorporating intron signal from RNA-seq data
Q91570772	CpG methyl-seq and RNA-seq epigenomic and transcriptomic studies on the preventive effects of Moringa isothiocyanate in mouse epidermal JB6 cells induced by the tumor promoter TPA
Q21563370	Critical evaluation of imprinted gene expression by RNA-Seq: a new perspective
Q31141780	Critical genes of hepatocellular carcinoma revealed by network and module analysis of RNA-seq data
Q100726513	Cross-Species RNA-Seq Study Comparing Transcriptomes of Enriched Osteocyte Populations in the Tibia and Skull
Q31042976	Cross-platform normalization of microarray and RNA-seq data for machine learning applications
Q35066523	Cross-platform ultradeep transcriptomic profiling of human reference RNA samples by RNA-Seq
Q91782808	Current RNA-seq methodology reporting limits reproducibility
Q90778864	Curse: building expression atlases and co-expression networks from public RNA-Seq data
Q57023154	Cytometry meets next-generation sequencing - RNA-Seq of sorted subpopulations reveals regional replication and iron-triggered prophage induction in Corynebacterium glutamicum
Q42696542	DART - a fast and accurate RNA-seq mapper with a partitioning strategy
Q47141399	DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Q38271640	DEB: A web interface for RNA-seq digital gene expression analysis
Q111519186	DEGnext: classification of differentially expressed genes from RNA-seq data using a convolutional neural network with transfer learning
Q33512293	DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
Q31037319	DETECTION OF BACTERIAL SMALL TRANSCRIPTS FROM RNA-SEQ DATA: A COMPARATIVE ASSESSMENT.
Q92230811	DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research
Q34372165	DEXUS: identifying differential expression in RNA-Seq studies with unknown conditions
Q39472416	DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq experiments
Q34530091	DFI: gene feature discovery in RNA-seq experiments from multiple sources
Q94332187	DIPG-32. COMBINATION OF ChIP-SEQ AND RNA-SEQ ANALYSIS FOR TARGET DISCOVERY REVEAL PROMISING CANDIDATES FOR VALIDATION
Q93580755	DNA Sequencing Research Group (DSRG): Evaluation of RNA Amplification Kits at Subnanogram Input Amounts of Total RNA for RNA-Seq
Q60048475	DREAMSeq: An Improved Method for Analyzing Differentially Expressed Genes in RNA-seq Data
Q112562637	DVGfinder: A Metasearch Tool for Identifying Defective Viral Genomes in RNA-Seq Data
Q47316922	DaMiRseq-an R/Bioconductor package for data mining of RNA-Seq data: normalization, feature selection and classification
Q36887343	Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
Q42325734	Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
Q112641635	Dashboard-style interactive plots for RNA-seq analysis are R Markdown ready with Glimma 2.0.
Q42777671	Data Analysis Pipeline for RNA-seq Experiments: From Differential Expression to Cryptic Splicing.
Q52678057	Data Mining of Small RNA-Seq Suggests an Association Between Prostate Cancer and Altered Abundance of 5' Transfer RNA Halves in Seminal Fluid and Prostatic Tissues.
Q92983143	Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis
Q100929757	Data of correlation analysis between the density of H3K4me3 in promoters of genes and gene expression: Data from RNA-seq and ChIP-seq analyses of the murine prefrontal cortex
Q45993775	Data on RNA-seq analysis of Garcinia mangostana L. seed development.
Q104578636	Data on RNA-seq analysis of the cocoa pod borer pest Conopomorpha cramerella (Snellen) (Lepidoptera: Gracillariidae)
Q30981058	Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package
Q95652365	Data-based RNA-seq simulations by binomial thinning
Q28603939	De Novo Assembly of Coding Sequences of the Mangrove Palm (Nypa fruticans) Using RNA-Seq and Discovery of Whole-Genome Duplications in the Ancestor of Palms
Q35692384	De Novo Characterization of the Mung Bean Transcriptome and Transcriptomic Analysis of Adventitious Rooting in Seedlings Using RNA-Seq.
Q92837016	De Novo Plant Transcriptome Assembly and Annotation Using Illumina RNA-Seq Reads
Q92654554	De Novo RNA-seq and Functional Annotation of Haemaphysalis longicornis
Q35946083	De Novo Transcriptome Analysis of Medicinally Important Plantago ovata Using RNA-Seq
Q103770767	De novo RNA-Seq analysis in sensitive rice cultivar and comparative transcript profiling in contrasting genotypes reveal genetic biomarkers for fluoride-stress response
Q35327033	De novo RNA-Seq analysis of the venus clam, Cyclina sinensis, and the identification of immune-related genes
Q35964291	De novo RNA-Seq and functional annotation of Sarcoptes scabiei canis
Q47298501	De novo RNA-Seq based transcriptome analysis of Papiliotrema laurentii strain RY1 under nitrogen starvation
Q88945957	De novo RNA-seq and functional annotation of Ornithonyssus bacoti
Q30388612	De novo Transcriptome Analysis of Portunus trituberculatus Ovary and Testis by RNA-Seq: Identification of Genes Involved in Gonadal Development
Q33714197	De novo assembly and analysis of RNA-seq data.
Q35746818	De novo assembly and characterisation of the field pea transcriptome using RNA-Seq
Q38466455	De novo assembly and characterization of Oryza officinalis leaf transcriptome by using RNA-seq
Q37542584	De novo assembly and characterization of Sophora japonica transcriptome using RNA-seq.
Q30884266	De novo assembly of bacterial transcriptomes from RNA-seq data
Q30830052	De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification
Q91903681	De novo assembly of the Platycladus orientalis (L.) Franco transcriptome provides insight into the development and pollination mechanism of female cone based on RNA-Seq data
Q30878628	De novo assembly of the desert tree Haloxylon ammodendron (C. A. Mey.) based on RNA-Seq data provides insight into drought response, gene discovery and marker identification
Q42084277	De novo assembly of the perennial ryegrass transcriptome using an RNA-Seq strategy.
Q29615950	De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Q88494016	De novo transcriptome analysis and differentially expressed genes in the ovary and testis of the Japanese mantis shrimp Oratosquilla oratoria by RNA-Seq
Q50099503	De novo transcriptome analysis of Bagarius yarrelli (Siluriformes: Sisoridae) and the search for potential SSR markers using RNA-Seq.
Q33732257	De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers
Q38456021	De novo transcriptome analysis of Inonotus baumii by RNA-seq
Q38464074	De novo transcriptome analysis of mulberry (Morus L.) under drought stress using RNA-seq technology
Q107562102	De novo transcriptome analysis of white teak (Gmelina arborea Roxb) wood reveals critical genes involved in xylem development and secondary metabolism
Q38627585	De novo transcriptome assembly and RNA-Seq expression analysis in blood from beluga whales of Bristol Bay, AK.
Q39415561	De novo transcriptome assembly of RNA-Seq reads with different strategies
Q64057612	De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers
Q34375457	De novo transcriptome of the desert beetle Microdera punctipennis (Coleoptera: Tenebrionidae) using Illumina RNA-seq technology
Q30993080	De novo transcriptome sequencing in Anopheles funestus using Illumina RNA-seq technology
Q34351425	De novo transcriptome sequencing of the Octopus vulgaris hemocytes using Illumina RNA-Seq technology: response to the infection by the gastrointestinal parasite Aggregata octopiana
Q21202055	De novo transcriptomic analysis of hydrogen production in the green alga Chlamydomonas moewusii through RNA-Seq
Q36526124	De-novo characterization of the soft-shelled turtle Pelodiscus sinensis transcriptome using Illumina RNA-Seq technology
Q91810027	Deciphering Genetic Architecture of Adventitious Root and Related Shoot Traits in Populus Using QTL Mapping and RNA-Seq Data
Q49029169	Deciphering Genetic Factors that Determine Melon Fruit-Quality Traits Using RNA-Seq-Based High-Resolution QTL and eQTL Mapping.
Q36167888	Deciphering Transcriptional Programming during Pod and Seed Development Using RNA-Seq in Pigeonpea (Cajanus cajan)
Q35151167	Deciphering gamma-decalactone biosynthesis in strawberry fruit using a combination of genetic mapping, RNA-Seq and eQTL analyses
Q99566591	Deciphering the Early Mouse Embryo Transcriptome by Low-Input RNA-Seq
Q113695657	Deciphering the Genetic Basis of Root and Biomass Traits in Rapeseed (Brassica napus L.) through the Integration of GWAS and RNA-Seq under Nitrogen Stress
Q90365545	Deconvoluting tumor-infiltrating immune cells from RNA-seq data using quanTIseq
Q89835221	Deconvolution of RNA-Seq Analysis of Hyperbaric Oxygen-Treated Mice Lungs Reveals Mesenchymal Cell Subtype Changes
Q50097486	Deep Computational Circular RNA Analytics from RNA-seq Data.
Q28604213	Deep RNA-Seq profile reveals biodiversity, plant-microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues
Q92292678	Deep RNA-Seq reveals miRNome differences in mammary tissue of lactating Holstein and Montbéliarde cows
Q33456843	Deep RNA-Seq to unlock the gene bank of floral development in Sinapis arvensis
Q34778274	Deep RNA-Seq uncovers the peach transcriptome landscape
Q89738746	Deep RNA-seq analysis reveals key responding aspects of wild banana relative resistance to Fusarium oxysporum f. sp. cubense tropical race 4
Q112639549	Deep learning using bulk RNA-seq data expands cell landscape identification in tumor microenvironment
Q91516220	Deep learning-based cancer survival prognosis from RNA-seq data: approaches and evaluations
Q100510347	Deep small RNA-Seq reveals microRNAs expression profiles in lactating mammary gland of 2 sheep breeds with different milk performance
Q93000058	Deep transcriptome analysis using RNA-Seq suggests novel insights into molecular aspects of fat-tail metabolism in sheep
Q92688529	Deep-learning augmented RNA-seq analysis of transcript splicing
Q36328350	Defining Brugia malayi and Wolbachia symbiosis by stage-specific dual RNA-seq
Q92819794	Defining housekeeping genes suitable for RNA-seq analysis of the human allograft kidney biopsy tissue
Q38724926	Defining the clonality of peripheral T cell lymphomas using RNA-seq.
Q42775884	Defining the genome-wide role of CRE1 during carbon catabolite repression in Trichoderma reesei using RNA-Seq analysis
Q35088957	Defining the transcriptomic landscape of Candida glabrata by RNA-Seq.
Q38431799	Defining transcribed regions using RNA-seq
Q64109111	DegNorm: normalization of generalized transcript degradation improves accuracy in RNA-seq analysis
Q38873914	DegPack: a web package using a non-parametric and information theoretic algorithm to identify differentially expressed genes in multiclass RNA-seq samples
Q114061404	Delineating transcriptional crosstalk between Mycobacterium avium subsp. paratuberculosis and human THP-1 cells at the early stage of infection via dual RNA-seq analysis
Q64929676	Delineation of the Genera Haemoproteus and Plasmodium Using RNA-Seq and Multi-gene Phylogenetics.
Q36819457	Depletion of ribosomal RNA for mosquito gut metagenomic RNA-seq
Q34178885	Design and validation issues in RNA-seq experiments
Q30691324	Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki)
Q38266828	Designing Microarray and RNA-seq Experiments for Greater Systems Biology Discovery in Modern Plant Genomics
Q35721854	Designing alternative splicing RNA-seq studies. Beyond generic guidelines
Q26823100	Designing microarray and RNA-Seq experiments for greater systems biology discovery in modern plant genomics
Q46269319	Detailed transcriptome analysis of the plant growth promoting Paenibacillus riograndensis SBR5 by using RNA-seq technology
Q98384386	Detecting Allele-Specific Alternative Splicing from Population-Scale RNA-Seq Data
Q31031790	Detecting Differentially Expressed Genes with RNA-seq Data Using Backward Selection to Account for the Effects of Relevant Covariates
Q31002117	Detecting Multivariate Gene Interactions in RNA-Seq Data Using Optimal Bayesian Classification
Q31136121	Detecting Sources of Transcriptional Heterogeneity in Large-Scale RNA-Seq Data Sets
Q34313279	Detecting differential usage of exons from RNA-seq data
Q28716005	Detecting transcription of ribosomal protein pseudogenes in diverse human tissues from RNA-seq data
Q91571187	Detecting, Categorizing, and Correcting Coverage Anomalies of RNA-Seq Quantification
Q90792696	Detection and benchmarking of somatic mutations in cancer genomes using RNA-seq data
Q34270083	Detection and quantification of alternative splicing variants using RNA-seq.
Q31105210	Detection and visualization of differential splicing in RNA-Seq data with JunctionSeq
Q36359071	Detection of Bidirectional Promoter-Derived lncRNAs from Small-Scale Samples Using Pre-Amplification-Free Directional RNA-seq Method
Q64916737	Detection of condition-specific marker genes from RNA-seq data with MGFR.
Q31043228	Detection of generic differential RNA processing events from RNA-seq data
Q88319995	Detection of genetic variants between different Polish Landrace and Puławska pigs by means of RNA-seq analysis
Q64108659	Detection of human papillomavirus in cases of head and neck squamous cell carcinoma by RNA-seq and VirTect
Q35826206	Detection of murine leukemia virus in the Epstein-Barr virus-positive human B-cell line JY, using a computational RNA-Seq-based exogenous agent detection pipeline, PARSES.
Q64039679	Detection of novel fusion-transcripts by RNA-Seq in T-cell lymphoblastic lymphoma
Q28687136	Detection of phase-dependent transcriptomic changes and Rubisco-mediated CO2 fixation into poly (3-hydroxybutyrate) under heterotrophic condition in Ralstonia eutropha H16 based on RNA-seq and gene deletion analyses
Q35306500	Detection of plant viruses in natural environments by using RNA-Seq
Q37384748	Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq
Q33550018	Detection of splice junctions from paired-end RNA-seq data by SpliceMap.
Q34046409	Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length
Q34294246	Detection of very long antisense transcripts by whole transcriptome RNA-Seq analysis of Listeria monocytogenes by semiconductor sequencing technology
Q34121120	Detection, annotation and visualization of alternative splicing from RNA-Seq data with SplicingViewer
Q34622555	Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach
Q34371534	Determination of sRNA expressions by RNA-seq in Yersinia pestis grown in vitro and during infection
Q88571040	Determination of single embryo sex in Macaca mulatta and Mus musculus RNA-Seq transcriptome profiles
Q112907120	Determining the gene expression pattern underlying L-DOPA-induced dyskinesisas in the 6-OHDA hemiparkinsonian rat model of Parkinson's disease
Q61803838	Development and Characterization of EST-SSR Markers From RNA-Seq Data in
Q90115390	Development and Validation of Tumor-educated Blood Platelets Integrin Alpha 2b (ITGA2B) RNA for Diagnosis and Prognosis of Non-small-cell Lung Cancer through RNA-seq
Q92190772	Development and Validation of an RNA-Seq-Based Prognostic Signature in Neuroblastoma
Q89180710	Development and Verification of an RNA Sequencing (RNA-Seq) Assay for the Detection of Gene Fusions in Tumors
Q98576895	Development and characterization of acidic-pH-tolerant mutants of Zymomonas mobilis through adaptation and next-generation sequencing-based genome resequencing and RNA-Seq
Q46665119	Development and characterization of genic-SSR markers from different Asia lotus (Nelumbo nucifera) types by RNA-seq
Q93521258	Development and evaluation of RNA-seq methods
Q34338644	Development and validation of genic-SSR markers in sesame by RNA-seq
Q57091543	Development of 12 microsatellite markers for Bombina orientails based on RNA-Seq and their usefulness in population genetic diversity
Q64263371	Development of Genome-Wide SNP Markers for Barley via Reference- Based RNA-Seq Analysis
Q98229528	Development of RNA-seq-based molecular markers for characterizing Thinopyrum bessarabicum and Secale introgressions in wheat
Q98716025	Development of SSR primers for Simulium( Eusimulium ) angustipes( Diptera: Simuliidae) based on RNA-seq dataset
Q92045187	Development of a RACE-based RNA-Seq approach to characterize the T-cell receptor repertoire of porcine γδ T cells
Q39319196	Development of a RNA-Seq Based Prognostic Signature in Lung Adenocarcinoma.
Q30612064	Development of strategies for SNP detection in RNA-seq data: application to lymphoblastoid cell lines and evaluation using 1000 Genomes data
Q93211286	DiPhiSeq: robust comparison of expression levels on RNA-Seq data with large sample sizes
Q57184633	Diagnosis of T-cell mediated kidney rejection in formalin fixed paraffin embedded tissues using RNA-Seq based machine learning algorithms
Q101577666	Diagnosis of thyroid neoplasm using support vector machine algorithms based on platelet RNA-seq
Q42778003	Diagnosis: RNA-seq for blood-based pan-cancer diagnostics
Q36990211	Diagnostic and Biological Significance of KIR Expression Profile Determined by RNA-Seq in Natural Killer/T-Cell Lymphoma
Q52716174	Diapause in a tropical oil-collecting bee: molecular basis unveiled by RNA-Seq.
Q36559327	DiffSplice: the genome-wide detection of differential splicing events with RNA-seq.
Q91942425	Differences in the Transcriptomic Response of Campylobacter coli and Campylobacter lari to Heat Stress
Q28546504	Differential Expression Analysis by RNA-Seq Reveals Perturbations in the Platelet mRNA Transcriptome Triggered by Pathogen Reduction Systems
Q30943464	Differential Expression Analysis for RNA-Seq Data
Q26774631	Differential Expression Analysis for RNA-Seq: An Overview of Statistical Methods and Computational Software
Q40574276	Differential Expression Analysis in RNA-Seq by a Naive Bayes Classifier with Local Normalization.
Q91077780	Differential Expression Analysis in RNA-seq Data Using a Geometric Approach
Q57055867	Differential Expression Analysis of RNA-seq Reads: Overview, Taxonomy and Tools
Q57186097	Differential Gene Expression Common to Acquired and Intrinsic Resistance to BRAF Inhibitor Revealed by RNA-Seq Analysis
Q34574451	Differential Gene Expression Landscape of Co-Existing Cervical Pre-Cancer Lesions Using RNA-seq
Q89619681	Differential Gene Expression Patterns Between Apical and Basal Inner Hair Cells Revealed by RNA-Seq
Q58603044	Differential Gene Expression of RNA-Seq Experiments of Primo Vessel in Rabbit Lymph
Q35668989	Differential RNA-seq (dRNA-seq) for annotation of transcriptional start sites and small RNAs in Helicobacter pylori.
Q36652783	Differential RNA-seq analysis comparing APC-defective and APC-restored SW480 colorectal cancer cells
Q24490182	Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation
Q28829909	Differential RNA-seq, Multi-Network Analysis and Metabolic Regulation Analysis of Kluyveromyces marxianus Reveals a Compartmentalised Response to Xylose
Q42206169	Differential RNA-seq: the approach behind and the biological insight gained
Q39961016	Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences
Q38743889	Differential analysis of RNA-seq incorporating quantification uncertainty
Q29614490	Differential analysis of gene regulation at transcript resolution with RNA-seq
Q30607343	Differential expression analysis for paired RNA-Seq data
Q30727551	Differential expression analysis of RNA-seq data at single-base resolution
Q31016167	Differential expression analysis of human endogenous retroviruses based on ENCODE RNA-seq data
Q36044823	Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
Q30769981	Differential expression analysis on RNA-Seq count data based on penalized matrix decomposition.
Q35581592	Differential expression in RNA-seq: a matter of depth
Q38430257	Differential expression of genes in HepG2 cells caused by UC001kfo RNAi as shown by RNA-seq
Q24633890	Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Q32186337	Differential gene expression analysis by RNA-seq reveals the importance of actin cytoskeletal proteins in erythroleukemia cells
Q30651161	Differential gene expression analysis using coexpression and RNA-Seq data
Q60303091	Differential gene expression between the vigorous and dwarf litchi cultivars based on RNA-Seq transcriptome analysis
Q39269369	Differential gene expression identified by RNA-Seq and qPCR in two sizes of pearl oyster (Pinctada fucata).
Q35196180	Differential gene expression in ovaries of Qira black sheep and Hetian sheep using RNA-Seq technique
Q34356351	Differential gene expression in tamoxifen-resistant breast cancer cells revealed by a new analytical model of RNA-Seq data
Q55348409	Differential gene expression revealed with RNA-Seq and parallel genotype selection of the ornithine decarboxylase gene in fish inhabiting polluted areas.
Q107133672	Differential host circRNA expression profiles in human lung epithelial cells infected with SARS-CoV-2
Q90112109	Differential mechanisms regarding triclosan vs. bisphenol A and fluorene-9-bisphenol induced zebrafish lipid-metabolism disorders by RNA-Seq
Q28660239	Differential meta-analysis of RNA-seq data from multiple studies
Q92067122	Differential regulation of mycelial growth and aflatoxin biosynthesis by Aspergillus flavus under different temperatures as revealed by strand-specific RNA-Seq
Q91089204	Differential regulatory network-based quantification and prioritization of key genes underlying cancer drug resistance based on time-course RNA-seq data
Q42918071	Differential stress transcriptome landscape of historic and recently emerged hypervirulent strains of Clostridium difficile strains determined using RNA-seq
Q41992295	Differential transcriptome analysis of leaves of tea plant (Camellia sinensis) provides comprehensive insights into the defense responses to Ectropis oblique attack using RNA-Seq
Q62108437	Differentially Expressed Genes in Hypericin-Containing Hypericum perforatum Leaf Tissues as Revealed by De Novo Assembly of RNA-Seq
Q30853116	Differentially expressed genes from RNA-Seq and functional enrichment results are affected by the choice of single-end versus paired-end reads and stranded versus non-stranded protocols
Q95336953	Differentially expressed genes identified through RNA-seq with extreme values of principal components for beef fatty acid in Nelore cattle
Q88664307	Differentiation of sow and mouse ovarian granulosa cells exposed to zearalenone in vitro using RNA-seq gene expression
Q38755442	Differentiation-inducing and anti-proliferative activities of isoliquiritigenin and all-trans-retinoic acid on B16F0 melanoma cells: Mechanisms profiling by RNA-seq
Q30946349	Digital gene expression approach over multiple RNA-Seq data sets to detect neoblast transcriptional changes in Schmidtea mediterranea
Q93197785	Direct Metatranscriptome RNA-seq and Multiplex RT-PCR Amplicon Sequencing on Nanopore MinION - Promising Strategies for Multiplex Identification of Viable Pathogens in Food
Q42773447	Direct isolation and RNA-seq reveal environment-dependent properties of engrafted neural stem/progenitor cells
Q37272461	Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome
Q31125424	Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling
Q60930436	Discerning novel splice junctions derived from RNA-seq alignment: a deep learning approach
Q31138145	Discovering Single Nucleotide Polymorphisms Regulating Human Gene Expression Using Allele Specific Expression from RNA-seq Data
Q30975957	Discovering What Dimensionality Reduction Really Tells Us About RNA-Seq Data
Q92609693	Discovering Yersinia-Host Interactions by Tissue Dual RNA-Seq
Q30574550	Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript
Q30840158	Discovering functional modules by topic modeling RNA-Seq based toxicogenomic data
Q30976066	Discovery and characterization of long intergenic non-coding RNAs (lincRNA) module biomarkers in prostate cancer: an integrative analysis of RNA-Seq data
Q34376375	Discovery and characterization of new transcripts from RNA-seq data in mouse CD4(+) T cells
Q37072907	Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq
Q94943521	Discovery of GLO1 New Related Genes and Pathways by RNA-Seq on A2E-Stressed Retinal Epithelial Cells Could Improve Knowledge on Retinitis Pigmentosa
Q38438398	Discovery of Organophosphate Resistance-Related Genes Associated With Well-known Resistance Mechanisms of Plutella xylostella (L.) (Lepidoptera: Plutellidae) by RNA-Seq
Q34955118	Discovery of Protein-lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets
Q113754152	Discovery of cold-resistance genes in Vitis amurensis using bud-based quantitative trait locus mapping and RNA-seq
Q112722549	Discovery of genes involved in anthocyanin biosynthesis from the rind and pith of three sugarcane varieties using integrated metabolic profiling and RNA-seq analysis
Q47881885	Discovery of novel stroke-responsive lncRNAs in the mouse cortex using genome-wide RNA-seq.
Q35023386	Discovery of novel transcripts and gametophytic functions via RNA-seq analysis of maize gametophytic transcriptomes.
Q36167162	Discovery of putative capsaicin biosynthetic genes by RNA-Seq and digital gene expression analysis of pepper
Q30877994	Discovery of replicating circular RNAs by RNA-seq and computational algorithms
Q30869256	Disease Biomarker Query from RNA-Seq Data
Q89497830	Disease Gene Prediction by Integrating PPI Networks, Clinical RNA-Seq Data and OMIM Data
Q30717777	Dispersion estimation and its effect on test performance in RNA-seq data analysis: a simulation-based comparison of methods
Q47926177	Dissecting Cell-Type Composition and Activity-Dependent Transcriptional State in Mammalian Brains by Massively Parallel Single-Nucleus RNA-Seq.
Q30653203	Dissecting the Characteristics and Dynamics of Human Protein Complexes at Transcriptome Cascade Using RNA-Seq Data
Q49189890	Dissection of Myogenic Differentiation Signatures in Chickens by RNA-Seq Analysis.
Q35950567	Dissection of early transcriptional responses to water stress in Arundo donax L. by unigene-based RNA-seq
Q42778146	Distinguishing States of Arrest: Genome-Wide Descriptions of Cellular Quiescence Using ChIP-Seq and RNA-Seq Analysis
Q41068482	Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons
Q30858067	Diverse strategies conferring extreme cadmium (Cd) tolerance in the dark septate endophyte (DSE), Exophiala pisciphila: evidence from RNA-seq data
Q37314348	Diversity in the complexity of phosphate starvation transcriptomes among rice cultivars based on RNA-Seq profiles
Q58795925	DoGFinder: a software for the discovery and quantification of readthrough transcripts from RNA-seq
Q92445884	Docker4Circ: A Framework for the Reproducible Characterization of circRNAs from RNA-Seq Data
Q42774620	Dormancy within Staphylococcus epidermidis biofilms: a transcriptomic analysis by RNA-seq
Q104558003	Downregulated genes by silencing MYC pathway identified with RNA-SEQ analysis as potential prognostic biomarkers in gastric adenocarcinoma
Q90660922	Drawing in the Net: Forty-Five Maize Gene Regulatory Networks from Over 6,000 RNA-Seq Samples
Q35688396	Drosophila anti-nematode and antibacterial immune regulators revealed by RNA-Seq
Q36025298	Drought stress tolerance strategies revealed by RNA-Seq in two sorghum genotypes with contrasting WUE.
Q112710377	Dual Host and Pathogen RNA-Seq Analysis Unravels Chicken Genes Potentially Involved in Resistance to Highly Pathogenic Avian Influenza Virus Infection
Q90369755	Dual RNA-Seq Analysis of Trichophyton rubrum and HaCat Keratinocyte Co-Culture Highlights Important Genes for Fungal-Host Interaction
Q93126066	Dual RNA-Seq Analysis of the Pine-Fusarium circinatum Interaction in Resistant (Pinus tecunumanii) and Susceptible (Pinus patula) Hosts
Q59807048	Dual RNA-Seq Uncovers Metabolic Amino Acids Dependency of the Intracellular Bacterium Infecting Atlantic Salmon
Q64067992	Dual RNA-Seq Unveils Pseudomonas plecoglossicida htpG Gene Functions During Host-Pathogen Interactions With Epinephelus coioides
Q90721815	Dual RNA-Seq Unveils the Role of the Pseudomonas plecoglossicida fliA Gene in Pathogen-Host Interaction with Larimichthys crocea
Q91977920	Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates
Q110733672	Dual RNA-Seq analysis of SARS-CoV-2 correlates specific human transcriptional response pathways directly to viral expression
Q91596639	Dual RNA-Seq characterization of host and pathogen gene expression in liver cells infected with Crimean-Congo Hemorrhagic Fever Virus
Q92440929	Dual RNA-Seq of Chlamydia and Host Cells
Q112643986	Dual RNA-Seq of H5N1 Avian Influenza Virus and Host Cell Transcriptomes Reveals Novel Insights Into Host-Pathogen Cross Talk
Q64117130	Dual RNA-Seq of Human Leprosy Lesions Identifies Bacterial Determinants Linked to Host Immune Response
Q42777187	Dual RNA-Seq of Lysobacter capsici AZ78 - Phytophthora infestans interaction shows the implementation of attack strategies by the bacterium and unsuccessful oomycete defense responses
Q92659581	Dual RNA-Seq of Mtb-Infected Macrophages In Vivo Reveals Ontologically Distinct Host-Pathogen Interactions
Q112284828	Dual RNA-Seq of Trunk Kidneys Extracted From Channel Catfish Infected With Yersinia ruckeri Reveals Novel Insights Into Host-Pathogen Interactions
Q91679140	Dual RNA-Seq reveals the role of a transcriptional regulator gene in pathogen-host interactions between Pseudomonas plecoglossicida and Epinephelus coioides
Q112296543	Dual RNA-Seq transcriptome analysis of chicken macrophage-like cells (HD11) infected in vitro with Eimeria tenella
Q92295176	Dual RNA-Seq uncovers the function of an ABC transporter gene in the host-pathogen interaction between Epinephelus coioides and Pseudomonas plecoglossicida
Q98775406	Dual RNA-seq analyses of a coral and its native symbiont during the establishment of symbiosis
Q112722346	Dual RNA-seq analysis of in vitro infection multiplicity and RNA depletion methods in Chlamydia-infected epithelial cells
Q60921346	Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l
Q61806387	Dual RNA-seq identifies human mucosal immunity protein Mucin-13 as a hallmark of Plasmodium exoerythrocytic infection
Q92601400	Dual RNA-seq in Streptococcus pneumoniae Infection Reveals Compartmentalized Neutrophil Responses in Lung and Pleural Space
Q36318990	Dual RNA-seq of Nontypeable Haemophilus influenzae and Host Cell Transcriptomes Reveals Novel Insights into Host-Pathogen Cross Talk
Q97069606	Dual RNA-seq of Orientia tsutsugamushi informs on host-pathogen interactions for this neglected intracellular human pathogen
Q64106455	Dual RNA-seq of Xanthomonas oryzae pv. oryzicola infecting rice reveals novel insights into bacterial-plant interaction
Q33650585	Dual RNA-seq of parasite and host reveals gene expression dynamics during filarial worm-mosquito interactions
Q34293864	Dual RNA-seq of pathogen and host
Q96294343	Dual RNA-seq provides novel insight into the roles of dksA from Pseudomonas plecoglossicida in pathogen-host interactions with large yellow croakers ( Larimichthys crocea)
Q40271653	Dual RNA-seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants
Q91063363	Dual RNA-seq reveals large-scale non-conserved genotype × genotype-specific genetic reprograming and molecular crosstalk in the mycorrhizal symbiosis
Q40067752	Dual RNA-seq reveals no plastic transcriptional response of the coccidian parasite Eimeria falciformis to host immune defenses
Q91305829	Dual RNA-seq reveals the effect of the flgM gene of Pseudomonas plecoglossicida on the immune response of Epinephelus coioides
Q37593791	Dual RNA-seq reveals viral infections in asthmatic children without respiratory illness which are associated with changes in the airway transcriptome
Q33701075	Dual RNA-seq transcriptional analysis of wheat roots colonized by Azospirillum brasilense reveals up-regulation of nutrient acquisition and cell cycle genes.
Q92751196	Dual RNA-seq uncovers the immune response of Larimichthys crocea to the secY gene of Pseudomonas plecoglossicida from the perspective of host-pathogen interactions
Q24285722	Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions
Q31029984	Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq
Q35769076	Dynamic Analysis of Gene Expression in Rice Superior and Inferior Grains by RNA-Seq
Q40566379	Dynamic Model for RNA-seq Data Analysis.
Q42128098	Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3'-UTR landscape across seven tumour types.
Q34813296	Dynamic expression of 3' UTRs revealed by Poisson hidden Markov modeling of RNA-Seq: implications in gene expression profiling
Q34057709	Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq
Q36391134	Dynamic-BM: multispecies Dynamic BodyMap database from temporal RNA-seq data.
Q26782685	Dynamics in Transcriptomics: Advancements in RNA-seq Time Course and Downstream Analysis
Q35986735	Dynamics of gene silencing during X inactivation using allele-specific RNA-seq.
Q42772828	Dysfunction in Ribosomal Gene Expression in the Hypothalamus and Hippocampus following Chronic Social Defeat Stress in Male Mice as Revealed by RNA-Seq
Q43673649	EBARDenovo: highly accurate de novo assembly of RNA-Seq with efficient chimera-detection.
Q35927135	EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments
Q39190922	EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments
Q55527452	EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments.
Q30991267	EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering
Q94067559	EPEN-09. RNA-SEQ ANALYSIS OF RECURRENT PAEDIATRIC EPENDYMOMAS REVEALS IMMUNOLOGICAL CHANGES SPECIFIC TO MOLECULAR SUBGROUPS
Q31061755	EPIG-Seq: extracting patterns and identifying co-expressed genes from RNA-Seq data
Q55106101	EPND-03. RNA-SEQ GENE EXPRESSION ANALYSIS OF 106 FORMALIN-FIXED PARAFFIN-EMBEDDED PAEDIATRIC EPENDYMOMAS.
Q38433079	Early and late gene expression profiles of the ovine mucosa in response to Haemonchus contortus infection employing Illumina RNA-seq technology
Q33909357	Early role for IL-6 signalling during generation of induced pluripotent stem cells revealed by heterokaryon RNA-Seq.
Q38378627	Editor's Highlight: Dose-Response Analysis of RNA-Seq Profiles in Archival Formalin-Fixed Paraffin-Embedded Samples
Q58882286	Editorial for “Diversity of the non-coding transcriptomes revealed by RNA-seq technologies”
Q91636477	Editorial: RNA-Seq Analysis: Methods, Applications and Challenges
Q37373958	Effect of Green Tea Extract on Systemic Metabolic Homeostasis in Diet-Induced Obese Mice Determined via RNA-Seq Transcriptome Profiles
Q35359751	Effect of RNA integrity on uniquely mapped reads in RNA-Seq
Q91547876	Effect of Transgenesis on mRNA and miRNA Profiles in Cucumber Fruits Expressing Thaumatin II
Q96648860	Effect of bovine leukemia virus (BLV) infection on bovine mammary epithelial cells RNA-seq transcriptome profile
Q120907775	Effect of flutianil on the morphology and gene expression of powdery mildew
Q35887166	Effect of low-expression gene filtering on detection of differentially expressed genes in RNA-seq data
Q38379253	Effect of method of deduplication on estimation of differential gene expression using RNA-seq
Q47271705	Effect of salt-stress on gene expression in citrus roots revealed by RNA-seq
Q37344173	Effect of sexual maturation on muscle gene expression of rainbow trout: RNA-Seq approach.
Q111965838	Effects of Gestational Nutrition on Post-Natal Fertility in Sheep
Q50107250	Effects of PrPC on DF-1 cells' biological processes and RNA-seq-based analysis of differential genes.
Q94545995	Effects of atmospheric ammonia on the production performance, serum biochemical indices, and liver RNA-seq data of laying ducks
Q89765634	Effects of bacterial haemorrhagic septicemia on the immune response of Leiocassis longirostris by RNA-Seq and microRNA-Seq
Q35948385	Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq
Q33354016	Effects of drought on gene expression in maize reproductive and leaf meristem tissue revealed by RNA-Seq
Q38460509	Effects of low temperature on mRNA and small RNA transcriptomes in Solanum lycopersicoides leaf revealed by RNA-Seq
Q46067317	Effects of nitrogen fertilization on global xylem transcript profiling of Eucalyptus urophylla x grandis evaluated by RNA-seq technology
Q92042330	Effects of oxidative stress on sex-specific gene expression in the copepod Tigriopus californicus revealed by single individual RNA-seq
Q30985807	Effects of subsampling on characteristics of RNA-seq data from triple-negative breast cancer patients
Q42850200	Effects of supplementary butyrate on butanol production and the metabolic switch in Clostridium beijerinckii NCIMB 8052: genome-wide transcriptional analysis with RNA-Seq
Q41620965	Effects of toxic Microcystis aeruginosa on the silver carp Hypophthalmichtys molitrix revealed by hepatic RNA-seq and miRNA-seq
Q30817919	Efficient RNA isoform identification and quantification from RNA-Seq data with network flows.
Q60302938	Efficient and accurate detection of splice junctions from RNA-seq with Portcullis
Q30463597	Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
Q34467479	Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote
Q90464035	Efficient identification of multiple pathways: RNA-Seq analysis of livers from 56Fe ion irradiated mice
Q89599719	Eleven grand challenges in single-cell data science
Q64962178	Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers.
Q47140029	Elucidating the 16S rRNA 3' boundaries and defining optimal SD/aSD pairing in Escherichia coli and Bacillus subtilis using RNA-Seq data
Q98611566	Elucidation of resistance signaling and identification of powdery mildew resistant mapping loci (ClaPMR2) during watermelon-Podosphaera xanthii interaction using RNA-Seq and whole-genome resequencing approach
Q37683834	Elucidation of terpenoid metabolism in Scoparia dulcis by RNA-seq analysis
Q33603321	Elucidation of the sequential transcriptional activity in Escherichia coli using time-series RNA-seq data
Q92296101	Embryoid body-based RNA-seq analyses reveal a potential TBBPA multifaceted developmental toxicity
Q28959158	Empirical Bayes analysis of RNA-seq data for detection of gene expression heterosis
Q36251645	Empirical assessment of analysis workflows for differential expression analysis of human samples using RNA-Seq
Q59340596	Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance
Q31031593	Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data.
Q46083279	Enabling proteomic studies with RNA-Seq: The proteome of tomato pollen as a test case
Q55249422	Enhanced Methods To Capture the Entire Small-RNA Transcriptome for RNA-Seq.
Q92504725	Enhanced migration and adhesion of peripheral blood neutrophils from SAPHO patients revealed by RNA-Seq
Q33917256	Enhanced whole genome sequence and annotation of Clostridium stercorarium DSM8532T using RNA-seq transcriptomics and high-throughput proteomics
Q35813811	Enhancing Structural Annotation of Yeast Genomes with RNA-Seq Data
Q97069783	Enhancing droplet-based single-nucleus RNA-seq resolution using the semi-supervised machine learning classifier DIEM
Q47103159	Ensemble Modeling Approach Targeting Heterogeneous RNA-Seq data: Application to Melanoma Pseudogenes
Q42393138	Erratum for Baddal et al., Dual RNA-seq of Nontypeable Haemophilus influenzae and Host Cell Transcriptomes Reveals Novel Insights into Host-Pathogen Cross Talk
Q42619389	Erratum to: 'Identification of candidate gonadal sex differentiation genes in the chicken embryo using RNA-seq'.
Q42872788	Erratum to: 'NMFP: a non-negative matrix factorization based preselection method to increase accuracy of identifying mRNA isoforms from RNA-seq data'.
Q42388835	Erratum to: A benchmark for RNA-seq quantification pipelines.
Q42766983	Erratum to: A benchmark for RNA-seq quantification pipelines.
Q42401162	Erratum to: A survey of best practices for RNA-seq data analysis
Q43158746	Erratum to: Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data.
Q42554255	Erratum to: Dynamics of gene silencing during X inactivation using allele-specific RNA-seq.
Q89543568	Erratum to: RNA-Seq and Expression Arrays: Selection Guidelines for Genome-Wide Expression Profiling
Q42738931	Erratum to: Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis.
Q42573014	Erratum: An iteration normalization and test method for differential expression analysis of RNA-seq data
Q31043261	Erratum: Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation
Q91315029	Erratum: Comprehensive multi-center assessment of small RNA-seq methods for quantitative miRNA profiling
Q41131980	Erratum: How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?
Q88087997	Erratum: Near-optimal probabilistic RNA-seq quantification
Q57177474	Erratum: RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant alternative splicings
Q57899123	Erratum: Single-neuron RNA-Seq: technical feasibility and reproducibility
Q42293595	Erratum: Targeted RNA-Seq profiling of splicing pattern in the DMD gene: exons are mostly constitutively spliced in human skeletal muscle
Q30863640	Error estimates for the analysis of differential expression from RNA-seq count data
Q36023606	Errors in RNA-Seq quantification affect genes of relevance to human disease
Q30824896	Estimates of allele-specific expression in Drosophila with a single genome sequence and RNA-seq data
Q33431012	Estimating accuracy of RNA-Seq and microarrays with proteomics
Q112614336	Estimating and Correcting for Off-Target Cellular Contamination in Brain Cell Type Specific RNA-Seq Data
Q35835458	Estimating mRNA lengths from Plasmodium falciparum genes by Virtual Northern RNA-seq analysis.
Q92202718	Estimating the strength of expression conservation from high throughput RNA-seq data
Q33876976	Estimation of alternative splicing isoform frequencies from RNA-Seq data
Q30586660	Estimation of data-specific constitutive exons with RNA-Seq data
Q30994871	Estimation of isoform expression in RNA-seq data using a hierarchical Bayesian model
Q89017899	Evaluating Programs for Predicting Genes and Transcripts with RNA-Seq Support in Fungal Genomes
Q33859391	Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays
Q59639247	Evaluating statistical learning methods for cell type classification and feature selection using RNA-seq data
Q28546581	Evaluating the Stability of RNA-Seq Transcriptome Profiles and Drug-Induced Immune-Related Expression Changes in Whole Blood
Q48534881	Evaluating the bias of circRNA predictions from total RNA-Seq data.
Q90118425	Evaluating the performance of targeted sequence capture, RNA-Seq, and degenerate-primer PCR cloning for sequencing the largest mammalian multigene family
Q35903055	Evaluating whole transcriptome amplification for gene profiling experiments using RNA-Seq
Q62493086	Evaluation and application of RNA-Seq by MinION
Q38636601	Evaluation and comparison of computational tools for RNA-seq isoform quantification
Q92662398	Evaluation of SCD, ACACA and FASN Mutations: Effects on Pork Quality and Other Production Traits in Pigs Selected Based on RNA-Seq Results
Q90074587	Evaluation of Seven Different RNA-Seq Alignment Tools Based on Experimental Data from the Model Plant Arabidopsis thaliana
Q35757609	Evaluation of Unbiased Next-Generation Sequencing of RNA (RNA-seq) as a Diagnostic Method in Influenza Virus-Positive Respiratory Samples.
Q47112597	Evaluation of Whole Transcriptome Amplification Methods by RNA-Seq
Q35034904	Evaluation of alignment algorithms for discovery and identification of pathogens using RNA-Seq
Q30717960	Evaluation of assembly strategies using RNA-seq data associated with grain development of wheat (Triticum aestivum L.).
Q112640809	Evaluation of critical data processing steps for reliable prediction of gene co-expression from large collections of RNA-seq data
Q30885438	Evaluation of de novo transcriptome assemblies from RNA-Seq data
Q34441429	Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura
Q30000696	Evaluation of experimental design and computational parameter choices affecting analyses of ChIP-seq and RNA-seq data in undomesticated poplar trees
Q58568150	Evaluation of immune repertoire inference methods from RNA-seq data
Q36271926	Evaluation of logistic regression models and effect of covariates for case-control study in RNA-Seq analysis
Q31018196	Evaluation of methods for differential expression analysis on multi-group RNA-seq count data
Q31031422	Evaluation of potential candidate genes involved in salinity tolerance in striped catfish (Pangasianodon hypophthalmus) using an RNA-Seq approach
Q59809063	Evaluation of skin expression profiles of patients with vitiligo treated with narrow-band UVB therapy by targeted RNA-seq
Q58602730	Evaluation of the Expression of Genes Associated with Inflammation and Apoptosis in Androgenetic Alopecia by Targeted RNA-Seq
Q59804830	Evaluation of the capacities of mouse TCR profiling from short read RNA-seq data
Q34099676	Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens
Q94452401	Evaluation of the effects of cell-dispensing using an inkjet-based bioprinter on cell integrity by RNA-seq analysis
Q42695531	Evaluation of tools for long read RNA-seq splice-aware alignment
Q55078074	Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion.
