Identification of Candidate Anthocyanin-Related Genes by Transcriptomic Analysis of 'Furongli' Plum (Prunus salicina Lindl.) during Fruit Ripening Using RNA-Seq

scientific article published on 31 August 2016

Identification of Candidate Anthocyanin-Related Genes by Transcriptomic Analysis of 'Furongli' Plum (Prunus salicina Lindl.) during Fruit Ripening Using RNA-Seq is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.3389/FPLS.2016.01338
P932PMC publication ID5005409
P698PubMed publication ID27630660

P2093author name stringZhi-Zhen Fang
Shao-Lin Pan
Xin-Fu Ye
Cui-Cui Jiang
Dan-Rong Zhou
P2860cites workLcGST4 is an anthocyanin-related glutathione S-transferase gene in Litchi chinensis SonnQ87036667
Ultrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
Full-length transcriptome assembly from RNA-Seq data without a reference genomeQ24620766
Retrotransposons Control Fruit-Specific, Cold-Dependent Accumulation of Anthocyanins in Blood OrangesQ24633395
Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnologyQ24679382
edgeR: a Bioconductor package for differential expression analysis of digital gene expression dataQ27860819
White grapes arose through the mutation of two similar and adjacent regulatory genesQ28289585
Transcriptome sequencing and expression