Q38712218	Evaluation of two public genome references for chinese hamster ovary cells in the context of rna-seq based gene expression analysis.
Q112709734	Evaluation of various RNA-seq approaches for identification of gene outrons in the flatworm Opisthorchis felineus
Q90320905	Event Analysis: Using Transcript Events To Improve Estimates of Abundance in RNA-seq Data
Q52723080	Examination of Csr regulatory circuitry using epistasis analysis with RNA-seq (Epi-seq) confirms that CsrD affects gene expression via CsrA, CsrB and CsrC.
Q55690479	Examination of the xanthosine response on gene expression of mammary epithelial cells using RNA-seq technology.
Q108590593	Examining Short-Term Responses to a Long-Term Problem: RNA-Seq Analyses of Iron Deficiency Chlorosis Tolerant Soybean
Q112952902	Examining the role of cohesin subunit Rad21 in malignancy and development
Q36011305	Examining the transcriptional response of overexpressing anthranilate synthase in the hairy roots of an important medicinal plant Catharanthus roseus by RNA-seq
Q33852828	ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments
Q112279847	Expansion of Schizophrenia Gene Network Knowledge Using Machine Learning Selected Signals From Dorsolateral Prefrontal Cortex and Amygdala RNA-seq Data
Q38786246	Experimental Design and Power Calculation for RNA-seq Experiments
Q36305980	Experimental Design for Laser Microdissection RNA-Seq: Lessons from an Analysis of Maize Leaf Development
Q34486787	Experimental validation of methods for differential gene expression analysis and sample pooling in RNA-seq
Q38440193	Exploration of ZEA cytotoxicity to mouse endometrial stromal cells and RNA-seq analysis
Q27334371	Exploration of molecular pathways mediating electric field-directed Schwann cell migration by RNA-seq
Q36324753	Exploration of small RNA-seq data for small non-coding RNAs in Human Colorectal Cancer.
Q112716066	Exploratory RNA-seq analysis in healthy subjects reveals vulnerability to viral infections during a 12- month period of isolation and confinement
Q112707798	Explore the effect of LLY-283 on the ototoxicity of auditory cells caused by cisplatin: A bioinformatic analysis based on RNA-seq
Q30727957	Exploring candidate genes for pericarp russet pigmentation of sand pear (Pyrus pyrifolia) via RNA-Seq data in two genotypes contrasting for pericarp color
Q91986901	Exploring differentially expressed genes between anagen and telogen secondary hair follicle stem cells from the Cashmere goat (Capra hircus) by RNA-Seq
Q34701972	Exploring differentially expressed genes by RNA-Seq in cashmere goat (Capra hircus) skin during hair follicle development and cycling
Q35222137	Exploring differentially expressed genes in the ovaries of uniparous and multiparous goats using the RNA-Seq (Quantification) method
Q52347368	Exploring differentially expressed genes related to metabolism by RNA-Seq in goat liver after dexamethasone treatment.
Q93013535	Exploring differentially expressed key genes related to development of follicle by RNA-seq in Peking ducks (Anas Platyrhynchos)
Q98280940	Exploring sunflower responses to Sclerotinia head rot at early stages of infection using RNA-seq analysis
Q30883956	Exploring the RNA editing potential of RNA-Seq data by ExpEdit
Q33957362	Exploring the Schistosoma mansoni adult male transcriptome using RNA-seq
Q93067754	Exploring the genetics of lesion and nodal resistance in pea (Pisum sativum L.) to Sclerotinia sclerotiorum using genome-wide association studies and RNA-Seq
Q34070048	Exploring the gonad transcriptome of two extreme male pigs with RNA-seq
Q43500471	Exploring the sampling universe of RNA-seq
Q33890699	Exploring the stability of long intergenic non-coding RNA in K562 cells by comparative studies of RNA-Seq datasets
Q98165240	Exploring transcriptional switches from pairwise, temporal and population RNA-Seq data using deepTS
Q46508666	Expression Profiling Smackdown: Human Transcriptome Array HTA 2.0 vs. RNA-Seq
Q61446251	Expression analysis of lung miRNAs responding to ovine VM virus infection by RNA-seq
Q33564962	Expression of Porphyromonas gingivalis small RNA in response to hemin availability identified using microarray and RNA-seq analysis
Q92838645	Expression of RSK4 in lung adenocarcinoma tissue and its clinicopathological value: a study based on RNA-seq data and immunohistochemistry
Q64936825	Expression profile of circular RNAs in infantile hemangioma detected by RNA-Seq.
Q38760009	Expression profiles of a cytoplasmic male sterile line of Gossypium harknessii and its fertility restorer and maintainer lines revealed by RNA-Seq
Q33974147	ExpressionPlot: a web-based framework for analysis of RNA-Seq and microarray gene expression data
Q92855055	Expressions of HLA Class II Genes in Cutaneous Melanoma Were Associated with Clinical Outcome: Bioinformatics Approaches and Systematic Analysis of Public Microarray and RNA-Seq Datasets
Q108127065	Extended Archaeal Histone-Based Chromatin Structure Regulates Global Gene Expression in
Q90939398	Extension of Partial Gene Transcripts by Iterative Mapping of RNA-Seq Raw Reads
Q59526322	Extension of the sheep sequence space using composite transcriptome assembly of RNA-Seq data in a sheep model for delayed bone healing
Q31161565	External calibration with Drosophila whole-cell spike-ins delivers absolute mRNA fold changes from human RNA-Seq and qPCR data.
Q89490045	Extracting novel hypotheses and findings from RNA-seq data
Q30875935	Extraction of poly(A) sites from large-scale RNA-Seq data.
Q39356439	FBB: a fast Bayesian-bound tool to calibrate RNA-seq aligners.
Q33985507	FDM: a graph-based statistical method to detect differential transcription using RNA-seq data
Q111899896	FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences
Q31036771	FRAMA: from RNA-seq data to annotated mRNA assemblies
Q38418597	FX: an RNA-Seq analysis tool on the cloud.
Q112729990	Factorial study of the RNA-seq computational workflow identifies biases as technical gene signatures
Q36399397	Fast Bootstrapping-Based Estimation of Confidence Intervals of Expression Levels and Differential Expression from RNA-Seq Data.
Q30990462	Fast and accurate approximate inference of transcript expression from RNA-seq data
Q104736931	FastD: Fast detection of insecticide target-site mutations and overexpressed detoxification genes in insect populations from RNA-Seq data
Q64067202	FastqPuri: high-performance preprocessing of RNA-seq data
Q90480916	Feasibility of primary human cell cultures as a model for adamantinomatous craniopharyngioma research: Evidence from RNA-Seq analysis
Q39013930	Feasibility of sample size calculation for RNA-seq studies
Q38862565	Female rat transcriptome response to infraorbital nerve transection differs from that of males: RNA-seq
Q92595977	FilTar: using RNA-Seq data to improve microRNA target prediction accuracy in animals
Q103825006	Finding a suitable library size to call variants in RNA-Seq
Q34086288	Finding consistent patterns: a nonparametric approach for identifying differential expression in RNA-Seq data
Q35038301	Finding the active genes in deep RNA-seq gene expression studies
Q36170695	Fine Mapping of a Dravet Syndrome Modifier Locus on Mouse Chromosome 5 and Candidate Gene Analysis by RNA-Seq
Q35994195	Fine mapping and RNA-Seq unravels candidate genes for a major QTL controlling multiple fiber quality traits at the T1 region in upland cotton
Q37734409	FineSplice, enhanced splice junction detection and quantification: a novel pipeline based on the assessment of diverse RNA-Seq alignment solutions.
Q36587725	Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defense responses to Erwinia amylovora pathogen infection.
Q61798527	First RNA-seq approach to study fruit set and parthenocarpy in zucchini (Cucurbita pepo L.)
Q52672863	First insight into the viral community of the cnidarian model metaorganism Aiptasia using RNA-Seq data.
Q35648917	Five pectinase gene expressions highly responding to heat stress in rice floral organs revealed by RNA-seq analysis
Q30863683	FlaiMapper: computational annotation of small ncRNA-derived fragments using RNA-seq high-throughput data.
Q30702608	Flexible analysis of RNA-seq data using mixed effects models.
Q37649506	Flexible expressed region analysis for RNA-seq with derfinder
Q101466721	Fluorescent protein-based imaging and tissue-specific RNA-seq analysis of Arabidopsis hydathodes
Q42778283	FlyAtlas 2: a new version of the Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data.
Q42778142	Formation of Staphylococcus aureus Biofilm in the Presence of Sublethal Concentrations of Disinfectants Studied via a Transcriptomic Analysis Using Transcriptome Sequencing (RNA-seq).
Q31152330	Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data.
Q30938549	From Gigabyte to Kilobyte: A Bioinformatics Protocol for Mining Large RNA-Seq Transcriptomics Data
Q35659942	From Glacier to Sauna: RNA-Seq of the Human Pathogen Black Fungus Exophiala dermatitidis under Varying Temperature Conditions Exhibits Common and Novel Fungal Response
Q24612983	From RNA-seq reads to differential expression results
Q57301626	From RNA-seq to Biological Inference: Using Compositional Data Analysis in Meta-Transcriptomics
Q34032778	From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.).
Q39505435	From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline
Q35127498	From root to fruit: RNA-Seq analysis shows that arbuscular mycorrhizal symbiosis may affect tomato fruit metabolism
Q36257816	FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples.
Q40222639	FuMa: reporting overlap in RNA-seq detected fusion genes.
Q98568770	FuSe: A tool to move RNA-Seq analyses from chromosomal/gene loci to functional grouping of mRNA transcripts
Q92853209	Fugacium Spliced Leader Genes Identified from Stranded RNA-Seq Datasets
Q94491652	Full Transcriptome Expression in Liver of Selenium-Deficient and High-Selenium Turkeys (Meleagris gallopavo) Determined by RNA-Seq (P24-025-19)
Q92260472	Full genome sequence of a novel potexvirus from Euonymus bungeanus Maxim based on RNA-Seq analysis
Q89633293	Full-Length Transcriptome Assembly of Italian Ryegrass Root Integrated with RNA-Seq to Identify Genes in Response to Plant Cadmium Stress
Q30988819	Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species
Q24620766	Full-length transcriptome assembly from RNA-Seq data without a reference genome
Q100295310	Full-length transcriptome sequencing combined with RNA-seq analysis revealed the immune response of fat greenling (Hexagrammos otakii) to Vibrio harveyi in early infection
Q92236256	Fully Bayesian analysis of RNA-seq counts for the detection of gene expression heterosis
Q91168047	Fully Bayesian analysis of allele-specific RNA-seq data
Q30935358	Fully automated pipeline for detection of sex linked genes using RNA-Seq data.
Q30966702	FunPat: function-based pattern analysis on RNA-seq time series data
Q34085150	Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq
Q30983060	FusionCancer: a database of cancer fusion genes derived from RNA-seq data.
Q34326701	FusionFinder: a software tool to identify expressed gene fusion candidates from RNA-Seq data.
Q34183040	FusionHunter: identifying fusion transcripts in cancer using paired-end RNA-seq.
Q34773807	FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq
Q90697862	FusionScan: accurate prediction of fusion genes from RNA-Seq data
Q112646268	GC-MS Profile of Hua-Feng-Dan and RNA-Seq Analysis of Induced Adaptive Responses in the Liver
Q34104119	GC-content normalization for RNA-Seq data
Q94353373	GE-33A COMPREHENSIVE ASSESSMENT OF VIRAL TRANSCRIPTS IN DNA- AND RNA-SEQ DATASETS FROM HIGH-GRADE GLIOMAS REVEALS NO ASSOCIATION
Q112701278	GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure
Q31036882	GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences.
Q30559308	GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data
Q38650696	GFusion: an Effective Algorithm to Identify Fusion Genes from Cancer RNA-Seq Data
Q35016662	GIIRA--RNA-Seq driven gene finding incorporating ambiguous reads
Q30656680	GLiMMPS: robust statistical model for regulatory variation of alternative splicing using RNA-seq data
Q64268360	GREIN: An Interactive Web Platform for Re-analyzing GEO RNA-seq Data
Q30850769	GSAASeqSP: a toolset for gene set association analysis of RNA-Seq data
Q64055571	GSEPD: a Bioconductor package for RNA-seq gene set enrichment and projection display
Q30586230	GSVA: gene set variation analysis for microarray and RNA-seq data.
Q113307868	GUESSmyLT: Software to guess the RNA-Seq library type of paired and single end read files
Q102386232	GWAS Based on RNA-Seq SNPs and High-Throughput Phenotyping Combined with Climatic Data Highlights the Reservoir of Valuable Genetic Diversity in Regional Tomato Landraces
Q90095877	GXD's RNA-Seq and Microarray Experiment Search: using curated metadata to reliably find mouse expression studies of interest
Q38692147	Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis
Q90292482	GeMoMa: Homology-Based Gene Prediction Utilizing Intron Position Conservation and RNA-seq Data
Q36883299	Gene Expression Changes during the Gummosis Development of Peach Shoots in Response to Lasiodiplodia theobromae Infection Using RNA-Seq
Q120490365	Gene Expression Profiles of Multiple Synchronous Lesions in Lung Adenocarcinoma
Q37577743	Gene Expression and Gene Ontology Enrichment Analysis for H3K4me3 and H3K4me1 in Mouse Liver and Mouse Embryonic Stem Cell Using ChIP-Seq and RNA-Seq
Q112650688	Gene Expression in Embryos From Norwegian Red Bulls With High or Low Non Return Rate: An RNA-Seq Study of in vivo-Produced Single Embryos
Q101466147	Gene Mining and Sequence Analysis of Purine Nucleosidase Based on RNA-Seq
Q38479481	Gene Ontology based housekeeping gene selection for RNA-seq normalization
Q30992177	Gene Ranking of RNA-Seq Data via Discriminant Non-Negative Matrix Factorization.
Q33730817	Gene dispersion is the key determinant of the read count bias in differential expression analysis of RNA-seq data
Q91908752	Gene expression analysis of bud burst process in European hazelnut (Corylus avellana L.) using RNA-Seq
Q113318615	Gene expression analysis of combined RNA-seq experiments using a receiver operating characteristic calibrated procedure
Q45070809	Gene expression atlas of fruit ripening and transcriptome assembly from RNA-seq data in octoploid strawberry (Fragaria × ananassa).
Q38480881	Gene expression change in human dental pulp cells exposed to a low-level toxic concentration of triethylene glycol dimethacrylate: an RNA-seq analysis
Q90751256	Gene expression in Rhizoglomus irregulare at two different time points of mycorrhiza establishment in Helianthus annuus roots, as revealed by RNA-seq analysis
Q88719639	Gene expression in adverse reaction to metal debris around metal-on-metal arthroplasty: An RNA-Seq-based study
Q42772966	Gene expression in mouse oocytes by RNA-Seq
Q45323883	Gene expression profile and long non-coding RNA analysis, using RNA-Seq, in chicken embryonic fibroblast cells infected by avian leukosis virus J.
Q40412388	Gene expression profiling of non-polyadenylated RNA-seq across species.
Q36414478	Gene expression profiling signatures for the diagnosis and prevention of oral cavity carcinogenesis-genome-wide analysis using RNA-seq technology
Q38768922	Gene expression variability and the analysis of large-scale RNA-seq studies with the MDSeq
Q54067736	Gene expression: Host-pathogen duels revealed by dual RNA-seq in vivo.
Q92663632	Gene identification and transcriptome analysis of low cadmium accumulation rice mutant (lcd1) in response to cadmium stress using MutMap and RNA-seq
Q55432887	Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons.
Q34269106	Gene mapping via bulked segregant RNA-Seq (BSR-Seq).
Q33861598	Gene ontology analysis for RNA-seq: accounting for selection bias
Q34653968	Gene regulation by CcpA and catabolite repression explored by RNA-Seq in Streptococcus mutans
Q30991698	Gene set analysis approaches for RNA-seq data: performance evaluation and application guideline
Q37628043	Gene set analysis controlling for length bias in RNA-seq experiments
Q30640271	Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing
Q35253351	GeneFriends: a human RNA-seq-based gene and transcript co-expression database
Q36960673	GeneScissors: a comprehensive approach to detecting and correcting spurious transcriptome inference owing to RNA-seq reads misalignment
Q99633685	GeneTEFlow: A Nextflow-based pipeline for analysing gene and transposable elements expression from RNA-Seq data
Q111150058	GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data
Q35926580	GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information
Q28304414	General lack of global dosage compensation in ZZ/ZW systems? Broadening the perspective with RNA-seq
Q112281210	Generation and network analysis of an RNA-seq transcriptional atlas for the rat
Q110650530	Genes and SNPs Involved with Scrotal and Umbilical Hernia in Pigs
Q104486562	Genes associated with cognitive performance in the Morris water maze: an RNA-seq study
Q50105064	Genes sharing the protein family domain decrease the performance of classification with RNA-seq genomic signatures.
Q92620829	Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis
Q90229535	Genetic Characteristic and RNA-Seq Analysis in Transparent Mutant of Carp-Goldfish Nucleocytoplasmic Hybrid
Q94449988	Genetic Dissection of Hypertrophic Cardiomyopathy with Myocardial RNA-Seq
Q55361383	Genetic analysis for the grain number heterosis of a super-hybrid rice WFYT025 combination using RNA-Seq.
Q47141009	Genetic circuit characterization and debugging using RNA-seq
Q39216046	Genetic control of primary microRNA insight into cis- and trans-regulatory variations by RNA-seq.
Q36206120	Genetic divergence in the transcriptional engram of chronic alcohol abuse: A laser-capture RNA-seq study of the mouse mesocorticolimbic system
Q52426670	Genetic screens: Combining CRISPR perturbations and RNA-seq.
Q44272515	Genetic screens: RNA-seq into the toolkit
Q88010890	Genetic testing: The diagnostic power of RNA-seq
Q28821603	Genome Sequence of a Potential New Benyvirus Isolated from Mango RNA-seq Data
Q36352738	Genome improvement of the acarbose producer Actinoplanes sp. SE50/110 and annotation refinement based on RNA-seq analysis
Q42778174	Genome re-annotation of the wild strawberry Fragaria vesca using extensive Illumina- and SMRT-based RNA-seq datasets
Q96434113	Genome-Wide Analyses of the Genetic Screening of C2H2-Type Zinc Finger Transcription Factors and Abiotic and Biotic Stress Responses in Tomato (Solanum lycopersicum) Based on RNA-Seq Data
Q104796120	Genome-Wide Characterization of RNA Editing Sites in Primary Gastric Adenocarcinoma through RNA-seq Data Analysis
Q31052346	Genome-Wide Identification and Characterization of Long Non-Coding RNAs from Mulberry (Morus notabilis) RNA-seq Data
Q50097481	Genome-Wide circRNA Profiling from RNA-seq Data.
Q36245544	Genome-specific differential gene expressions in resynthesized Brassica allotetraploids from pair-wise crosses of three cultivated diploids revealed by RNA-seq
Q36094516	Genome-wide ChIP-seq and RNA-seq analyses of Pou3f1 during mouse pluripotent stem cell neural fate commitment
Q112937612	Genome-wide DNA Methylation and Gene Expression Analysis of Non-invasive and Invasive Melanoma Cell Lines
Q112295218	Genome-wide DNA methylation and RNA-seq analyses identify genes and pathways associated with doxorubicin resistance in a canine diffuse large B-cell lymphoma cell line
Q112712665	Genome-wide Identification and Analysis of Splicing QTLs in Multiple Sclerosis by RNA-Seq Data
Q30578510	Genome-wide Profiling of RNA splicing in prostate tumor from RNA-seq data using virtual microarrays
Q40291650	Genome-wide RNA-Seq analysis of breast muscles of two broiler chicken groups differing in shear force.
Q47316406	Genome-wide RNA-Seq identifies Fas/FasL-mediated tumoricidal activity of embryonic stem cells.
Q40431929	Genome-wide RNA-Seq of Human Motor Neurons Implicates Selective ER Stress Activation in Spinal Muscular Atrophy
Q58116082	Genome-wide RNA-seq analysis indicates that the DAG1 transcription factor promotes hypocotyl elongation acting on ABA, ethylene and auxin signaling
Q35346534	Genome-wide RNA-seq analysis of human and mouse platelet transcriptomes.
Q38784049	Genome-wide RNA-seq and ChIP-seq reveal Linc-YY1 function in regulating YY1/PRC2 activity during skeletal myogenesis
Q37739698	Genome-wide RNA-seq of iPSC-derived motor neurons indicates selective cytoskeletal perturbation in Brown-Vialetto disease that is partially rescued by riboflavin
Q60925609	Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes
Q37706227	Genome-wide analysis of differentially expressed lncRNAs and mRNAs in primary gonadotrophin adenomas by RNA-seq
Q47686335	Genome-wide analysis of rice cis-natural antisense transcription under cadmium exposure using strand-specific RNA-Seq.
Q112726169	Genome-wide association analysis identified both RNA-seq and DNA variants associated to paratuberculosis in Canadian Holstein cattle 'in vitro' experimentally infected macrophages
Q34203592	Genome-wide dynamic transcriptional profiling in Clostridium beijerinckii NCIMB 8052 using single-nucleotide resolution RNA-Seq
Q47176664	Genome-wide gene expression analysis in the amphioxus, Branchiostoma belcheri after poly (I: C) challenge using strand-specific RNA-seq
Q38610233	Genome-wide gene expression analysis of amphioxus (Branchiostoma belcheri) following lipopolysaccharide challenge using strand-specific RNA-seq
Q38435283	Genome-wide gene expression profiling of tongue squamous cell carcinoma by RNA-seq
Q92025445	Genome-wide identification and analysis of the eQTL lncRNAs in multiple sclerosis based on RNA-seq data
Q34831419	Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq
Q38472436	Genome-wide identification of novel long non-coding RNAs in Populus tomentosa tension wood, opposite wood and normal wood xylem by RNA-seq.
Q112723369	Genome-wide identification of sucrose nonfermenting-1-related protein kinase (SnRK) genes in barley and RNA-seq analyses of their expression in response to abscisic acid treatment
Q30017423	Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)
Q58763298	Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model
Q112692896	Genomic basis of sex change in fish
Q112221319	Genomic instability in the naturally and prematurely aged myocardium
Q91632045	Genomic profiling of Nipah virus using NGS driven RNA-Seq expression data
Q112725737	Genomic variants from RNA-seq for goats resistant or susceptible to gastrointestinal nematode infection
Q54502916	Genomics: the state of the art in RNA-seq analysis.
Q52850763	Getting Useful Information from RNA-Seq Contaminants: A Case of Study in the Oil-Collecting Bee Tetrapedia diversipes Transcriptome.
Q35833161	Getting the most out of RNA-seq data analysis
Q35014623	Giardia lamblia transcriptome analysis using TSS-Seq and RNA-Seq
Q104269428	Global Gene Expression Analysis Using RNA-seq Reveals the New Roles of Panax Notoginseng Saponins in Ischemic Cardiomyocytes
Q119723117	Global Transcriptomic Analysis of Bacteriophage-Host Interactions between a Kayvirus Therapeutic Phage and Staphylococcus aureus
Q98190379	Global analysis of differentially expressed genes between two Japonica rice varieties induced by low temperature during the booting stage by RNA-Seq
Q35127703	Global analysis of the Gossypium hirsutum L. Transcriptome during leaf senescence by RNA-Seq.
Q27499416	Global and unbiased detection of splice junctions from RNA-seq data
Q36959340	Global gene expression analysis using RNA-seq uncovered a new role for SR1/CAMTA3 transcription factor in salt stress
Q39082991	Global identification of alternative splicing via comparative analysis of SMRT- and Illumina-based RNA-seq in strawberry
Q35025537	Global insights into high temperature and drought stress regulated genes by RNA-Seq in economically important oilseed crop Brassica juncea
Q90196672	Global transcriptomic analysis of Cronobacter sakazakii CICC 21544 by RNA-seq under inorganic acid and organic acid stresses
Q98771192	Glycogene Expression Profiling of Hepatic Cells by RNA-Seq Analysis for Glyco-Biomarker Identification
Q57285035	Going the distance: optimizing RNA-Seq strategies for transcriptomic analysis of complex viral genomes
Q93031589	Good Citizenship Made Easy: A Step-by-Step Guide to Submitting RNA-Seq Data to NCBI
Q42773581	Grape RNA-Seq analysis pipeline environment.
Q90432984	Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets
Q28661505	Grouped False-Discovery Rate for Removing the Gene-Set-Level Bias of RNA-seq
Q42608562	Guidance for RNA-seq co-expression network construction and analysis: safety in numbers
Q62098046	Guidelines for RNA-seq projects: applications and opportunities in non-model decapod crustacean species
Q94332832	HGG-04. USE OF AN ADVANCED RNA-SEQ FUSION PIPELINE RESULTS IN THE TARGETED TREATMENT AND SUSTAINED CLINICAL RESPONSE OF CHILDREN WITH RECURRENT PEDIATRIC HIGH-GRADE GLIOMA
Q33781090	HLA typing from RNA-Seq sequence reads
Q30654393	HLA typing from RNA-seq data using hierarchical read weighting [corrected].
Q42063952	HLAProfiler utilizes k-mer profiles to improve HLA calling accuracy for rare and common alleles in RNA-seq data.
Q33747633	HMMSplicer: a tool for efficient and sensitive discovery of known and novel splice junctions in RNA-Seq data
Q97551466	HRT Atlas v1.0 database: redefining human and mouse housekeeping genes and candidate reference transcripts by mining massive RNA-seq datasets
Q58611636	Haemopedia RNA-seq: a database of gene expression during haematopoiesis in mice and humans
Q97421959	Handling multi-mapped reads in RNA-seq
Q35286142	Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads.
Q35788003	Harnessing Next Generation Sequencing in Climate Change: RNA-Seq Analysis of Heat Stress-Responsive Genes in Wheat (Triticum aestivum L.).
Q36448203	Heat Shock Factor Genes of Tall Fescue and Perennial Ryegrass in Response to Temperature Stress by RNA-Seq Analysis
Q38437761	Heat Stress Regulates the Expression of Genes at Transcriptional and Post-Transcriptional Levels, Revealed by RNA-seq in Brachypodium distachyon
Q92873134	Heating quinoa shoots results in yield loss by inhibiting fruit production and delaying maturity
Q92218030	Heterogeneity and plasticity in healthy and atherosclerotic vasculature explored by single-cell sequencing
Q39106351	Heterogeneity of Brain Ribosomal Genes Expression Following Positive Fighting Experience in Male Mice as Revealed by RNA-Seq.
Q31024703	Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data
Q49999942	Hierarchical Analysis of RNA-Seq Reads Improves the Accuracy of Allele-specific Expression.
Q36827180	Hierarchical Modeling and Differential Expression Analysis for RNA-seq Experiments with Inbred and Hybrid Genotypes
Q36102030	High concentrations of atmospheric ammonia induce alterations of gene expression in the breast muscle of broilers (Gallus gallus) based on RNA-Seq
Q112295060	High resolution RNA-seq profiling of genes encoding ribosomal proteins across different organs and developmental stages in Arabidopsis thaliana
Q92316337	High temperature reduces peel color in eggplant (Solanum melongena) as revealed by RNA-seq analysis
Q47250566	High-Throughput RNA-Seq Data Analysis of the Single Nucleotide Polymorphisms (SNPs) and Zygomorphic Flower Development in Pea (Pisum sativum L.).
Q94418684	High-resolution RNA-seq profiling of glioblastoma residual invasive cells isolated by a novel 5-ALA fluorescence based method
Q100991254	High-throughput Minitaturized RNA-Seq Library Preparation
Q42774586	High-throughput RNA-seq for allelic or locus-specific expression analysis in Arabidopsis-related species, hybrids, and allotetraploids.
Q91678695	High-throughput transcriptome-Seq and small RNA-Seq reveal novel functional genes and microRNAs for early embryonic arrest in humans
Q40133912	Highly sensitive and ultrafast read mapping for RNA-seq analysis
Q36839596	Hipposeq: a comprehensive RNA-seq database of gene expression in hippocampal principal neurons
Q92287307	Holistic optimization of an RNA-seq workflow for multi-threaded environments
Q91312943	Hormone and RNA-seq analyses reveal the mechanisms underlying differences in seed vigour at different maize ear positions
Q98618883	Host-Pathogen Interactions between Xanthomonas fragariae and Its Host Fragaria × ananassa Investigated with a Dual RNA-Seq Analysis
Q87891782	Host-Pathogen Transcriptomics by Dual RNA-Seq
Q113286659	Host-virus interactions in PK-15 cells infected with Pseudorabies virus Becker strain based on RNA-seq
Q35673108	How Many Genes Are Expressed in a Transcriptome? Estimation and Results for RNA-Seq
Q30982167	How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets
Q34523883	How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?
Q90444073	How does normalization impact RNA-seq disease diagnosis?
Q38889056	How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?
Q63648100	How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana
Q38794889	Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy
Q36236652	Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive
Q98783715	Humic-acid-driven escape from eye parasites revealed by RNA-seq and target-specific metabarcoding
Q93361169	Hypoglycemic mechanisms of Ganoderma lucidum polysaccharides F31 in db/db mice via RNA-seq and iTRAQ
Q35092935	IAOseq: inferring abundance of overlapping genes using RNA-seq data
Q97589978	IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data
Q47136070	IL2RG, identified as overexpressed by RNA-seq profiling of pancreatic intraepithelial neoplasia, mediates pancreatic cancer growth.
Q46224630	IMAGE GUIDED RNA-SEQ REVEALS SUBTYPE-SPECIFIC PATTERNS AT THE INFILTRATIVE MARGINS OF GLIOBLASTOMA.
Q62838139	IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis
Q113262433	IRREGULAR DISTRIBUTION OF SHARKA (PLUM POX VIRUS) SYMPTOMS IN PEACH IS RELATED TO DIFFERENTIAL GENE EXPRESSION EVIDENCED BY RNA-SEQ
Q30898093	IRcall and IRclassifier: two methods for flexible detection of intron retention events from RNA-Seq data
Q33850960	ISVASE: identification of sequence variant associated with splicing event using RNA-seq data.
Q30857408	IUTA: a tool for effectively detecting differential isoform usage from RNA-Seq data.
Q35198625	Identifiability of isoform deconvolution from junction arrays and RNA-Seq.
Q90123385	Identification and Analysis of Differentially Expressed Genes in Human Saphenous Vein Endothelial Cells Overexpressing Domain-Containing mTOR-Interacting Protein (DEPTOR) by RNA-Seq
Q37509515	Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq
Q33363626	Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq
Q91363443	Identification and Evaluation of Long Noncoding RNAs in Response to Handling Stress in Red Cusk-Eel (Genypterus chilensis) via RNA-seq
Q90828960	Identification and Massively Parallel Characterization of Regulatory Elements Driving Neural Induction
Q33625519	Identification and analysis of genes associated with the synthesis of bioactive constituents in Dendrobium officinale using RNA-Seq
Q31020094	Identification and analysis of house-keeping and tissue-specific genes based on RNA-seq data sets across 15 mouse tissues
Q60942362	Identification and characterization of SSR, SNP and InDel molecular markers from RNA-Seq data of guar (Cyamopsis tetragonoloba, L. Taub.) roots
Q92185208	Identification and characterization of circular RNA in lactating mammary glands from two breeds of sheep with different milk production profiles using RNA-Seq
Q89802644	Identification and characterization of mRNAs and lncRNAs of a barley shrunken endosperm mutant using RNA-seq
Q35927984	Identification and characterization of miR-31 potential targets by RNA-seq
Q57471524	Identification and expression analysis of ceftriaxone resistance-related genes in Neisseria gonorrhoeae integrating RNA-Seq data and qRT-PCR validation
Q41056051	Identification and functional analysis of differentially expressed genes in poorly differentiated hepatocellular carcinoma using RNA-seq
Q113558037	Identification and functional annotation of novel transcripts with altered expression in pancreatic cancer
Q36448986	Identification and preliminary characterization of chemosensory perception-associated proteins in the melon fly Bactrocera cucurbitae using RNA-seq
Q53348019	Identification and quantification of novel RNA isoforms in horn cancer of Bos indicus by comprehensive RNA-Seq.
Q89295138	Identification and removal of sequencing artifacts produced by mispriming during reverse transcription in multiple RNA-seq technologies
Q58763356	Identification and replication of RNA-Seq gene network modules associated with depression severity
Q111347761	Identification and tissue distribution of carboxylesterase (CXE) genes in Athetis lepigone (Lepidoptera: Noctuidae) by RNA-seq
Q42777929	Identification and visualisation of differential isoform expression in RNA-seq time series
Q42773286	Identification by FFPE RNA-Seq of a new recurrent inversion leading to RBM10-TFE3 fusion in renal cell carcinoma with subtle TFE3 break-apart FISH pattern
Q36341659	Identification of Biomarkers for Schistosoma-Associated Pulmonary Arterial Hypertension Based on RNA-Seq Data of Mouse Whole Lung Tissues
Q110962107	Identification of BvgA-Dependent and BvgA-Independent Small RNAs (sRNAs) in Bordetella pertussis Using the Prokaryotic sRNA Prediction Toolkit ANNOgesic
Q38442751	Identification of Candidate Anthocyanin-Related Genes by Transcriptomic Analysis of 'Furongli' Plum (Prunus salicina Lindl.) during Fruit Ripening Using RNA-Seq
Q91290208	Identification of Chimeric RNAs Using RNA-Seq Reads and Protein-Protein Interactions of Translated Chimeras
Q64108136	Identification of DNA-Methylated CpG Islands Associated With Gene Silencing in the Adult Body Tissues of the Ogye Chicken Using RNA-Seq and Reduced Representation Bisulfite Sequencing
Q37501806	Identification of Development-Related Genes in the Ovaries of Adult Harmonia axyridis (Pallas) Lady Beetles Using a Time- Series Analysis by RNA-seq
Q35930284	Identification of Differentially Expressed Genes Related to Dehydration Resistance in a Highly Drought-Tolerant Pear, Pyrus betulaefolia, as through RNA-Seq
Q97646274	Identification of Differentially Expressed Genes in Different Types of Broiler Skeletal Muscle Fibers Using the RNA-seq Technique
Q52584206	Identification of Differentially Expressed Genes in Porcine Ovaries at Proestrus and Estrus Stages Using RNA-Seq Technique.
Q27307827	Identification of Differentially Expressed Genes in RNA-seq Data of Arabidopsis thaliana: A Compound Distribution Approach
Q91290205	Identification of Fusion Transcripts from Unaligned RNA-Seq Reads Using ChimeRScope
Q35971572	Identification of Gene Networks for Residual Feed Intake in Angus Cattle Using Genomic Prediction and RNA-seq.
Q36356793	Identification of Genes Associated with Smad3-dependent Renal Injury by RNA-seq-based Transcriptome Analysis.
Q36145060	Identification of Genes Potentially Associated with the Fertility Instability of S-Type Cytoplasmic Male Sterility in Maize via Bulked Segregant RNA-Seq
Q36326377	Identification of HIF-1 signaling pathway in Pelteobagrus vachelli using RNA-Seq: effects of acute hypoxia and reoxygenation on oxygen sensors, respiratory metabolism, and hematology indices.
Q30895981	Identification of HPV integration and gene mutation in HeLa cell line by integrated analysis of RNA-Seq and MS/MS data
Q51335887	Identification of Hub Genes and Pathways in Zika Virus Infection Using RNA-Seq Data: A Network-Based Computational Approach.
Q108863259	Identification of Hub mRNAs and lncRNAs in Atrial Fibrillation Using Weighted Co-expression Network Analysis With RNA-Seq Data
Q28831082	Identification of Ice Plant (Mesembryanthemum crystallinum L.) MicroRNAs Using RNA-Seq and Their Putative Roles in High Salinity Responses in Seedlings
Q37265600	Identification of Immunity-Related Genes in Dialeurodes citri against Entomopathogenic Fungus Lecanicillium attenuatum by RNA-Seq Analysis
Q91675582	Identification of Key Long Non-Coding RNAs in the Pathology of Alzheimer's Disease and their Functions Based on Genome-Wide Associations Study, Microarray, and RNA-seq Data
Q92606271	Identification of MMP1 and MMP2 by RNA-seq analysis in laryngeal squamous cell carcinoma
Q58075445	Identification of Mutated Cancer Driver Genes in Unpaired RNA-Seq Samples
Q33807619	Identification of Nitrogen Consumption Genetic Variants in Yeast Through QTL Mapping and Bulk Segregant RNA-Seq Analyses.
Q30381770	Identification of Putative Nuclear Receptors and Steroidogenic Enzymes in Murray-Darling Rainbowfish (Melanotaenia fluviatilis) Using RNA-Seq and De Novo Transcriptome Assembly.
Q30882366	Identification of RNA polymerase III-transcribed Alu loci by computational screening of RNA-Seq data
Q38636608	Identification of SNPs associated with muscle yield and quality traits using allelic-imbalance analyses of pooled RNA-Seq samples in rainbow trout.
Q34339430	Identification of SNPs in RNA-seq data of two cultivars of Glycine max (soybean) differing in drought resistance
Q55669125	Identification of SNPs potentially related to immune responses and growth performance in Litopenaeus vannamei by RNA-seq analyses.
Q30894806	Identification of Salt-Stress-Induced Genes from the RNA-Seq Data of Reaumuria trigyna Using Differential-Display Reverse Transcription PCR.
Q91218308	Identification of Single Nucleotide Polymorphism in Red Clover (Trifolium pratense L.) Using Targeted Genomic Amplicon Sequencing and RNA-seq
Q90117749	Identification of Target Genes Mediated by Two-Component Regulators of Staphylococcus aureus Using RNA-seq Technology
Q37027880	Identification of Tissue-Specific Protein-Coding and Noncoding Transcripts across 14 Human Tissues Using RNA-seq
Q90021190	Identification of Transcription Factors Involved in the Regulation of Flowering in Adonis Amurensis Through Combined RNA-seq Transcriptomics and iTRAQ Proteomics
Q38604257	Identification of Transcriptional Regulators of Psoriasis from RNA-Seq Experiments
Q39771516	Identification of U2AF(35)-dependent exons by RNA-Seq reveals a link between 3' splice-site organization and activity of U2AF-related proteins.
Q95306598	Identification of Upstream Transcriptional Regulators of Ischemic Cardiomyopathy Using Cardiac RNA-Seq Meta-Analysis
Q98304080	Identification of a Major QTL and Candidate Gene Analysis of Salt Tolerance at the Bud Burst Stage in Rice (Oryza sativa L.) Using QTL-Seq and RNA-Seq
Q37564218	Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer
Q41612432	Identification of a RNA-Seq based prognostic signature with five lncRNAs for lung squamous cell carcinoma
Q90989645	Identification of a RNA-seq-based signature to improve prognostics for uterine sarcoma
Q42778121	Identification of a novel CSF3R-SPTAN1 fusion gene in an atypical chronic myeloid leukemia patient with t(1;9)(p34;q34) by RNA-Seq
Q42776882	Identification of a novel PARP14-TFE3 gene fusion from 10-year-old FFPE tissue by RNA-seq
Q42774899	Identification of a novel fusion gene (HLA-E and HLA-B) by RNA-seq analysis in esophageal squamous cell carcinoma
Q85435113	Identification of a novel gene fusion RNF213‑SLC26A11 in chronic myeloid leukemia by RNA-Seq
Q92054482	Identification of a novel regulatory pathway for PPARα by RNA-seq characterization of the endothelial cell lipid peroxidative injury transcriptome
Q34338228	Identification of a p-coumarate degradation regulon in Rhodopseudomonas palustris by Xpression, an integrated tool for prokaryotic RNA-seq data processing
Q92684501	Identification of alternative oxidase encoding genes in Caulerpa cylindracea by de novo RNA-Seq assembly analysis
Q111164747	Identification of azadirachtin responsive genes in Spodoptera frugiperda larvae based on RNA-seq
Q101120381	Identification of bona fide B2 SINE retrotransposon transcription through single-nucleus RNA-seq of the mouse hippocampus
Q110698454	Identification of cancer-related mutations in human pluripotent stem cells using RNA-seq analysis
Q53204880	Identification of candidate genes associated with fertility restoration of cytoplasmic male-sterility in onion (Allium cepa L.) using a combination of bulked segregant analysis and RNA-seq.
Q104737085	Identification of candidate genes controlling chilling tolerance of rice in the cold region at the booting stage by BSA-Seq and RNA-Seq
Q33750600	Identification of candidate genes for fiber length quantitative trait loci through RNA-Seq and linkage and physical mapping in cotton
Q36003683	Identification of candidate genes involved in wax deposition in Poa pratensis by RNA-seq
Q35777925	Identification of candidate gonadal sex differentiation genes in the chicken embryo using RNA-seq
Q57788791	Identification of ceRNA network based on a RNA-seq shows prognostic lncRNA biomarkers in human lung adenocarcinoma
Q52632500	Identification of circularRNAs and their targets in Gossypium under Verticillium wilt stress based on RNA-seq.
Q44354720	Identification of cold-responsive genes in a New Zealand alpine stick insect using RNA-Seq
Q34016056	Identification of common carp innate immune genes with whole-genome sequencing and RNA-Seq data
Q30938855	Identification of commonly dysregulated genes in colorectal cancer by integrating analysis of RNA-Seq data and qRT-PCR validation
Q44743866	Identification of core miRNA based on small RNA-seq and RNA-seq for colorectal cancer by bioinformatics
Q34633472	Identification of cytokinin-responsive genes using microarray meta-analysis and RNA-Seq in Arabidopsis
Q93206973	Identification of differential expression genes related to anthocyanin biosynthesis in carmine radish (Raphanus sativus L.) fleshy roots using comparative RNA-Seq method
Q91317816	Identification of differential gene expression in endothelial cells from young and aged mice using RNA-Seq technique
Q42777687	Identification of differentially expressed genes between subcutaneous and intramuscular adipose tissue of Large White pig using RNA-seq
Q35243215	Identification of differentially expressed genes in Chrysanthemum nankingense (Asteraceae) under heat stress by RNA Seq.
Q41960320	Identification of differentially expressed genes in the development of osteosarcoma using RNA-seq
Q89237242	Identification of epigenetic modulators in human breast cancer by integrated analysis of DNA methylation and RNA-Seq data
Q100656095	Identification of fertility-related genes for maize CMS-S via Bulked Segregant RNA-Seq
Q60937700	Identification of gene signatures from RNA-seq data using Pareto-optimal cluster algorithm
Q52669994	Identification of genes and pathways associated with MDR in MCF-7/MDR breast cancer cells by RNA-seq analysis.
Q89640234	Identification of genes and pathways related to atherosclerosis comorbidity and depressive behavior via RNA-seq and bioinformation analysis in ApoE-/- mice
Q34037579	Identification of genes critical for resistance to infection by West Nile virus using RNA-Seq analysis
Q40276521	Identification of genes involved in biosynthesis of mannan polysaccharides in Dendrobium officinale by RNA-seq analysis
Q34277325	Identification of genes related to white and black plumage formation by RNA-Seq from white and black feather bulbs in ducks
Q35734364	Identification of heat-responsive genes in carnation (Dianthus caryophyllus L.) by RNA-seq
Q90066071	Identification of heat-tolerance QTLs and high-temperature stress-responsive genes through conventional QTL mapping, QTL-seq and RNA-seq in tomato
Q36925498	Identification of host genes leading to West Nile virus encephalitis in mice brain using RNA-seq analysis
Q31125309	Identification of hub genes and regulatory factors of glioblastoma multiforme subgroups by RNA-seq data analysis
Q30986293	Identification of hub glycogenes and their nsSNP analysis from mouse RNA-Seq data
Q92591534	Identification of human miR-1839-5p by small RNA-seq, a miRNA enriched in neoplastic tissues
Q37490915	Identification of immunity-related genes in Ostrinia furnacalis against entomopathogenic fungi by RNA-seq analysis
Q40059565	Identification of immunity-related genes in Plutella xylostella in response to fungal peptide destruxin A: RNA-Seq and DGE analysis
Q53233480	Identification of important long non-coding RNAs and highly recurrent aberrant alternative splicing events in hepatocellular carcinoma through integrative analysis of multiple RNA-Seq datasets.
Q31105081	Identification of interleukin genes in Pogona vitticeps using a de novo transcriptome assembly from RNA-seq data
Q90194892	Identification of key differentially expressed genes and gene mutations in breast ductal carcinoma in situ using RNA-seq analysis
Q64058017	Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data
Q112277174	Identification of key genes and signaling pathways related to Hetian sheep wool density by RNA-seq technology
Q47213368	Identification of key microRNAs affecting drip loss in porcine longissimus dorsi by RNA-Seq
Q112294556	Identification of key pathways and genes in carotid atherosclerosis through bioinformatics analysis of RNA-seq data
Q91167918	Identification of lncRNAs-gene interactions in transcription regulation based on co-expression analysis of RNA-seq data
Q31037786	Identification of long non-coding RNA involved in osteogenic differentiation from mesenchymal stem cells using RNA-Seq data
Q90104943	Identification of lung adenocarcinoma-specific exosome RNAs in peripheral blood by RNA-Seq analysis
Q31113744	Identification of lung-specific genes by meta-analysis of multiple tissue RNA-seq data
Q40245075	Identification of mRNAs that move over long distances using an RNA-Seq analysis of Arabidopsis/Nicotiana benthamiana heterografts
Q28602801	Identification of miRNAs and Their Targets in the Liverwort Marchantia polymorpha by Integrating RNA-Seq and Degradome Analyses
Q28550919	Identification of microRNAs in Macaca fascicularis (Cynomolgus Monkey) by Homology Search and Experimental Validation by Small RNA-Seq and RT-qPCR Using Kidney Cortex Tissues
Q36348881	Identification of molecular targets for esophageal carcinoma diagnosis using miRNA-seq and RNA-seq data from The Cancer Genome Atlas: a study of 187 cases
Q97531400	Identification of new regulatory genes through expression pattern analysis of a global RNA-seq dataset from a Helicobacter pylori co-culture system
Q35689684	Identification of new viral genes and transcript isoforms during Epstein-Barr virus reactivation using RNA-Seq
Q104062282	Identification of novel alternative splicing biomarkers for breast cancer with LC/MS/MS and RNA-Seq
Q42773659	Identification of novel exons and transcripts by comprehensive RNA-Seq of horn cancer transcriptome in Bos indicus
Q36500802	Identification of novel noncoding transcripts in telomerase-negative yeast using RNA-seq.
Q30749239	Identification of novel point mutations in splicing sites integrating whole-exome and RNA-seq data in myeloproliferative diseases
Q55502690	Identification of novel point mutations in splicing sites integrating whole-exome and RNA-seq data in myeloproliferative diseases.
Q42773434	Identification of novel splice variants in horn cancer by RNA-Seq analysis in Zebu cattle
Q36195357	Identification of novel targets of diabetic nephropathy and PEDF peptide treatment using RNA-seq
Q38495876	Identification of novel transcripts deregulated in buccal cancer by RNA-seq.
Q46596669	Identification of novel transcripts in annotated genomes using RNA-Seq
Q55560166	Identification of novel ΔNp63α-regulated miRNAs using an optimized small RNA-Seq analysis pipeline.
Q36255074	Identification of nuclear genes controlling chlorophyll synthesis in barley by RNA-seq
Q89341600	Identification of open chromosomal regions and key genes in prostate cancer via integrated analysis of DNase‑seq and RNA‑seq data
Q100513992	Identification of potential QTLs and genes associated with seed composition traits in peanut (Arachis hypogaea L.) using GWAS and RNA-Seq analysis
Q92411449	Identification of potential functional variants underlying ovine resistance to gastrointestinal nematode infection by using RNA-Seq
Q36194313	Identification of potential genes for human ischemic cardiomyopathy based on RNA-Seq data
Q52608493	Identification of potential key genes and high-frequency mutant genes in prostate cancer by using RNA-Seq data.
Q64970940	Identification of potential target genes of USP22 via ChIP-seq and RNA-seq analysis in HeLa cells.
Q91754895	Identification of prognosis markers for endometrial cancer by integrated analysis of DNA methylation and RNA-Seq data
Q36297470	Identification of prognostic genes in kidney renal clear cell carcinoma by RNA‑seq data analysis
Q47969817	Identification of prostate cancer LncRNAs by RNA-Seq
Q38456552	Identification of putative odorant binding protein genes in Asecodes hispinarum, a parasitoid of coconut leaf beetle (Brontispa longissima) by antennal RNA-Seq analysis
Q42774569	Identification of reference genes for qRT-PCR in human lung squamous-cell carcinoma by RNA-Seq.
Q31067278	Identification of reference genes for quantitative expression analysis using large-scale RNA-seq data of Arabidopsis thaliana and model crop plants
Q35106435	Identification of serum microRNA biomarkers for tuberculosis using RNA-seq
Q34329398	Identification of somatic mutations in human prostate cancer by RNA-Seq
Q46943241	Identification of species-specific novel transcripts in pig reproductive tissues using RNA-seq
Q64059563	Identification of stable QTLs and candidate genes involved in anaerobic germination tolerance in rice via high-density genetic mapping and RNA-Seq
Q30929193	Identification of stage-specific biomarkers in lung adenocarcinoma based on RNA-seq data
Q92856562	Identification of the Molecular Events Involved in the Development of Prefrontal Cortex Through the Analysis of RNA-Seq Data From BrainSpan
Q64914718	Identification of the Pathogenic Biomarkers for Hepatocellular Carcinoma Based on RNA-seq Analyses.
Q46387900	Identification of the abiotic stress-related transcription in little Neptune grass Cymodocea nodosa with RNA-seq.
Q37667346	Identification of the involvement of LOXL4 in generation of keratocystic odontogenic tumors by RNA-Seq analysis
Q42335703	Identification of the miRNA-mRNA regulatory network of small cell osteosarcoma based on RNA-seq
Q93119660	Identification of the potential key genes for adipogenesis from human mesenchymal stem cells by RNA-Seq
Q58575985	Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq
Q89513758	Identification of transcriptome and fluralaner responsive genes in the common cutworm Spodoptera litura Fabricius, based on RNA-seq
Q100312001	Identification of transcriptome differences in goat ovaries at the follicular phase and the luteal phase using an RNA-Seq method
Q36040949	Identification of transcripts regulated by CUG-BP, Elav-like family member 1 (CELF1) in primary embryonic cardiomyocytes by RNA-seq
Q57468098	Identification of triterpene biosynthetic genes from Momordica charantia using RNA-seq analysis
Q35065421	Identification of two putative reference genes from grapevine suitable for gene expression analysis in berry and related tissues derived from RNA-Seq data
Q55175613	Identification of usual interstitial pneumonia pattern using RNA-Seq and machine learning: challenges and solutions.
Q113273514	Identification of viral transcripts in RNA-seq datasets from bees, ants, wasps and mites
Q42375276	Identify Huntington's disease associated genes based on restricted Boltzmann machine with RNA-seq data.
Q36347054	Identifying Abundant Immunotherapy and Other Targets in Solid Tumors: Integrating RNA-seq and Mass Spectrometry Proteomics Data Sets
Q112727924	Identifying Candidate Genes Involved in the Regulation of Early Growth Using Full-Length Transcriptome and RNA-Seq Analyses of Frontal and Parietal Bones and Vertebral Bones in Bighead Carp (Hypophthalmichthys nobilis)
Q89882469	Identifying IGH disease clones for MRD monitoring in childhood B-cell acute lymphoblastic leukemia using RNA-Seq
Q45943794	Identifying and analyzing different cancer subtypes using RNA-seq data of blood platelets.
Q64073928	Identifying and exploiting gene-pathway interactions from RNA-seq data for binary phenotype
Q104500306	Identifying circRNA- and lncRNA-associated-ceRNA networks in the hippocampi of rats exposed to PM_2.5 using RNA-seq analysis
Q58092059	Identifying deer antler uhrf1 proliferation and s100a10 mineralization genes using comparative RNA-seq
Q42775643	Identifying differential expression genes and single nucleotide variations using RNA-seq in metastatic melanoma
Q34259456	Identifying differentially expressed transcripts from RNA-seq data with biological variation
Q85642812	Identifying differentially spliced genes from two groups of RNA-seq samples
Q40103948	Identifying host pathogenic pathways in bovine digital dermatitis by RNA-Seq analysis
Q91198609	Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data
Q46908069	Identifying mRNA editing deaminase targets by RNA-Seq
Q64892541	Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus.
Q30000290	Identifying stably expressed genes from multiple RNA-Seq data sets
Q92159505	Identifying suitable tools for variant detection and differential gene expression using RNA-seq data
Q33678796	Identifying the Genes Responsible for Iron-Limited Condition in Riemerella anatipestifer CH-1 through RNA-Seq-Based Analysis
Q60956228	Identifying the Growth Factors for Improving Neointestinal Regeneration in Rats through Transcriptome Analysis Using RNA-Seq Data
Q37415546	Identiﬁcation of Differentially Expressed Genes in Pelvic Organ Prolapse by RNA-Seq.
Q39131954	If it transcribes, we can sequence it: mining the complexities of host-pathogen-environment interactions using RNA-seq
Q93003205	Immune and environment-driven gene expression during invasion: An eco-immunological application of RNA-Seq
Q35377918	Immunoglobulin transcript sequence and somatic hypermutation computation from unselected RNA-seq reads in chronic lymphocytic leukemia
Q96033478	Immunohistochemical analysis of SLFN11 expression uncovers potential non-responders to DNA-damaging agents overlooked by tissue RNA-seq
Q112710432	Immunopeptidogenomics: Harnessing RNA-Seq to Illuminate the Dark Immunopeptidome
Q36169758	Impact of RNA degradation on fusion detection by RNA-seq
Q35057984	Impact of RNA-seq attributes on false positive rates in differential expression analysis of de novo assembled transcriptomes
Q100761924	Impact of RNA-seq data analysis algorithms on gene expression estimation and downstream prediction
Q104563715	Impact of Sequencing Depth and Library Preparation on Toxicological Interpretation of RNA-Seq Data in a "Three-Sample" Scenario
Q112638619	Impact of gene annotation choice on the quantification of RNA-seq data
Q30663457	Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol
Q92131566	Impact of sequencing depth and technology on de novo RNA-Seq assembly
Q91247840	Improved RNA-seq Workflows Using CyVerse Cyberinfrastructure
Q35145066	Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs.
Q64063239	Improved annotation of the domestic pig genome through integration of Iso-Seq and RNA-seq data
Q94451616	Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads
Q99557289	Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets
Q34569594	Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information.
Q112643110	Improved prediction of smoking status via isoform-aware RNA-seq deep learning models
Q34974650	Improved rat genome gene prediction by integration of ESTs with RNA-Seq information
Q34194405	Improved structural annotation of protein-coding genes in the Meloidogyne hapla genome using RNA-Seq
Q43443773	Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations.
Q91748946	Improvement of detection performance of fusion genes from RNA-seq data by clustering short reads
Q36363939	Improvement of genome assembly completeness and identification of novel full-length protein-coding genes by RNA-seq in the giant panda genome.
Q57183699	Improvements to the rice genome annotation through large-scale analysis of RNA-Seq and proteomics datasets
Q31141658	Improving Gene-Set Enrichment Analysis of RNA-Seq Data with Small Replicates
Q35863944	Improving RNA-Seq Precision with MapAl
Q33848556	Improving RNA-Seq expression estimates by correcting for fragment bias
Q35811068	Improving RNA-Seq expression estimation by modeling isoform- and exon-specific read sequencing rate
Q90364752	Improving Small RNA-seq: Less Bias and Better Detection of 2'-O-Methyl RNAs
Q30763070	Improving reliability and absolute quantification of human brain microarray data by filtering and scaling probes using RNA-Seq
Q30931084	Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization
Q30000022	Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data
Q31122249	Improving the Flexibility of RNA-Seq Data Analysis Pipelines
Q55084993	Improving the value of public RNA-seq expression data by phenotype prediction.
Q37260431	In Papyro Comparison of TMM (edgeR), RLE (DESeq2), and MRN Normalization Methods for a Simple Two-Conditions-Without-Replicates RNA-Seq Experimental Design
Q38869589	In Silico HLA Typing Using Standard RNA-Seq Sequence Reads
Q88956404	In Silico Typing of Classical and Non-classical HLA Alleles from Standard RNA-Seq Reads
Q36276973	In Silico identification and annotation of non-coding RNAs by RNA-seq and De Novo assembly of the transcriptome of Tomato Fruits
Q89805780	In Vitro Zika Virus Infection of Human Neural Progenitor Cells: Meta-Analysis of RNA-Seq Assays
Q40230547	In planta Identification of Putative Pathogenicity Factors from the Chickpea Pathogen Ascochyta rabiei by De novo Transcriptome Sequencing Using RNA-Seq and Massive Analysis of cDNA Ends
Q39224699	In silico RNA-seq and experimental analyses reveal the differential expression and splicing of EPDR1 and ZNF518B genes in relation to KRAS mutations in colorectal cancer cells.
Q91752600	In silico analysis of RNA-seq requires a more complete description of methodology
Q31043319	In silico prediction of the G-protein coupled receptors expressed during the metamorphic molt of Sagmariasus verreauxi (Crustacea: Decapoda) by mining transcriptomic data: RNA-seq to repertoire
Q50198135	In vitro RNA-seq-based toxicogenomics assessment shows reduced biological effect of tobacco heating products when compared to cigarette smoke.
Q96171896	In vivo dual RNA-seq reveals that neutrophil recruitment underlies differential tissue tropism of Streptococcus pneumoniae
Q35791938	In-Depth Duodenal Transcriptome Survey in Chickens with Divergent Feed Efficiency Using RNA-Seq
Q98166770	Incomplete removal of ribosomal RNA can affect chromatin RNA-seq data analysis
Q104746127	Incorporating RNA-Seq Transcriptomics into Glycosylation-integrating Metabolic Network Modelling Kinetics: Multiomic Chinese Hamster Ovary (CHO) Cell Bioreactors
Q34338283	Incorporating RNA-seq data into the zebrafish Ensembl genebuild
Q100391665	Increased comparability between RNA-Seq and microarray data by utilization of gene sets
Q35397879	Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples.
Q36089979	Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations.
Q38675595	Independent Component Analysis (ICA) based-clustering of temporal RNA-seq data
Q35903338	Induction of Viable but Nonculturable State in Rhodococcus and Transcriptome Analysis Using RNA-seq
Q91358758	Infection and RNA-seq analysis of a zebrafish tlr2 mutant shows a broad function of this toll-like receptor in transcriptional and metabolic control and defense to Mycobacterium marinum infection
Q30745344	Inference of allele-specific expression from RNA-seq data.
Q30654746	Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs
Q27316733	Inferential considerations for low-count RNA-seq transcripts: a case study on the dominant prairie grass Andropogon gerardii
Q35131877	Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms
Q36120282	Inferring metabolic pathway activity levels from RNA-Seq data.
Q35036788	Inferring polymorphism-induced regulatory gene networks active in human lymphocyte cell lines by weighted linear mixed model analysis of multiple RNA-Seq datasets
Q30842108	Influence of RNA extraction methods and library selection schemes on RNA-seq data
Q46262342	Innate Cell-Mediated Cytotoxic Activity of European Sea Bass Leucocytes Against Nodavirus-Infected Cells: A Functional and RNA-seq Study
Q28554929	Insecticidal Activity of Melaleuca alternifolia Essential Oil and RNA-Seq Analysis of Sitophilus zeamais Transcriptome in Response to Oil Fumigation
Q42774001	Insight into norfloxacin resistance of Acinetobacter oleivorans DR1: target gene mutation, persister, and RNA-Seq analyses
Q110711184	Insight to new genes with sex‐biased to bony‐tongued fishes: Differentially expressed genes in adult individuals of Arapaima gigas revealed by RNA‐Seq
Q42146716	Insights into Chinese prostate cancer with RNA-seq
Q40294338	Insights into Dynamic Polymicrobial Synergy Revealed by Time-Coursed RNA-Seq
Q113337526	Insights into Regulation of C2 and C4 Photosynthesis in Amaranthaceae/Chenopodiaceae Using RNA-Seq
Q53694315	Insights into aluminum-tolerance pathways in Stylosanthes as revealed by RNA-Seq analysis.
Q42377204	Insights into grapevine defense response against drought as revealed by biochemical, physiological and RNA-Seq analysis
Q34736396	Insights into organ-specific pathogen defense responses in plants: RNA-seq analysis of potato tuber-Phytophthora infestans interactions
Q36159713	Insights into the adaptive response of Arabidopsis thaliana to prolonged thermal stress by ribosomal profiling and RNA-Seq
Q89998746	Insights into the chicken bursa of fabricius response to Newcastle disease virus at 48 and 72 hours post-infection through RNA-seq
Q92553108	Insights into transcriptional characteristics and homoeolog expression bias of embryo and de-embryonated kernels in developing grain through RNA-Seq and Iso-Seq
Q100444056	IntAPT: Integrated assembly of phenotype-specific transcripts from multiple RNA-seq profiles
Q112292664	Integrated Analysis of Microarray and RNA-Seq Data for the Identification of Hub Genes and Networks Involved in the Pancreatic Cancer
Q112636404	Integrated COVID-19 Predictor: Differential expression analysis to reveal potential biomarkers and prediction of coronavirus using RNA-Seq profile data
Q92986972	Integrated Chip-Seq and RNA-Seq Data Analysis Coupled with Bioinformatics Approaches to Investigate Regulatory Landscape of Transcription Modulators in Breast Cancer Cells
Q112645508	Integrated RNA-Seq Analysis Uncovers the Potential Mechanism of the "Kidney Governing Bones" Theory of TCM
Q96947155	Integrated RNA-Seq Analysis and Meta-QTLs Mapping Provide Insights into Cold Stress Response in Rice Seedling Roots
Q35527047	Integrated RNA-Seq and sRNA-Seq Analysis Identifies Chilling and Freezing Responsive Key Molecular Players and Pathways in Tea Plant (Camellia sinensis).
Q99549314	Integrated RNA-seq Analysis Indicates Asynchrony in Clock Genes between Tissues under Spaceflight
Q91043438	Integrated RNA-seq and ChIP-seq analysis reveals a feed-forward loop regulating H3K9ac and key labor drivers in human placenta
Q36246637	Integrated RNA-seq and DNase-seq analyses identify phenotype-specific BMP4 signaling in breast cancer.
Q104563923	Integrated RNA-seq and Proteomic Studies Reveal Resource Reallocation towards Energy Metabolism and Defense in Skeletonema marinoi in Response to CO₂ Increase
Q35015781	Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
Q38816975	Integrated RNA-seq and sRNA-seq analysis reveals miRNA effects on secondary metabolism in Solanum tuberosum L.
Q90255278	Integrated Transcriptome Analysis of microRNA and mRNA in Mouse Skin Derived Precursors (SKPs) and SKP Derived Fibroblast (SFBs) by RNA-Seq
Q30000092	Integrated analyses using RNA-Seq data reveal viral genomes, single nucleotide variations, the phylogenetic relationship, and recombination for Apple stem grooving virus
Q92179509	Integrated analysis of RNA-seq and microRNA-seq depicts miRNA-mRNA networks involved in stripe patterns of Botia superciliaris skin
Q96431666	Integrated analysis of a compendium of RNA-Seq datasets for splicing factors
Q56999072	Integrated analysis of dysregulated lncRNA expression in breast cancer cell identified by RNA-seq study
Q112278118	Integrated analysis of lncRNAs and mRNAs by RNA-Seq in secondary hair follicle development and cycling (anagen, catagen and telogen) of Jiangnan cashmere goat (Capra hircus)
Q50095859	Integrated analysis of the RNA-Seq data of liver hepatocellular carcinoma.
Q42692999	Integrated analysis of whole-genome ChIP-Seq and RNA-Seq data of primary head and neck tumor samples associates HPV integration sites with open chromatin marks
Q31140838	Integrated computational approach to the analysis of RNA-seq data reveals new transcriptional regulators of psoriasis.
Q91165837	Integrated dual RNA-seq and dual iTRAQ of infected tissue reveals the functions of a diguanylate cyclase gene of Pseudomonas plecoglossicida in host-pathogen interactions with Epinephelus coioides
Q30885622	Integrated modeling of protein-coding genes in the Manduca sexta genome using RNA-Seq data from the biochemical model insect
Q112717090	Integrated protocol for exitron and exitron-derived neoantigen identification using human RNA-seq data with ScanExitron and ScanNeo
Q99607507	Integrated sRNAome and RNA-Seq analysis reveals miRNA effects on betalain biosynthesis in pitaya
Q91750411	Integrating Bacterial ChIP-seq and RNA-seq Data With SnakeChunks
Q97586603	Integrating RNA-Seq with GWAS reveals novel insights into the molecular mechanism underpinning ketosis in cattle
Q31057172	Integrating RNA-seq and ChIP-seq data to characterize long non-coding RNAs in Drosophila melanogaster
Q64977852	Integrating RNA-seq and GWAS reveals novel genetic mutations for buffalo reproductive traits.
Q37728376	Integrating Sequence-based GWAS and RNA-Seq Provides Novel Insights into the Genetic Basis of Mastitis and Milk Production in Dairy Cattle
Q101240993	Integration analysis of PacBio SMRT- and Illumina RNA-seq reveals candidate genes and pathway involved in selenium metabolism in hyperaccumulator Cardamine violifolia
Q92326823	Integration of ATAC-Seq and RNA-Seq Identifies Key Genes in Light-Induced Primordia Formation of Sparassis latifolia
Q92123252	Integration of ATAC-seq and RNA-seq Unravels Chromatin Accessibility during Sex Reversal in Orange-Spotted Grouper (Epinephelus coioides)
Q38668145	Integration of ATAC-seq and RNA-seq identifies human alpha cell and beta cell signature genes
Q90290943	Integration of Cross Species RNA-seq Meta-Analysis and Machine-Learning Models Identifies the Most Important Salt Stress-Responsive Pathways in Microalga Dunaliella
Q42777565	Integration of RNA-Seq and RPPA data for survival time prediction in cancer patients.
Q112609944	Integration of RNA-Seq and proteomics data identifies glioblastoma multiforme surfaceome signature
Q47094727	Integration of RNA-Seq data with heterogeneous microarray data for breast cancer profiling
Q114246956	Integration of RNA-seq and ATAC-seq identifies muscle-regulated hub genes in cattle
Q97521488	Integration of RNA-seq and RNAi provides a novel insight into the immune responses of Epinephelus coioides to the impB gene of Pseudomonas plecoglossicida
Q35685565	Integration of RNA-seq and proteomics data with genomics for improved genome annotation in Apicomplexan parasites.
Q90650328	Integration of RNAi and RNA-seq Reveals the Immune Responses of Epinephelus coioides to sigX Gene of Pseudomonas plecoglossicida
Q90073455	Integration of RNAi and RNA-seq uncovers the immune responses of Epinephelus coioides to L321_RS19110 gene of Pseudomonas plecoglossicida
Q34115338	Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm
Q30863718	Integration of mass spectrometry and RNA-Seq data to confirm human ab initio predicted genes and lncRNAs
Q31121966	Integration of multimodal RNA-seq data for prediction of kidney cancer survival
Q33795797	Integration of quantitated expression estimates from polyA-selected and rRNA-depleted RNA-seq libraries
Q112608184	Integration of scRNA-Seq and Bulk RNA-Seq to Analyse the Heterogeneity of Ovarian Cancer Immune Cells and Establish a Molecular Risk Model
Q112635879	Integration of scRNA-Seq and TCGA RNA-Seq to Analyze the Heterogeneity of HPV+ and HPV- Cervical Cancer Immune Cells and Establish Molecular Risk Models
Q112715146	Integrative ATAC-seq and RNA-seq Analysis of the Longissimus Muscle of Luchuan and Duroc Pigs
Q31111803	Integrative Analysis of Histone ChIP-seq and RNA-seq Data
Q64102062	Integrative Differential Expression Analysis for Multiple EXperiments (IDEAMEX): A Web Server Tool for Integrated RNA-Seq Data Analysis
Q30824606	Integrative RNA-seq and microarray data analysis reveals GC content and gene length biases in the psoriasis transcriptome
Q112287466	Integrative analysis of Iso-Seq and RNA-seq data reveals transcriptome complexity and differentially expressed transcripts in sheep tail fat
Q42767121	Integrative analysis of many RNA-seq datasets to study alternative splicing
Q37148607	Integrative analysis with ChIP-seq advances the limits of transcript quantification from RNA-seq
Q46066745	Integrative approach involving RNA-Seq, foliar traits and growth measurements revealed genotype-specific plasticity on Eucalyptus subjected to seasonal water shortage
Q48262750	Integrative approach using liver and duodenum RNA-Seq data identifies candidate genes and pathways associated with feed efficiency in pigs.
Q35233809	Integrative structural annotation of de novo RNA-Seq provides an accurate reference gene set of the enormous genome of the onion (Allium cepa L.).
Q98303711	Integrative, normalization-insusceptible statistical analysis of RNA-Seq data, with improved differential expression and unbiased downstream functional analysis
Q33628731	Intergenic and repeat transcription in human, chimpanzee and macaque brains measured by RNA-Seq
Q90198230	Interoperable RNA-Seq analysis in the cloud
Q62838158	Interpretation of differential gene expression results of RNA-seq data: review and integration
Q30591197	Interpreting personal transcriptomes: personalized mechanism-scale profiling of RNA-seq data
Q112283284	Intersex goats show different gene expression levels in the hypothalamus and pituitary compared with non-intersex goats based on RNA-Seq
Q30985728	Interspecific Differential Expression Analysis of RNA-Seq Data Yields Insight into Life Cycle Variation in Hydractiniid Hydrozoans
Q35637254	Intracerebral Hemorrhage and Ischemic Stroke of Different Etiologies Have Distinct Alternatively Spliced mRNA Profiles in the Blood: a Pilot RNA-seq Study
Q94558711	Intravenous leiomyomatosis is inclined to a solid entity different from uterine leiomyoma based on RNA-seq analysis with RT-qPCR validation
Q100995833	Introducing differential RNA-seq mapping to track the early infection phase for Pseudomonas phage ɸKZ
Q38243630	Introduction to RNA-Seq and its applications to drug discovery and development
Q98177813	Intron Retention as a Mode for RNA-Seq Data Analysis
Q30578196	Intron-centric estimation of alternative splicing from RNA-seq data
Q41225227	Investigating CRISPR RNA Biogenesis and Function Using RNA-seq
Q112932074	Investigating a role for Fezf2 in the mature brain
Q42009886	Investigating host dependence of xylose utilization in recombinant Saccharomyces cerevisiae strains using RNA-seq analysis
Q90809799	Investigating the Influence of Glycerol on the Utilization of Glucose in Yarrowia lipolytica Using RNA-Seq-Based Transcriptomics
Q42778398	Investigating the underlying mechanism of Saccharomyces cerevisiae in response to ethanol stress employing RNA-seq analysis
Q28688452	Investigation into the physiologies of Aeromonas veronii in vitro and inside the digestive tract of the medicinal leech using RNA-seq
Q92712683	Investigation of Gene Expression and DNA Methylation From Seven Different Brain Regions of a Crab-Eating Monkey as Determined by RNA-Seq and Whole-Genome Bisulfite Sequencing
Q89944643	Investigation of a Novel Salt Stress-Responsive Pathway Mediated by Arabidopsis DEAD-Box RNA Helicase Gene AtRH17 Using RNA-Seq Analysis
Q41605455	Investigation of factors affecting RNA-seq gene expression calls
Q97590803	Investigation of genes associated with petal variations between diploid and autotetraploid in Chinese cabbage (Brassica rapa L. ssp. pekinensis) by RNA-seq and sRNA-seq
Q30724086	Investigation of key genes associated with prostate cancer using RNA-seq data
Q30776344	Investigation of key microRNAs associated with hepatocellular carcinoma using small RNA-seq data
Q38472573	Investigation of quorum sensing-dependent gene expression in Burkholderia gladioli BSR3 through RNA-seq analyses
Q34637764	Investigation of radiation-induced transcriptome profile of radioresistant non-small cell lung cancer A549 cells using RNA-seq
Q91048588	Investigation of the genes associated with a male sterility mutant (msm) in Chinese cabbage (Brassica campestris ssp. pekinensis) using RNA-Seq
Q61815754	Ion Torrent and lllumina, two complementary RNA-seq platforms for constructing the holm oak (Quercus ilex) transcriptome
Q39106539	IsoLasso: a LASSO regression approach to RNA-Seq based transcriptome assembly
Q89559745	IsoTree: A New Framework for De novo Transcriptome Assembly from RNA-seq Reads
Q42779330	Isoform abundance inference provides a more accurate estimation of gene expression levels in RNA-seq
Q21134805	Isoform diversity and regulation in peripheral and central neurons revealed through RNA-Seq
Q56983881	Isoform-Level Interpretation of High-Throughput Proteomics Data Enabled by Deep Integration with RNA-seq
Q34947224	Isoform-level microRNA-155 target prediction using RNA-seq
Q46624617	Isolation and characterization of polymorphic microsatellite markers in Bagarius yarrelli using RNA-Seq
Q63440031	Isolation of Nuclei in Tagged Cell Types (INTACT), RNA Extraction and Ribosomal RNA Degradation to Prepare Material for RNA-Seq
Q61446130	Isolation of blue-green eggshell pigmentation-related genes from Putian duck through RNA-seq
Q47340900	Isolation of mammalian stress granule cores for RNA-Seq analysis
Q41588101	Isolation of ripening-related genes from ethylene/1-MCP treated papaya through RNA-seq
Q112639744	IsomiR_Window: a system for analyzing small-RNA-seq data in an integrative and user-friendly manner
Q38949391	Issues with RNA-seq analysis in non-model organisms: A salmonid example.
Q38449509	It's DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR.
Q34043149	Itch-associated peptides: RNA-Seq and bioinformatic analysis of natriuretic precursor peptide B and gastrin releasing peptide in dorsal root and trigeminal ganglia, and the spinal cord
Q35213225	JAGuaR: junction alignments to genome for RNA-seq reads
Q42778056	Johne's disease in cattle: an in vitro model to study early response to infection of Mycobacterium avium subsp. paratuberculosis using RNA-seq
Q92455076	Joint RNA-Seq and miRNA Profiling Analyses to Reveal Molecular Mechanisms in Regulating Thickness of Pod Canopy in Brassica napus
Q30708524	Joint estimation of isoform expression and isoform-specific read distribution using multisample RNA-Seq data.
Q91747471	Joint modeling of eQTLs and parent-of-origin effects using an orthogonal framework with RNA-seq data
Q34969002	Jumping and gliding rodents: mitogenomic affinities of Pedetidae and Anomaluridae deduced from an RNA-Seq approach
Q99630531	Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive
Q34248238	KISSPLICE: de-novo calling alternative splicing events from RNA-seq data
Q31153200	Key Genes in Stomach Adenocarcinoma Identified via Network Analysis of RNA-Seq Data
Q61816592	Key role of SMN/SYNCRIP and RNA-Motif 7 in spinal muscular atrophy: RNA-Seq and motif analysis of human motor neurons
Q64236193	Key role of SMN/SYNCRIP and RNA-Motif 7 in spinal muscular atrophy: RNA-Seq and motif analysis of human motor neurons
Q112720539	Kmerator Suite: design of specific k-mer signatures and automatic metadata discovery in large RNA-seq datasets
Q30882831	LFCseq: a nonparametric approach for differential expression analysis of RNA-seq data
Q91820603	LIONS: analysis suite for detecting and quantifying transposable element initiated transcription from RNA-seq
Q42061133	LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq
Q112608850	Label propagation-based semi-supervised feature selection on decoding clinical phenotypes with RNA-seq data
Q37123281	Landscape of DNA virus associations across human malignant cancers: analysis of 3,775 cases using RNA-Seq
Q112717285	Landscape of the Dark Transcriptome Revealed Through Re-mining Massive RNA-Seq Data
Q93097345	Large scale maximum average power multiple inference on time-course count data with application to RNA-seq analysis
Q55221850	Large-Scale Comparative Analysis of Eugenol-Induced/Repressed Genes Expression in Aspergillus flavus Using RNA-seq.
Q40622697	Large-scale RNA-Seq Transcriptome Analysis of 4043 Cancers and 548 Normal Tissue Controls across 12 TCGA Cancer Types.
Q98568291	Large-scale discovery of male reproductive tract-specific genes through analysis of RNA-seq datasets
Q64991376	Laser Capture Microdissection and RNA-Seq Analysis: High Sensitivity Approaches to Explain Histopathological Heterogeneity in Human Glioblastoma FFPE Archived Tissues.
Q49979618	Laser Capture Microdissection-Based RNA-Seq of Barley Grain Tissues.
Q34783015	Laser microdissection coupled with RNA-seq analysis of porcine enterocytes infected with an obligate intracellular pathogen (Lawsonia intracellularis).
Q36350608	Laser microdissection coupled with RNA-seq reveal cell-type and disease-specific markers in the salivary gland of Sjögren's syndrome patients
Q42778055	Laser-Capture Microdissection of Maize Kernel Compartments for RNA-Seq-Based Expression Analysis
Q64062913	Lasy-Seq: a high-throughput library preparation method for RNA-Seq and its application in the analysis of plant responses to fluctuating temperatures
Q31142196	LbCML38 and LbRH52, two reference genes derived from RNA-Seq data suitable for assessing gene expression in Lycium barbarum L
Q30140950	Lemna minor plants chronically exposed to ionising radiation: RNA-seq analysis indicates a dose rate dependent shift from acclimation to survival strategies
Q33798902	Length bias correction for RNA-seq data in gene set analyses
Q64238382	Leukemia multiclass assessment and classification from Microarray and RNA-seq technologies integration at gene expression level
Q90026865	Leveraging RNA-Seq to Characterize Resistance to Brown Stem Rot and the Rbs3 Locus in Soybean
Q27490945	Leveraging skewed transcript abundance by RNA-Seq to increase the genomic depth of the tree of life
Q30855943	Leveraging the complementary nature of RNA-Seq and shotgun proteomics data
Q35570121	Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and histochemistry.
Q99571162	Limitations of Detecting Genetic Variants from the RNA-Seq Data in Tissue and FNA Samples
Q56395656	Limitations of alignment-free tools in total RNA-seq quantification
Q47175346	Lingguizhugan decoction improves non-alcoholic fatty liver disease by altering insulin resistance and lipid metabolism related genes: a whole trancriptome study by RNA-Seq
Q99213939	Lipid Stores and Lipid Metabolism Associated Gene Expression in Porcine and Bovine Parthenogenetic Embryos Revealed by Fluorescent Staining and RNA-seq
Q33683778	Lipidomics and RNA-Seq Study of Lipid Regulation in Aphis gossypii parasitized by Lysiphlebia japonica
Q103832065	Liver Expression of IGF2 and Related Proteins in ZBED6 Gene-Edited Pig by RNA-Seq
Q35954097	Liver Transcriptome Analysis of the Large Yellow Croaker (Larimichthys crocea) during Fasting by Using RNA-Seq
Q102221108	Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data
Q90589599	LncPipe: A Nextflow-based pipeline for identification and analysis of long non-coding RNAs from RNA-Seq data
Q91326436	LncRNA SNHG8 is identified as a key regulator of acute myocardial infarction by RNA-seq analysis
Q30898138	LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data
Q40088946	Local sequence and sequencing depth dependent accuracy of RNA-seq reads
Q31151054	Logic programming to infer complex RNA expression patterns from RNA-seq data
Q33988959	Long intergenic non-coding RNAs (LincRNAs) identified by RNA-seq in breast cancer
Q113558021	Long non-coding RNAs identification and annotation in Schistosoma mansoni and Schistosoma japonicum
Q64996378	Long non-coding and coding RNA profiling using strand-specific RNA-seq in human hypertrophic cardiomyopathy.
Q50097400	Long-Term Room Temperature Storage of Dry Ribonucleic Acid for Use in RNA-Seq Analysis.
Q46508944	Longer Reads Do Not Significantly Improve RNA-seq Results
Q40691424	Longitudinal RNA-Seq Analysis of Vertebrate Aging Identifies Mitochondrial Complex I as a Small-Molecule-Sensitive Modifier of Lifespan.
Q92090814	Longitudinal RNA-Seq Analysis of the Repeatability of Gene Expression and Splicing in Human Platelets Identifies a Platelet SELP Splice QTL
Q90261652	Longitudinal RNA-Seq analysis of acute and chronic neurogenic skeletal muscle atrophy
Q100687493	Low RIN Value for RNA-Seq Library Construction from Long-Term Stored Seeds: A Case Study of Barley Seeds
Q33682001	Low-cost, Low-bias and Low-input RNA-seq with High Experimental Verifiability based on Semiconductor Sequencing
Q35592837	Low-cost, low-input RNA-seq protocols perform nearly as well as high-input protocols
Q47610131	MAJIQ-SPEL: Web-tool to interrogate classical and complex splicing variations from RNA-Seq data
Q34135283	MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data
Q30607845	MCMC implementation of the optimal Bayesian classifier for non-Gaussian models: model-based RNA-Seq classification
Q34248208	MGMR: leveraging RNA-Seq population data to optimize expression estimation
Q36392246	MIDAS: Mining differentially activated subpaths of KEGG pathways from multi-class RNA-seq data
Q112653617	MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq data
Q31164134	MINTmap: fast and exhaustive profiling of nuclear and mitochondrial tRNA fragments from short RNA-seq data.
Q34974745	MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
Q90062871	MIXnorm: Normalizing RNA-seq Data from Formalin-Fixed Paraffin-Embedded Samples
Q39487708	MMAPPR: mutation mapping analysis pipeline for pooled RNA-seq
Q55080875	MSIQ: JOINT MODELING OF MULTIPLE RNA-SEQ SAMPLES FOR ACCURATE ISOFORM QUANTIFICATION.
Q112609795	MUREN: a robust and multi-reference approach of RNA-seq transcript normalization
Q94562596	MaREA4Galaxy: Metabolic reaction enrichment analysis and visualization of RNA-seq data within Galaxy
Q112283479	Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection
Q92180031	Magic-BLAST, an accurate RNA-seq aligner for long and short reads
Q93081413	Magnesium Deficiency Induced Global Transcriptome Change in Citrus sinensis Leaves Revealed by RNA-Seq
Q31166519	Making the most of RNA-seq: Pre-processing sequencing data with Opossum for reliable SNP variant detection.
Q34848752	Male-biased genes in catfish as revealed by RNA-Seq analysis of the testis transcriptome
Q34189334	MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.
Q33457722	Mapping 3' transcript ends in the bank vole (Clethrionomys glareolus) mitochondrial genome with RNA-Seq
Q90738205	Mapping RNA splicing variations in clinically accessible and nonaccessible tissues to facilitate Mendelian disease diagnosis using RNA-seq
Q28081806	Mapping RNA-seq Reads with STAR
Q91441655	Mapping RNA-seq reads to transcriptomes efficiently based on learning to hash method
Q86858193	Mapping Splicing Quantitative Trait Loci in RNA-Seq
Q34444821	Mapping Splicing Quantitative Trait Loci in RNA-Seq.
Q38654086	Mapping Transcription Regulatory Networks with ChIP-seq and RNA-seq.
Q47554575	Mapping and Identifying a Candidate Gene (Bnmfs) for Female-Male Sterility through Whole-Genome Resequencing and RNA-Seq in Rapeseed (Brassica napus L.).
Q92870906	Mapping and identification of potential target genes from short-RNA seq for the control of Pieris rapae larvae
Q22122035	Mapping and quantifying mammalian transcriptomes by RNA-Seq
Q33614670	Mapping eQTLs with RNA-seq reveals novel susceptibility genes, non-coding RNAs and alternative-splicing events in systemic lupus erythematosus
Q64992550	Mapping gastrointestinal gene expression patterns in wild primates and humans via fecal RNA-seq.
Q113746376	Mapping of promoter usage QTL using RNA-seq data reveals their contributions to complex traits
Q42777094	Mapping stripe rust resistance gene YrZH22 in Chinese wheat cultivar Zhoumai 22 by bulked segregant RNA-Seq (BSR-Seq) and comparative genomics analyses
Q30631723	Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data.
Q38454712	Mapping the osteocytic cell response to fluid flow using RNA-Seq
Q36332152	Marginal likelihood estimation of negative binomial parameters with applications to RNA-seq data
Q33838345	Marker-Assisted Molecular Profiling, Deletion Mutant Analysis, and RNA-Seq Reveal a Disease Resistance Cluster Associated with Uromyces appendiculatus Infection in Common Bean Phaseolus vulgaris L.
Q52595418	Massive mining of publicly available RNA-seq data from human and mouse.
Q33886396	Massive-scale RNA-Seq analysis of non ribosomal transcriptome in human trisomy 21.
Q90241687	Massively parallel RNA device engineering in mammalian cells with RNA-Seq
Q36889782	Massively parallel sequencing, aCGH, and RNA-Seq technologies provide a comprehensive molecular diagnosis of Fanconi anemia.
Q38372101	Massively parallel single-nucleus RNA-seq with DroNc-seq
Q90248421	Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data
Q31042760	Measure transcript integrity using RNA-seq data
Q34370509	Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples
Q42776217	Measuring Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NF-κB Activation.
Q30853974	Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis
Q31144492	Measuring intratumor heterogeneity by network entropy using RNA-seq data
Q42775899	Mechanisms of colitis-accelerated colon carcinogenesis and its prevention with the combination of aspirin and curcumin: Transcriptomic analysis using RNA-seq.
Q42007147	Mechanisms of macroevolution: polyphagous plasticity in butterfly larvae revealed by RNA-Seq
Q92224661	Mechanistic insight into the roles of Pseudomonas plecoglossicida clpV gene in host-pathogen interactions with Larimichthys crocea by dual RNA-seq
Q114210917	Mechanistic insights into HuR inhibitor MS-444 arresting embryonic development revealed by low-input RNA-seq and STORM
Q39679999	Mechanistic underpinnings of dehydration stress in the American dog tick revealed through RNA-Seq and metabolomics
Q33774678	Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes
Q50027416	Melonet-DB, a Grand RNA-Seq Gene Expression Atlas in Melon (Cucumis melo L.).
Q92704966	Meta-Analysis of Dilated Cardiomyopathy Using Cardiac RNA-Seq Transcriptomic Datasets
Q112276899	Meta-Analysis of Two Human RNA-seq Datasets to Determine Periodontitis Diagnostic Biomarkers and Drug Target Candidates
Q31033473	Meta-analysis of RNA-seq expression data across species, tissues and studies
Q91884612	Meta-analysis of mammary RNA seq datasets reveals the molecular understanding of bovine lactation biology
Q55510730	MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data.
Q42582083	MetaRNA-Seq: An Interactive Tool to Browse and Annotate Metadata from RNA-Seq Studies
Q43952666	Metabolic pathways and genes identified by RNA-seq analysis of barley near-isogenic lines differing by allelic state of the Black lemma and pericarp (Blp) gene.
Q92075515	Metabolism disruption analysis of zebrafish larvae in response to BPA and BPA analogs based on RNA-Seq technique
Q99604638	Metabolomic analysis of fibrotic mice combined with public RNA-seq human lung data reveal potential diagnostic biomarker candidates for lung fibrosis
Q33870403	Method for improved Illumina sequencing library preparation using NuGEN Ovation RNA-Seq System.
Q46468115	Methods for quantifying gene expression in ecoimmunology: from qPCR to RNA-Seq
Q30831286	Methods for time series analysis of RNA-seq data with application to human Th17 cell differentiation
Q45929791	Methods to detect transcribed pseudogenes: RNA-Seq discovery allows learning through features.
Q90113620	MiR&moRe2: A Bioinformatics Tool to Characterize microRNAs and microRNA-Offset RNAs from Small RNA-Seq Data
Q28679161	MicroRNA discovery by similarity search to a database of RNA-seq profiles
Q112721819	MicroRNAs Involved in Regulatory Cytoplasmic Male Sterility by Analysis RNA-seq and Small RNA-seq in Soybean
Q36141987	MicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps
Q33843926	Microarrays and RNA-Seq identify molecular mechanisms driving the end of nephron production
Q49970831	Microbial genetics: Dual RNA-seq for host-pathogen transcriptomics.
Q34145509	Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a
Q30665906	Mining RNA-seq data for infections and contaminations
Q91985809	Mining conditions specific hub genes from RNA-Seq gene-expression data via biclustering and their application to drug discovery
Q113901656	Mining of publicly available RNA-seq data to reveal phenotypic differences between Landsberg erecta-0 and Columbia-0 ecotypes in Arabidopsis thaliana
Q104501260	Mining the Unmapped Reads in Bovine RNA-Seq Data Reveals the Prevalence of Bovine Herpes Virus-6 in European Dairy Cows and the Associated Changes in Their Phenotype and Leucocyte Transcriptome
Q60185086	Mixed-species RNA-seq for elucidation of non-cell-autonomous control of gene transcription
Q36371998	Mixture models reveal multiple positional bias types in RNA-Seq data and lead to accurate transcript concentration estimates
Q30689025	Model-based clustering for RNA-seq data
Q36191168	Modeling Enzyme Processivity Reveals that RNA-Seq Libraries Are Biased in Characteristic and Correctable Ways
Q31003291	Modeling Exon-Specific Bias Distribution Improves the Analysis of RNA-Seq Data
Q36740961	Modeling RNA degradation for RNA-Seq with applications
Q30690326	Modeling alternative splicing variants from RNA-Seq data with isoform graphs
Q92922602	Modeling and analysis of RNA-seq data: a review from a statistical perspective
Q33575558	Modeling non-uniformity in short-read rates in RNA-Seq data
Q37482304	Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation.
Q92066492	Modelling RNA-Seq data with a zero-inflated mixture Poisson linear model
Q34409647	Modelling and simulating generic RNA-Seq experiments with the flux simulator
Q29547403	Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Q42706625	Modified RNA-seq method for microbial community and diversity analysis using rRNA in different types of environmental samples
Q112908253	Molecular Characterisation of Immune Genes in Yellowtail Kingfish (Seriola lalandi)
Q112908725	Molecular Characterisation of Sex Differentiation Genes in Yellowtail Kingfish (Seriola lalandi)
Q92135722	Molecular Mechanism Associated With the Impact of Methane/Oxygen Gas Supply Ratios on Cell Growth of Methylomicrobium buryatense 5GB1 Through RNA-Seq
Q101048492	Molecular Mechanisms Underlying Sugarcane Response to Aluminum Stress by RNA-Seq
Q55411543	Molecular and clinical characterization of PTPN2 expression from RNA-seq data of 996 brain gliomas.
Q64284486	Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data
Q112585533	Molecular evidence of the avocado defense response to Fusarium kuroshium infection: a deep transcriptome analysis using RNA-Seq
Q40392816	Molecular marker development and genetic diversity exploration by RNA-seq in Platycodon grandiflorum.
Q100996762	Molecular mechanisms for magnesium-deficiency-induced leaf vein lignification, enlargement and cracking in Citrus sinensis revealed by RNA-Seq
Q57210043	Molecular pathology of adverse local tissue reaction caused by metal-on-metal implants defined by RNA-seq
Q47817958	Molecular pathology of total knee arthroplasty instability defined by RNA-seq
Q92452361	Molecular regulation of adhesion and biofilm formation in high and low biofilm producers of Bacillus licheniformis using RNA-Seq
Q91195715	Molecular responses of an estuarine oyster to multiple metal contamination in Southern China revealed by RNA-seq
Q33792431	Molecular signatures of mouse TRPV1-lineage neurons revealed by RNA-Seq transcriptome analysis.
Q39045857	Morphological observation, RNA-Seq quantification, and expression profiling: novel insight into grafting-responsive carotenoid biosynthesis in watermelon grafted onto pumpkin rootstock
Q92973310	Mr.Vc: a database of microarray and RNA-seq of Vibrio cholerae
Q58797279	Mulberry Leaf Regulates Differentially Expressed Genes in Diabetic Mice Liver Based on RNA-Seq Analysis
Q33601127	Multi-class computational evolution: development, benchmark evaluation and application to RNA-Seq biomarker discovery
Q34204436	Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study.
Q90781345	Multi-strategic RNA-seq analysis reveals a high-resolution transcriptional landscape in cotton
Q42778229	Multi-time series RNA-seq analysis of Enterobacter lignolyticus SCF1 during growth in lignin-amended medium.
Q38429509	Multi-tissue RNA-seq and transcriptome characterisation of the spiny dogfish shark (Squalus acanthias) provides a molecular tool for biological research and reveals new genes involved in osmoregulation
Q112578190	MultiEditR: The first tool for the detection and quantification of RNA editing from Sanger sequencing demonstrates comparable fidelity to RNA-seq
Q33777976	Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome
Q36442922	Multiple functional linear model for association analysis of RNA-seq with imaging.
Q35109828	Multiplex analysis of polyA-linked sequences (MAPS): an RNA-seq strategy to profile poly(A+) RNA
Q33808133	Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids
Q92243192	Multiplexed primer extension sequencing: A targeted RNA-seq method that enables high-precision quantitation of mRNA splicing isoforms and rare pre-mRNA splicing intermediates
Q35974524	Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA
Q64095328	Mutational landscape of canine B-cell lymphoma profiled at single nucleotide resolution by RNA-seq
Q108899899	NASA GeneLab RNA-seq consensus pipeline: standardized processing of short-read RNA-seq data
Q31130296	NBLDA: negative binomial linear discriminant analysis for RNA-Seq data.
Q30883946	NGS-Trex: an automatic analysis workflow for RNA-Seq data
Q88568795	NGScloud: RNA-seq analysis of non-model species using cloud computing
Q31040461	NMFP: a non-negative matrix factorization based preselection method to increase accuracy of identifying mRNA isoforms from RNA-seq data
Q30663634	NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data
Q33901532	NSMAP: a method for spliced isoforms identification and quantification from RNA-Seq.
Q30654221	NURD: an implementation of a new method to estimate isoform expression from non-uniform RNA-seq data
Q39497886	NVT: a fast and simple tool for the assessment of RNA-seq normalization strategies
Q95834235	Naegleria fowleri: differential genetic expression following treatment with Hesperidin conjugated with silver nanoparticles using RNA-Seq
Q42777913	Nanobubble Water's Promotion Effect of Barley (Hordeum vulgare L.) Sprouts Supported by RNA-Seq Analysis
Q39217031	Natural selection and the genetic basis of osmoregulation in heteromyid rodents as revealed by RNA-seq
Q34520743	Near-optimal probabilistic RNA-seq quantification
Q54936205	Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis.
Q94481776	Negative binomial additive model for RNA-Seq data analysis
Q50099223	NetMiner-an ensemble pipeline for building genome-wide and high-quality gene co-expression network using massive-scale RNA-seq samples.
Q112640818	NetSeekR: a network analysis pipeline for RNA-Seq time series data
Q38838346	Network Module-Based Model in the Differential Expression Analysis for RNA-seq
Q35877153	Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis
Q31126223	Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development
Q112295406	Neuromuscular junction-specific genes screening by deep RNA-seq analysis
Q39142177	New RNA-seq approaches for the study of bacterial pathogens
Q112720798	New evaluation methods of read mapping by 17 aligners on simulated and empirical NGS data: an updated comparison of DNA- and RNA-Seq data from Illumina and Ion Torrent technologies
Q30317031	New gene models and alternative splicing in the maize pathogen Colletotrichum graminicola revealed by RNA-Seq analysis
Q42773696	New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics
Q98186282	New insights into the Manila clam and PAMPs interaction based on RNA-seq analysis of clam through in vitro challenges with LPS, PGN, and poly(I:C)
Q36560001	New insights into the Plasmodium vivax transcriptome using RNA-Seq
Q33808824	New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq
Q90912331	New prognostic markers revealed by RNA-Seq transcriptome analysis after MYC silencing in a metastatic gastric cancer cell line
Q92239134	Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription
Q91323233	Next generation sequencing and RNA-seq characterization of adipose tissue in the Nile crocodile (Crocodylus niloticus) in South Africa: Possible mechanism(s) of pathogenesis and pathophysiology of pansteatitis
Q35237973	Next generation sequencing yields the complete mitochondrial genome of the Endangered Chilean silverside Basilichthys microlepidotus (Jenyns, 1841) (Teleostei, Atherinopsidae), validated with RNA-seq
Q42082546	Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series
Q35147917	Next-Generation Sequencing RNA-Seq Library Construction
Q35084144	Next-generation sequencing applied to flower development: RNA-seq
Q97565967	Nitrate deficiency decreased photosynthesis and oxidation-reduction processes, but increased cellular transport, lignin biosynthesis and flavonoid metabolism revealed by RNA-Seq in Oryza sativa leaves
Q36397098	No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data.
Q112608490	Non-small-cell lung cancer classification via RNA-Seq and histology imaging probability fusion
Q33827942	Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq.
Q30844396	Normalization of RNA-seq data using factor analysis of control genes or samples
Q36110889	Normalization of human RNA-seq experiments using chimpanzee RNA as a spike-in standard.
Q89976628	Novel Aspects on The Interaction Between Grapevine and Plasmopara viticola: Dual-RNA-Seq Analysis Highlights Gene Expression Dynamics in The Pathogen and The Plant During The Battle For Infection
Q64082860	Novel Data Transformations for RNA-seq Differential Expression Analysis
Q42122998	Novel RNA biomarkers of prostate cancer revealed by RNA-seq analysis of formalin-fixed samples obtained from Russian patients.
Q112286998	Novel Targets in a High-Altitude Pulmonary Hypertension Rat Model Based on RNA-seq and Proteomics
Q30834972	Novel bioinformatics method for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Q53205999	Novel fusion transcripts in bladder cancer identified by RNA-seq.
Q91526803	Novel insights into host-pathogen interactions of large yellow croakers ( Larimichthys crocea) and pathogenic bacterium Pseudomonas plecoglossicida using time-resolved dual RNA-seq of infected spleens
Q38671359	Novel small RNA spike-in oligonucleotides enable absolute normalization of small RNA-Seq data.
Q30276962	Nuclear RNA-seq of single neurons reveals molecular signatures of activation
Q99411720	Nuclei Isolation from Fresh Frozen Brain Tumors for Single-Nucleus RNA-seq and ATAC-seq
Q60309834	O157:H7 transcriptome datasets for comparison of RNA-seq and microarray platforms
Q64083442	OMICfpp: a fuzzy approach for paired RNA-Seq counts
Q46134963	OP17MICRORNA PROFILING USING SMALL RNA-SEQ IN PAEDIATRIC LOW GRADE GLIOMAS.
Q43826516	ORMAN: optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms
Q44114588	OSA: a fast and accurate alignment tool for RNA-Seq
Q33654917	Oak root response to ectomycorrhizal symbiosis establishment: RNA-Seq derived transcript identification and expression profiling
Q29617522	Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
Q49868834	Oasis 2: improved online analysis of small RNA-seq data.
Q54976462	Obese rats supplemented with bitter melon display marked shifts in the expression of genes controlling inflammatory response and lipid metabolism by RNA-Seq analysis of colonic mucosa.
Q38862488	On the Molecular Basis of Division of Labor in Solenopsis invicta (Hymenoptera: Formicidae) Workers: RNA-seq Analysis
Q100460725	OneStopRNAseq: A Web Application for Comprehensive and Efficient Analyses of RNA-Seq Data
Q38063713	Opportunities and methods for studying alternative splicing in cancer with RNA-Seq
Q50319809	Optimization of an RNA-Seq Differential Gene Expression Analysis Depending on Biological Replicate Number and Library Size.
Q33789983	Optimized Method for Robust Transcriptome Profiling of Minute Tissues Using Laser Capture Microdissection and Low-Input RNA-Seq
Q39821008	Optimizing RNA-Seq Mapping with STAR.
Q47338829	Optimizing RNA-seq studies to investigate herbicide resistance.
Q30625869	Optimizing de novo assembly of short-read RNA-seq data for phylogenomics
Q34379264	Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data
Q34177228	Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study
Q55259245	Optimizing exosomal RNA isolation for RNA-Seq analyses of archival sera specimens.
Q57525406	Oqtans: a multifunctional workbench for RNA-seq data analysis
Q37720691	Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
Q91848252	Organism dual RNA-seq reveals the importance of BarA/UvrY in Vibrio parahaemolyticus virulence
Q33603493	OsPhyB-Mediating Novel Regulatory Pathway for Drought Tolerance in Rice Root Identified by a Global RNA-Seq Transcriptome Analysis of Rice Genes in Response to Water Deficiencies
Q47252957	Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates.
Q34121449	Overview of available methods for diverse RNA-Seq data analyses
Q38604852	Oyster RNA-seq Data Support the Development of Malacoherpesviridae Genomics
Q34118889	PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data
Q30965995	PDEGEM: Modeling non-uniform read distribution in RNA-Seq data
Q36055712	PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq.
Q57274915	PM-Seq: Using Finite Poisson Mixture Models for RNA-Seq Data Analysis and Transcript Expression Level Quantification
Q54897777	PP11. RNA-SEQ ANALYSIS OF PRIMARY AND RECURRENT GLIOBLASTOMA IDENTIFIES NOVEL THERAPEUTIC STRATEGIES.
Q47386969	PR2S2Clust: Patched RNA-seq read segments' structure-oriented clustering
Q37682157	PRODUCTION OF A PRELIMINARY QUALITY CONTROL PIPELINE FOR SINGLE NUCLEI RNA-SEQ AND ITS APPLICATION IN THE ANALYSIS OF CELL TYPE DIVERSITY OF POST-MORTEM HUMAN BRAIN NEOCORTEX.
Q34880666	PROPER: comprehensive power evaluation for differential expression using RNA-seq
Q92334118	PSI-Sigma: a comprehensive splicing-detection method for short-read and long-read RNA-seq analysis
Q39486275	PVAAS: identify variants associated with aberrant splicing from RNA-seq
Q57030828	PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice
Q91500996	PairedFB: a full hierarchical Bayesian model for paired RNA-seq data with heterogeneous treatment effects
Q91294845	Pan-cancer RNA-seq data stratifies tumours by some hallmarks of cancer
Q112703346	Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses
Q34883692	Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets
Q31097490	Parametric analysis of RNA-seq expression data.
Q47805891	Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models.
Q112276929	Pathogenic Mechanism of a Highly Virulent Infectious Hematopoietic Necrosis Virus in Head Kidney of Rainbow Trout (Oncorhynchusmykiss) Analyzed by RNA-Seq Transcriptome Profiling
Q30986279	Pathway analysis for RNA-Seq data using a score-based approach
Q53281402	PathwaySplice: An R package for unbiased pathway analysis of alternative splicing in RNA-Seq data.
Q38454562	Pathways related to PMA-differentiated THP1 human monocytic leukemia cells revealed by RNA-Seq
Q104508709	Patient Stratification of Clear Cell Renal Cell Carcinoma Using the Global Transcription Factor Activity Landscape Derived From RNA-Seq Data
Q37574150	PennSeq: accurate isoform-specific gene expression quantification in RNA-Seq by modeling non-uniform read distribution
Q34655860	Peregrine: A rapid and unbiased method to produce strand-specific RNA-Seq libraries from small quantities of starting material
Q91944668	Performance comparison of dimensionality reduction methods on RNA-Seq data from the GTEx project
Q97599914	Performance evaluation of lossy quality compression algorithms for RNA-seq data
Q89619312	Peripheral Blood Leukocyte RNA-Seq Identifies a Set of Genes Related to Abnormal Psychomotor Behavior Characteristics in Patients with Schizophrenia
Q112290248	Peripheral blood transcriptome heterogeneity and prognostic potential in lung cancer revealed by RNA-Seq
Q37274329	Perturbations of Plasmodium Puf2 expression and RNA-seq of Puf2-deficient sporozoites reveal a critical role in maintaining RNA homeostasis and parasite transmissibility
Q90443987	Phenotype and RNA-seq-Based transcriptome profiling of Staphylococcus aureus biofilms in response to tea tree oil
Q112779794	Phenotype-tissue expression and exploration (PTEE) resource facilitates the choice of tissue for RNA-seq-based clinical genetics studies
Q48256442	Phenotypic and Functional Characteristics of Human Schwann Cells as Revealed by Cell-Based Assays and RNA-SEQ.
Q64969922	Phospho-RNA-seq: a modified small RNA-seq method that reveals circulating mRNA and lncRNA fragments as potential biomarkers in human plasma.
Q37598063	Phosphorus remobilization from rice flag leaves during grain filling: an RNA-seq study.
Q93130122	Phylogenomic analyses and divergence time estimation of Elateroidea (Coleoptera) based on RNA-Seq data
Q30661155	Phylogenomic distance method for analyzing transcriptome evolution based on RNA-seq data
Q57922123	Phylogeny of the spider mite sub-family Tetranychinae (Acari: Tetranychidae) inferred from RNA-Seq data
Q90237380	Physiological RNA dynamics in RNA-Seq analysis
Q49567233	Physiological and RNA-seq analyses provide insights into the response mechanism of the Cf-10-mediated resistance to Cladosporium fulvum infection in tomato.
Q112361656	Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses
Q33359151	Piecing the puzzle together: a revisit to transcript reconstruction problem in RNA-seq
Q112841824	Pilot RNA‐seq data from 24 species of vascular plants at Harvard Forest
Q89475303	PingPongPro: a tool for the detection of piRNA-mediated transposon-silencing in small RNA-Seq data
Q90921404	PlanExp: intuitive integration of complex RNA-seq datasets with planarian omics resources
Q38809601	Plant adaptation or acclimation to rising CO2 ? Insight from first multigenerational RNA-Seq transcriptome
Q60930446	Plant stress RNA-seq Nexus: a stress-specific transcriptome database in plant cells
Q91465555	Plant virus interaction mechanism and associated pathways in mosaic disease of small cardamom (Elettaria cardamomum Maton) by RNA-Seq approach
Q36200165	Plasmodium parasites mount an arrest response to dihydroartemisinin, as revealed by whole transcriptome shotgun sequencing (RNA-seq) and microarray study
Q37661601	Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads
Q107061433	Polee: RNA-Seq analysis using approximate likelihood
Q92880265	Polyadenylation sites and their characteristics in the genome of channel catfish (Ictalurus punctatus) as revealed by using RNA-Seq data
Q40995562	Polyester: simulating RNA-seq datasets with differential transcript expression
Q35565874	Polyribosomal RNA-Seq reveals the decreased complexity and diversity of the Arabidopsis translatome
Q91492927	Polysaccharide biosynthetic pathway profiling and putative gene mining of Dendrobium moniliforme using RNA-Seq in different tissues
Q108127329	Polysomal mRNA Association and Gene Expression in
Q59794439	Polysome profiling followed by RNA-seq of cardiac differentiation stages in hESCs
Q30656545	Positional RNA-Seq identifies candidate genes for phenotypic engineering of sexual traits.
Q102376437	Possible A2E Mutagenic Effects on RPE Mitochondrial DNA from Innovative RNA-Seq Bioinformatics Pipeline
Q113903937	Potential biomarkers of endocrine and habitat disruption identified via RNA-Seq in Salvelinus fontinalis with proximity to fracking operations in Pennsylvania headwater stream ecosystems
Q92996654	Potential prognostic impact of EBV RNA-seq reads in gastric cancer: a reanalysis of The Cancer Genome Atlas cohort
Q34363862	Power analysis and sample size estimation for RNA-Seq differential expression
Q95331513	Power analysis for RNA-Seq differential expression studies using generalized linear mixed effects models
Q36362423	Power analysis for RNA-Seq differential expression studies.
Q112223523	Power and limitations of RNA-Seq: findings from the SEQC (MAQC-III) Consortium
Q90292454	Practical Guide for Fungal Gene Prediction from Genome Assembly and RNA-Seq Reads by FunGAP
Q48146430	Predicting causal variants affecting expression by using whole-genome sequencing and RNA-seq from multiple human tissues
Q57558041	Predicting essential proteins based on RNA-Seq, subcellular localization and GO annotation datasets
Q34993206	Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data
Q55255790	Predicting survival times for neuroblastoma patients using RNA-seq expression profiles.
Q30870609	Predicting the functional repertoire of an organism from unassembled RNA-seq data
Q41150198	Predicting the functions of long noncoding RNAs using RNA-seq based on Bayesian network
Q31100615	Prediction and Quantification of Splice Events from RNA-Seq Data
Q30576979	Prediction of altered 3'- UTR miRNA-binding sites from RNA-Seq data: the swine leukocyte antigen complex (SLA) as a model region
Q39740593	Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments
Q30581456	Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study
Q89315042	Preliminary RNA-Seq Analysis of Long Non-Coding RNAs Expressed in Human Term Placenta
Q90482550	Preparation of Vibrio cholerae Samples for RNA-seq Analysis
Q46261956	Preparing cDNA Libraries from Lytic Phage-Infected Cells for Whole Transcriptome Analysis by RNA-Seq
Q35881599	Primary candidate rna biomarker screening by RNA-seq for prostate cancer diagnostics
Q30804408	PrimerSeq: Design and visualization of RT-PCR primers for alternative splicing using RNA-seq data
Q34690154	Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial
Q46796650	Prioritizing disease-related genes and pathways by integrating patient-specific iPSC-derived RNA-seq and whole genome sequencing in hypoplastic left heart syndrome
Q30950144	Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability
Q35591225	Probe-Directed Degradation (PDD) for Flexible Removal of Unwanted cDNA Sequences from RNA-Seq Libraries
Q93580663	Processing RNA-seq Data to Create a Sequence Database for Proteomics Shotgun Data Analysis
Q108126843	Processing single-cell RNA-seq data for dimension reduction-based analyses using open-source tools
Q102066809	Profiling Alternative 3' Untranslated Regions in Sorghum using RNA-seq Data
Q42698342	Profiling RNA-Seq at multiple resolutions markedly increases the number of causal eQTLs in autoimmune disease.
Q33975418	Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA-Seq procedure.
Q34983195	Profiling microRNA expression in bovine alveolar macrophages using RNA-seq
Q90479802	Profiling of Stem/Progenitor Cell Regulatory Genes of the Synovial Joint by Genome-Wide RNA-Seq Analysis
Q36351677	Profiling of the silica-induced molecular events in lung epithelial cells using the RNA-Seq approach
Q39078675	Profiling the molecular mechanism of fullerene cytotoxicity on tumor cells by RNA-seq
Q104581779	ProkSeq for complete analysis of RNA-Seq data from prokaryotes
Q35841465	Proper Use of Allele-Specific Expression Improves Statistical Power for cis-eQTL Mapping with RNA-Seq Data
Q64110370	Prostate Cancer Gene Regulatory Network Inferred from RNA-Seq Data
Q34079606	Protein identification using customized protein sequence databases derived from RNA-Seq data
Q102052136	Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry
Q30651736	Proteogenomic database construction driven from large scale RNA-seq data
Q91581524	Proteogenomics-guided Evaluation of RNA-seq Assembly and Protein Database Construction for Emergent Model Organisms
Q30949221	Proteomic Validation of Transcript Isoforms, Including Those Assembled from RNA-Seq Data
Q99351906	Proteomic variations of esophageal squamous cell carcinoma revealed by combining RNA-seq proteogenomics and G-PTM search strategy
Q46262593	Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys.
Q112759957	Protocol for RNA-seq library preparation starting from a rare muscle stem cell population or a limited number of mouse embryonic stem cells
Q112647664	Protocol for isolation and functional validation of label-retaining quiescent colorectal cancer stem cells from patient-derived organoids for RNA-seq
Q97588056	Proximity RNA-seq: A Sequencing Method to Identify Co-localization of RNA
Q37318036	Psoriasis-Specific RNA Isoforms Identified by RNA-Seq Analysis of 173,446 Transcripts
Q98245624	Publisher Correction: Integrated analysis of a compendium of RNA-Seq datasets for splicing factors
Q94554808	Publisher Correction: RNA-Seq transcriptome profiling in three liver regeneration models in rats: comparative analysis of partial hepatectomy, ALLPS, and PVL
Q52625139	QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data.
Q90018414	QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data
Q57687873	QmihR: Pipeline for Quantification of Microbiome in Human RNA-seq
Q30981345	QoRTs: a comprehensive toolset for quality control and data processing of RNA-Seq experiments
Q34427914	Quality Control for RNA-Seq (QuaCRS): An Integrated Quality Control Pipeline
Q35122217	Quality assessment and control of tissue specific RNA-seq libraries of Drosophila transgenic RNAi models
Q42775542	Quality control method for RNA-seq using single nucleotide polymorphism allele frequency
Q41596778	Quality control of RNA-seq experiments
Q35995108	Quantification of Transcriptome Responses of the Rumen Epithelium to Butyrate Infusion using RNA-seq Technology
Q30941350	Quantification of co-transcriptional splicing from RNA-Seq data
Q36320432	Quantifying circular RNA expression from RNA-seq data using model-based framework
Q30883938	Quantifying entire transcriptomes by aligned RNA-seq data
Q93067617	Quantitative RNA Analysis Using RNA-Seq
Q34361674	Quantitative RNA-Seq analysis in non-model species: assessing transcriptome assemblies as a scaffold and the utility of evolutionary divergent genomic reference species
Q58785430	Quantitative RNA-seq Analysis Unveils Osmotic and Thermal Adaptation Mechanisms Relevant for Ectoine Production in
Q42172392	Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome
Q47581124	Quantitative RNA-seq meta-analysis of alternative exon usage in C. elegans
Q34416387	Quantitative and qualitative RNA-Seq-based evaluation of Epstein-Barr virus transcription in type I latency Burkitt's lymphoma cells
Q38284619	Quantitative bacterial transcriptomics with RNA-seq
Q45764303	Quantitative transcriptome analysis using RNA-seq
Q30885833	Quantitative visualization of alternative exon expression from RNA-seq data
Q42695438	Quark enables semi-reference-based compression of RNA-seq data
Q31036014	QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization
Q35653764	RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application
Q90402776	RASflow: an RNA-Seq analysis workflow with Snakemake
Q55260756	RBPMetaDB: a comprehensive annotation of mouse RNA-Seq datasets with perturbations of RNA-binding proteins.
Q31040436	RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data
Q36536381	RETRACTED ARTICLE: Genetic regulation of salt stress tolerance revealed by RNA-Seq in cotton diploid wild species, Gossypium davidsonii
Q35107335	RNA CoMPASS: a dual approach for pathogen and host transcriptome analysis of RNA-seq datasets
Q42773737	RNA Extraction from Xenopus Auditory and Vestibular Organs for Molecular Cloning and Expression Profiling with RNA-Seq and Microarrays
Q38430376	RNA SEQ Analysis Indicates that the AE3 Cl-/HCO3- Exchanger Contributes to Active Transport-Mediated CO2 Disposal in Heart
Q38865585	RNA Seq analysis for transcriptome profiling in response to classical swine fever vaccination in indigenous and crossbred pigs
Q35133018	RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis
Q38759492	RNA Seq analysis of the role of calcium chloride stress and electron transport in mitochondria for malachite green decolorization by Aspergillus niger.
Q42776997	RNA Seq profiling reveals a novel expression pattern of TGF-β target genes in human blood eosinophils.
Q89879223	RNA Sequencing (RNA-Seq) Based Transcriptome Analysis in Immune Response of Holstein Cattle to Killed Vaccine against Bovine Viral Diarrhea Virus Type I
Q58781427	RNA Sequencing (RNA-Seq) Reveals Extremely Low Levels of Reticulocyte-Derived Globin Gene Transcripts in Peripheral Blood From Horses () and Cattle ()
Q87866960	RNA amplification for pseudogene detection using RNA-seq
Q30562419	RNA editing in the human ENCODE RNA-seq data
Q101409945	RNA seq analyses of chicken reveals biological pathways involved in acclimation into different geographical locations
Q38436321	RNA seq- and DEG-based comparison of developmental toxicity in fish embryos of two species exposed to Iranian heavy crude oil.
Q57297402	RNA sequencing (RNA-Seq) and its application in ovarian cancer
Q38429559	RNA sequencing (RNA-Seq) of lymph node, spleen, and thymus transcriptome from wild Peninsular Malaysian cynomolgus macaque (Macaca fascicularis).
Q112728903	RNA sequencing (RNA-seq) analysis of gene expression provides new insights into hindlimb unloading-induced skeletal muscle atrophy
Q109039722	RNA sequencing identifies transcriptional changes in the rabbit larynx in response to low humidity challenge
Q40274867	RNA-Enrich: a cut-off free functional enrichment testing method for RNA-seq with improved detection power
Q49264100	RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data.
Q35541156	RNA-Rocket: an RNA-Seq analysis resource for infectious disease research
Q36527363	RNA-SEQ Reveals Transcriptional Level Changes of Poplar Roots in Different Forms of Nitrogen Treatments
Q34249292	RNA-SeQC: RNA-seq metrics for quality control and process optimization
Q61804519	RNA-Seq Analyses Identify Additivity as the Predominant Gene Expression Pattern in F1 Chicken Embryonic Brain and Liver
Q41696961	RNA-Seq Analyses Identify Frequent Allele Specific Expression and No Evidence of Genomic Imprinting in Specific Embryonic Tissues of Chicken
Q112279511	RNA-Seq Analyses Reveal Roles of the HVCN1 Proton Channel in Cardiac pH Homeostasis
Q96155638	RNA-Seq Analyses Reveal That Endothelial Activation and Fibrosis Are Induced Early and Progressively by Besnoitia besnoiti Host Cell Invasion and Proliferation
Q36283184	RNA-Seq Analyses for Two Silkworm Strains Reveals Insight into Their Susceptibility and Resistance to Beauveria bassiana Infection.
Q61811770	RNA-Seq Analyses of Midgut and Fat Body Tissues Reveal the Molecular Mechanism Underlying Resistance to Tomatine
Q90408613	RNA-Seq Analyses of the Role of miR-21 in Acute Pancreatitis
Q114113165	RNA-Seq Analysis Demonstrates Different Strategies Employed by Tiger Nuts (Cyperus esculentus L.) in Response to Drought Stress
Q92461206	RNA-Seq Analysis Identified XLOC_009190 as Potential Therapeutic Target for Lung Adenocarcinoma
Q91808362	RNA-Seq Analysis Identifies Differentially Expressed Genes Insubcutaneous Adipose Tissuein Qaidamford Cattle, Cattle-Yak, and Angus Cattle
Q112276957	RNA-Seq Analysis Identifies Transcription Factors Involved in Anthocyanin Biosynthesis of 'Red Zaosu' Pear Peel and Functional Study of PpPIF8
Q89531386	RNA-Seq Analysis Illuminates the Early Stages of Plasmodium Liver Infection
Q40554170	RNA-Seq Analysis Pipeline Based on Oshell Environment
Q42364041	RNA-Seq Analysis Provides the First Insights into the Phylogenetic Relationship and Interspecific Variation between Agropyron cristatum and Wheat
Q41146873	RNA-Seq Analysis Reveals Candidate Targets for Curcumin against Tetranychus cinnabarinus
Q112566526	RNA-Seq Analysis Reveals Expression Regulatory Divergence of W-Linked Genes between Two Contrasting Chicken Breeds
Q92650403	RNA-Seq Analysis Reveals Genes Related to Photoreception, Nutrient Uptake, and Toxicity in a Noxious Red-Tide Raphidophyte Chattonella antiqua
Q36015404	RNA-Seq Analysis Reveals Genes Underlying Different Disease Responses to Porcine Circovirus Type 2 in Pigs
Q101053418	RNA-Seq Analysis Reveals Hub Genes Involved in Chicken Intramuscular Fat and Abdominal Fat Deposition During Development
Q97688778	RNA-Seq Analysis Reveals Localization-Associated Alternative Splicing across 13 Cell Lines
Q35849571	RNA-Seq Analysis Reveals MAPKKK Family Members Related to Drought Tolerance in Maize
Q91637785	RNA-Seq Analysis Reveals Spatial and Sex Differences in Pectoralis Major Muscle of Broiler Chickens Contributing to Difference in Susceptibility to Wooden Breast Disease
Q36128476	RNA-Seq Analysis Reveals a Negative Role of KLF16 in Adipogenesis
Q55619198	RNA-Seq Analysis Reveals a Positive Role of HTR2A in Adipogenesis in Yan Yellow Cattle.
Q112703721	RNA-Seq Analysis Reveals the Potential Molecular Mechanisms of Puerarin on Intramuscular Fat Deposition in Heat-Stressed Beef Cattle
Q58559480	RNA-Seq Analysis for Assessing the Early Response to DSP Toxins in Digestive Gland and Gill
Q94491734	RNA-Seq Analysis in Liver of Selenium-deficient Selenocysteine Lyase Knockout Mouse (P24-023-19)
Q35752006	RNA-Seq Analysis of Abdominal Fat Reveals Differences between Modern Commercial Broiler Chickens with High and Low Feed Efficiencies
Q36133131	RNA-Seq Analysis of Abdominal Fat in Genetically Fat and Lean Chickens Highlights a Divergence in Expression of Genes Controlling Adiposity, Hemostasis, and Lipid Metabolism
Q49893337	RNA-Seq Analysis of Antibiotic-Producing Bacillus subtilis SC-8 Reveals a Role for Small Peptides in Controlling PapR Signaling.
Q104273676	RNA-Seq Analysis of Cisplatin and the Monofunctional Platinum(II) Complex, Phenanthriplatin, in A549 Non-Small Cell Lung Cancer and IMR90 Lung Fibroblast Cell Lines
Q104462877	RNA-Seq Analysis of Colorectal Tumor-Infiltrating Myeloid-Derived Suppressor Cell Subsets Revealed Gene Signatures of Poor Prognosis
Q112651195	RNA-Seq Analysis of Developing Grains of Wheat to Intrigue Into the Complex Molecular Mechanism of the Heat Stress Response
Q36259569	RNA-Seq Analysis of Developing Pecan (Carya illinoinensis) Embryos Reveals Parallel Expression Patterns among Allergen and Lipid Metabolism Genes.
Q36052613	RNA-Seq Analysis of Differential Gene Expression Responding to Different Rhizobium Strains in Soybean (Glycine max) Roots
Q35761182	RNA-Seq Analysis of Differential Splice Junction Usage and Intron Retentions by DEXSeq
Q33679301	RNA-Seq Analysis of Diverse Rice Genotypes to Identify the Genes Controlling Coleoptile Growth during Submerged Germination.
Q38973903	RNA-Seq Analysis of Gene Expression, Viral Pathogen, and B-Cell/T-Cell Receptor Signatures in Complex Chronic Disease
Q89850947	RNA-Seq Analysis of Genetic and Transcriptome Network Effects of Dual-Trait Selection for Ethanol Preference and Withdrawal Using SOT and NOT Genetic Models
Q28548290	RNA-Seq Analysis of Human Trigeminal and Dorsal Root Ganglia with a Focus on Chemoreceptors
Q50046027	RNA-Seq Analysis of IL-1B and IL-36 Responses in Epidermal Keratinocytes Identifies a Shared MyD88-Dependent Gene Signature.
Q51739972	RNA-Seq Analysis of Islets to Characterise the Dedifferentiation in Type 2 Diabetes Model Mice db/db.
Q37733773	RNA-Seq Analysis of Microglia Reveals Time-Dependent Activation of Specific Genetic Programs following Spinal Cord Injury.
Q46275235	RNA-Seq Analysis of Plant Maturity in Crested Wheatgrass (Agropyron cristatum L.).
Q36387573	RNA-Seq Analysis of Rice Roots Reveals the Involvement of Post-Transcriptional Regulation in Response to Cadmium Stress
Q58743673	RNA-Seq Analysis of Spinal Cord Tissues from hPFN1 Transgenic Mouse Model of ALS at Pre-symptomatic and End-Stages of Disease
Q49196789	RNA-Seq Analysis of an Antisense Sequence Optimized for Exon Skipping in Duchenne Patients Reveals No Off-Target Effect.
Q38437577	RNA-Seq Analysis of the Antioxidant Status and Immune Response of Portunus trituberculatus Following Aerial Exposure
Q37027361	RNA-Seq Analysis of the Arabidopsis Transcriptome in Pluripotent Calli
Q112348983	RNA-Seq Analysis of the Effect of Zinc Deficiency on Microsporum canis, ZafA Gene Is Important for Growth and Pathogenicity
Q35762356	RNA-Seq Analysis of the Expression of Genes Encoding Cell Wall Degrading Enzymes during Infection of Lupin (Lupinus angustifolius) by Phytophthora parasitica
Q112276546	RNA-Seq Analysis of the Growth Hormone Transgenic Female Triploid Atlantic Salmon (Salmo salar) Hepatic Transcriptome Reveals Broad Temperature-Mediated Effects on Metabolism and Other Biological Processes
Q35526164	RNA-Seq Analysis of the Host Response to Staphylococcus aureus Skin and Soft Tissue Infection in a Mouse Model
Q94464577	RNA-Seq Analysis of the Liver Transcriptome Reveals the Networks Regulating Treatment of Sitagliptin Phosphate plus Fuzhujiangtang Granule in the Zucker Diabetic Fatty Rats
Q50214476	RNA-Seq Analysis of the Transcriptome of Leaf Senescence in Tobacco.
Q52346746	RNA-Seq Analysis to Detect Abnormal Fusion Transcripts Linked to Chromothripsis.
Q38741021	RNA-Seq Analysis to Measure the Expression of SINE Retroelements.
Q55649800	RNA-Seq Analysis with NextGENe Software.
Q38051330	RNA-Seq Assembly - Are We There Yet?
Q28743618	RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome
Q30485327	RNA-Seq Atlas--a reference database for gene expression profiling in normal tissue by next-generation sequencing.
Q36062395	RNA-Seq Based Analysis of Population Structure within the Maize Inbred B73.
Q28648102	RNA-Seq Based De Novo Transcriptome Assembly and Gene Discovery of Cistanche deserticola Fleshy Stem
Q35827502	RNA-Seq Based Identification of Candidate Parasitism Genes of Cereal Cyst Nematode (Heterodera avenae) during Incompatible Infection to Aegilops variabilis
Q92238046	RNA-Seq Based Transcriptome Analysis of Endothelial Differentiation of Bone Marrow Mesenchymal Stem Cells
Q38712840	RNA-Seq Based Transcriptome Analysis of the Type I Interferon Host Response upon Vaccinia Virus Infection of Mouse Cells
Q90484630	RNA-Seq Bayesian Network Exploration of Immune System in Bovine
Q30250975	RNA-Seq Comparison of Larval and Adult Malpighian Tubules of the Yellow Fever Mosquito Aedes aegypti Reveals Life Stage-Specific Changes in Renal Function
Q31139217	RNA-Seq Count Data Modelling by Grey Relational Analysis and Nonparametric Gaussian Process
Q42696999	RNA-Seq Data Analysis Protocol: Combining In-House and Publicly Available Data
Q47944134	RNA-Seq Data Analysis: From Raw Data Quality Control to Differential Expression Analysis
Q112719647	RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species
Q93190399	RNA-Seq Data-Mining Allows the Discovery of Two Long Non-Coding RNA Biomarkers of Viral Infection in Humans
Q30870540	RNA-Seq Data: A Complexity Journey
Q90850935	RNA-Seq De Novo Assembly and Differential Transcriptome Analysis of Korean Medicinal Herb Cirsium japonicum var. spinossimum
Q27315803	RNA-Seq Differentiates Tumour and Host mRNA Expression Changes Induced by Treatment of Human Tumour Xenografts with the VEGFR Tyrosine Kinase Inhibitor Cediranib
Q31026450	RNA-Seq Experiment and Data Analysis.
Q38789145	RNA-Seq Expression Analysis of Enteric Neuron Cells with Rotenone Treatment and Prediction of Regulated Pathways
Q112297989	RNA-Seq Highlights Molecular Events Associated With Impaired Pollen-Pistil Interactions Following Short-Term Heat Stress in Brassica napus
Q42777136	RNA-Seq Identifies Circulating miR-125a-5p, miR-125b-5p, and miR-143-3p as Potential Biomarkers for Acute Ischemic Stroke
Q112645894	RNA-Seq Identifies Marked Th17 Cell Activation and Altered CFTR Expression in Different Atopic Dermatitis Subtypes in Chinese Han Populations
Q39577685	RNA-Seq Library Generation from Rare Human Cells Isolated by FACS.
Q38447071	RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
Q55491365	RNA-Seq Meta-analysis identifies genes in skeletal muscle associated with gain and intake across a multi-season study of crossbred beef steers.
Q47697333	RNA-Seq Mouse Brain Regions Expression Data Analysis: Focus on ApoE Functional Network
Q91529332	RNA-Seq Perspectives to Improve Clinical Diagnosis
Q54262970	RNA-Seq Profile Reveals Th-1 and Th-17-Type of Immune Responses in Mice Infected Systemically with Aspergillus fumigatus.
Q47141875	RNA-Seq Profiling Shows Divergent Gene Expression Patterns in Arabidopsis Grown under Different Densities
Q112295544	RNA-Seq Profiling of Circular RNAs During Development of Hindgut in Rat Embryos With Ethylenethiourea-Induced Anorectal Malformations
Q98238919	RNA-Seq Profiling of Circular RNAs and the Oncogenic Role of circPVT1 in Cutaneous Squamous Cell Carcinoma
Q35987260	RNA-Seq Profiling of Intact and Enucleated Oocyte SCNT Embryos Reveals the Role of Pig Oocyte Nucleus in Somatic Reprogramming
Q47758613	RNA-Seq Profiling of Intestinal Expression of Xenobiotic Processing Genes in Germ-Free Mice.
Q112695291	RNA-Seq Profiling of Neutrophil-Derived Microvesicles in Alzheimer's Disease Patients Identifies a miRNA Signature That May Impact Blood-Brain Barrier Integrity
Q97074242	RNA-Seq Profiling of Serum Exosomal Circular RNAs Reveals Circ-PNN as a Potential Biomarker for Human Colorectal Cancer
Q112284341	RNA-Seq Profiling to Investigate the Mechanism of Qishen Granules on Regulating Mitochondrial Energy Metabolism of Heart Failure in Rats
Q108589150	RNA-Seq Provides New Insights into the Molecular Events Involved in “Ball-Skin versus Bladder Effect” on Fruit Cracking in Litchi
Q112700218	RNA-Seq Provides Novel Genomic Resources for Noug (Guizotia abyssinica) and Reveals Microsatellite Frequency and Distribution in Its Transcriptome
Q36077714	RNA-Seq Quantification of Hepatic Drug Processing Genes in Germ-Free Mice
Q96134011	RNA-Seq Reproducibility Assessment of the Sequencing Quality Control Project
Q28553023	RNA-Seq Revealed Differences in Transcriptomes between 3ADON and 15ADON Populations of Fusarium graminearum In Vitro and In Planta
Q64235826	RNA-Seq Revealed Expression of Many Novel Genes Associated With Persistence and Clearance in the Host Macrophage
Q91639221	RNA-Seq Revealed Novel Non-proliferative Retinopathy Specific Circulating MiRNAs in T2DM Patients
Q90781905	RNA-Seq Revealed a Circular RNA-microRNA-mRNA Regulatory Network in Hantaan Virus Infection
Q40486717	RNA-Seq Reveals Acute Manganese Exposure Increases Endoplasmic Reticulum Related and Lipocalin mRNAs in Caenorhabditis elegans
Q33774885	RNA-Seq Reveals Enhanced Sugar Metabolism in Streptococcus mutans Co-cultured with Candida albicans within Mixed-Species Biofilms
Q50317836	RNA-Seq Reveals Extensive Transcriptional Response to Heat Stress in the Stony Coral Galaxea fascicularis.
Q90619424	RNA-Seq Reveals Flavonoid Biosynthesis-Related Genes in Pecan ( Carya illinoinensis) Kernels
Q97891481	RNA-Seq Reveals Hawthorn Tree as a New Natural Host for Apple Necrotic Mosaic Virus, Possibly Associated with Hawthorn Mosaic Disease
Q35893805	RNA-Seq Reveals OTA-Related Gene Transcriptional Changes in Aspergillus carbonarius.
Q92522815	RNA-Seq Reveals Underlying Transcriptomic Mechanisms of Bone Marrow-Derived Mesenchymal Stem Cells in the Regulation of Microglia-Mediated Neuroinflammation After Subarachnoid Hemorrhage
Q98177820	RNA-Seq Reveals miRNA Role Shifts in Seven Stages of Skeletal Muscles in Goat Fetuses and Kids
Q112645369	RNA-Seq Reveals miRNA and mRNA Co-regulate Muscle Differentiation in Fetal Leizhou Goats
Q110530377	RNA-Seq Reveals that Light and Darkness Are Different Stimuli in Freshwater Heterotrophic Actinobacteria
Q35930750	RNA-Seq Reveals the Angiogenesis Diversity between the Fetal and Adults Bone Mesenchyme Stem Cell
Q99213461	RNA-Seq Reveals the Expression Profiles of Long Non-Coding RNAs in Lactating Mammary Gland from Two Sheep Breeds with Divergent Milk Phenotype
Q112702756	RNA-Seq Reveals the Role of miR-29c in Regulating Inflammation and Oxidative Stress of Bovine Mammary Epithelial Cells
Q35828997	RNA-Seq SSRs of Moth Orchid and Screening for Molecular Markers across Genus Phalaenopsis (Orchidaceae).
Q61799219	RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types
Q36007532	RNA-Seq Study of Microbially Induced Hemocyte Transcripts from Larval Heliothis virescens (Lepidoptera: Noctuidae).
Q112649455	RNA-Seq Technology Reveals the Mechanism of SDT Combined With Novel Nanobubbles Against HCC
Q102072797	RNA-Seq Time Series of Vitis vinifera Bud Development Reveals Correlation of Expression Patterns with the Local Temperature Profile
Q112739814	RNA-Seq Transcriptome Analysis Provides Candidate Genes for Resistance to Tomato Leaf Curl New Delhi Virus in Melon
Q112317611	RNA-Seq Transcriptome Analysis of Differentiated Human Oligodendrocytic MO3.13 Cells Shows Upregulation of Genes Involved in Myogenesis
Q36147943	RNA-Seq Transcriptome Analysis of Direction-Selective T4/T5 Neurons in Drosophila
Q112721063	RNA-Seq Transcriptome Analysis of Peripheral Blood From Cattle Infected With Mycobacterium bovis Across an Experimental Time Course
Q64098270	RNA-Seq Transcriptome Analysis of Rice Primary Roots Reveals the Role of Flavonoids in Regulating the Rice Primary Root Growth
Q64253121	RNA-Seq Transcriptome Profiling of the Queen Scallop (Aequipecten opercularis) Digestive Gland after Exposure to Domoic Acid-Producing Pseudo-nitzschia
Q36177263	RNA-Seq Transcriptomic Responses of Full-Thickness Dermal Excision Wounds to Pseudomonas aeruginosa Acute and Biofilm Infection
Q35619173	RNA-Seq Uncovers SNPs and Alternative Splicing Events in Asian Lotus (Nelumbo nucifera).
Q30847766	RNA-Seq Validation of RNAi Identifies Additional Gene Connectivity in Tribolium castaneum (Coleoptera: Tenebrionidae)
Q112298896	RNA-Seq Whole Transcriptome Analysis of Bovine Mammary Epithelial Cells in Response to Intracellular Staphylococcus aureus
Q34558896	RNA-Seq accurately identifies cancer biomarker signatures to distinguish tissue of origin.
Q34243017	RNA-Seq alignment to individualized genomes improves transcript abundance estimates in multiparent populations.
Q92692941	RNA-Seq analyses demonstrate EVI-1-induced morbid hematopoiesis and developmental abnormality in zebrafish were related with MAPK pathway
Q34063655	RNA-Seq analyses generate comprehensive transcriptomic landscape and reveal complex transcript patterns in hepatocellular carcinoma
Q38164372	RNA-Seq analyses reveal CRISPR RNA processing and regulation patterns
Q34341390	RNA-Seq analyses reveal the order of tRNA processing events and the maturation of C/D box and CRISPR RNAs in the hyperthermophile Methanopyrus kandleri
Q35233246	RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing
Q48266943	RNA-Seq analysis and comparison of corneal epithelium in keratoconus and myopia patients.
Q52599298	RNA-Seq analysis and comparison of the enzymes involved in ionone synthesis of three cultivars of Osmanthus.
Q92797076	RNA-Seq analysis and de novo transcriptome assembly of Cry toxin susceptible and tolerant Achaea janata larvae
Q38501230	RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis
Q92391469	RNA-Seq analysis and functional characterization revealed lncRNA NONRATT007560.2 regulated cardiomyocytes oxidative stress and apoptosis induced by high glucose
Q35392502	RNA-Seq analysis and gene discovery of Andrias davidianus using Illumina short read sequencing
Q34362128	RNA-Seq analysis and targeted mutagenesis for improved free fatty acid production in an engineered cyanobacterium
Q35030206	RNA-Seq analysis and transcriptome assembly for blackberry (Rubus sp. Var. Lochness) fruit
Q35751202	RNA-Seq analysis and whole genome DNA-binding profile of the Vibrio cholerae histone-like nucleoid structuring protein (H-NS).
Q42773644	RNA-Seq analysis discloses early senescence and nucleolar dysfunction triggered by Tdp1α depletion in Medicago truncatula.
Q50060819	RNA-Seq analysis during the life cycle of Cryptosporidium parvum reveals significant differential gene expression between proliferating stages in the intestine and infectious sporozoites.
Q36333016	RNA-Seq analysis for indigo biosynthesis pathway genes in Indigofera tinctoria and Polygonum tinctorium
Q35948685	RNA-Seq analysis for the potential targets and molecular mechanisms of 17 β-estradiol in squamous cell lung carcinoma
Q37375826	RNA-Seq analysis identifies a novel set of editing substrates for human ADAR2 present in Saccharomyces cerevisiae
Q38306181	RNA-Seq analysis identifies aberrant RNA splicing of TRIP12 in acute myeloid leukemia patients at remission
Q35657467	RNA-Seq analysis identifies genes associated with differential reproductive success under drought-stress in accessions of wild barley Hordeum spontaneum
Q36012077	RNA-Seq analysis identifies key genes associated with haustorial development in the root hemiparasite Santalum album
Q33769055	RNA-Seq analysis implicates detoxification pathways in ovine mycotoxin resistance
Q34530641	RNA-Seq analysis implicates dysregulation of the immune system in schizophrenia
Q34041397	RNA-Seq analysis in MeV.
Q90842272	RNA-Seq analysis in an avian model of maternal phenylketonuria
Q34993977	RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation
Q35007383	RNA-Seq analysis of Citrus reticulata in the early stages of Xylella fastidiosa infection reveals auxin-related genes as a defense response.
Q90634748	RNA-Seq analysis of Clerodendrum inerme (L.) roots in response to salt stress
Q28489112	RNA-Seq analysis of Cocos nucifera: transcriptome sequencing and de novo assembly for subsequent functional genomics approaches
Q94596686	RNA-Seq analysis of European sea bass (Dicentrarchus labrax L.) infected with nodavirus reveals powerful modulation of the stress response
Q36050665	RNA-Seq analysis of Gtf2ird1 knockout epidermal tissue provides potential insights into molecular mechanisms underpinning Williams-Beuren syndrome
Q34997276	RNA-Seq analysis of Mycobacterium avium non-coding transcriptome
Q58093923	RNA-Seq analysis of Polyrhachis vicina Roger and insights into the heat shock protein 90 and 70 families
Q112707298	RNA-Seq analysis of a Pax3-expressing myoblast clone in-vitro and effect of culture surface stiffness on differentiation
Q35570215	RNA-Seq analysis of a soybean near-isogenic line carrying bacterial leaf pustule-resistant and -susceptible alleles
Q111327618	RNA-Seq analysis of blood meal induced gene-expression changes in Aedes aegypti ovaries
Q28804081	RNA-Seq analysis of chikungunya virus infection and identification of granzyme A as a major promoter of arthritic inflammation
Q92224648	RNA-Seq analysis of compatible and incompatible styles of Pyrus species at the beginning of pollination
Q36228842	RNA-Seq analysis of developing nasturtium seeds (Tropaeolum majus): identification and characterization of an additional galactosyltransferase involved in xyloglucan biosynthesis
Q41918164	RNA-Seq analysis of differential gene expression in electroporated chick embryonic spinal cord.
Q58729965	RNA-Seq analysis of differential gene expression in xylem during the early stages of tension wood formation
Q86106857	RNA-Seq analysis of differentially expressed genes in rice under varied nitrogen supplies
Q89362322	RNA-Seq analysis of differentially expressed genes in the grand jackknife clam Solen grandis under aerial exposure
Q98784937	RNA-Seq analysis of differentially expressed genes of Staphylococcus epidermidis isolated from postoperative endophthalmitis and the healthy conjunctiva
Q57809412	RNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss)
Q91919224	RNA-Seq analysis of differentially expressed genes relevant to mismatch repair in aging hematopoietic stem-progenitor cells
Q64375087	RNA-Seq analysis of duck embryo fibroblast cell gene expression during the early stage of egg drop syndrome virus infection
Q112700474	RNA-Seq analysis of duck embryo fibroblast cells gene expression during duck Tembusu virus infection
Q42289792	RNA-Seq analysis of enteroendocrine cells reveals a role for FABP5 in the control of GIP secretion
Q38463467	RNA-Seq analysis of frontal cortex and cerebellum from 5XFAD mice at early stage of disease pathology
Q93006124	RNA-Seq analysis of gene expression changes triggered by Xanthomonas oryzae pv. oryzae in a susceptible rice genotype
Q33713074	RNA-Seq analysis of gene expression for floral development in crested wheatgrass (Agropyron cristatum L.).
Q101122181	RNA-Seq analysis of genes affected by Cyclophilin A/DIAGEOTROPICA (DGT) in tomato root development
Q88388135	RNA-Seq analysis of global transcriptomic changes suggests a roles for the MAPK pathway and carbon metabolism in cell wall maintenance in a Saccharomyces cerevisiae FKS1 mutant
Q93339821	RNA-Seq analysis of gynoecious and weak female cucumber revealing the cell cycle pathway may regulate sex determination in cucumber
Q36122844	RNA-Seq analysis of high NaCl-induced gene expression
Q38715424	RNA-Seq analysis of human cell lines established from normal and neoplastic esophageal squamous epithelium.
Q90754417	RNA-Seq analysis of ileocecal valve and peripheral blood from Holstein cattle infected with Mycobacterium avium subsp. paratuberculosis revealed dysregulation of the CXCL8/IL8 signaling pathway
Q35946645	RNA-Seq analysis of immune-relevant genes in Lateolabrax japonicus during Vibrio anguillarum infection
Q52565481	RNA-Seq analysis of interferon inducible p204-mediated network in anti-tumor immunity.
Q35726897	RNA-Seq analysis of isolate- and growth phase-specific differences in the global transcriptomes of enteropathogenic Escherichia coli prototype isolates
Q38951698	RNA-Seq analysis of isolated satellite cells in Prmt5 deficient mice.
Q35814033	RNA-Seq analysis of laser-capture microdissected cells of the developing central starchy endosperm of maize
Q37627811	RNA-Seq analysis of nodule development at five different developmental stages of soybean (Glycine max) inoculated with Bradyrhizobium japonicum strain 113-2.
Q38448678	RNA-Seq analysis of non-small cell lung cancer in female never-smokers reveals candidate cancer-associated long non-coding RNAs
Q38891054	RNA-Seq analysis of peripheral blood mononuclear cells reveals unique transcriptional signatures associated with disease progression in dengue patients.
Q91169477	RNA-Seq analysis of peripheral blood mononuclear cells reveals unique transcriptional signatures associated with radiotherapy response of nasopharyngeal carcinoma and prognosis of head and neck cancer
Q92139878	RNA-Seq analysis of potential lncRNAs and genes for the anti-renal fibrotic effect of norcantharidin
Q35669054	RNA-Seq analysis of resistant and susceptible potato varieties during the early stages of potato virus Y infection
Q46857471	RNA-Seq analysis of resistant and susceptible sub-tropical maize lines reveals a role for kauralexins in resistance to grey leaf spot disease, caused by Cercospora zeina
Q41505241	RNA-Seq analysis of rye-grass transcriptomic response to an herbicide inhibiting acetolactate-synthase identifies transcripts linked to non-target-site-based resistance.
Q36295469	RNA-Seq analysis of salinity stress-responsive transcriptome in the liver of spotted sea bass (Lateolabrax maculatus)
Q36127162	RNA-Seq analysis of seasonal and individual variation in blood transcriptomes of healthy managed bottlenose dolphins
Q64899166	RNA-Seq analysis of soft rush (Juncus effusus): transcriptome sequencing, de novo assembly, annotation, and polymorphism identification.
Q34946799	RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts
Q34384245	RNA-Seq analysis of the Sclerotinia homoeocarpa--creeping bentgrass pathosystem
Q92580501	RNA-Seq analysis of the T3SA regulon in Shigella flexneri reveals two new chromosomal genes upregulated in the on-state
Q93346835	RNA-Seq analysis of the bioluminescent and non-bioluminescent species of Elateridae (Coleoptera): Comparison to others photogenic and non-photogenic tissues of Elateroidea species
Q98185407	RNA-Seq analysis of the guppy immune response against Gyrodactylus bullatarudis infection
Q35243430	RNA-Seq analysis of the multipartite genome of Rhizobium etli CE3 shows different replicon contributions under heat and saline shock.
Q38492785	RNA-Seq analysis of the parietal cortex in Alzheimer's disease reveals alternatively spliced isoforms related to lipid metabolism
Q91403526	RNA-Seq analysis of the pathogenesis of STZ-induced male diabetic mouse liver
Q42774494	RNA-Seq analysis of the toxicant-induced transcriptome of the marine diatom, Ceratoneis closterium
Q46255798	RNA-Seq analysis of the wild barley (H. spontaneum) leaf transcriptome under salt stress.
Q57617926	RNA-Seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision-cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol
Q45818722	RNA-Seq analysis of two brain regions vulnerable to Alzheimer's disease
Q40178480	RNA-Seq analysis of urea nutrition responsive transcriptome of Oryza sativa elite indica cultivar RP Bio 226.
Q35183433	RNA-Seq analysis of yak ovary: improving yak gene structure information and mining reproduction-related genes
Q38613312	RNA-Seq analysis on chicken taste sensory organs: An ideal system to study organogenesis
Q97879104	RNA-Seq analysis on ets1 mutant embryos of Xenopus tropicalis identifies microseminoprotein beta gene 3 as an essential regulator of neural crest migration
Q41886092	RNA-Seq analysis provides insights for understanding photoautotrophic polyhydroxyalkanoate production in recombinant Synechocystis Sp.
Q92850032	RNA-Seq analysis revealed genes associated with UV-induced cell necrosis through MAPK/TNF-α pathways in human dermal fibroblast cells as an inducer of premature photoaging
Q55514482	RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.).
Q90430967	RNA-Seq analysis revealed the molecular mechanisms of photobiomodulation effect on human fibroblasts
Q90735365	RNA-Seq analysis reveals a negative role of MSMO1 with a synergized NSDHL expression during adipogenesis of 3T3-L1
Q35232930	RNA-Seq analysis reveals a six-gene SoxR regulon in Streptomyces coelicolor
Q90904996	RNA-Seq analysis reveals an essential role of tyrosine metabolism pathway in response to root-rot infection in Gerbera hybrida
Q28534815	RNA-Seq analysis reveals candidate genes for ontogenic resistance in Malus-Venturia pathosystem
Q100696937	RNA-Seq analysis reveals functionally relevant coding and non-coding RNAs in crossbred bull spermatozoa
Q104685902	RNA-Seq analysis reveals gene expression changes induced by IL-6 trans-signaling activation in retinal endothelial cells
Q40129221	RNA-Seq analysis reveals genes associated with resistance to Taura syndrome virus (TSV) in the Pacific white shrimp Litopenaeus vannamei
Q47112005	RNA-Seq analysis reveals insight into enhanced rice Xa7-mediated bacterial blight resistance at high temperature
Q37327412	RNA-Seq analysis reveals new evidence for inflammation-related changes in aged kidney
Q34550007	RNA-Seq analysis reveals new gene models and alternative splicing in the fungal pathogen Fusarium graminearum
Q89938401	RNA-Seq analysis reveals pluripotency-associated genes and their interaction networks in human embryonic stem cells
Q112718220	RNA-Seq analysis reveals potential regulators of programmed cell death and leaf remodelling in lace plant (Aponogeton madagascariensis)
Q33832723	RNA-Seq analysis reveals that multiple phytohormone biosynthesis and signal transduction pathways are reprogrammed in curled-cotyledons mutant of soybean [Glycine max (L.) Merr].
Q89468397	RNA-Seq analysis reveals that spring viraemia of carp virus induces a broad spectrum of PIM kinases in zebrafish kidney that promote viral entry
Q46261240	RNA-Seq analysis reveals the distinctive adaxial-abaxial polarity in the asymmetric one-theca stamen of Canna indica
Q104486488	RNA-Seq analysis reveals the growth and photosynthetic responses of rapeseed (Brassica napus L.) under red and blue LEDs with supplemental yellow, green, or white light
Q114135718	RNA-Seq analysis reveals the important co-expressed genes associated with polyphyllin biosynthesis during the developmental stages of Paris polyphylla
Q92076755	RNA-Seq analysis reveals the potential molecular mechanisms of daidzein on adipogenesis in subcutaneous adipose tissue of finishing Xianan beef cattle
Q64059744	RNA-Seq analysis reveals transcript diversity and active genes after common cutworm (Spodoptera litura Fabricius) attack in resistant and susceptible wild soybean lines
Q36836995	RNA-Seq analysis uncovers non-coding small RNA system of Mycobacterium neoaurum in the metabolism of sterols to accumulate steroid intermediates
Q34209332	RNA-Seq analysis uncovers transcriptomic variations between morphologically similar in vivo- and in vitro-derived bovine blastocysts
Q52617360	RNA-Seq analysis unveils gene regulation of fruit size cooperatively determined by velocity and duration of fruit swelling in peach.
Q35137501	RNA-Seq analysis using de novo transcriptome assembly as a reference for the salmon louse Caligus rogercresseyi
Q52615500	RNA-Seq analysis validates the use of culture-derived Trypanosoma brucei and provides new markers for mammalian and insect life-cycle stages.
Q112692982	RNA-Seq and 16S rRNA Analysis Revealed the Effect of Deltamethrin on Channel Catfish in the Early Stage of Acute Exposure
Q35196307	RNA-Seq and ChIP-Seq reveal SQSTM1/p62 as a key mediator of JunB suppression of NF-κB-dependent inflammation
Q33852937	RNA-Seq and CyTOF immuno-profiling of regenerating lacrimal glands identifies a novel subset of cells expressing muscle-related proteins
Q88690773	RNA-Seq and Expression Arrays: Selection Guidelines for Genome-Wide Expression Profiling
Q35899774	RNA-Seq and Gene Network Analysis Uncover Activation of an ABA-Dependent Signalosome During the Cork Oak Root Response to Drought
Q112279730	RNA-Seq and Gene Regulatory Network Analyses Uncover Candidate Genes in the Early Defense to Two Hemibiotrophic Colletorichum spp. in Strawberry
Q42778154	RNA-Seq and Mass-Spectrometry-Based Lipidomics Reveal Extensive Changes of Glycerolipid Pathways in Brown Adipose Tissue in Response to Cold.
Q39207101	RNA-Seq and Network Analysis Revealed Interacting Pathways in TGF-β-Treated Lung Cancer Cell Lines
Q30461869	RNA-Seq and RNA immunoprecipitation analyses of the transcriptome of Streptomyces coelicolor identify substrates for RNase III
Q55302296	RNA-Seq and UHPLC-Q-TOF/MS Based Lipidomics Study in Lysiphlebia japonica.
Q100461690	RNA-Seq and differential gene expression analysis in Temora stylifera copepod females with contrasting non-feeding nauplii survival rates: an environmental transcriptomics study
Q34287769	RNA-Seq and expression microarray highlight different aspects of the fetal amniotic fluid transcriptome.
Q35840638	RNA-Seq and find: entering the RNA deep field
Q34284546	RNA-Seq and human complex diseases: recent accomplishments and future perspectives.
Q36911072	RNA-Seq and iTRAQ Reveal the Dwarfing Mechanism of Dwarf Polish Wheat (Triticum polonicum L.).
Q64053671	RNA-Seq and iTRAQ reveal multiple pathways involved in storage root formation and development in sweet potato (Ipomoea batatas L.)
Q34084296	RNA-Seq and its applications: a new technology for transcriptomics
Q38720606	RNA-Seq and metabolic flux analysis of Tetraselmis sp. M8 during nitrogen starvation reveals a two-stage lipid accumulation mechanism.
Q27324665	RNA-Seq and microarray analysis of the Xenopus inner ear transcriptome discloses orthologous OMIM(®) genes for hereditary disorders of hearing and balance
Q28541792	RNA-Seq and microarrays analyses reveal global differential transcriptomes of Mesorhizobium huakuii 7653R between bacteroids and free-living cells
Q34120973	RNA-Seq and molecular docking reveal multi-level pesticide resistance in the bed bug.
Q92415310	RNA-Seq and protein mass spectrometry in microdissected kidney tubules reveal signaling processes initiating lithium-induced nephrogenic diabetes insipidus
Q94481781	RNA-Seq and secondary metabolite analyses reveal a putative defence-transcriptome in Norway spruce (Picea abies) against needle bladder rust (Chrysomyxa rhododendri) infection
Q92706617	RNA-Seq approach for accurate characterization of splicing efficiency of yeast introns
Q30421087	RNA-Seq approach for genetic improvement of meat quality in pig and evolutionary insight into the substrate specificity of animal carbonyl reductases
Q39435103	RNA-Seq as a Tool to Study the Tumor Microenvironment
Q98386073	RNA-Seq based genetic variant discovery provides new insights into controlling fat deposition in the tail of sheep
Q33687763	RNA-Seq based genome-wide analysis reveals loss of inter-chromosomal regulation in breast cancer
Q35755293	RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications
Q90938506	RNA-Seq based transcriptome analysis during bovine viral diarrhoea virus (BVDV) infection
Q90707824	RNA-Seq based transcriptome analysis reveals the molecular mechanism of triterpenoid biosynthesis in Glycyrrhiza glabra
Q55346288	RNA-Seq based transcriptome of whole blood from immunocompetent pigs (Sus scrofa) experimentally infected with Mycoplasma suis strain Illinois.
Q57815659	RNA-Seq blood transcriptome profiling in familial attention deficit and hyperactivity disorder (ADHD)
Q85933411	RNA-Seq bulked segregant analysis enables the identification of high-resolution genetic markers for breeding in hexaploid wheat
Q91028050	RNA-Seq comparative analysis reveals the response of Enterococcus faecalis TV4 under fluoride exposure
Q30882224	RNA-Seq data mining: downregulation of NeuroD6 serves as a possible biomarker for alzheimer's disease brains
Q55062644	RNA-Seq data on prefrontal cortex in valproic acid model of autism and control rats.
Q34555171	RNA-Seq data: a goldmine for organelle research
Q93127339	RNA-Seq de Novo Assembly and Differential Transcriptome Analysis of Chaga (Inonotus obliquus) Cultured with Different Betulin Sources and the Regulation of Genes Involved in Terpenoid Biosynthesis
Q42778394	RNA-Seq de novo assembly and differential transcriptome analysis of the nematode Ascaridia galli in relation to in vivo exposure to flubendazole
Q36105769	RNA-Seq defines novel genes, RNA processing patterns and enhancer maps for the early stages of nephrogenesis: Hox supergenes
Q35081458	RNA-Seq derived identification of differential transcription in the chrysanthemum leaf following inoculation with Alternaria tenuissima
Q64264987	RNA-Seq detects a SAMD12-EXT1 fusion transcript and leads to the discovery of an EXT1 deletion in a child with multiple osteochondromas
Q47267623	RNA-Seq differential expression analysis: An extended review and a software tool
Q34975585	RNA-Seq effectively monitors gene expression in Eutrema salsugineum plants growing in an extreme natural habitat and in controlled growth cabinet conditions.
Q91723212	RNA-Seq employing a novel rRNA depletion strategy reveals a rich repertoire of snoRNAs in Euglena gracilis including box C/D and Ψ-guide RNAs targeting the modification of rRNA extremities
Q51007291	RNA-Seq facilitates a new perspective on signal transduction and gene regulation in important plant pathogens.
Q36020424	RNA-Seq following PCR-based sorting reveals rare cell transcriptional signatures
Q89174682	RNA-Seq for Bacterial Gene Expression
Q37740482	RNA-Seq for Gene Expression Profiling of Human Necrotizing Enterocolitis: a Pilot Study
Q37590464	RNA-Seq for Plant Pathogenic Bacteria
Q34563170	RNA-Seq for enrichment and analysis of IRF5 transcript expression in SLE.
Q33941520	RNA-Seq for gene identification and transcript profiling of three Stevia rebaudiana genotypes
Q42775190	RNA-Seq for the identification of novel Mediator transcripts in endothelial progenitor cells
Q45896804	RNA-Seq for transcriptome analysis in non-model plants
Q42918161	RNA-Seq gene expression estimation with read mapping uncertainty
Q35229198	RNA-Seq gene expression profiling of HepG2 cells: the influence of experimental factors and comparison with liver tissue.
Q35288892	RNA-Seq gene profiling--a systematic empirical comparison
Q47189006	RNA-Seq highlights high clonal variation in monoclonal antibody producing CHO cells.
Q92807857	RNA-Seq identification of candidate defense genes by analyzing Mythimna separata feeding-damage induced systemic resistance in balsas teosinte
Q88601833	RNA-Seq identification of candidate defense genes targeted by endophytic Bacillus cereus-mediated induced systemic resistance against Meloidogyne incognita in tomato
Q34264612	RNA-Seq identifies SNP markers for growth traits in rainbow trout
Q42772684	RNA-Seq identifies SPGs as a ventral skeletal patterning cue in sea urchins
Q99726225	RNA-Seq identifies condition-specific biological signatures of ischemia-reperfusion injury in the human kidney
Q55003034	RNA-Seq identifies genes whose proteins are transformative in the differentiation of cytotrophoblast to syncytiotrophoblast, in human primary villous and BeWo trophoblasts.
Q104751383	RNA-Seq identifies genes whose proteins are upregulated during syncytia development in murine C2C12 myoblasts and human BeWo trophoblasts
Q33757905	RNA-Seq identifies key reproductive gene expression alterations in response to cadmium exposure
Q36384754	RNA-Seq identifies novel myocardial gene expression signatures of heart failure
Q38441131	RNA-Seq identifies redox balance related gene expression alterations under acute cadmium exposure in yeast
Q34065318	RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
Q64904210	RNA-Seq in 296 phased trios provides a high-resolution map of genomic imprinting.
Q35785887	RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues.
Q39117069	RNA-Seq in the Collaborative Cross
Q89282651	RNA-Seq in the discovery of a sparsely expressed scent-determining monoterpene synthase in lavender (Lavandula)
Q48142822	RNA-Seq investigation and in vivo study the effect of strontium ranelate on ovariectomized rat via the involvement of ROCK1.
Q38682930	RNA-Seq investigations of human post-mortem trigeminal ganglia.
Q112705500	RNA-Seq is not required to determine stable reference genes for qPCR normalization
Q34229580	RNA-Seq mapping and detection of gene fusions with a suffix array algorithm
Q38456504	RNA-Seq mediated root transcriptome analysis of Chlorophytum borivilianum for identification of genes involved in saponin biosynthesis
Q46949735	RNA-Seq methods for imperfect samples: development, evaluation and applications
Q26747608	RNA-Seq methods for transcriptome analysis
Q28299505	RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation
Q36153900	RNA-Seq of Borrelia burgdorferi in Multiple Phases of Growth Reveals Insights into the Dynamics of Gene Expression, Transcriptome Architecture, and Noncoding RNAs
Q88990279	RNA-Seq of Circulating Tumor Cells in Stage II-III Breast Cancer
Q37620016	RNA-Seq of Guar (Cyamopsis tetragonoloba, L. Taub.) Leaves: De novo Transcriptome Assembly, Functional Annotation and Development of Genomic Resources
Q42777677	RNA-Seq of Human Neural Progenitor Cells Exposed to Lead (Pb) Reveals Transcriptome Dynamics, Splicing Alterations and Disease Risk Associations.
Q37530090	RNA-Seq of Huntington's disease patient myeloid cells reveals innate transcriptional dysregulation associated with proinflammatory pathway activation.
Q47551073	RNA-Seq of Kaposi's sarcoma reveals alterations in glucose and lipid metabolism
Q64229096	RNA-Seq of Liver From Pigs Divergent in Feed Efficiency Highlights Shifts in Macronutrient Metabolism, Hepatic Growth and Immune Response
Q47138235	RNA-Seq of Plant-Parasitic Nematode Meloidogyne incognita at Various Stages of Its Development
Q36278318	RNA-Seq of Tumor-Educated Platelets Enables Blood-Based Pan-Cancer, Multiclass, and Molecular Pathway Cancer Diagnostics
Q34406699	RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter
Q34510318	RNA-Seq of human breast ductal carcinoma in situ models reveals aldehyde dehydrogenase isoform 5A1 as a novel potential target
Q34018852	RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders
Q91892279	RNA-Seq of human whole blood: Evaluation of globin RNA depletion on Ribo-Zero library method
Q98649666	RNA-Seq of human whole blood: Evaluation of globin RNA depletion on Ribo-Zero library method
Q90330436	RNA-Seq of in planta-expressed Magnaporthe oryzae genes identifies MoSVP as a highly expressed gene required for pathogenicity at the initial stage of infection
Q34494714	RNA-Seq of single prostate CTCs implicates noncanonical Wnt signaling in antiandrogen resistance.
Q35939268	RNA-Seq of the Caribbean reef-building coral Orbicella faveolata (Scleractinia-Merulinidae) under bleaching and disease stress expands models of coral innate immunity
Q34156245	RNA-Seq of the nucleolus reveals abundant SNORD44-derived small RNAs
Q42625121	RNA-Seq of the xylose-fermenting yeast Scheffersomyces stipitis cultivated in glucose or xylose
Q97418168	RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes
Q30564266	RNA-Seq optimization with eQTL gold standards
Q34986139	RNA-Seq profile of flavescence dorée phytoplasma in grapevine.
Q61799556	RNA-Seq profiling in peripheral blood mononuclear cells of amyotrophic lateral sclerosis patients and controls
Q33609987	RNA-Seq profiling of a defective seed coat mutation in Glycine max reveals differential expression of proline-rich and other cell wall protein transcripts
Q93104162	RNA-Seq profiling of circular RNA in human lung adenocarcinoma and squamous cell carcinoma
Q64230064	RNA-Seq profiling of circular RNAs and potential function of hsa_circ_0002360 in human lung adenocarcinom
Q60912711	RNA-Seq profiling of circular RNAs in human colorectal Cancer liver metastasis and the potential biomarkers
Q112280816	RNA-Seq profiling of circular RNAs in human colorectal cancer 5-fluorouracil resistance and potential biomarkers
Q52715010	RNA-Seq profiling of circular RNAs in human laryngeal squamous cell carcinomas.
Q89806745	RNA-Seq profiling of circular RNAs in human small cell lung cancer
Q92609636	RNA-Seq profiling of deregulated miRs in CLL and their impact on clinical outcome
Q100495507	RNA-Seq profiling of leukocytes reveals a sex-dependent global circular RNA upregulation in multiple sclerosis and 6 candidate biomarkers
Q35538309	RNA-Seq profiling of single bovine oocyte transcript abundance and its modulation by cytoplasmic polyadenylation
Q27321207	RNA-Seq profiling of spinal cord motor neurons from a presymptomatic SOD1 ALS mouse
Q42216386	RNA-Seq profiling reveals aberrant RNA splicing in patient with adult acute myeloid leukemia during treatment
Q27324185	RNA-Seq profiling reveals novel hepatic gene expression pattern in aflatoxin B1 treated rats
Q99614367	RNA-Seq profiling reveals the plant hormones and molecular mechanisms stimulating the early ripening in apple
Q34378722	RNA-Seq provides new insights in the transcriptome responses induced by the carcinogen benzo[a]pyrene
Q91121059	RNA-Seq provides new insights on the relative mRNA abundance of antioxidant components during mouse liver development
Q34178271	RNA-Seq quantification of the human small airway epithelium transcriptome
Q91925412	RNA-Seq reveal the circular RNAs landscape of lung cancer
Q47441656	RNA-Seq revealed ATF3-regulated inflammation induced by silica
Q91240834	RNA-Seq revealed that infection with white tip nematodes could downregulate rice photosynthetic genes
Q31112344	RNA-Seq revealed the impairment of immune defence of tilapia against the infection of Streptococcus agalactiae with simulated climate warming
Q27349350	RNA-Seq reveals 10 novel promising candidate genes affecting milk protein concentration in the Chinese Holstein population.
Q38613303	RNA-Seq reveals MicroRNA expression signature and genetic polymorphism associated with growth and muscle quality traits in rainbow trout.
Q47816088	RNA-Seq reveals a central role for lectin, C1q and von Willebrand factor A domains in the defensive glue of a terrestrial slug
Q35548463	RNA-Seq reveals a role for NFAT-signaling in human retinal microvascular endothelial cells treated with TNFα.
Q34891950	RNA-Seq reveals a xenobiotic stress response in the soybean aphid, Aphis glycines, when fed aphid-resistant soybean
Q34064894	RNA-Seq reveals an integrated immune response in nucleated erythrocytes.
Q36058641	RNA-Seq reveals changes in the Staphylococcus aureus transcriptome following blue light illumination
Q35998854	RNA-Seq reveals common and unique PXR- and CAR-target gene signatures in the mouse liver transcriptome
Q34413238	RNA-Seq reveals complex genetic response to Deepwater Horizon oil release in Fundulus grandis
Q35969277	RNA-Seq reveals different mRNA abundance of transporters and their alternative transcript isoforms during liver development
Q89599496	RNA-Seq reveals differential expression profiles and functional annotation of genes involved in retinal degeneration in Pde6c mutant Danio rerio
Q35014723	RNA-Seq reveals differential gene expression in Staphylococcus aureus with single-nucleotide resolution
Q52315635	RNA-Seq reveals differentially expressed genes affecting polyunsaturated fatty acids percentage in the Huangshan Black chicken population.
Q34522541	RNA-Seq reveals differentially expressed isoforms and novel splice variants in buccal mucosal cancer
Q111894671	RNA-Seq reveals divergent gene expression between larvae with contrasting trophic modes in the poecilogonous polychaete Boccardia wellingtonensis
Q34924369	RNA-Seq reveals dynamic changes of gene expression in key stages of intestine regeneration in the sea cucumber Apostichopus japonicus. [corrected].
Q30551099	RNA-Seq reveals early distinctions and late convergence of gene expression between diapause and quiescence in the Asian tiger mosquito, Aedes albopictus
Q30620642	RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish
Q34065123	RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus
Q35133671	RNA-Seq reveals infection-induced gene expression changes in the snail intermediate host of the carcinogenic liver fluke, Opisthorchis viverrini
Q31138029	RNA-Seq reveals infection-related gene expression changes in Phytophthora capsici
Q34082263	RNA-Seq reveals infection-related global gene changes in Phytophthora phaseoli, the causal agent of lima bean downy mildew
Q99200971	RNA-Seq reveals inflammatory mechanisms of Xiao-Ban-Xia-Tang decoction to ameliorate cisplatin-induced emesis in a rat pica model
Q55380958	RNA-Seq reveals large quantitative differences between the transcriptomes of outbreak and non-outbreak locusts.
Q34557577	RNA-Seq reveals leaf cuticular wax-related genes in Welsh onion
Q64254597	RNA-Seq reveals new DELLA targets and regulation in transgenic GA-insensitive grapevines
Q89518433	RNA-Seq reveals novel genes and pathways associated with hypoxia duration and tolerance in tomato root
Q90427468	RNA-Seq reveals novel genes and pathways involved in bovine mammary involution during the dry period and under environmental heat stress
Q34711458	RNA-Seq reveals novel transcriptional reorganization in human alcoholic brain.
Q98566520	RNA-Seq reveals placental growth factor regulates the human retinal endothelial cell barrier integrity by transforming growth factor (TGF-β) signaling
Q47148349	RNA-Seq reveals seven promising candidate genes affecting the proportion of thick egg albumen in layer-type chickens.
Q34998533	RNA-Seq reveals spliceosome and proteasome genes as most consistent transcripts in human cancer cells
Q59513409	RNA-Seq reveals that mitochondrial genes and long non-coding RNAs may play important roles in the bivoltine generations of the non-social Neotropical bee Tetrapedia diversipes
Q87497354	RNA-Seq reveals the dynamic and diverse features of digestive enzymes during early development of Pacific white shrimp Litopenaeus vannamei
Q52691327	RNA-Seq reveals the existence of a CDKN1C-E2F1-TP53 axis that is altered in human T-cell lymphoblastic lymphomas.
Q38929130	RNA-Seq reveals the molecular mechanism of trapping and killing of root-knot nematodes by nematode-trapping fungi.
Q40722668	RNA-Seq reveals transcriptomic interactions of Bacillus subtilis natto and Bifidobacterium animalis subsp. lactis in whole soybean solid-state co-fermentation.
Q40567303	RNA-Seq reveals virus-virus and virus-plant interactions in nature.
Q32173487	RNA-Seq study reveals genetic responses of diverse wild soybean accessions to increased ozone levels
Q26825688	RNA-Seq technology and its application in fish transcriptomics
Q54980747	RNA-Seq transcriptome analysis of Amaranthus palmeri with differential tolerance to glufosinate herbicide.
Q41974354	RNA-Seq transcriptome analysis of Spirodela dormancy without reproduction
Q59803591	RNA-Seq transcriptome analysis of breast muscle in Pekin ducks supplemented with the dietary probiotic Clostridium butyricum
Q38465608	RNA-Seq transcriptome analysis of maize inbred carrying nicosulfuron-tolerant and nicosulfuron-susceptible alleles
Q38767847	RNA-Seq transcriptome analysis of the olive flounder (Paralichthys olivaceus) kidney response to vaccination with heat-inactivated viral hemorrhagic septicemia virus
Q61806619	RNA-Seq transcriptome analysis shows anti-tumor actions of melatonin in a breast cancer xenograft model
Q104567619	RNA-Seq transcriptome analysis to identify candidate genes involved in non-target site-based mesosulfuron-methyl resistance in Beckmannia syzigachne
Q87489146	RNA-Seq transcriptome analysis to identify genes involved in metabolism-based diclofop resistance in Lolium rigidum
Q104472547	RNA-Seq transcriptome data of human cells infected with influenza A/Puerto Rico/8/1934 (H1N1) virus
Q96304942	RNA-Seq transcriptome data of undifferentiated and differentiated gonads of Siberian sturgeon
Q33753415	RNA-Seq transcriptome profiling identifies CRISPLD2 as a glucocorticoid responsive gene that modulates cytokine function in airway smooth muscle cells
Q91595080	RNA-Seq transcriptome profiling in three liver regeneration models in rats: comparative analysis of partial hepatectomy, ALLPS, and PVL
Q42378958	RNA-Seq transcriptome profiling of mouse oocytes after in vitro maturation and/or vitrification
Q35064265	RNA-Seq transcriptome profiling of upland cotton (Gossypium hirsutum L.) root tissue under water-deficit stress
Q97523836	RNA-Seq transcriptome reveals different molecular responses during human and mouse oocyte maturation and fertilization
Q47221726	RNA-Seq transcriptomic analysis of the Morus alba L. leaves exposed to high-level UVB with or without dark treatment
Q28607051	RNA-Seq transcriptomic analysis with Bag2D software identifies key pathways enhancing lipid yield in a high lipid-producing mutant of the non-model green alga Dunaliella tertiolecta
Q58091890	RNA-Seq transcriptomic profiling of primary murine microglia treated with LPS or LPS + IFNγ
Q36322433	RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high- and low-residual feed intake in Nordic dairy cattle
Q51549182	RNA-Seq unleashed.
Q38775304	RNA-Seq unveils new attributes of the heterogeneous Salmonella-host cell communication
Q104694491	RNA-Seq used to identify ipsdienone reductase (IDONER): A novel monoterpene carbon-carbon double bond reductase central to Ips confusus pheromone production
Q41387394	RNA-Seq using bulked recombinant inbred line populations uncovers the importance of brassinosteroid for seed longevity after priming treatments
Q33812593	RNA-Seq using two populations reveals genes and alleles controlling wood traits and growth in Eucalyptus nitens
Q35626105	RNA-Seq versus oligonucleotide array assessment of dose-dependent TCDD-elicited hepatic gene expression in mice
Q30582276	RNA-Seq vs dual- and single-channel microarray data: sensitivity analysis for differential expression and clustering
Q112282519	RNA-Seq with a novel glabrous-ZM24fl reveals some key lncRNAs and the associated targets in fiber initiation of cotton
Q40204689	RNA-Seq workflow: gene-level exploratory analysis and differential expression
Q112700745	RNA-Seq, Bioinformatic Identification of Potential MicroRNA-like Small RNAs in the Edible Mushroom Agaricus bisporus and Experimental Approach for Their Validation
Q89316611	RNA-Seq, and ye shall find: Sexual-stage-specific A-to-I RNA editing in fungi
Q57791502	RNA-Seq-Based Analysis Reveals Heterogeneity in Mature 16S rRNA 3' Termini and Extended Anti-Shine-Dalgarno Motifs in Bacterial Species
Q101575540	RNA-Seq-Based Breast Cancer Subtypes Classification Using Machine Learning Approaches
Q91252721	RNA-Seq-Based Comparative Transcriptome Analysis Highlights New Features of the Heat-Stress Response in the Extremophilic Bacterium Deinococcus radiodurans
Q38677975	RNA-Seq-Based Comparative Transcriptomics: RNA Preparation and Bioinformatics.
Q64886183	RNA-Seq-Based Gene Expression Pattern and Morphological Alterations in Chick Thymus during Postnatal Development.
Q94925808	RNA-Seq-Based TCR Profiling Reveals Persistently Increased Intratumoral Clonality in Responders to Anti-PD-1 Therapy
Q54261657	RNA-Seq-Based Transcript Structure Analysis with TrBorderExt.
Q38976894	RNA-Seq-Based Transcriptome Analysis of Changes in Gene Expression Linked to Human Pregnancy Outcome After In Vitro Fertilization-Embryo Transfer
Q103810750	RNA-Seq-Based Transcriptomic Analysis of Saccharopolyspora spinosa Revealed the Critical Function of PEP Phosphonomutase in the Replenishment Pathway
Q112278648	RNA-Seq-Based Transcriptomics Study to Investigate the Genes Governing Nitrogen Use Efficiency in Indian Wheat Cultivars
Q99237945	RNA-Seq-Based Whole Transcriptome Analysis of IPEC-J2 Cells During Swine Acute Diarrhea Syndrome Coronavirus Infection
Q35962408	RNA-Seq-Mediated Transcriptome Analysis of a Fiberless Mutant Cotton and Its Possible Origin Based on SNP Markers
Q39603179	RNA-Seq-based analysis of changes in Borrelia burgdorferi gene expression linked to pathogenicity
Q35131150	RNA-Seq-based analysis of cold shock response in Thermoanaerobacter tengcongensis, a bacterium harboring a single cold shock protein encoding gene
Q38441459	RNA-Seq-based analysis of differential gene expression associated with hepatitis C virus infection in a cell culture.
Q41296747	RNA-Seq-based analysis of the physiologic cold shock-induced changes in Moraxella catarrhalis gene expression
Q66761695	RNA-Seq-based assessment for genome annotation databases
Q112312847	RNA-Seq-based high-resolution linkage map reveals the genetic architecture of fruiting body development in shiitake mushroom, Lentinula edodes
Q33993574	RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression.
Q35401743	RNA-Seq-based toxicogenomic assessment of fresh frozen and formalin-fixed tissues yields similar mechanistic insights
Q46891953	RNA-Seq-based transcriptional map of the bovine respiratory disease pathogen Histophilus somni 2336.
Q46709604	RNA-Seq-based transcriptome analysis of Korean rose bitterling (Rhodeus uyekii) exposed to synthetic estrogen 17-α-ethinylestradiol (EE2).
Q34585013	RNA-Seq-based transcriptome analysis of aflatoxigenic Aspergillus flavus in response to water activity
Q38469832	RNA-Seq-based transcriptome analysis of dormant flower buds of Chinese cherry (Prunus pseudocerasus).
Q33813600	RNA-Seq-based transcriptome analysis of methicillin-resistant Staphylococcus aureus biofilm inhibition by ursolic acid and resveratrol
Q58568385	RNA-Seq-based transcriptome analysis of reproduction- and growth-related genes in Lateolabrax japonicus ovaries at four different ages
Q40271555	RNA-Seq-based transcriptome analysis of stem development and dwarfing regulation in Agapanthus praecox ssp. orientalis (Leighton) Leighton
Q38435495	RNA-Seq-based transcriptome and the reproduction-related genes for the aphid Schlechtendalia chinensis (Hemiptera, Aphididae).
Q91342564	RNA-Seq-based transcriptome profiling and expression of 16 cytochrome P450 genes in the benzo[α]pyrene-exposed estuarine copepod Eurytemora affinis
Q38470016	RNA-Seq-based transcriptome profiling of early nitrogen deficiency response in cucumber seedlings provides new insight into the putative nitrogen regulatory network.
Q37648644	RNA-Seq-based transcriptomic and metabolomic analysis reveal stress responses and programmed cell death induced by acetic acid in Saccharomyces cerevisiae
Q92127717	RNA-Seq-based transcriptomic profiling of primary interstitial cells of Cajal in response to bovine viral diarrhea virus infection
Q50148172	RNA-Seq-derived identification of differential transcription in the eggplant (Solanum melongena) following inoculation with bacterial wilt.
Q34658292	RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing
Q35568660	RNA-Seq: Improving Our Understanding of Retinal Biology and Disease
Q36179736	RNA-Seq: RNA Conversion to cDNA and Amplification
Q42772579	RNA-Seq: a method for comprehensive transcriptome analysis
Q24596169	RNA-Seq: a revolutionary tool for transcriptomics
Q34332359	RNA-Seq: revelation of the messengers
Q120755645	RNA-Sequencing Combined With Genome-Wide Allele-Specific Expression Patterning Identifies ZNF44 Variants as a Potential New Driver Gene for Pediatric Neuroblastoma
Q33760378	RNA-Skim: a rapid method for RNA-Seq quantification at transcript level
Q30587551	RNA-eXpress annotates novel transcript features in RNA-seq data.
Q58804900	RNA-seq Analysis Reveals Gene Expression Profiling of Female Fertile and Sterile Ovules of Carr. during Free Nuclear Mitosis of the Female Gametophyte
Q104512350	RNA-seq Analysis Reveals Mitochondrial and Cuticular Protein Genes Are Associated with Phosphine Resistance in the Rusty Grain Beetle (Coleoptera:Laemophloeidae)
Q36190001	RNA-seq Analysis Reveals Unique Transcriptome Signatures in Systemic Lupus Erythematosus Patients with Distinct Autoantibody Specificities
Q91982878	RNA-seq Analysis of Clitea metallica (Coleoptera: Chrysomelidae), Provides Insights Into Cuticle-Related Genes and miRNAs
Q37627074	RNA-seq Analysis of Cold and Drought Responsive Transcriptomes of Zea mays ssp. mexicana L.
Q36632495	RNA-seq Analysis of Irrigated vs. Water Stressed Transcriptomes of Zea mays Cultivar Z59.
Q43097309	RNA-seq Analysis of Nepenthes ampullaria
Q37261867	RNA-seq Analysis of Overexpressing Ovine AANAT Gene of Melatonin Biosynthesis in Switchgrass
Q92327359	RNA-seq Analysis of Salt-Stressed Versus Non Salt-Stressed Transcriptomes of Chenopodium quinoa Landrace R49
Q90347596	RNA-seq Analysis of Wild-Type vs. FOXC2-Deficient Melanoma Cells Reveals a Role for the FOXC2 Transcription Factor in the Regulation of Multiple Oncogenic Pathways
Q90357043	RNA-seq Analysis of the SCN1A-KO Model based on CRISPR/Cas9 Genome Editing Technology
Q37117257	RNA-seq Analysis of δ9-Tetrahydrocannabinol-treated T Cells Reveals Altered Gene Expression Profiles That Regulate Immune Response and Cell Proliferation
Q45943536	RNA-seq Based Transcription Characterization of Fusion Breakpoints as a Potential Estimator for Its Oncogenic Potential.
Q89993868	RNA-seq Based Transcriptome Analysis of the Anti-Obesity Effect of Green Tea Extract Using Zebrafish Obesity Models
Q35839664	RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium
Q30856802	RNA-seq Data: Challenges in and Recommendations for Experimental Design and Analysis
Q38774931	RNA-seq Identification of RACGAP1 as a Metastatic Driver in Uterine Carcinosarcoma
Q35760589	RNA-seq Profiles of Immune Related Genes in the Spleen of Necrotic Enteritis-afflicted Chicken Lines
Q28817088	RNA-seq Profiling Reveals Defense Responses in a Tolerant Potato Cultivar to Stem Infection by Pectobacterium carotovorum ssp. brasiliense
Q38552546	RNA-seq Profiling Reveals Novel Target Genes of LexA in the Cyanobacterium Synechocystis sp. PCC 6803.
Q96345194	RNA-seq Profiling Showed Divergent Carbohydrate-Active Enzymes (CAZymes) Expression Patterns in Lentinula edodes at Brown Film Formation Stage Under Blue Light Induction
Q90575396	RNA-seq Profiling and Co-expression Network Analysis of Long Noncoding RNAs and mRNAs Reveal Novel Pathogenesis of Noise-induced Hidden Hearing Loss
Q35686745	RNA-seq Reveals Complicated Transcriptomic Responses to Drought Stress in a Nonmodel Tropic Plant, Bombax ceiba L.
Q92219993	RNA-seq Reveals Dysregulation of Novel Melanocyte Genes upon Oxidative Stress: Implications in Vitiligo Pathogenesis
Q50945401	RNA-seq Reveals Transcriptomic Differences in Inflamed and Noninflamed Intestinal Mucosa of Crohn's Disease Patients Compared with Normal Mucosa of Healthy Controls.
Q52581831	RNA-seq Reveals the Overexpression of IGSF9 in Endometrial Cancer.
Q41500011	RNA-seq SSRs and small RNA-seq SSRs: new approaches in cancer biomarker discovery
Q34085200	RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis
Q40283110	RNA-seq Transcriptional Profiling of an Arbuscular Mycorrhiza Provides Insights into Regulated and Coordinated Gene Expression in Lotus japonicus and Rhizophagus irregularis.
Q64956943	RNA-seq Transcriptome Analysis in Ovarian Tissue of Pelibuey Breed to Explore the Regulation of Prolificacy.
Q36789169	RNA-seq Transcriptome Analysis of Panax japonicus, and Its Comparison with Other Panax Species to Identify Potential Genes Involved in the Saponins Biosynthesis
Q37433419	RNA-seq Transcriptome Response of Flax (Linum usitatissimum L.) to the Pathogenic Fungus Fusarium oxysporum f. sp. lini.
Q99602564	RNA-seq Used to Explore circRNA Expression and Identify Key circRNAs During the DNA Synthesis Phase of Mice Liver Regeneration
Q99417442	RNA-seq accuracy and reproducibility for the mapping and quantification of influenza defective viral genomes
Q91220965	RNA-seq analyses of Arabidopsis thaliana seedlings after exposure to blue-light phototropic stimuli in microgravity
Q24617913	RNA-seq analyses of blood-induced changes in gene expression in the mosquito vector species, Aedes aegypti
Q38475100	RNA-seq analyses of cellular responses to elevated body temperature in the high Antarctic cryopelagic nototheniid fish Pagothenia borchgrevinki
Q36070881	RNA-seq analyses of changes in the Anopheles gambiae transcriptome associated with resistance to pyrethroids in Kenya: identification of candidate-resistance genes and candidate-resistance SNPs
Q34981945	RNA-seq analyses of gene expression in the microsclerotia of Verticillium dahliae
Q33358634	RNA-seq analyses of multiple meristems of soybean: novel and alternative transcripts, evolutionary and functional implications
Q37399967	RNA-seq analyses of the midgut from blood- and serum-fed Ixodes ricinus ticks.
Q39670571	RNA-seq analyses reveal insights into the function of respiratory nitrate reductase of the diazotroph Herbaspirillum seropedicae.
Q30252396	RNA-seq analyses reveal that cervical spinal cords and anterior motor neurons from amyotrophic lateral sclerosis subjects show reduced expression of mitochondrial DNA-encoded respiratory genes, and rhTFAM may correct this respiratory deficiency.
Q90613456	RNA-seq analyses the effect of high-salt diet in hypertension
Q112974268	RNA-seq analysis
Q94518901	RNA-seq analysis and compound screening highlight multiple signalling pathways regulating secondary cell death after acute CNS injury in vivo
Q34465972	RNA-seq analysis and de novo transcriptome assembly of Jerusalem artichoke (Helianthus tuberosus Linne).
Q64914235	RNA-seq analysis and fluorescence imaging of melon powdery mildew disease reveal an orchestrated reprogramming of host physiology.
Q112725325	RNA-seq analysis and gene expression dynamics in the salivary glands of the argasid tick Ornithodoros erraticus along the trophogonic cycle
Q36793209	RNA-seq analysis for detecting quantitative trait-associated genes
Q38782510	RNA-seq analysis for plant carnivory gene discovery in Nepenthes × ventrata.
Q38782686	RNA-seq analysis for secondary metabolite pathway gene discovery in Polygonum minus.
Q92041087	RNA-seq analysis identified hormone-related genes associated with prognosis of triple negative breast cancer
Q33358115	RNA-seq analysis identifies an intricate regulatory network controlling cluster root development in white lupin
Q101568655	RNA-seq analysis identifies cytoskeletal structural genes and pathways for meat quality in beef
Q59591338	RNA-seq analysis identifies different transcriptomic types and developmental trajectories of primary melanomas
Q39326192	RNA-seq analysis identifies key long non-coding RNAs connected to the pathogenesis of alcohol-associated head and neck squamous cell carcinoma
Q35094995	RNA-seq analysis identifies new genes regulated by the histone-like nucleoid structuring protein (H-NS) affecting Vibrio cholerae virulence, stress response and chemotaxis.
Q42773429	RNA-seq analysis identifies potential modulators of gravity response in spores of Ceratopteris (Parkeriaceae): evidence for modulation by calcium pumps and apyrase activity
Q91989856	RNA-seq analysis in equine papillomavirus type 2-positive carcinomas identifies affected pathways and potential cancer markers as well as viral gene expression and splicing events
Q59280342	RNA-seq analysis in forest tree species: bioinformatic problems and solutions
Q37077625	RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR.
Q38504575	RNA-seq analysis of 2 closely related leukemia clones that differ in their self-renewal capacity.
Q36275243	RNA-seq analysis of Drosophila clock and non-clock neurons reveals neuron-specific cycling and novel candidate neuropeptides
Q91561193	RNA-seq analysis of LPS-induced transcriptional changes and its possible implications for the adrenal gland dysregulation during sepsis
Q42516474	RNA-seq analysis of Lgr6(+) stem cells and identification of an Lgr6 isoform.
Q35544706	RNA-seq analysis of Macrobrachium rosenbergii hepatopancreas in response to Vibrio parahaemolyticus infection.
Q64244987	RNA-seq analysis of PHD and VHL inhibitors reveals differences and similarities to the hypoxia response
Q91215026	RNA-seq analysis of Paris polyphylla var. yunnanensis roots identified candidate genes for saponin synthesis
Q40533212	RNA-seq analysis of Pichia anomala reveals important mechanisms required for survival at low pH
Q34506382	RNA-seq analysis of Quercus pubescens Leaves: de novo transcriptome assembly, annotation and functional markers development
Q38474805	RNA-seq analysis of Rubus idaeus cv. Nova: transcriptome sequencing and de novo assembly for subsequent functional genomics approaches
Q112721277	RNA-seq analysis of ageing human retinal pigment epithelium: Unexpected up-regulation of visual cycle gene transcription
Q37061818	RNA-seq analysis of allele-specific expression, hybrid effects, and regulatory divergence in hybrids compared with their parents from natural populations
Q38429862	RNA-seq analysis of amygdala tissue reveals characteristic expression profiles in schizophrenia
Q33360947	RNA-seq analysis of an apical meristem time series reveals a critical point in Arabidopsis thaliana flower initiation
Q42774227	RNA-seq analysis of antibiotic-producing Bacillus subtilis SC-8 in response to signal peptide PapR of Bacillus cereus
Q41581629	RNA-seq analysis of apical meristem reveals integrative regulatory network of ROS and chilling potentially related to flowering in Litchi chinensis
Q64948209	RNA-seq analysis of blood of valproic acid-responsive and non-responsive pediatric patients with epilepsy.
Q58713741	RNA-seq analysis of bovine adipose tissue in heifers fed diets differing in energy and protein content
Q42774497	RNA-seq analysis of bovine intramuscular, subcutaneous and perirenal adipose tissues
Q34986547	RNA-seq analysis of broiler liver transcriptome reveals novel responses to high ambient temperature
Q92691268	RNA-seq analysis of chondrocyte transcriptome reveals genetic heterogeneity in LG/J and SM/J murine strains
Q37194792	RNA-seq analysis of clinical-grade osteochondral allografts reveals activation of early response genes.
Q38292856	RNA-seq analysis of developing olfactory bulb projection neurons
Q91346365	RNA-seq analysis of diet-driven obesity and anti-obesity effects of quercetin glucoside or epigallocatechin gallate in Drosophila adults
Q92412422	RNA-seq analysis of different inflammatory reactions induced by lipopolysaccharide and lipoteichoic acid in bovine mammary epithelial cells
Q34274259	RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance
Q40701110	RNA-seq analysis of early enteromyxosis in turbot (Scophthalmus maximus): new insights into parasite invasion and immune evasion strategies
Q35099579	RNA-seq analysis of early hepatic response to handling and confinement stress in rainbow trout
Q34713087	RNA-seq analysis of equine conceptus transcripts during embryo fixation and capsule disappearance.
Q99415016	RNA-seq analysis of galaninergic neurons from ventrolateral preoptic nucleus identifies expression changes between sleep and wake
Q33834393	RNA-seq analysis of gene expression and alternative splicing by double-random priming strategy
Q58706957	RNA-seq analysis of gene expression changes during pupariation in Bactrocera dorsalis (Hendel) (Diptera: Tephritidae)
Q98614563	RNA-seq analysis of gene expression profiles in isolated stria vascularis from wild-type and Alport mice reveals key pathways underling Alport strial pathogenesis
Q36110900	RNA-seq analysis of glycosylation related gene expression in STZ-induced diabetic rat kidney inner medulla
Q60918532	RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed
Q39839047	RNA-seq analysis of hippocampal tissues reveals novel candidate genes for drug refractory epilepsy in patients with MTLE-HS.
Q37534033	RNA-seq analysis of host and viral gene expression highlights interaction between varicella zoster virus and keratinocyte differentiation.
Q38792093	RNA-seq analysis of impact of PNN on gene expression and alternative splicing in corneal epithelial cells
Q58799398	RNA-seq analysis of lignocellulose-related genes in hybrid Eucalyptus with contrasting wood basic density
Q54943472	RNA-seq analysis of lncRNA-controlled developmental gene expression during puberty in goat & rat.
Q93056223	RNA-seq analysis of local tissue of Carassius auratus gibelio with pharyngeal myxobolosis: Insights into the pharyngeal mucosal immune response in a fish-parasite dialogue
Q36359897	RNA-seq analysis of lung adenocarcinomas reveals different gene expression profiles between smoking and nonsmoking patients.
Q92529579	RNA-seq analysis of molecular heterogeneity peripheral blood mononuclear cells in systemic lupus erythematosus
Q39390240	RNA-seq analysis of mucosal immune responses reveals signatures of intestinal barrier disruption and pathogen entry following Edwardsiella ictaluri infection in channel catfish, Ictalurus punctatus
Q34640459	RNA-seq analysis of oil palm under cold stress reveals a different C-repeat binding factor (CBF) mediated gene expression pattern in Elaeis guineensis compared to other species
Q96618136	RNA-seq analysis of palatal transcriptome changes in all-trans retinoic acid-induced cleft palate of mice
Q93231200	RNA-seq analysis of potential lncRNAs for age-related hearing loss in a mouse model
Q35932349	RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant alternative splicings
Q35155428	RNA-seq analysis of short fiber mutants Ligon-lintless-1 (Li 1 ) and - 2 (Li 2 ) revealed important role of aquaporins in cotton (Gossypium hirsutum L.) fiber elongation
Q28684802	RNA-seq analysis of single bovine blastocysts
Q34041460	RNA-seq analysis of small RNPs in Trypanosoma brucei reveals a rich repertoire of non-coding RNAs
Q42772636	RNA-seq analysis of sulfur-deprived Chlamydomonas cells reveals aspects of acclimation critical for cell survival
Q36575871	RNA-seq analysis of synovial fibroblasts brings new insights into rheumatoid arthritis
Q91727587	RNA-seq analysis of testes from flurochloridone-treated rats
Q42257010	RNA-seq analysis of the C. briggsae transcriptome
Q35948194	RNA-seq analysis of the Rhizobium tropici CIAT 899 transcriptome shows similarities in the activation patterns of symbiotic genes in the presence of apigenin and salt
Q35326720	RNA-seq analysis of the effect of kanamycin and the ABC transporter AtWBC19 on Arabidopsis thaliana seedlings reveals changes in metal content
Q33569578	RNA-seq analysis of the functional compartments within the rat placentation site
Q35904402	RNA-seq analysis of the gonadal transcriptome during Alligator mississippiensis temperature-dependent sex determination and differentiation.
Q46297152	RNA-seq analysis of the head-kidney transcriptome response to handling-stress in the red cusk-eel (Genypterus chilensis).
Q112711105	RNA-seq analysis of the human surfactant air-liquid interface culture reveals alveolar type II cell-like transcriptome
Q37291322	RNA-seq analysis of the hypothalamic transcriptome reveals the networks regulating physiopathological progress in the diabetic GK rat.
Q35183286	RNA-seq analysis of the influence of anaerobiosis and FNR on Shigella flexneri
Q97641167	RNA-seq analysis of the key long noncoding RNAs and mRNAs related to cognitive impairment after cardiac arrest and cardiopulmonary resuscitation
Q41717850	RNA-seq analysis of the kidneys of broiler chickens fed diets containing different concentrations of calcium.
Q34734567	RNA-seq analysis of the rat placentation site reveals maternal obesity-associated changes in placental and offspring thyroid hormone signaling
Q91166651	RNA-seq analysis of the response of plant-pathogenic oomycete Phytophthora parasitica to the fungicide dimethomorph
Q35565911	RNA-seq analysis of the response of the halophyte, Mesembryanthemum crystallinum (ice plant) to high salinity
Q64077092	RNA-seq analysis of the salivary glands and midgut of the Argasid tick Ornithodoros rostratus
Q39404001	RNA-seq analysis of the transcriptional response to blue and red light in the extremophilic red alga, Cyanidioschyzon merolae.
Q50134474	RNA-seq analysis of the transcriptome of the liver of cynomolgus monkeys with type 2 diabetes.
Q38838114	RNA-seq analysis of the whole transcriptome of MDA-MB-231 mammary carcinoma cells exposed to the antimetastatic drug NAMI-A.
Q35106310	RNA-seq analysis of transcriptome and glucosinolate metabolism in seeds and sprouts of broccoli (Brassica oleracea var. italic)
Q34593517	RNA-seq analysis of transcriptomes in thrombin-treated and control human pulmonary microvascular endothelial cells
Q36027507	RNA-seq analysis of virR and revR mutants of Clostridium perfringens.
Q91897254	RNA-seq analysis of viral gene expression in the skin of Marek's disease virus infected chickens
Q42777805	RNA-seq analysis provide new insights into mapk signaling of apolipoproteinciii-induced inflammation in porcine vascular endothelial cells.
Q91308993	RNA-seq analysis provides insight into molecular adaptations of Andrias davidianus
Q47629167	RNA-seq analysis provides insight into reprogramming of culm development in Zizania latifolia induced by Ustilago esculenta.
Q91148985	RNA-seq analysis provides insights into cold stress responses of Xanthomonas citri pv. citri
Q36115469	RNA-seq analysis revealed ROS-mediated related genes involved in cadmium detoxification in the razor clam Sinonovacula constricta
Q35103091	RNA-seq analysis revealed novel genes and signaling pathway associated with disease resistance to avian influenza virus infection in chickens
Q94461672	RNA-seq analysis reveals TRPC genes to impact an unexpected number of metabolic and regulatory pathways
Q47704101	RNA-seq analysis reveals alternative splicing under salt stress in cotton, Gossypium davidsonii
Q58576123	RNA-seq analysis reveals considerable genetic diversity and provides genetic markers saturating all chromosomes in the diploid wild wheat relative Aegilops umbellulata
Q52880308	RNA-seq analysis reveals differences in transcript abundance between cultured and sand fly-derived Leishmania infantum promastigotes.
Q28728251	RNA-seq analysis reveals different dynamics of differentiation of human dermis- and adipose-derived stromal stem cells
Q57777909	RNA-seq analysis reveals different gene ontologies and pathways in rheumatoid arthritis and Kashin-Beck disease
Q96233064	RNA-seq analysis reveals divergent adaptive response to hyper- and hypo-salinity in cobia, Rachycentron canadum
Q30641144	RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species
Q35651998	RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean
Q35922929	RNA-seq analysis reveals new candidate genes for drip loss in a Pietrain × Duroc × Landrace × Yorkshire population
Q91344267	RNA-seq analysis reveals resistome genes and signalling pathway associated with vancomycin-intermediate Staphylococcus aureus
Q34786493	RNA-seq analysis reveals significant effects of EGFR signalling on the secretome of mesenchymal stem cells.
Q35060010	RNA-seq analysis reveals significant transcriptome changes in turbot (Scophthalmus maximus) suffering severe enteromyxosis
Q30468362	RNA-seq analysis reveals that an ECF σ factor, AcsS, regulates achromobactin biosynthesis in Pseudomonas syringae pv. syringae B728a
Q112649865	RNA-seq analysis reveals the genes/pathways responsible for genetic plasticity of rice to varying environmental conditions on direct-sowing and transplanting
Q35146889	RNA-seq analysis reveals the role of red light in resistance against Pseudomonas syringae pv. tomato DC3000 in tomato plants
Q90022884	RNA-seq analysis reveals the significant effects of different light conditions on oil degradation by marine Chlorella vulgaris
Q33831074	RNA-seq analysis to identify novel roles of scleraxis during embryonic mouse heart valve remodeling
Q92282494	RNA-seq and ChIP-seq as Complementary Approaches for Comprehension of Plant Transcriptional Regulatory Mechanism
Q112277423	RNA-seq and Network Analysis Reveal Unique Chemokine Activity Signatures in the Synovial Tissue of Patients With Rheumatoid Arthritis
Q45721922	RNA-seq and Tn-seq reveal fitness determinants of vancomycin-resistant Enterococcus faecium during growth in human serum
Q64925719	RNA-seq and flow-cytometry of conventional, scalp, and palmoplantar psoriasis reveal shared and distinct molecular pathways.
Q34895191	RNA-seq and high-definition mass spectrometry reveal the complex and divergent venoms of two rear-fanged colubrid snakes
Q112279972	RNA-seq and integrated network analysis reveals the hub genes and key pathway of paclitaxel inhibition on Adriamycin resistant diffuse large B cell lymphoma cells
Q36283290	RNA-seq and metabolomic analyses of Akt1-mediated muscle growth reveals regulation of regenerative pathways and changes in the muscle secretome
Q92209728	RNA-seq and microRNA-seq analysis of Japanese flounder (Paralichthys olivaceus) larvae treated by thyroid hormones
Q34478275	RNA-seq and microarray complement each other in transcriptome profiling.
Q94545215	RNA-seq and network analysis reveal unique glial gene expression signatures during prion infection
Q112709782	RNA-seq and phytohormone analysis reveals the culm color variation of Bambusa oldhamii Munro
Q33657198	RNA-seq approach to analysis of gene expression profiles in dark green islands and light green tissues of Cucumber mosaic virus-infected Nicotiana tabacum
Q40234075	RNA-seq approaches for determining mRNA abundance in Leishmania
Q27025637	RNA-seq as a powerful tool for penaeid shrimp genetic progress
Q90240030	RNA-seq as a tool for evaluating human embryo competence
Q38598625	RNA-seq assembly and analysis of Garcinia mangostana transcriptome during seed germination
Q62495329	RNA-seq assistant: machine learning based methods to identify more transcriptional regulated genes
Q33712729	RNA-seq based SNPs for mapping in Brassica juncea (AABB): synteny analysis between the two constituent genomes A (from B. rapa) and B (from B. nigra) shows highly divergent gene block arrangement and unique block fragmentation patterns
Q34803464	RNA-seq based SNPs in some agronomically important oleiferous lines of Brassica rapa and their use for genome-wide linkage mapping and specific-region fine mapping
Q37640198	RNA-seq based detection of differentially expressed genes in the skeletal muscle of Duroc pigs with distinct lipid profiles.
Q41816007	RNA-seq based gene expression analysis of ovarian granulosa cells exposed to zearalenone in vitro: significance to steroidogenesis
Q36588399	RNA-seq based identification and mutant validation of gene targets related to ethanol resistance in cyanobacterial Synechocystis sp. PCC 6803.
Q38468582	RNA-seq based on transcriptome reveals differ genetic expressing in Chlamys farreri exposed to carcinogen PAHs
Q97079124	RNA-seq based profiling of extracellular vesicles in plasma reveals a potential role of miR-122-5p in asthma
Q64254547	RNA-seq based transcriptional analysis of Saccharomyces cerevisiae and Lachancea thermotolerans in mixed-culture fermentations under anaerobic conditions
Q52312520	RNA-seq based transcriptional analysis reveals dynamic genes expression profiles and immune-associated regulation under heat stress in Apostichopus japonicus.
Q28732678	RNA-seq based transcriptional map of bovine respiratory disease pathogen "Histophilus somni 2336"
Q89600278	RNA-seq based transcriptome analysis of EHMT2 functions in breast cancer
Q112650481	RNA-seq based transcriptome analysis of ethanol extract of saffron protective effect against corticosterone-induced PC12 cell injury
Q35088268	RNA-seq based transcriptome analysis of hepatitis E virus (HEV) and hepatitis B virus (HBV) replicon transfected Huh-7 cells
Q89196051	RNA-seq based transcriptome analysis of the protective effect of compound longmaining decoction on acute myocardial infarction
Q38429415	RNA-seq based transcriptomic analysis of CPPU treated grape berries and emission of volatile compounds
Q42777399	RNA-seq based transcriptomic analysis of single bacterial cells
Q37397397	RNA-seq based transcriptomic analysis uncovers α-linolenic acid and jasmonic acid biosynthesis pathways respond to cold acclimation in Camellia japonica
Q36194368	RNA-seq based transcriptomic map reveals new insights into mouse salivary gland development and maturation.
Q38462687	RNA-seq based whole transcriptome analysis of the cyclopoid copepod Paracyclopina nana focusing on xenobiotics metabolism
Q28535228	RNA-seq characterization of spinal cord injury transcriptome in acute/subacute phases: a resource for understanding the pathology at the systems level
Q40042867	RNA-seq comparative analysis of Peking ducks spleen gene expression 24 h post-infected with duck plague virulent or attenuated virus
Q57912674	RNA-seq coupled to proteomic analysis reveals high sperm proteome variation between two closely related marine mussel species
Q112568884	RNA-seq coupling two different methods of castration reveals new insights into androgen deficiency-caused degeneration of submaxillary gland in male Sprague Dawley rats
Q30668800	RNA-seq data analysis at the gene and CDS levels provides a comprehensive view of transcriptome responses induced by 4-hydroxynonenal
Q91641929	RNA-seq data analysis of stimulated hepatocellular carcinoma cells treated with epigallocatechin gallate and fisetin reveals target genes and action mechanisms
Q58585946	RNA-seq data and surprisal analysis of mutant and control strain of the green microalga during day/night cycles
Q38372002	RNA-seq data comparisons of wild soybean genotypes in response to soybean cyst nematode (Heterodera glycines).
Q93137169	RNA-seq data for olive flounder (Paralichthys olivaceus) according to water temperature
Q97541679	RNA-seq data from C-X-C chemokine receptor type 5 (CXCR5) gene knockout aged mice with retinal degeneration phenotype
Q38650289	RNA-seq data from different developmental stages of Rafflesia cantleyi floral buds.
Q57912671	RNA-seq data from mature male gonads of marine mussels Mytilus edulis and M. galloprovincialis
Q91844511	RNA-seq data from whole rice grains of pigmented and non-pigmented Malaysian rice varieties
Q92900369	RNA-seq data in pain research-an illustrated guide
Q90259327	RNA-seq data of Ganoderma boninense at axenic culture condition and under in planta pathogen-oil palm (Elaeis guineensis Jacq.) interaction
Q38631245	RNA-seq data of Oryza sativa cultivar Kuku Belang under PEG treatment
Q92223092	RNA-seq data of banana bunchy top virus (BBTV) viruliferous and non-viruliferous banana aphid (Pentalonia nigronervosa)
Q54957568	RNA-seq data of control and powdery mildew pathogen (Golovinomyces orontii) treated transcriptomes of Helianthus niveus.
Q55164482	RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer.
Q90748368	RNA-seq data of soleus muscle tissue after spinal cord injury under conditions of inactivity and applied exercise
Q58604511	RNA-seq data of the L. shoot system
Q64270712	RNA-seq data reveals a coordinated regulation mechanism of multigenes involved in the high accumulation of palmitoleic acid and oil in sea buckthorn berry pulp
Q36275155	RNA-seq de novo Assembly Reveals Differential Gene Expression in Glossina palpalis gambiensis Infected with Trypanosoma brucei gambiense vs. Non-Infected and Self-Cured Flies
Q43868187	RNA-seq dependent transcriptional analysis unveils gene expression profile in the intestine of sea cucumber Apostichopus japonicus during aestivation
Q33726183	RNA-seq detects pharmacological inhibition of Epstein-Barr virus late transcription during spontaneous reactivation
Q37523925	RNA-seq differential expression studies: more sequence or more replication?
Q33983626	RNA-seq discovery, functional characterization, and comparison of sesquiterpene synthases from Solanum lycopersicum and Solanum habrochaites trichomes
Q47724575	RNA-seq expression profiling of rat MCAO model following reperfusion Orexin-A.
Q37653946	RNA-seq for comparative transcript profiling of kenaf under salinity stress
Q35735894	RNA-seq for gene identification and transcript profiling in relation to root growth of bermudagrass (Cynodon dactylon) under salinity stress
Q57798069	RNA-seq for identification of therapeutically targetable determinants of immune activation in human glioblastoma
Q92128458	RNA-seq from archival FFPE breast cancer samples: molecular pathway fidelity and novel discovery
Q58793532	RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants
Q33953038	RNA-seq identified a super-long intergenic transcript functioning in adipogenesis
Q48353667	RNA-seq identifies a diminished differentiation gene signature in primary monolayer keratinocytes grown from lesional and uninvolved psoriatic skin.
Q35645868	RNA-seq identifies a role for the PPARβ/δ inverse agonist GSK0660 in the regulation of TNFα-induced cytokine signaling in retinal endothelial cells
Q103758146	RNA-seq identifies circulating miRNAs as potential biomarkers for plaque rupture in patients with ST-segment elevation myocardial infarction
Q27852644	RNA-seq identifies clinically relevant fusion genes in leukemia including a novel MEF2D/CSF1R fusion responsive to imatinib
Q34028959	RNA-seq identifies determinants of oxaliplatin sensitivity in colorectal cancer cell lines
Q47281260	RNA-seq identifies integrin alpha of kuruma shrimp Marsupenaeus japonicus as a candidate molecular marker for phagocytic hemocytes
Q38432436	RNA-seq implicates deregulation of the immune system in the pathogenesis of diverticulitis
Q42777215	RNA-seq in Pulmonary Medicine: How Much Is Enough?
Q92060715	RNA-seq in Skeletal Biology
Q35907667	RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.).
Q39126908	RNA-seq in kinetoplastids: A powerful tool for the understanding of the biology and host-pathogen interactions
Q34781501	RNA-seq in the tetraploid Xenopus laevis enables genome-wide insight in a classic developmental biology model organism
Q57748731	RNA-seq is a valuable complement of conventional diagnostic tools in newly diagnosed AML patients
Q34340482	RNA-seq liver transcriptome analysis reveals an activated MHC-I pathway and an inhibited MHC-II pathway at the early stage of vaccine immunization in zebrafish
Q42774777	RNA-seq methods for identifying differentially expressed gene in human pancreatic islet cells treated with pro-inflammatory cytokines
Q33558353	RNA-seq mixology: designing realistic control experiments to compare protocols and analysis methods
Q34439333	RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas.
Q42773717	RNA-seq of Arabidopsis pollen uncovers novel transcription and alternative splicing
Q61442948	RNA-seq of HaHV-1-infected abalones reveals a common transcriptional signature of Malacoherpesviruses
Q64118326	RNA-seq of Isolated Chromaffin Cells Highlights the Role of Sex-Linked and Imprinted Genes in Adrenal Medulla Development
Q36948696	RNA-seq of Ranunculus sceleratus and Identification of Orthologous Genes among Four Ranunculus Species
Q41384506	RNA-seq of Rice Yellow Stem Borer Scirpophaga incertulas Reveals Molecular Insights During Four Larval Developmental Stages
Q110698978	RNA-seq of buffalo fibroblasts over-expressed pluripotent-related genes to investigate characteristics of its preliminarily reprogrammed stage
Q92364123	RNA-seq of circular RNAs identified circPTPN22 as a potential new activity indicator in systemic lupus erythematosus
Q92908676	RNA-seq of eight different poplar clones reveals conserved up-regulation of gene expression in response to insect herbivory
Q36690973	RNA-seq of human reference RNA samples using a thermostable group II intron reverse transcriptase.
Q36287801	RNA-seq of life stages of the oomycete Phytophthora infestans reveals dynamic changes in metabolic, signal transduction, and pathogenesis genes and a major role for calcium signaling in development
Q57050122	RNA-seq of macrophages of amoeboid or mesenchymal migratory phenotype due to specific structure of environment
Q58544669	RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism
Q91287921	RNA-seq of newly diagnosed patients in the PADIMAC study leads to a bortezomib/lenalidomide decision signature
Q112650192	RNA-seq of nine canine prostate cancer cell lines reveals diverse therapeutic target signatures
Q47094474	RNA-seq of serial kidney biopsies obtained during progression of chronic kidney disease from dogs with X-linked hereditary nephropathy.
Q60053956	RNA-seq of spinal cord from nerve-injured rats after spinal cord stimulation
Q42150736	RNA-seq of the aging brain in the short-lived fish N. furzeri - conserved pathways and novel genes associated with neurogenesis
Q40740875	RNA-seq permits a closer look at normal skin and psoriasis gene networks
Q36436903	RNA-seq pinpoints a Xanthomonas TAL-effector activated resistance gene in a large-crop genome
Q38476638	RNA-seq profiles from grass carp tissues after reovirus (GCRV) infection based on singular and modular enrichment analyses
Q92541335	RNA-seq profiles of chicken type II pneumocyte in response to Escherichia coli infection
Q35054098	RNA-seq profiles of immune related genes in the staghorn coral Acropora cervicornis infected with white band disease
Q92811002	RNA-seq profiles of putative genes involved in specific immune priming in Bombyx mori haemocytes
Q92880616	RNA-seq profiling of Fugacium kawagutii reveals strong responses in metabolic processes and symbiosis potential to deficiencies of iron and other trace metals
Q34517369	RNA-seq profiling of a radiation resistant and radiation sensitive prostate cancer cell line highlights opposing regulation of DNA repair and targets for radiosensitization.
Q99586849	RNA-seq profiling of microdissected glomeruli identifies potential biomarkers for human IgA nephropathy
Q91946315	RNA-seq profiling of skin in temperate and tropical cattle
Q35557833	RNA-seq profiling of small numbers of Drosophila neurons
Q112637801	RNA-seq profiling of tubulointerstitial tissue reveals a potential therapeutic role of dual anti-phosphatase 1 in glomerulonephritis
Q112290134	RNA-seq profiling reveals PBMC RNA as a potential biomarker for hepatocellular carcinoma
Q64887157	RNA-seq profiling reveals differentially expressed genes as potential markers for vital reaction in skin contusion: a pilot study.
Q91968635	RNA-seq profiling, and impaired autophagic process in skeletal muscle of MELAS
Q92361734	RNA-seq reveal role of bovine TORC2 in the regulation of adipogenesis
Q90484945	RNA-seq revealed the signatures of immunity and metabolism in the Litopenaeus vannamei intestine in response to dietary succinate
Q35954612	RNA-seq reveals a diminished acclimation response to the combined effects of ocean acidification and elevated seawater temperature in Pagothenia borchgrevinki
Q34648112	RNA-seq reveals activation of both common and cytokine-specific pathways following neutrophil priming
Q96685853	RNA-seq reveals altered gene expression levels in proximal tubular cell cultures compared to renal cortex but not during early glucotoxicity
Q36169696	RNA-seq reveals aurora kinase-driven mTOR pathway activation in patients with sarcomatoid metastatic renal cell carcinoma.
Q38755649	RNA-seq reveals conservation of function among the yolk sacs of human, mouse, and chicken
Q35135838	RNA-seq reveals cooperative metabolic interactions between two termite-gut spirochete species in co-culture
Q41138517	RNA-seq reveals determinants for irinotecan sensitivity/resistance in colorectal cancer cell lines
Q33582964	RNA-seq reveals determinants of sensitivity to chemotherapy drugs in esophageal carcinoma cells
Q38815652	RNA-seq reveals differential gene expression in the brains of juvenile resident and migratory smolt rainbow trout (Oncorhynchus mykiss).
Q64993414	RNA-seq reveals differentially expressed genes in rice (Oryza sativa) roots during interactions with plant-growth promoting bacteria, Azospirillum brasilense.
Q35843919	RNA-seq reveals differentially expressed genes of rice (Oryza sativa) spikelet in response to temperature interacting with nitrogen at meiosis stage
Q92623054	RNA-seq reveals disruption of gene regulation when honey bees are caged and deprived of hive conditions
Q45664343	RNA-seq reveals distinctive RNA profiles of small extracellular vesicles from different human liver cancer cell lines
Q90818294	RNA-seq reveals diverse effects of substrate stiffness on mesenchymal stem cells
Q96127229	RNA-seq reveals downregulated osteochondral genes potentially related to tibia bacterial chondronecrosis with osteomyelitis in broilers
Q112276769	RNA-seq reveals insights into molecular mechanisms of metabolic restoration via tryptophan supplementation in low birth weight piglet model
Q38602807	RNA-seq reveals more consistent reference genes for gene expression studies in human non-melanoma skin cancers
Q91950770	RNA-seq reveals novel CircRNAs involved in breast cancer progression and patient therapy response
Q101328714	RNA-seq reveals novel cancer-selective and disease subtype-independent mechanistic targets of withaferin A in human breast cancer cells
Q89458905	RNA-seq reveals novel mechanistic targets of withaferin A in prostate cancer cellss
Q34168176	RNA-seq reveals novel transcriptome of genes and their isoforms in human pulmonary microvascular endothelial cells treated with thrombin
Q92161612	RNA-seq reveals outcome-specific gene expression of MMP7 and PCK1 in biliary atresia
Q36443304	RNA-seq reveals post-transcriptional regulation of Drosophila insulin-like peptide dilp8 and the neuropeptide-like precursor Nplp2 by the exoribonuclease Pacman/XRN1.
Q46176910	RNA-seq reveals regional differences in transcriptome response to heat stress in the marine snail Chlorostoma funebralis
Q97650331	RNA-seq reveals sub-zones in mouse adrenal zona fasciculata and the sexually dimorphic responses to thyroid hormone
Q92302688	RNA-seq reveals temporal differences in the transcriptome response to acute heat stress in the Atlantic salmon (Salmo salar)
Q33715562	RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux in Serratia sp. ATCC 39006.
Q90455559	RNA-seq reveals the circular RNA and miRNA expression profile of peripheral blood mononuclear cells in patients with rheumatoid arthritis
Q38806002	RNA-seq reveals the critical role of CspA in regulating Brucella melitensis metabolism and virulence
Q91856304	RNA-seq reveals the critical role of Lon protease in stress response and Brucella virulence
Q35973991	RNA-seq reveals the critical role of OtpR in regulating Brucella melitensis metabolism and virulence under acidic stress
Q100941711	RNA-seq reveals the diverse effects of substrate stiffness on epidermal ovarian cancer cells
Q38477722	RNA-seq reveals the downregulated proteins related to photosynthesis in growth-inhibited rice seedlings induced by low-energy N+ beam implantation
Q64115761	RNA-seq reveals the involvement of key genes for aerobic adaptation in rice
Q34402038	RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus
Q101241258	RNA-seq reveals tight junction-relevant erythropoietic fate induced by OCT4 in human hair follicle mesenchymal stem cells
Q46243879	RNA-seq reveals transcriptome changes in goats following myostatin gene knockout.
Q90625204	RNA-seq reveals transcriptome changes of the embryonic lens cells in Prox1 tissue specific knockout mice
Q46934956	RNA-seq reveals transcriptomic shock involving transposable elements reactivation in hybrids of young lake whitefish species
Q85277415	RNA-seq studies reveal new insights into p63 and the transcriptomic landscape of the mouse skin
Q36058271	RNA-seq studies using wheat PHYTOCHROME B and PHYTOCHROME C mutants reveal shared and specific functions in the regulation of flowering and shade-avoidance pathways
Q42772742	RNA-seq transcriptional profiling of Herbaspirillum seropedicae colonizing wheat (Triticum aestivum) roots.
Q42778313	RNA-seq transcriptional profiling of Leishmania amazonensis reveals an arginase-dependent gene expression regulation.
Q101218218	RNA-seq transcriptome analysis in flounder cells to compare innate immune responses to low- and high-virulence viral hemorrhagic septicemia virus
Q37176879	RNA-seq transcriptome analysis of a Pseudomonas strain with diversified catalytic properties growth under different culture medium
Q49475580	RNA-seq transcriptome analysis of breast cancer cell lines under shikonin treatment.
Q38455555	RNA-seq transcriptome analysis of extensor digitorum longus and soleus muscles in large white pigs
Q46274097	RNA-seq transcriptome analysis of formalin fixed, paraffin-embedded canine meningioma.
Q28710501	RNA-seq transcriptome analysis of male and female zebra finch cell lines
Q48141847	RNA-seq transcriptome analysis of the immature seeds of two Brassica napus lines with extremely different thousand-seed weight to identify the candidate genes related to seed weight.
Q97566540	RNA-seq transcriptome analysis reveals LTR-retrotransposons modulation in Human Peripheral Blood Mononuclear Cells (PBMCs) after in vivo Lipopolysaccharides (LPS) injection
Q35618041	RNA-seq transcriptome profiling of equine inner cell mass and trophectoderm
Q90963607	RNA-seq transcriptome profiling of porcine lung from two pig breeds in response to Mycoplasma hyopneumoniae infection
Q34370992	RNA-seq transcriptome profiling reveals that Medicago truncatula nodules acclimate N₂ fixation before emerging P deficiency reaches the nodules
Q49297776	RNA-seq transcriptomic analysis of adult zebrafish inner ear hair cells.
Q92642109	RNA-seq transcriptomic analysis of green tea polyphenols regulation of differently expressed genes in Saccharomyces cerevisiae under ethanol stress
Q59137915	RNA-seq transcriptomic profiling of crassulacean acid metabolism pathway in Dendrobium catenatum
Q100417761	RNA-seq with RNase H-based ribosomal RNA depletion specifically designed for C. elegans
Q92127886	RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics
Q39013581	RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements
Q36336044	RNA-seq-based analysis of drug-resistant Salmonella enterica serovar Typhimurium selected in vivo and in vitro
Q58797782	RNA-seq-based analysis of the hypertrophic scarring with and without pressure therapy in a Bama minipig model
Q39346536	RNA-seq-based comparative transcriptome analysis of the syngas-utilizing bacterium Clostridium ljungdahlii DSM 13528 grown autotrophically and heterotrophically
Q37466103	RNA-seq-based digital gene expression analysis reveals modification of host defense responses by rice stripe virus during disease symptom development in Arabidopsis
Q36102385	RNA-seq-based evaluation of bicolor tepal pigmentation in Asiatic hybrid lilies (Lilium spp.).
Q46249558	RNA-seq-based genome annotation and identification of long-noncoding RNAs in the grapevine cultivar 'Riesling'.
Q90030180	RNA-seq-based identification of Star upregulation by islet amyloid formation
Q36732466	RNA-seq-based mapping and candidate identification of mutations from forward genetic screens
Q27324834	RNA-seq-based metatranscriptomic and microscopic investigation reveals novel metalloproteases of Neobodo sp. as potential virulence factors for soft tunic syndrome in Halocynthia roretzi
Q57174132	RNA-seq-based monitoring of gene expression changes of viable but non-culturable state of Vibrio cholerae induced by cold seawater
Q90350555	RNA-seq-based quanitative transcriptome analysis of meat color and taste from chickens administered by eucalyptus leaf polyphenols extract
Q92286724	RNA-seq-based selection of reference genes for RT-qPCR analysis of pitaya
Q42776906	RNA-seq-based transcriptome profiling reveals differential gene expression in the lungs of Sprague-Dawley rats during early-phase acute hypobaric hypoxia
Q34008110	RNA-seq-mediated transcriptome analysis of actively growing and winter dormant shoots identifies non-deciduous habit of evergreen tree tea during winters
Q91480456	RNA-seq: Basic Bioinformatics Analysis
Q98162015	RNA-seq: The early response of the snail Physella acuta to the digenetic trematode Echinostoma paraensei
Q24655562	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
Q33604404	RNA-seq: from technology to biology
Q33808041	RNA-seq: impact of RNA degradation on transcript quantification
Q33924548	RNA-seq: technical variability and sampling.
Q90587983	RNAIndel: discovering somatic coding indels from tumor RNA-Seq data
Q96641922	RNAIndel: discovering somatic coding indels from tumor RNA-Seq data
Q35860638	RNASEQR--a streamlined and accurate RNA-seq sequence analysis program
Q30817510	RNASeqGUI: a GUI for analysing RNA-Seq data
Q36408926	RNASeqMetaDB: a database and web server for navigating metadata of publicly available mouse RNA-Seq datasets
Q91653811	RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
Q40828602	RNASequel: accurate and repeat tolerant realignment of RNA-seq reads
Q35167784	RNAbrowse: RNA-Seq de novo assembly results browser
Q112611776	RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis
Q104476905	RNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow
Q90928770	RNAmut: robust identification of somatic mutations in acute myeloid leukemia using RNA-seq
Q35038282	RNAseqViewer: visualization tool for RNA-Seq data
Q57788029	RNAsik: A Pipeline for complete and reproducible RNA-seq analysis that runs anywhere with speed and ease
Q113926331	RNA‐seq‐driven expression analysis to investigate cardiovascular disease genes with associated phenotypes among atrial fibrillation patients
Q92628483	RNA‑seq analyses of antibiotic resistance mechanisms in Serratia marcescens
Q35161510	RNA‑seq analysis of synovial fibroblasts in human rheumatoid arthritis
Q38440307	RNA‑seq profiling of mRNA associated with hypertrophic cardiomyopathy
Q34798302	RNaseIII and T4 polynucleotide Kinase sequence biases and solutions during RNA-seq library construction
Q47826127	RNentropy: an entropy-based tool for the detection of significant variation of gene expression across multiple RNA-Seq experiments.
Q112649930	RNfuzzyApp: an R shiny RNA-seq data analysis app for visualisation, differential expression analysis, time-series clustering and enrichment analysis [version 2; peer review: 3 approved]
Q41491896	ROTS: reproducible RNA-seq biomarker detector-prognostic markers for clear cell renal cell cancer
Q29547458	RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Q56894370	RSEQREP: RNA-Seq Reports, an open-source cloud-enabled framework for reproducible RNA-Seq data processing, analysis, and result reporting
Q33764103	RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries
Q34284787	RSeQC: quality control of RNA-seq experiments
Q34974698	RVboost: RNA-seq variants prioritization using a boosting method
Q91294708	RaNA-Seq: Interactive RNA-Seq analysis from FASTQ files to functional analysis
Q39424417	Rail-RNA: scalable analysis of RNA-seq splicing and coverage
Q90322808	Ranking genome-wide correlation measurements improves microarray and RNA-seq based global and targeted co-expression networks
Q57791529	Ranking noncanonical 5' splice site usage by genome-wide RNA-seq analysis and splicing reporter assays
Q39679917	RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes
Q55646334	Rapid and Efficient Methods for Preparing Globin- and rRNA-Depleted Directional RNA-Seq Libraries.
Q99958990	Rapid development of molecular resources for a freshwater mussel, Villosa lienosa (Bivalvia:Unionidae), using an RNA-seq-based approach
Q91083714	Rapid identification of a candidate nicosulfuron sensitivity gene (Nss) in maize (Zea mays L.) via combining bulked segregant analysis and RNA-seq
Q41861555	Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
Q34443884	Rcount: simple and flexible RNA-Seq read counting.
Q30000331	Re-analysis of RNA-seq transcriptome data reveals new aspects of gene activity in Arabidopsis root hairs
Q89213182	Re: RNA-Seq of Single Prostate CTCs Implicates Noncanonical Wnt Signaling in Antiandrogen Resistance
Q34075847	ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets
Q112729992	Read trimming is not required for mapping and quantification of RNA-seq reads at the gene level
Q31123354	Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data
Q98164077	Reading between the Lines: Utilizing RNA-Seq Data for Global Analysis of sRNAs in Staphylococcus aureus
Q30950123	Recommendations for Accurate Resolution of Gene and Isoform Allele-Specific Expression in RNA-Seq Data.
Q92512847	Reconstruction of insect hormone pathways in an aquatic firefly, Sclerotia aquatilis (Coleoptera: Lampyridae), using RNA-seq
Q40010563	Recovering complete mitochondrial genome sequences from RNA-Seq: A case study of Polytomella non-photosynthetic green algae
Q91244775	Recurrent functional misinterpretation of RNA-seq data caused by sample-specific gene length bias
Q36883277	Recursive Indirect-Paths Modularity (RIP-M) for Detecting Community Structure in RNA-Seq Co-expression Networks.
Q30850313	Reduced biological effect of e-cigarette aerosol compared to cigarette smoke evaluated in vitro using normalized nicotine dose and RNA-seq-based toxicogenomics
Q92933271	Reducing the structure bias of RNA-Seq reveals a large number of non-annotated non-coding RNA
Q35206074	Reference genes for RT-qPCR studies in Corynebacterium pseudotuberculosis identified through analysis of RNA-seq data
Q97641904	Reference genome and transcriptome informed by the sex chromosome complement of the sample increase ability to detect sex differences in gene expression from RNA-Seq data
Q52659858	Refined ab initio gene predictions of Heterorhabditis bacteriophora using RNA-seq.
Q55645537	Refining a steroidogenic model: an analysis of RNA-seq datasets from insect prothoracic glands.
Q96228251	Refining the transcriptome of the human malaria parasite Plasmodium falciparum using amplification-free RNA-seq
Q108588703	Regulation of Oxalate Metabolism in Spinach Revealed by RNA-Seq-Based Transcriptomic Analysis
Q41292363	Regulation of gene expression in roots of the pH-sensitive Vaccinium corymbosum and the pH-tolerant Vaccinium arboreum in response to near neutral pH stress using RNA-Seq
Q104685913	Regulation of growth in peach roots by exogenous hydrogen sulfide based on RNA-Seq
Q36103121	Regulatory complexity revealed by integrated cytological and RNA-seq analyses of meiotic substages in mouse spermatocytes
Q28606845	Relationships within Cladobranchia (Gastropoda: Nudibranchia) based on RNA-Seq data: an initial investigation
Q63648097	Relative Abundance of Transcripts ( ): Identifying differential isoform abundance from RNA-seq
Q38661633	Relative abundance of deformed wing virus, Varroa destructor virus 1, and their recombinants in honey bees (Apis mellifera) assessed by kmer analysis of public RNA-Seq data
Q30670530	Reliable identification of genomic variants from RNA-seq data
Q35861321	Removal of redundant contigs from de novo RNA-Seq assemblies via homology search improves accurate detection of differentially expressed genes
Q33741138	Removing bias against short sequences enables northern blotting to better complement RNA-seq for the study of small RNAs
Q34143874	Removing technical variability in RNA-seq data using conditional quantile normalization
Q36949200	Replicates, Read Numbers, and Other Important Experimental Design Considerations for Microbial RNA-seq Identified Using Bacillus thuringiensis Datasets
Q58568138	Reply to "Evaluation of immune repertoire inference methods from RNA-seq data"
Q92071785	Representation and relative abundance of cell-type selective markers in whole-kidney RNA-Seq data
Q97436040	Repressed Gene Expression of Photosynthetic Antenna Proteins Associated with Yellow Leaf Variation as Revealed by Bulked Segregant RNA-seq in Tea Plant Camellia sinensis
Q47751599	Reproducible RNA-seq analysis using recount2.
Q92530365	Reproducible changes in the gut microbiome suggest a shift in microbial and host metabolism during spaceflight
Q40211917	Reproducible, Scalable Fusion Gene Detection from RNA-Seq
Q112932963	Reproductive physiology of wreckfish (hāpuku) Polyprion oxygeneios in captivity
Q34973400	Reprogramming of Yersinia from virulent to persistent mode revealed by complex in vivo RNA-seq analysis
Q95644942	Research Techniques Made Simple: Whole-Transcriptome Sequencing by RNA-Seq for Diagnosis of Monogenic Disorders
Q34295514	Research resource: RNA-Seq reveals unique features of the pancreatic β-cell transcriptome.
Q33633110	Research resource: small RNA-seq of human granulosa cells reveals miRNAs in FSHR and aromatase genes
Q34466878	Resolving candidate genes of mouse skeletal muscle QTL via RNA-Seq and expression network analyses
Q36282833	Resolving host-pathogen interactions by dual RNA-seq
Q31146473	Resolving interspecific relationships within evolutionarily young lineages using RNA-seq data: An example from Pedicularis section Cyathophora (Orobanchaceae).
Q98206206	Response of Brassica napus to Plasmodiophora brassicae Involves Salicylic Acid-Mediated Immunity: An RNA-Seq-Based Study
Q58791866	Response of cell-wall composition and RNA-seq transcriptome to methyl-jasmonate in Brachypodium distachyon callus
Q85917252	Retraction Note to: Identification of core miRNA based on small RNA-seq and RNA-seq for colorectal cancer by bioinformatics
Q92668868	Retraction Note: Genetic regulation of salt stress tolerance revealed by RNA-Seq in cotton diploid wild species, Gossypium davidsonii
Q91914814	Retraction: Role of oxidative stress in Retinitis pigmentosa: new involved pathways by an RNA-Seq analysis
Q35834082	Revealing Missing Human Protein Isoforms Based on Ab Initio Prediction, RNA-seq and Proteomics
Q35010115	Revealing of Mycobacterium marinum transcriptome by RNA-seq
Q34088536	Revealing the missing expressed genes beyond the human reference genome by RNA-Seq
Q60923480	Revealing transcription factor and histone modification co-localization and dynamics across cell lines by integrating ChIP-seq and RNA-seq data
Q38132350	Revolution of nephrology research by deep sequencing: ChIP-seq and RNA-seq
Q90539635	Rhizophagus intraradices promotes alfalfa (Medicago sativa) defense against pea aphids (Acyrthosiphon pisum) revealed by RNA-Seq analysis
Q44862735	Ribosomal RNA depletion for efficient use of RNA-seq capacity
Q35459265	Riboswitch discovery by combining RNA-seq and genome-wide identification of transcriptional start sites
Q38772342	Rice Expression Database (RED): An integrated RNA-Seq-derived gene expression database for rice
Q33755482	Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads
Q36088542	RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
Q91397449	Robust identification of differentially expressed genes from RNA-seq data
Q96810392	Robust principal component analysis for accurate outlier sample detection in RNA-Seq data
Q112294119	Robustness of differential gene expression analysis of RNA-seq
Q88166807	Role for Wnt Signaling in Retinal Neuropil Development: Analysis via RNA-Seq and In Vivo Somatic CRISPR Mutagenesis
Q98164346	Role of HSP70 in response to (thermo)radiotherapy: analysis of gene expression in canine osteosarcoma cells by RNA-seq
Q111323002	Role of Transportome in the Gills of Chinese Mitten Crabs in Response to Salinity Change: A Meta-Analysis of RNA-Seq Datasets
Q90658750	Role of oxidative stress in Retinitis pigmentosa: new involved pathways by an RNA-Seq analysis
Q42317768	Root Adaptive Responses to Aluminum-Treatment Revealed by RNA-Seq in Two Citrus Species With Different Aluminum-Tolerance
Q61798415	Rootstock-induced molecular responses associated with drought tolerance in sweet orange as revealed by RNA-Seq
Q93606539	Rowley JW, Oler AJ, Tolley ND, et al. Genome-wide RNA-seq analysis of human and mouse platelet transcriptomes. . 2011;118(14):e101-e111
Q33973293	RseqFlow: workflows for RNA-Seq data analysis
Q36891229	Ruguo key genes and tumor driving factors identification of bladder cancer based on the RNA-seq profile
Q42775550	Rule-based integration of RNA-Seq analyses tools for identification of novel transcripts
Q31037902	S-MART, a software toolbox to aid RNA-Seq data analysis
Q31106793	SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data
Q33656516	SAW: a method to identify splicing events from RNA-Seq data based on splicing fingerprints
Q90402825	SEQing: web-based visualization of iCLIP and RNA-seq data in an interactive python framework
Q34433022	SERE: single-parameter quality control and sample comparison for RNA-Seq
Q90093961	SERPINA1 gene identified in RNA-Seq showed strong association with milk protein concentration in Chinese Holstein cows
Q94101868	SERPINE1 IDENTIFIED AS POTENTIAL THERAPEUTIC TARGET THROUGH RNA-SEQ OF CLINICALLY RELEVANT INVASIVE GLIOBLASTOMA CELLS ISOLATED FROM PATIENTS BY 5-ALA BASED METHODOLOGY
Q47268699	SFMetaDB: a comprehensive annotation of mouse RNA splicing factor RNA-Seq datasets
Q90237766	SL-quant: a fast and flexible pipeline to quantify spliced leader trans-splicing events from RNA-seq data
Q112614173	SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data
Q99564888	SMRT- and Illumina-based RNA-seq analyses unveil the ginsinoside biosynthesis and transcriptomic complexity in Panax notoginseng
Q47146103	SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis.
Q31117543	SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence
Q30664273	SNP development from RNA-seq data in a nonmodel fish: how many individuals are needed for accurate allele frequency prediction?
Q34407327	SNP discovery in the bovine milk transcriptome using RNA-Seq technology
Q30684791	SNiPloid: A Utility to Exploit High-Throughput SNP Data Derived from RNA-Seq in Allopolyploid Species.
Q34404689	SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.
Q30588697	SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data
Q47840910	SOAPfusion: a robust and effective computational fusion discovery tool for RNA-seq reads
Q34149919	SOAPsplice: Genome-Wide ab initio Detection of Splice Junctions from RNA-Seq Data
Q55497785	SPAR: small RNA-seq portal for analysis of sequencing experiments.
Q35915015	SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis
Q112612970	SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses
Q31135872	SPIRE, a modular pipeline for eQTL analysis of RNA-Seq data, reveals a regulatory hotspot controlling miRNA expression in C. elegans
Q52591400	SQUID: transcriptomic structural variation detection from RNA-seq.
Q51147899	SSP: an interval integer linear programming for de novo transcriptome assembly and isoform discovery of RNA-seq reads.
Q29615052	STAR: ultrafast universal RNA-seq aligner
Q90681774	STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow
Q42679389	STRA6 as a possible candidate gene for pathogenesis of osteoporosis from RNA‑seq analysis of human mesenchymal stem cells
Q94429684	SUN-033 RNA-Seq Analysis of Ovariectomy-Induced Changes in Mouse Liver Reveals New Targets for Menopause-Associated Metabolic Derangement
Q96346537	SURF: integrative analysis of a compendium of RNA-seq and CLIP-seq datasets highlights complex governing of alternative transcriptional regulation by RNA-binding proteins
Q33829375	Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms
Q38635901	Salt tolerance response revealed by RNA-Seq in a diploid halophytic wild relative of sweet potato
Q30710188	Sample size calculation based on exact test for assessing differential expression analysis in RNA-seq data
Q31143436	Sample size calculation based on generalized linear models for differential expression analysis in RNA-seq data
Q30671087	Sample size calculation for differential expression analysis of RNA-seq data under Poisson distribution
Q91154025	Sample size calculations for the differential expression analysis of RNA-seq data using a negative binomial regression model
Q22065770	Scaffolding a Caenorhabditis nematode genome with RNA-seq
Q92465049	ScanNeo: identifying indel-derived neoantigens using RNA-Seq data
Q64244976	Scanning RNA-Seq and RAD-Seq approach to develop SNP markers closely linked to () in D. Don
Q35882407	Schistosoma mansoni Egg, Adult Male and Female Comparative Gene Expression Analysis and Identification of Novel Genes by RNA-Seq
Q42177160	Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression
Q30831092	Screening and identification of soybean seed-specific genes by using integrated bioinformatics of digital differential display, microarray, and RNA-seq data.
Q33709527	Screening effective differential expression genes for hepatic carcinoma with metastasis in the peripheral blood mononuclear cells by RNA-seq.
Q57134498	Screening for candidate genes related with histological microstructure, meat quality and carcass characteristic in pig based on RNA-seq data
Q49523074	Screening for key genes and transcription factors in ankylosing spondylitis by RNA-Seq.
Q61798522	Screening human cell lines for viral infections applying RNA-Seq data analysis
Q112644510	Screening of Genes Related to Growth, Development and Meat Quality of Sahan Crossbred F1 Sheep Based on RNA-Seq Technology
Q38393223	Screening of genes related to lung cancer caused by smoking with RNA-Seq
Q46706610	ScriptSeq RNA-Seq Library Preparation Method: A Simplified Work-Flow for Directional NGS RNASeq Library Preparation with Whole-Transcript Representation
Q47180556	ScriptSeq V2 Library Preparation Method: A Rapid and Efficient Method for Preparing Directional RNA-Seq Libraries
Q90261529	Searching for best lower dimensional visualization angles for high dimensional RNA-Seq data
Q112718007	Searchlight: automated bulk RNA-seq exploration and visualisation using dynamically generated R scripts
Q40959734	Seasonal differences in the testicular transcriptome profile of free-living European beavers (Castor fiber L.) determined by the RNA-Seq method.
Q38882915	Selecting between-sample RNA-Seq normalization methods from the perspective of their assumptions
Q36856260	Selective amplification and sequencing of cyclic phosphate-containing RNAs by the cP-RNA-seq method
Q33712723	Selective and flexible depletion of problematic sequences from RNA-seq libraries at the cDNA stage.
Q33823403	Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs
Q39043455	Sensitivity, specificity, and reproducibility of RNA-Seq differential expression calls.
Q111150110	SeqAcademy: an educational pipeline for RNA-Seq and ChIP-Seq analysis
Q100437199	SeqAcademy: an educational pipeline for RNA-Seq and anchor-Seq analysis
Q30758424	SeqGSEA: a Bioconductor package for gene set enrichment analysis of RNA-Seq data integrating differential expression and splicing
Q57810101	SeqOthello: querying RNA-seq experiments at scale
Q31162024	Sequence-specific bias correction for RNA-seq data using recurrent neural networks
Q38499057	Sequencing and de novo analysis of the Chinese Sika deer antler-tip transcriptome during the ossification stage using Illumina RNA-Seq technology.
Q36379029	Serotonergic genes in the development of anxiety/depression-like state and pathology of aggressive behavior in male mice: RNA-seq data
Q113164763	Sex-relevant genes in the embryo stage of Chinese soft-shelled turtles as revealed by RNA-Seq analysis
Q99412080	Shark: fishing relevant reads in an RNA-Seq sample
Q97531191	Shiny-DEG: A Web Application to Analyze and Visualize Differentially Expressed Genes in RNA-seq
Q40105344	Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size
Q34044242	SigFuge: single gene clustering of RNA-seq reveals differential isoform usage among cancer samples
Q42127926	SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines
Q31042505	SimFuse: A Novel Fusion Simulator for RNA Sequencing (RNA-Seq) Data
Q112719446	Simple mapping-based quantification of a mock microbial community using total RNA-seq data
Q39110450	Simulation-based comprehensive benchmarking of RNA-seq aligners.
Q58049929	Simultaneous Measurement of Transcriptional and Post-transcriptional Parameters by 3' End RNA-Seq
Q93023907	Simultaneous Profiling of DNA Accessibility and Gene Expression Dynamics with ATAC-Seq and RNA-Seq
Q34472215	Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction
Q42778242	Simultaneous RNA-seq based transcriptional profiling of intracellular Brucella abortus and B. abortus-infected murine macrophages
Q35570028	Simultaneous generation of many RNA-seq libraries in a single reaction
Q42130689	Simultaneous isoform discovery and quantification from RNA-seq
Q34701539	Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly
Q112952254	Single Cell Transcriptome Analysis in Prostate Cancer
Q36126095	Single Nucleotide Polymorphism Discovery in Bovine Pituitary Gland Using RNA-Seq Technology
Q96438265	Single molecule real-time sequencing and RNA-seq unravel the role of long non-coding and circular RNA in the regulatory network during Nile tilapia (Oreochromis niloticus) infection with Streptococcus agalactiae
Q101212124	Single nuclei RNA-seq of mouse placental labyrinth development
Q34680893	Single nucleotide polymorphism discovery in bovine liver using RNA-seq technology
Q35646536	Single nucleotide resolution RNA-seq uncovers new regulatory mechanisms in the opportunistic pathogen Streptococcus agalactiae
Q100392106	Single-Nucleus RNA-Seq Is Not Suitable for Detection of Microglial Activation Genes in Humans
Q112645125	Single-Nucleus RNA-Seq Reveals Dysregulation of Striatal Cell Identity Due to Huntington's Disease Mutations
Q31152278	Single-gene negative binomial regression models for RNA-Seq data with higher-order asymptotic inference
Q34397873	Single-neuron RNA-Seq: technical feasibility and reproducibility
Q92058901	Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling
Q34036328	Single-nucleotide resolution analysis of the transcriptome structure of Clostridium beijerinckii NCIMB 8052 using RNA-Seq
Q113756538	Single-nucleus RNA-Seq reveals singular gene signatures of human ductal cells during adaptation to insulin resistance
Q100512277	Single-nucleus RNA-seq and FISH identify coordinated transcriptional activity in mammalian myofibers
Q89763874	Single-nucleus RNA-seq identifies Huntington disease astrocyte states
Q94512103	Single-nucleus RNA-seq identifies divergent populations of FSHD2 myotube nuclei
Q104459039	Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers
Q37472994	Single-nucleus RNA-seq of differentiating human myoblasts reveals the extent of fate heterogeneity
Q42777480	Single-tubule RNA-Seq uncovers signaling mechanisms that defend against hyponatremia in SIADH.
Q37461155	Small RNA in situ hybridization in Caenorhabditis elegans, combined with RNA-seq, identifies germline-enriched microRNAs
Q64121045	Small RNA-Seq Analysis Reveals miRNA Expression Dynamics Across Tissues in the Malaria Vector,
Q36244969	Small RNA-Seq analysis reveals microRNA-regulation of the Imd pathway during Escherichia coli infection in Drosophila
Q59136648	Small RNA-Seq reveals novel miRNAs shaping the transcriptomic identity of rat brain structures
Q60938628	Small RNA-Seq to Characterize Viruses Responsible of Lettuce Big Vein Disease in Spain
Q36385669	Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor
Q52672146	Small RNA-seq analysis of circulating miRNAs to identify phenotypic variability in Friedreich's ataxia patients.
Q99399914	Small RNA-seq analysis of extracellular vesicles from porcine uterine flushing fluids during peri-implantation
Q58798891	Small RNA-seq analysis of single porcine blastocysts revealed that maternal estradiol-17beta exposure does not affect miRNA isoform (isomiR) expression
Q47946087	Small RNA-seq during acute maximal exercise reveal RNAs involved in vascular inflammation and cardiometabolic health: brief report
Q92726095	Small RNA-seq reveals novel regulatory components for apomixis in Paspalum notatum
Q64244753	Small RNA-seq: The RNA 5'-end adapter ligation problem and how to circumvent it
Q42696616	Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples
Q35198654	SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models
Q100300550	Sodium New Houttuyfonate Inhibits Candida albicans Biofilm Formation by Inhibiting the Ras1-cAMP-Efg1 Pathway Revealed by RNA-seq
Q35011793	Soft truncation thresholding for gene set analysis of RNA-seq data: application to a vaccine study
Q99589529	Sources of variation in cell-type RNA-Seq profiles
Q91353808	Spaceflight/microgravity inhibits the proliferation of hematopoietic stem cells by decreasing Kit-Ras/cAMP-CREB pathway networks as evidenced by RNA-Seq assays
Q92703395	SparkRA: Enabling Big Data Scalability for the GATK RNA-seq Pipeline with Apache Spark
Q34089210	Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation
Q42696647	SparseIso: A novel Bayesian approach to identify alternatively spliced isoforms from RNA-seq data
Q61899593	Species-complex diversification and host-plant associations in Bemisia tabaci: A plant-defence, detoxification perspective revealed by RNA-Seq analyses
Q31045020	SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data
Q64943976	Splice-Break: exploiting an RNA-seq splice junction algorithm to discover mitochondrial DNA deletion breakpoints and analyses of psychiatric disorders.
Q34147120	SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data
Q90905074	SpliceHetero: An information theoretic approach for measuring spliceomic intratumor heterogeneity from bulk tumor RNA-seq
Q31032615	SpliceJumper: a classification-based approach for calling splicing junctions from RNA-seq data
Q30837003	SpliceNet: recovering splicing isoform-specific differential gene networks from RNA-Seq data of normal and diseased samples
Q34347153	SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts
Q90057503	Splicing profile by capture RNA-seq identifies pathogenic germline variants in tumor suppressor genes
Q34601875	SplicingCompass: differential splicing detection using RNA-seq data
Q30900922	SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data
Q60910551	Stability of methods for differential expression analysis of RNA-seq data
Q34586984	Stallion sperm transcriptome comprises functionally coherent coding and regulatory RNAs as revealed by microarray analysis and RNA-seq
Q30795515	Statistical Issues in the Analysis of ChIP-Seq and RNA-Seq Data
Q30708555	Statistical Modeling of RNA-Seq Data.
Q35673409	Statistical detection of differentially expressed genes based on RNA-seq: from biological to phylogenetic replicates
Q31123904	Statistical inference for time course RNA-Seq data using a negative binomial mixed-effect model
Q37153258	Statistical inferences for isoform expression in RNA-Seq
Q36521519	Statistical methods for identifying differentially expressed genes in RNA-Seq experiments
Q34333512	Statistical methods on detecting differentially expressed genes for RNA-seq data
Q31108900	Statistical modeling of isoform splicing dynamics from RNA-seq time series data
Q30982380	Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment
Q35362082	Stormbow: A Cloud-Based Tool for Reads Mapping and Expression Quantification in Large-Scale RNA-Seq Studies
Q35824626	Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea
Q98472361	Strand-Specific RNA-Seq Applied to Malaria Samples
Q36877024	Strand-Specific RNA-Seq Provides Greater Resolution of Transcriptome Profiling.
Q33558324	Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum
Q36159678	Strand-specific RNA-Seq transcriptome analysis of genotypes with and without low-phosphorus tolerance provides novel insights into phosphorus-use efficiency in maize
Q64448650	Strand-specific RNA-seq analysis of the Acidithiobacillus ferrooxidans transcriptome in response to magnesium stress
Q52424559	Strand-specific RNA-seq analysis of the Lactobacillus delbrueckii subsp. bulgaricus transcriptome.
Q34270069	Strand-specific RNA-seq applied to malaria samples
Q64096838	Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava
Q91994679	Strand-specific RNA-seq based identification and functional prediction of lncRNAs in response to melatonin and simulated drought stresses in cassava
Q34399095	Strand-specific RNA-seq reveals ordered patterns of sense and antisense transcription in Bacillus anthracis
Q34519975	Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice
Q42976804	Strand-specific community RNA-seq reveals prevalent and dynamic antisense transcription in human gut microbiota
Q34526940	Strand-specific libraries for high throughput RNA sequencing (RNA-Seq) prepared without poly(A) selection.
Q35110015	Stranded Whole Transcriptome RNA-Seq for All RNA Types
Q94949910	Strandedness during cDNA synthesis, the stranded parameter in htseq-count and analysis of RNA-Seq data
Q30832802	Stratification of gene coexpression patterns and GO function mining for a RNA-Seq data series
Q47135190	Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq
Q34463372	StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Q112286352	Study of Neuronal Apoptosis ceRNA Network in Hippocampal Sclerosis of Human Temporal Lobe Epilepsy by RNA-Seq
Q58592996	Study on differentially expressed genes related to defoliation traits in two alfalfa varieties based on RNA-Seq
Q112721385	Study on the differences of gene expression between pear and apple wild cultivation materials based on RNA-seq technique
Q35058935	Study on the regulatory mechanism of the lipid metabolism pathways during chicken male germ cell differentiation based on RNA-seq
Q47792896	Studying Selenoprotein mRNA Translation Using RNA-Seq and Ribosome Profiling
Q37796158	Studying bacterial transcriptomes using RNA-seq
Q100475572	Style transfer with variational autoencoders is a promising approach to RNA-Seq data harmonization and analysis
Q46238228	Superior rRNA Removal for RNA-Seq Library Preparation
Q33896293	Supersplat--spliced RNA-seq alignment
Q64068546	Surfaceome interrogation using an RNA-seq approach highlights leukemia initiating cell biomarkers in an LMO2 T cell transgenic model
Q33780825	Survey of High Throughput RNA-Seq Data Reveals Potential Roles for lncRNAs during Development and Stress Response in Bread Wheat
Q107540400	Survival Analysis with the Integration of RNA-Seq and Clinical Data to Identify Breast Cancer Subtype Specific Genes
Q31136755	Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis.
Q33982410	Synthetic spike-in standards for RNA-seq experiments
Q38641003	Systematic Selection of Reference Genes for the Normalization of Circulating RNA Transcripts in Pregnant Women Based on RNA-Seq Data
Q95643288	Systematic analysis of 1,298 RNA-Seq samples and construction of a comprehensive soybean (Glycine max) expression atlas
Q64264659	Systematic analysis of TruSeq, SMARTer and SMARTer Ultra-Low RNA-seq kits for standard, low and ultra-low quantity samples
Q34591577	Systematic analysis of palatal transcriptome to identify cleft palate genes within TGFβ3-knockout mice alleles: RNA-Seq analysis of TGFβ3 Mice
Q102054023	Systematic comparison and assessment of RNA-seq procedures for gene expression quantitative analysis
Q44793966	Systematic comparison of RNA-Seq normalization methods using measurement error models
Q90386750	Systematic discovery of novel and valuable plant gene modules by large-scale RNA-seq samples
Q91804068	Systematic evaluation of RNA-Seq preparation protocol performance
Q91698885	Systematic evaluation of differential splicing tools for RNA-seq studies
Q30688271	Systematic evaluation of spliced alignment programs for RNA-seq data
Q64053373	Systematic identification and validation of the reference genes from 60 RNA-Seq libraries in the scallop Mizuhopecten yessoensis
Q38675223	Systematic identification of cancer-related long noncoding RNAs and aberrant alternative splicing of quintuple-negative lung adenocarcinoma through RNA-Seq
Q34450998	Systematic integration of RNA-Seq statistical algorithms for accurate detection of differential gene expression patterns
Q21145302	Systematically differentiating functions for alternatively spliced isoforms through integrating RNA-seq data
Q38537092	Systematically evaluating interfaces for RNA-seq analysis from a life scientist perspective
Q34492241	T-REx: Transcriptome analysis webserver for RNA-seq Expression data
Q39168840	TACO produces robust multisample transcriptome assemblies from RNA-seq
Q58755295	TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data
Q64097072	TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data
Q91345425	TCR sequencing paired with massively parallel 3' RNA-seq reveals clonotypic T cell signatures
Q88989934	TEcandidates: prediction of genomic origin of expressed transposable elements using RNA-seq data
Q36591759	TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets
Q35538386	TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads
Q30652860	TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference
Q112720545	TPM, FPKM, or Normalized Counts? A Comparative Study of Quantification Measures for the Analysis of RNA-seq Data from the NCI Patient-Derived Models Repository
Q34391318	TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes.
Q33559109	TRAPR: R Package for Statistical Analysis and Visualization of RNA-Seq Data
Q59638656	TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads
Q36213572	TRPM2 SNP genotype previously associated with susceptibility to Rhodococcus equi pneumonia in Quarter Horse foals displays differential gene expression identified using RNA-Seq.
Q40855944	TRUFA: A User-Friendly Web Server for de novo RNA-seq Analysis Using Cluster Computing.
Q30886773	Targeted Integration of RNA-Seq and Metabolite Data to Elucidate Curcuminoid Biosynthesis in Four Curcuma Species
Q40547402	Targeted RNA-Seq profiling of splicing pattern in the DMD gene: exons are mostly constitutively spliced in human skeletal muscle
Q112715441	Targeted RNA-seq improves efficiency, resolution, and accuracy of allele specific expression for human term placentas
Q64118818	Targeted RNA-seq successfully identifies normal and pathogenic splicing events in breast/ovarian cancer susceptibility and Lynch syndrome genes
Q58762033	Targeted enrichment outperforms other enrichment techniques and enables more multi-species RNA-Seq analyses
Q61443070	Targeted expression profiling by RNA-Seq improves detection of cellular dynamics during pregnancy and identifies a role for T cells in term parturition
Q92708325	Targeted variant detection using unaligned RNA-Seq reads
Q37475532	Technical variations in low-input RNA-seq methodologies
Q47126948	Telomere heterogeneity linked to metabolism and pluripotency state revealed by simultaneous analysis of telomere length and RNA-seq in the same human embryonic stem cell
Q35996650	Temperature expression patterns of genes and their coexpression with LncRNAs revealed by RNA-Seq in non-heading Chinese cabbage
Q91233862	Template-switching mechanism of a group II intron-encoded reverse transcriptase and its implications for biological function and RNA-Seq
Q112278621	Temporal Transcriptional Responses of a Vibrio alginolyticus Strain to Podoviridae Phage HH109 Revealed by RNA-Seq
Q61444678	Temporal dynamics in meta longitudinal RNA-Seq data
Q97542168	Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data
Q31054019	Testing for association between RNA-Seq and high-dimensional data
Q36049373	Testis-specific RNA-Seq of Calligrapha (Chrysomelidae) as a transcriptomic resource for male-biased gene inquiry in Coleoptera
Q46509268	The ABRF Next Generation Sequencing Study: Multi-platform and Cross-methodological Reproducibility of Transcriptome Profiling by RNA-seq
Q58117170	The Anemonia viridis Venom: Coupling Biochemical Purification and RNA-Seq for Translational Research
Q30689351	The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations
Q93375003	The Clinicopathological Significance and Correlative Signaling Pathways of an Autophagy-Related Gene, Ambra1, in Breast Cancer: a Study of 25 Microarray RNA-Seq Datasets and in-House Gene Silencing
Q40095240	The Entomopathogenic Fungi Isaria fumosorosea Plays a Vital Role in Suppressing the Immune System of Plutella xylostella: RNA-Seq and DGE Analysis of Immunity-Related Genes.
Q93090329	The GATK joint genotyping workflow is appropriate for calling variants in RNA-seq experiments
Q30980468	The Impact of Normalization Methods on RNA-Seq Data Analysis.
Q37229643	The Impact of RNA-seq Alignment Pipeline on Detection of Differentially Expressed Genes
Q98201169	The Impact of the Deepwater Horizon Oil Spill upon Lung Health-Mouse Model-Based RNA-Seq Analyses
Q101461646	The Importance of Earth Reference Controls in Spaceflight -Omics Research: Characterization of Nucleolin Mutants from the Seedling Growth Experiments
Q104736343	The Inhibitory Effects of Recombinant Hespintor Combined with Sorafenib on Transplanted Human Hepatoma in Nude Mice, and Transcriptional Regulation of Hespintor Based on RNA-Seq
Q31146318	The Lair: a resource for exploratory analysis of published RNA-Seq data
Q112294312	The Landscape of Microbial Composition and Associated Factors in Pancreatic Ductal Adenocarcinoma Using RNA-Seq Data
Q120755648	The Machine-Learning-Mediated Interface of Microbiome and Genetic Risk Stratification in Neuroblastoma Reveals Molecular Pathways Related to Patient Survival
Q28822105	The Mechanisms of Maize Resistance to Fusarium verticillioides by Comprehensive Analysis of RNA-seq Data
Q33798046	The Model-Based Study of the Effectiveness of Reporting Lists of Small Feature Sets Using RNA-Seq Data
Q56978590	The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-Seq
Q112296904	The Novel Key Genes of Non-obstructive Azoospermia Affect Spermatogenesis: Transcriptomic Analysis Based on RNA-Seq and scRNA-Seq Data
Q38441762	The Novel Landscape of Long Non-Coding RNAs in Response to Human Foamy Virus Infection Characterized by RNA-Seq
Q31017787	The Orthology Clause in the Next Generation Sequencing Era: Novel Reference Genes Identified by RNA-seq in Humans Improve Normalization of Neonatal Equine Ovary RT-qPCR Data
Q52571950	The Physcomitrella patens gene atlas project: large scale RNA-seq based expression data.
Q39298431	The RNA-Seq approach to studying the expression of mosquito mitochondrial genes.
Q61899782	The RNA-Seq-based high resolution gene expression atlas of chickpea (Cicer arietinum L.) reveals dynamic spatio-temporal changes associated with growth and development
Q42776911	The RNA-seq analysis suggests a potential multi-component complement system in oyster Crassostrea gigas
Q69502634	The RNA-seq approach to discriminate gene expression profiles in response to Beauveria bassiana and Micrococcus luteus microbial pathogens on Actias selene (Lepidoptera: Saturniidae)
Q42774220	The RNA-seq approach to discriminate gene expression profiles in response to melatonin on cucumber lateral root formation
Q90427278	The RNA-seq transcriptomic analysis reveals genes mediating salt tolerance through rapid triggering of ion transporters in a mutant barley
Q36332136	The RNASeq-er API - a gateway to systematically updated analysis of public RNA-Seq data.
Q112277935	The Regulatory Network and Role of the circRNA-miRNA-mRNA ceRNA Network in the Progression and the Immune Response of Wilms Tumor Based on RNA-Seq
Q98619439	The Regulatory Network of CMPG1-V in Wheat-Blumeria graminis f. sp. tritici Interaction Revealed by Temporal Profiling Using RNA-Seq
Q36083576	The Vigna unguiculata Gene Expression Atlas (VuGEA) from de novo assembly and quantification of RNA-seq data provides insights into seed maturation mechanisms
Q92797176	The Zea mays mutants opaque2 and opaque16 disclose lysine change in waxy maize as revealed by RNA-Seq
Q38245590	The application of RNA-seq to the comprehensive analysis of plant mitochondrial transcriptomes
Q30565895	The bench scientist's guide to statistical analysis of RNA-Seq data
Q35040500	The biology of nematode- and IL4Rα-dependent murine macrophage polarization in vivo as defined by RNA-Seq and targeted lipidomics.
Q28818571	The choreography of the chemical defensome response to insecticide stress: insights into the Anopheles stephensi transcriptome using RNA-Seq
Q33566616	The clinical value of lncRNA NEAT1 in digestive system malignancies: A comprehensive investigation based on 57 microarray and RNA-seq datasets
Q92930818	The combination of WGS and RNA-Seq is superior to conventional diagnostic tests in multiple myeloma: Ready for prime time?
Q95649774	The combined analysis as the best strategy for Dual RNA-Seq mapping
Q30844402	The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance
Q30811241	The cytochrome P450 genes of channel catfish: their involvement in disease defense responses as revealed by meta-analysis of RNA-Seq data sets
Q58883612	The devil in the details of RNA-seq
Q36493269	The diverse applications of RNA-seq for functional genomic studies in Aspergillus fumigatus
Q31108080	The exon quantification pipeline (EQP): a comprehensive approach to the quantification of gene, exon and junction expression from RNA-seq data
Q52838026	The fractured landscape of RNA-seq alignment: the default in our STARs.
Q30978110	The global transcriptional landscape of Bacillus amyloliquefaciens XH7 and high-throughput screening of strong promoters based on RNA-seq data
Q30987885	The identification and characterization of novel transcripts from RNA-seq data.
Q97530717	The identification of differentially expressed genes in male and female gametophytes of simple thalloid liverwort Pellia endiviifolia sp. B using an RNA-seq approach
Q36381051	The identification of switch-like alternative splicing exons among multiple samples with RNA-Seq data
Q34525647	The impact of amplification on differential expression analyses by RNA-seq
Q28392048	The impact of oil spill to lung health--Insights from an RNA-seq study of human airway epithelial cells
Q41183255	The impact of quality filter for RNA-Seq.
Q34975742	The importance of tissue specificity for RNA-seq: highlighting the errors of composite structure extractions
Q41255342	The integrated analysis of RNA-seq and microRNA-seq depicts miRNA-mRNA networks involved in Japanese flounder (Paralichthys olivaceus) albinism
Q30925913	The level of residual dispersion variation and the power of differential expression tests for RNA-Seq data
Q38779709	The long non-coding RNA expression profile of Coxsackievirus A16 infected RD cells identified by RNA-seq.
Q38693313	The power and promise of RNA-seq in ecology and evolution
Q47149216	The protective value of miR-204-5p for prognosis and its potential gene network in various malignancies: a comprehensive exploration based on RNA-seq high-throughput data and bioinformatics
Q38682366	The quantitative impact of read mapping to non-native reference genomes in comparative RNA-Seq studies
Q91279351	The recognition of development-related genes in the testis and MAGs of time-series Harmonia axyridis adults using a time-series analysis by RNA-seq
Q38942549	The response of Isidorella newcombi to copper exposure: Using an integrated biological framework to interpret transcriptomic responses from RNA-seq analysis.
Q36676585	The reverse transcription signature of N-1-methyladenosine in RNA-Seq is sequence dependent
Q94457822	The role of Candida albicans in root caries biofilms: an RNA-seq analysis
Q112938783	The role of the SVP gene family in controlling bud dormancy
Q34667334	The sialotranscriptome of Amblyomma triste, Amblyomma parvum and Amblyomma cajennense ticks, uncovered by 454-based RNA-seq.
Q30559741	The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis
Q34152797	The study of eQTL variations by RNA-seq: from SNPs to phenotypes
Q42773924	The synovial microenvironment of osteoarthritic joints alters RNA-seq expression profiles of human primary articular chondrocytes
Q40064441	The transcriptional landscape of Rhizoctonia solani AG1-IA during infection of soybean as defined by RNA-seq
Q34655388	The transcriptome of Leishmania major in the axenic promastigote stage: transcript annotation and relative expression levels by RNA-seq.
Q35740346	The use of exome capture RNA-seq for highly degraded RNA with application to clinical cancer sequencing
Q33776304	The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment
Q35073265	The utility of shallow RNA-Seq for documenting differential gene expression in genes with high and low levels of expression
Q38958931	Threshold-seq: a tool for determining the threshold in short RNA-seq datasets.
Q113152580	Thyroid hormone divergence as primary factor of speciation: evidences from phenotype and RNA-seq
Q84452832	Tight control of mycotoxin biosynthesis gene expression in Aspergillus flavus by temperature as revealed by RNA-Seq
Q91542894	Time Series RNA-seq in Pigeonpea Revealed the Core Genes in Metabolic Pathways under Aluminum Stress
Q39740841	Time series expression analyses using RNA-seq: a statistical approach
Q35754583	Time-Course RNA-Seq Analysis Reveals Transcriptional Changes in Rice Plants Triggered by Rice stripe virus Infection
Q35927322	Time-Course Transcriptome Analysis Reveals Resistance Genes of Panax ginseng Induced by Cylindrocarpon destructans Infection Using RNA-Seq
Q89839111	Time-course RNA-seq analysis provides an improved understanding of gene regulation during the formation of nodule-like structures in rice
Q112281958	Time-course RNA-seq analysis reveals stage-specific and melatonin-triggered gene expression patterns during the hair follicle growth cycle in Capra hircus
Q97686778	Time-resolved RNA-seq provided a new understanding of intestinal immune response of European eel (Anguilla anguilla) following infection with Aeromonas hydrophila
Q91663195	Time-resolved dual RNA-seq of tissue uncovers Pseudomonas plecoglossicida key virulence genes in host-pathogen interaction with Epinephelus coioides
Q39345180	Time-resolved dual RNA-seq reveals extensive rewiring of lung epithelial and pneumococcal transcriptomes during early infection
Q39108001	Time-series RNA-seq analysis package (TRAP) and its application to the analysis of rice, Oryza sativa L. ssp. Japonica, upon drought stress
Q40368535	Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host-pathogen transcriptomes.
Q55069426	Tissue expression of EphB2 and RNA-seq analysis during embryo im-plantation in Meishan pigs.
Q42169811	Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data
Q37666053	Tissue-specific RNA-Seq in human evoked inflammation identifies blood and adipose LincRNA signatures of cardiometabolic diseases
Q112637668	TissueNexus: a database of human tissue functional gene networks built with a large compendium of curated RNA-seq data
Q33728579	ToNER: A tool for identifying nucleotide enrichment signals in feature-enriched RNA-seq data
Q31012930	ToPASeq: an R package for topology-based pathway analysis of microarray and RNA-Seq data
Q48033284	TomExpress, a unified tomato RNA-Seq platform for visualization of expression data, clustering and correlation networks.
Q92258502	Tomato RNA-seq Data Mining Reveals the Taxonomic and Functional Diversity of Root-Associated Microbiota
Q24655505	TopHat: discovering splice junctions with RNA-Seq
Q34528337	Topographical transcriptome mapping of the mouse medial ganglionic eminence by spatially resolved RNA-seq
Q102332204	Total Platelet Transcriptomics and Its Network Analysis by RNA-Seq and miRNA-Seq and PCA Application in Essential Thrombocythaemia
Q42775893	Total RNA-seq to identify pharmacological effects on specific stages of mRNA synthesis
Q90019595	Toward Cell Type-Specific In Vivo Dual RNA-Seq
Q30363613	Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow
Q92216262	Towards Improving Skin Cancer Diagnosis by Integrating Microarray and RNA-seq Datasets
Q42774665	Towards an improved apple reference transcriptome using RNA-seq
Q38522397	Towards next generation CHO cell biology: Bioinformatics methods for RNA-Seq-based expression profiling
Q33571089	Towards reliable isoform quantification using RNA-SEQ data
Q35051525	Towards the integration, annotation and association of historical microarray experiments with RNA-seq
Q54943557	Toxicity and Transcriptome Sequencing (RNA-seq) Analyses of Adult Zebrafish in Response to Exposure Carboxymethyl Cellulose Stabilized Iron Sulfide Nanoparticles.
Q42778107	Toxicogenomics of the flame retardant tris (2-butoxyethyl) phosphate in HepG2 cells using RNA-seq
Q34851594	Tracing the transcriptomic changes in synthetic Trigenomic allohexaploids of Brassica using an RNA-Seq approach
Q36210872	Traditional versus 3' RNA-seq in a non-model species
Q30444246	Transciptome analysis of the gill and swimbladder of Takifugu rubripes by RNA-Seq
Q99632315	Transcript Assembly and Quantification by RNA-Seq Reveals Significant Differences in Gene Expression and Genetic Variants in Mosquitoes of the Culex pipiens (Diptera: Culicidae) Complex
Q35860802	Transcript Quantification by RNA-Seq Reveals Differentially Expressed Genes in the Red and Yellow Fruits of Fragaria vesca
Q34988639	Transcript assembly and quantification by RNA-Seq reveals differentially expressed genes between soft-endocarp and hard-endocarp hawthorns
Q24627354	Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Q21093194	Transcript length bias in RNA-seq data confounds systems biology
Q28651703	Transcript profiling of Populus tomentosa genes in normal, tension, and opposite wood by RNA-seq
Q40050850	Transcript profiling of the immunological interactions between Actinobacillus pleuropneumoniae serotype 7 and the host by dual RNA-seq.
Q55424168	Transcript quantification with RNA-Seq data.
Q37275276	Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
Q57881269	Transcription Factor Co-expression Networks of Adipose RNA-Seq Data Reveal Regulatory Mechanisms of Obesity
Q60922031	Transcription of human endogenous retroviruses in human brain by RNA-seq analysis
Q55363696	Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-Seq.
Q123499153	Transcriptional Control of by an ArsR-Like Regulator in ND132
Q50057475	Transcriptional Profiling Using RNA-Seq to Study Hypoxia-Mediated Gene Regulation.
Q112718571	Transcriptional Profiling of Exosomes Derived from Staphylococcus aureus-Infected Bovine Mammary Epithelial Cell Line MAC-T by RNA-Seq Analysis
Q38448815	Transcriptional Profiling of the Trichoderma reesei Recombinant Strain HJ48 by RNA-Seq
Q37054687	Transcriptional profiling by RNA-Seq of peri-attachment porcine embryos generated by a variety of assisted reproductive technologies.
Q64273536	Transcriptional profiling of coaggregation interactions between Streptococcus gordonii and Veillonella parvula by Dual RNA-Seq
Q90248560	Transcriptional profiling of genes in tongue epithelial tissue from immature and adult rats by the RNA-Seq technique
Q52805196	Transcriptional profiling of murine osteoblast differentiation based on RNA-seq expression analyses.
Q36053525	Transcriptional profiling of psoriasis using RNA-seq reveals previously unidentified differentially expressed genes.
Q34552891	Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq
Q47552392	Transcriptome Analysis Based on RNA-Seq in Understanding Pathogenic Mechanisms of Diseases and the Immune System of Fish: A Comprehensive Review.
Q96132129	Transcriptome Analysis by RNA-Seq Reveals Genes Related to Plant Height in Two Sets of Parent-hybrid Combinations in Easter lily (Lilium longiflorum)
Q33695190	Transcriptome Analysis of Salicylic Acid Treatment in Rehmannia glutinosa Hairy Roots Using RNA-seq Technique for Identification of Genes Involved in Acteoside Biosynthesis
Q96352046	Transcriptome Analysis of the Gene Expression Profiles Associated with Fungal Keratitis in Mice Based on RNA-Seq
Q55034292	Transcriptome Analysis of the Thymus in Short-Term Calorie-Restricted Mice Using RNA-seq.
Q92376987	Transcriptome Changes of Skeletal Muscle RNA-Seq Speculates the Mechanism of Postprandial Hyperglycemia in Diabetic Goto-Kakizaki Rats During the Early Stage of T2D
Q42773793	Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis.
Q35745869	Transcriptome Profiles of Human Lung Epithelial Cells A549 Interacting with Aspergillus fumigatus by RNA-Seq
Q100954751	Transcriptome Profiling Analysis of Tea Plant (Camellia sinensis) using Oxford Nanopore Long-read RNA-Seq Technology
Q102333331	Transcriptome Profiling of Rust Resistance in Switchgrass Using RNA-Seq Analysis
Q52656772	Transcriptome Sequencing: RNA-Seq.
Q92347208	Transcriptome Studies in Trypanosoma cruzi Using RNA-seq
Q38746541	Transcriptome altered by latent human cytomegalovirus infection on THP-1 cells using RNA-seq
Q100310961	Transcriptome analysis based on RNA-seq of common innate immune responses of flounder cells to IHNV, VHSV, and HIRRV
Q48499978	Transcriptome analysis of 'Huanghai No. 2' Fenneropenaeus chinensis response to WSSV using RNA-seq.
Q35820900	Transcriptome analysis of Brassica napus pod using RNA-Seq and identification of lipid-related candidate genes
Q35068342	Transcriptome analysis of Pinus monticola primary needles by RNA-seq provides novel insight into host resistance to Cronartium ribicola
Q96349658	Transcriptome analysis of a novel maize bsd C4 mutant using RNA-seq
Q91230350	Transcriptome analysis of boar spermatozoa with different freezability using RNA-Seq
Q91855477	Transcriptome analysis of human brain microvascular endothelial cells response to Neisseria meningitidis and its antigen MafA using RNA-seq
Q33756712	Transcriptome analysis of psoriasis in a large case-control sample: RNA-seq provides insights into disease mechanisms
Q34549898	Transcriptome analysis of rice root heterosis by RNA-Seq
Q112252706	Transcriptome analysis of the New Zealand sea urchin Kina (Evechinus Chloroticus)
Q31092092	Transcriptome analysis using RNA-Seq
Q40062614	Transcriptome analysis, using RNA-seq, of Lomandra longifolia roots infected with Phytophthora cinnamomi reveals the complexity of the resistance response
Q34002224	Transcriptome and targetome analysis in MIR155 expressing cells using RNA-seq
Q41205104	Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads
Q30840025	Transcriptome assembly and quantification from Ion Torrent RNA-Seq data.
Q92017297	Transcriptome assembly from long-read RNA-seq alignments with StringTie2
Q28582262	Transcriptome characterization by RNA-Seq reveals the involvement of the complement components in noise-traumatized rat cochleae
Q34277551	Transcriptome characterization by RNA-seq unravels the mechanisms of butyrate-induced epigenomic regulation in bovine cells
Q98503898	Transcriptome dataset for RNA-seq analysis of axolotl embryonic oropharyngeal endoderm explants
Q102220234	Transcriptome dataset of human corneal endothelium based on ribosomal RNA-depleted RNA-Seq data
Q55261552	Transcriptome display during tilapia sex determination and differentiation as revealed by RNA-Seq analysis.
Q37151182	Transcriptome landscape of Synechococcus elongatus PCC 7942 for nitrogen starvation responses using RNA-seq.
Q112713280	Transcriptome profiling based on Illumina- and SMRT-based RNA-seq reveals circadian regulation of key pathways in flower bud development in walnut
Q55445629	Transcriptome profiling by RNA-Seq reveals differentially expressed genes related to fruit development and ripening characteristics in strawberries (Fragaria × ananassa).
Q50416510	Transcriptome profiling from formalin-fixed, paraffin-embedded tumor specimens by RNA-seq.
Q34345253	Transcriptome profiling of CTLs regulated by rapamycin using RNA-Seq
Q34649536	Transcriptome profiling of Giardia intestinalis using strand-specific RNA-seq
Q35845526	Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq
Q36267794	Transcriptome profiling of expression changes during neuronal death by RNA-Seq
Q46684711	Transcriptome profiling of larvae of the marine medaka Oryzias melastigma by Illumina RNA-seq
Q112288341	Transcriptome profiling of pepper leaves by RNA-Seq during an incompatible and a compatible pepper-tobamovirus interaction
Q42775100	Transcriptome profiling of prostate tumor and matched normal samples by RNA-Seq
Q47418920	Transcriptome profiling of sorted endoreduplicated nuclei from tomato fruits: how the global shift in expression ascribed to DNA ploidy influences RNA-Seq data normalization and interpretation.
Q59348976	Transcriptome profiling using Illumina- and SMRT-based RNA-seq of hot pepper for in-depth understanding of genes involved in CMV infection
Q35673749	Transcriptome response to infraorbital nerve transection in the gonadally intact male rat barrel cortex: RNA-seq
Q42773569	Transcriptome sequencing (RNA-Seq) of human endobronchial biopsies: asthma versus controls
Q42573571	Transcriptome sequencing (RNA-seq) analysis of the effects of metal nanoparticle exposure on the transcriptome of Chlamydomonas reinhardtii
Q43882588	Transcriptome sequencing and de novo analysis for Oviductus Ranae of Rana chensinensis using illumina RNA-Seq technology.
Q62748935	Transcriptome signature of the lactation process, identified by meta-analysis of microarray and RNA-Seq data
Q28648217	Transcriptome-Wide Identification of miRNAs and Their Targets from Typha angustifolia by RNA-Seq and Their Response to Cadmium Stress
Q28648212	Transcriptomic Analysis of Drought Stress Responses in Ammopiptanthus mongolicus Leaves Using the RNA-Seq Technique
Q36082926	Transcriptomic Analysis of Multipurpose Timber Yielding Tree Neolamarckia cadamba during Xylogenesis Using RNA-Seq
Q41525403	Transcriptomic Analysis of Oenococcus oeni SD-2a Response to Acid Shock by RNA-Seq
Q99237690	Transcriptomic Analysis of Rhodococcus opacus R7 Grown on o-Xylene by RNA-Seq
Q33634224	Transcriptomic Identification of Drought-Related Genes and SSR Markers in Sudan Grass Based on RNA-Seq
Q92602894	Transcriptomic Profiling of Adipose Derived Stem Cells Undergoing Osteogenesis by RNA-Seq
Q34657009	Transcriptomic analysis across nasal, temporal, and macular regions of human neural retina and RPE/choroid by RNA-Seq
Q39042764	Transcriptomic analysis by RNA-seq reveals AP-1 pathway as key regulator that green tea may rely on to inhibit lung tumorigenesis
Q30533924	Transcriptomic analysis of 'Suli' pear (Pyrus pyrifolia white pear group) buds during the dormancy by RNA-Seq
Q35195898	Transcriptomic analysis of American ginseng seeds during the dormancy release process by RNA-Seq
Q38479520	Transcriptomic analysis of Asiatic lily in the process of vernalization via RNA-seq
Q30520648	Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq.
Q38448025	Transcriptomic analysis of Pseudostellariae Radix from different fields using RNA-seq
Q42774189	Transcriptomic analysis of Staphylococcus aureus using microarray and advanced next-generation RNA-seq technologies
Q38484471	Transcriptomic analysis of cut tree peony with glucose supply using the RNA-Seq technique
Q58787159	Transcriptomic analysis of drought stress responses of sea buckthorn (Hippophae rhamnoidessubsp. sinensis) by RNA-Seq
Q41423106	Transcriptomic analysis of nickel exposure in Sphingobium sp. ba1 cells using RNA-seq
Q34162578	Transcriptomic analysis of rice (Oryza sativa) developing embryos using the RNA-Seq technique
Q34549168	Transcriptomic analysis of rice (Oryza sativa) endosperm using the RNA-Seq technique
Q33699502	Transcriptomic analysis of the response of Pseudomonas fluorescens to epigallocatechin gallate by RNA-seq
Q36641448	Transcriptomic analysis of the stress response to weaning at housing in bovine leukocytes using RNA-seq technology
Q38450973	Transcriptomic changes associated with DKK4 overexpression in pancreatic cancer cells detected by RNA-Seq
Q42775540	Transcriptomic changes during the pre-receptive to receptive transition in human endometrium detected by RNA-Seq.
Q38480983	Transcriptomic dissection of myogenic differentiation signature in caprine by RNA-Seq.
Q90316438	Transcriptomic hallmarks of bone remodelling revealed by RNA-Seq profiling in blood of Arabian horses during racing training regime
Q58775959	Transcriptomic profile analysis of brain microvascular pericytes in spontaneously hypertensive rats by RNA-Seq
Q40142134	Transcriptomic profile analysis of mouse neural tube development by RNA-Seq.
Q30926838	Transcriptomic profiling of linolenic acid-responsive genes in ROS signaling from RNA-seq data in Arabidopsis.
Q35066465	Transcriptomic profiling of rat liver samples in a comprehensive study design by RNA-Seq
Q41097886	Transcriptomic responses of mixed cultures of ascomycete fungi to lignocellulose using dual RNA-seq reveal inter-species antagonism and limited beneficial effects on CAZyme expression.
Q36814577	Transcriptomics Analysis of Candida albicans Treated with Huanglian Jiedu Decoction Using RNA-seq
Q34320924	Transcriptomics in the RNA-seq era.
Q39298486	Transcriptomics-based analysis using RNA-Seq of the coconut (Cocos nucifera) leaf in response to yellow decline phytoplasma infection.
Q39033082	Transformation and model choice for RNA-seq co-expression analysis
Q30731790	Transforming RNA-Seq data to improve the performance of prognostic gene signatures
Q34086477	Transposase mediated construction of RNA-seq libraries.
Q38485557	Trascriptome analysis of the Paciﬁc white shrimp Litopenaeus vannamei exposed to nitrite by RNA-seq
Q31139096	TreeExp1.0: R Package for Analyzing Expression Evolution Based on RNA-Seq Data.
Q35934860	Trimming of sequence reads alters RNA-Seq gene expression estimates
Q102149192	Triple RNA-Seq Reveals Synergy in a Human Virus-Fungus Co-infection Model
Q112720809	Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa
Q33580553	Triterpenoid saponin biosynthetic pathway profiling and candidate gene mining of the Ilex asprella root using RNA-Seq
Q36619937	TrueSight: a new algorithm for splice junction detection using RNA-seq
Q115104354	Twists and Turns in the Salicylate Catabolism of , Revealing New Roles of the 3-Hydroxyanthranilate Pathway
Q42777893	Two's company: studying interspecies relationships with dual RNA-seq
Q92528895	Two-factor ANOVA of SSH and RNA-seq analysis reveal development-associated Pi-starvation genes in oilseed rape
Q89876146	Tximeta: Reference sequence checksums for provenance identification in RNA-seq
Q47123469	UClncR: Ultrafast and comprehensive long non-coding RNA detection from RNA-seq.
Q112646079	Ultrafast functional profiling of RNA-seq data for nonmodel organisms
Q36327865	Ultrasensitive detection of TCR hypervariable-region sequences in solid-tissue RNA-seq data.
Q37606921	UnSplicer: mapping spliced RNA-Seq reads in compact genomes and filtering noisy splicing.
Q43808805	Uncovering Hemocyanin Subunit Heterogeneity in Penaeid Shrimp using RNA-Seq
Q114813274	Uncovering Transcriptional Responses to Fractional Gravity in Arabidopsis Roots
Q33961117	Uncovering the complexity of transcriptomes with RNA-Seq.
Q30866842	Understanding gene regulatory mechanisms by integrating ChIP-seq and RNA-seq data: statistical solutions to biological problems
Q38809083	Understanding metabolite transport and metabolism in C4 plants through RNA-seq
Q42774087	Understanding of auxin regulation during somatic embryogenesis in cotton by RNA-seq and sRNA-seq
Q21131909	Understanding strategy of nitrate and urea assimilation in a Chinese strain of Aureococcus anophagefferens through RNA-seq analysis
Q49831206	Understanding the functional role of genistein in the bone differentiation in mouse osteoblastic cell line MC3T3-E1 by RNA-seq analysis.
Q38433826	Understanding the genomic basis of adaptive response to variable osmotic niches in freshwater prawns: a comparative intraspecific RNA-Seq analysis of Macrobrachium australiense
Q38430237	Understanding the molecular mechanisms underlying the effects of light intensity on flavonoid production by RNA-seq analysis in Epimedium pseudowushanense B.L.Guo.
Q37822837	Understanding the pathogenesis of Alzheimer's disease: will RNA-Seq realize the promise of transcriptomics?
Q91182450	Understanding the stress responses of Kluyveromyces marxianus after an arrest during high-temperature ethanol fermentation based on integration of RNA-Seq and metabolite data
Q30829889	Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis
Q60048639	Unigene-based RNA-seq provides insights on drought stress responses in Marsdenia tenacissima
Q35838839	Union Exon Based Approach for RNA-Seq Gene Quantification: To Be or Not to Be?
Q30869286	Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses
Q58769123	Unique Molecular Identifiers reveal a novel sequencing artefact with implications for RNA-Seq based gene expression analysis
Q31159823	Unique genetic responses revealed in RNA-seq of the spleen of chickens stimulated with lipopolysaccharide and short-term heat.
Q39345459	Unraveling chloroplast transcriptomes with ChloroSeq, an organelle RNA-Seq bioinformatics pipeline
Q89706270	Unraveling epigenomic abnormality in azoospermic human males by WGBS, RNA-Seq, and transcriptome profiling analyses
Q98193576	Unraveling the mechanisms of resistance to Sclerotium rolfsii in peanut (Arachis hypogaea L.) using comparative RNA-Seq analysis of resistant and susceptible genotypes
Q35937979	Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis.
Q98459145	Unravelling the changes during induced vitellogenesis in female European eel through RNA-Seq: What happens to the liver?
Q96692888	Unravelling the virome in birch: RNA-Seq reveals a complex of known and novel viruses
Q91410757	Unsupervised feature selection algorithm for multiclass cancer classification of gene expression RNA-Seq data
Q41554950	Updating RNA-Seq analyses after re-annotation
Q96685733	Use of Dual RNA-seq for Systems Biology Analysis of Zea mays and Aspergillus flavus Interaction
Q88906166	Use of Partial Least Squares improves the efficacy of removing unwanted variability in differential expression analyses based on RNA-Seq data
Q36314305	Use of RNA-seq data to identify and validate RT-qPCR reference genes for studying the tomato-Pseudomonas pathosystem
Q47823254	Use of RNA-seq to determine variation in canine cytochrome P450 mRNA expression between blood, liver, lung, kidney and duodenum in healthy beagles.
Q33906767	Use of RNA-seq to identify cardiac genes and gene pathways differentially expressed between dogs with and without dilated cardiomyopathy
Q93538371	Use of Synthetic Transcript Pools to Evaluate RNA-Seq Performance and Analytical Methods
Q35025533	Use of a capture-based pathogen transcript enrichment strategy for RNA-Seq analysis of the Francisella tularensis LVS transcriptome during infection of murine macrophages
Q92856451	Using ATAC-seq and RNA-seq to increase resolution in GRN connectivity
Q91640021	Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens
Q28246542	Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations
Q64262627	Using Pan RNA-Seq Analysis to Reveal the Ubiquitous Existence of 5' and 3' End Small RNAs
Q35630196	Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq
Q91149450	Using RNA-Seq Data for the Detection of a Panel of Clinically Relevant Mutations
Q30000033	Using RNA-Seq Data to Evaluate Reference Genes Suitable for Gene Expression Studies in Soybean
Q31131588	Using RNA-Seq SNP data to reveal potential causal mutations related to pig production traits and RNA editing
Q33877361	Using RNA-Seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population.
Q33876939	Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems
Q38647445	Using RNA-Seq to Discover Genetic Polymorphisms That Produce Hidden Splice Variants
Q96686835	Using RNA-Seq to Explore the Repair Mechanism of the Three Methods and Three-Acupoint Technique on DRGs in Sciatic Nerve Injured Rats
Q99414324	Using RNA-Seq to Identify Reference Genes of the Transition from Brown to White Adipose Tissue in Goats
Q112284780	Using RNA-Seq to Investigate Immune-Metabolism Features in Immunocompromised Patients With Sepsis
Q35505341	Using RNA-Seq to assemble a rose transcriptome with more than 13,000 full-length expressed genes and to develop the WagRhSNP 68k Axiom SNP array for rose (Rosa L.).
Q34648906	Using RNA-Seq to profile soybean seed development from fertilization to maturity
Q91263214	Using RNA-Seq with 11 marker genes to evaluate 1,4-dioxane compared with typical genotoxic and non-genotoxic rat hepatocarcinogens
Q34038636	Using RNA-seq and targeted nucleases to identify mechanisms of drug resistance in acute myeloid leukemia
Q42068895	Using RNA-seq data to select reference genes for normalizing gene expression in apple roots
Q40413698	Using RNA-seq for Analysis of Differential Gene Expression in Fungal Species
Q35880865	Using RNA-seq to Profile Gene Expression of Spikelet Development in Response to Temperature and Nitrogen during Meiosis in Rice (Oryza sativa L.).
Q112811502	Using RNA-seq to characterize pollen–stigma interactions for pollination studies
Q64065047	Using RNA-seq to characterize responses to 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor herbicide resistance in waterhemp (Amaranthus tuberculatus)
Q46299407	Using RNA-seq to determine patterns of sex-bias in gene expression in the brain of the sex-role reversed Gulf Pipefish (Syngnathus scovelli).
Q34109099	Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeast Candida parapsilosis
Q33836821	Using Small RNA-seq Data to Detect siRNA Duplexes Induced by Plant Viruses
Q58801713	Using Supervised Learning Methods for Gene Selection in RNA-Seq Case-Control Studies
Q35995974	Using Synthetic Mouse Spike-In Transcripts to Evaluate RNA-Seq Analysis Tools
Q111900354	Using edgeR software to analyze complex RNA-Seq data
Q50558171	Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq.
Q42775508	Using normalization to resolve RNA-Seq biases caused by amplification from minimal input.
Q30277319	Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons
Q34141742	Utility of RNA-seq and GPMDB protein observation frequency for improving the sensitivity of protein identification by tandem MS
Q34255855	Utilizing RNA-Seq data for de novo coexpression network inference
Q47391654	Utilizing RNA-Seq to Identify Differentially Expressed Genes in Glaucoma Model Tissues, Such as the Rodent Optic Nerve Head.
Q36320409	VCNet: Vector based gene Co-expression Network construction and its application to RNA-seq data
Q47145127	VDJ gene usage among B-cell receptors in ABO-incompatible kidney transplantation determined by RNA-seq Transcriptomic analysis
Q111857973	VELCRO-IP RNA-seq reveals ribosome expansion segment function in translation genome-wide
Q52591417	VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.
Q100444075	VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data
Q89747808	Variability in estimated gene expression among commonly used RNA-seq pipelines
Q36320395	Variance component score test for time-course gene set analysis of longitudinal RNA-seq data
Q41385728	Variance component testing for identifying differentially expressed genes in RNA-seq data
Q47432131	Variant calling from RNA-seq data of the brain transcriptome of pigs and its application for allele-specific expression and imprinting analysis
Q35114464	Variation in RNA-Seq transcriptome profiles of peripheral whole blood from healthy individuals with and without globin depletion
Q113308261	Varistran: Anscombe's variance stabilizing transformation for RNA-seq gene expression data
Q112298985	Verifying explainability of a deep learning tissue classifier trained on RNA-seq data
Q30911053	Verifying the markers of ovarian cancer using RNA-seq data
Q33635483	Vicinal: a method for the determination of ncRNA ends using chimeric reads from RNA-seq experiments.
Q42042155	Viewing RNA-seq data on the entire human genome.
Q91881834	Visualization and analysis of RNA-Seq assembly graphs
Q36319656	Visualizing the structure of RNA-seq expression data using grade of membership models.
Q31133475	Web-based bioinformatics workflows for end-to-end RNA-seq data computation and analysis in agricultural animal species
Q30870431	WemIQ: an accurate and robust isoform quantification method for RNA-seq data
Q92418124	What human sperm RNA-Seq tells us about the microbiome
Q31050282	What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment
Q35878612	WheatExp: an RNA-seq expression database for polyploid wheat.
Q98394420	When DNA gets in the way: A cautionary note for DNA contamination in extracellular RNA-seq studies
Q93580900	Which RNA-Seq Processing Algorithm Should I Pick? A Comparison of RNA-Seq Pipelines Based on Experimental Design, Sample Properties and Sequencing Technology
Q49841634	Whole Transcriptome Profiling: An RNA-Seq Primer and Implications for Pharmacogenomics Research.
Q31123398	Whole blood transcriptional profiling comparison between different milk yield of Chinese Holstein cows using RNA-seq data
Q63213165	Whole exome sequencing (WES) and RNA sequencing (RNA-seq) in routine clinical practice for colorectal cancer (CRC) and non-small cell lung cancer (NSCLC) patients (pts)
Q35511058	Whole exome sequencing of a single osteosarcoma case--integrative analysis with whole transcriptome RNA-seq data.
Q28681164	Whole transcriptome RNA-Seq allelic expression in human brain
Q28727086	Whole transcriptome RNA-Seq analysis of breast cancer recurrence risk using formalin-fixed paraffin-embedded tumor tissue
Q47159723	Whole transcriptome RNA-Seq analysis reveals extensive cell type-specific compartmentalization in Volvox carteri
Q38974527	Whole transcriptome RNA-seq analysis: tumorigenesis and metastasis of melanoma
Q112612554	Whole transcriptome RNA-seq reveals key regulatory factors involved in type 2 diabetes pathology in peripheral fat of Asian Indians
Q34413222	Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq
Q36915293	Whole transcriptome expression analysis and comparison of two different strains of Plasmodium falciparum using RNA-Seq
Q36193304	Whole transcriptome expression profiling of mouse limb tendon development by using RNA-seq
Q35508852	Whole-Transcriptome profiling of formalin-fixed, paraffin-embedded renal cell carcinoma by RNA-seq
Q89474815	Whole-genome and time-course dual RNA-Seq analyses reveal chronic pathogenicity-related gene dynamics in the ginseng rusty root rot pathogen Ilyonectria robusta
Q28821529	Whole-genome de novo sequencing, combined with RNA-Seq analysis, reveals unique genome and physiological features of the amylolytic yeast Saccharomycopsis fibuligera and its interspecies hybrid
Q48305871	Whole-transcriptome RNA-seq, gene set enrichment pathway analysis, and exon coverage analysis of two plastid RNA editing mutants.
Q90583197	Whole-transcriptome sequencing (RNA-seq) analyses of the zebrafish liver cell line, ZFL, after acute exposure to Cu2+ ions
Q99708375	Whole-transcriptome sequencing (RNA-seq) study of the ZFL zebrafish liver cell line after acute exposure to Cd2+ ions
Q42119301	Whole-transcriptome shotgun sequencing (RNA-seq) screen reveals upregulation of cellobiose and motility operons of Lactobacillus ruminis L5 during growth on tetrasaccharides derived from barley β-glucan
Q36002387	Why weight? Modelling sample and observational level variability improves power in RNA-seq analyses
Q96689295	Wide Cross-species RNA-Seq Comparison Reveals Convergent Molecular Mechanisms Involved in Nickel Hyperaccumulation Across Dicotyledons
Q102140259	Widespread regulation of gene expression by glucocorticoids in chondrocytes from patients with osteoarthritis as determined by RNA-Seq
Q31152577	Workflow for Genome-Wide Determination of Pre-mRNA Splicing Efficiency from Yeast RNA-seq Data
Q91304250	Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database
Q40002458	YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut
Q34633193	Zinc-mediated RNA fragmentation allows robust transcript reassembly upon whole transcriptome RNA-Seq.
Q91268023	[Altered Expression of Neurotransmitters Systems' Genes in the Ventral Tegmental Area of Depressive Male Mice: Data of RNA-Seq]
Q90826285	[Analysis on transcriptionomic characteristics of Naoxintong Capsules in prevention of post-ischemic inflammation based on RNA-Seq technology]
Q89088054	[Changes in the Expression of Dopaminergic Genes in Brain Structures of Male Mice Exposed to Chronic Social Defeat Stress: An RNA-seq Study]
Q52619835	[Identification and analysis of NAC family in ginger(Zingiber officinale) based on RNA-seq data].
Q86181661	[Identifying transcription factors involved in Arabidopsis adventious shoot regeneration by RNA-Seq technology]
Q95530113	[Inhibition analysis of resveratrol against Vibrio parahaemolyticus biofilm based on RNA-Seq technology]
Q30864868	[Prediction of new long non-coding RNA of laryngeal carcinoma by high-throughput RNA-Seq data].
Q95363803	[RNA-Seq and genuine traditional Chinese medicine]
Q54268742	[Study on transcriptome of Oncomelania hupensis before and after Schistosoma japonicum invasion I De novo assembly of data by RNA-Seq].
Q95560742	[Transcriptome analysis of bioenergy plant Miscanthus sinensis Anderss by RNA-Seq]
Q53471367	[Transcriptome analysis of human breast cancer cell lines MCF-7 and MDA-MB- 435 by RNA-seq].
Q31155671	aRNApipe: a balanced, efficient and distributed pipeline for processing RNA-seq data in high-performance computing environments.
Q67231578	baerhunter: an R package for the discovery and analysis of expressed non-coding regions in bacterial RNA-seq data
Q57973796	bcbioRNASeq: R package for bcbio RNA-seq analysis
Q61660405	bcbioRNASeq: R package for bcbio RNA-seq analysis
Q34507635	cDNA normalization by hydroxyapatite chromatography to enrich transcriptome diversity in RNA-seq applications
Q112643430	cdev: a ground-truth based measure to evaluate RNA-seq normalization performance
Q100989518	comparing De Novo Transcriptome Assemblers Using Illumina RNA-Seq Reads
Q30817928	compcodeR--an R package for benchmarking differential expression methods for RNA-seq data.
Q92028260	consensusDE: an R package for assessing consensus of multiple RNA-seq algorithms with RUV correction
Q92515456	contamDE-lm: linear model-based differential gene expression analysis using next-generation RNA-seq data from contaminated tumor samples
Q31021180	contamDE: differential expression analysis of RNA-seq data for contaminated tumor samples
Q122830239	cummeRbund
Q30668844	customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search
Q40411044	dbHT-Trans: An Efficient Tool for Filtering the Protein-Encoding Transcripts Assembled by RNA-Seq According to Search for Homologous Proteins
Q33916606	deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data
Q112648119	dearseq: a variance component score test for RNA-seq differential analysis that effectively controls the false discovery rate
Q39965136	deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns
Q91432470	deltaTE: Detection of Translationally Regulated Genes by Integrative Analysis of Ribo-seq and RNA-seq Data
Q31138311	dupRadar: a Bioconductor package for the assessment of PCR artifacts in RNA-Seq data.
Q30625155	eQTL Mapping Using RNA-seq Data
Q90458229	eQTL mapping of rare variant associations using RNA-seq data: An evaluation of approaches
Q34357558	easyRNASeq: a bioconductor package for processing RNA-Seq data
Q42774946	edgeR for differential RNA-seq and ChIP-seq analysis: an application to stem cell biology
Q30488940	expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform.
Q100534048	flexiMAP: a regression-based method for discovering differential alternative polyadenylation events in standard RNA-seq data
Q112709379	how_are_we_stranded_here: quick determination of RNA-Seq strandedness
Q39016298	hppRNA-a Snakemake-based handy parameter-free pipeline for RNA-Seq analysis of numerous samples
Q60043869	iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data
Q58791356	iMapSplice: Alleviating reference bias through personalized RNA-seq alignment
Q93580789	iPRG-2013: Proteome Informatics Research Group Study: Using RNA-Seq Data to Refine Proteomic Data Analysis
Q46069909	iPRG-2013: Proteome Informatics Research Group Study: Using RNA-Seq Data to Refine Proteomic Data Analysis.
Q89579245	iREAD: a tool for intron retention detection from RNA-seq data
Q30883063	iRNA-seq: computational method for genome-wide assessment of acute transcriptional regulation from total RNA-seq data
Q30579842	iReckon: simultaneous isoform discovery and abundance estimation from RNA-seq data
Q31022008	iSRAP - a one-touch research tool for rapid profiling of small RNA-seq data.
Q88047794	iSeq: Web-Based RNA-seq Data Analysis and Visualization
Q89708799	iSmaRT: a toolkit for a comprehensive analysis of small RNA-Seq data
Q31153177	iSmaRT: a toolkit for a comprehensive analysis of small RNA-Seq data.
Q46368534	iTRAQ and RNA-Seq Analyses Provide New Insights into Regulation Mechanism of Symbiotic Germination of Dendrobium officinale Seeds (Orchidaceae).
Q99346603	iTRAQ and RNA-Seq analyses revealed the effects of grafting on fruit development and ripening of oriental melon (Cucumis melo L. var. makuwa)
Q112729243	intePareto: an R package for integrative analyses of RNA-Seq and ChIP-Seq data
Q35977024	isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation
Q43452069	mRNA enrichment protocols determine the quantification characteristics of external RNA spike-in controls in RNA-Seq studies
Q55191129	miR-MaGiC improves quantification accuracy for small RNA-seq.
Q30831196	miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq data.
Q31023894	miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy
Q35051419	mirCoX: a database of miRNA-mRNA expression correlations derived from RNA-seq meta-analysis
Q90201861	mountainClimber Identifies Alternative Transcription Start and Polyadenylation Sites in RNA-Seq
Q30961945	nagnag: Identification and quantification of NAGNAG alternative splicing using RNA-Seq data
Q112700796	nf-rnaSeqCount: A Nextflow pipeline for obtaining raw read counts from RNA-seq data
Q30661511	omiRas: a Web server for differential expression analysis of miRNAs derived from small RNA-Seq data
Q64965263	pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components.
Q35076237	piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing
Q47264787	piRNA analysis framework from small RNA-Seq data by a novel cluster prediction tool - PILFER.
Q30316862	plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants
Q92899826	qtQDA: quantile transformed quadratic discriminant analysis for high-dimensional RNA-seq data
Q30875027	rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
Q33605544	rQuant.web: a tool for RNA-Seq-based transcript quantitation
Q30698709	rSeqDiff: detecting differential isoform expression from RNA-Seq data using hierarchical likelihood ratio test
Q30900255	rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data
Q41618628	rbamtools: an R interface to samtools enabling fast accumulative tabulation of splicing events over multiple RNA-seq samples
Q42367255	recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor
Q112712768	recount3: summaries and queries for large-scale RNA-seq expression and splicing
Q95659504	rmRNAseq: Differential Expression Analysis for Repeated-measures RNA-seq Data
Q93172811	rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
Q61443865	s ·nr: a visual analytics framework for contextual analyses of private and public RNA-seq data
Q39611396	samExploreR: exploring reproducibility and robustness of RNA-seq results based on SAM files.
Q89693766	scBatch: Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
Q55315697	seq-ImmuCC: Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
Q30558766	shortran: a pipeline for small RNA-seq data analysis
Q38384211	smallWig: parallel compression of RNA-seq WIG files
Q30783186	spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data
Q113307961	strandCheckR: An R package for quantifying and removing double strand sequences for strand-specific RNA-seq
Q112637704	tsRFun: a comprehensive platform for decoding human tsRNA expression, functions and prognostic value by high-throughput small RNA-Seq and CLIP-Seq data
Q33741687	voom: Precision weights unlock linear model analysis tools for RNA-seq read counts
Q42012212	voomDDA: discovery of diagnostic biomarkers and classification of RNA-seq data
Q112831554	“An RNA-seq analysis from non-small cell lung cancer biopsies suggests an important role for aberrant alternative splicing in its pathophysiology”
Q111440176	基于RNA-Seq技术的蜡蚧轮枝菌转录组分析（英文）

P646	Freebase ID	/m/05mrqjm
P486	MeSH descriptor ID	D000081246
P672	MeSH tree code	E05.393.332.250
		E05.393.760.319.500
		E05.393.760.710.500
P2892	UMLS CUI	C4760607

Q105547529	RNA-seq in situ
Q105495662	transcriptome in vivo analysis

Q122830233	cummeRbund
Q122830809	sleuth

Arabic (ar / Q13955)	سلسلة الرنا	wikipedia
en-simple	RNA-Seq	wikipedia

RNA-Seq

high-throughput nucleotide sequencing techniques for RNA

Reverse relations

The articles in Wikimedia projects and languages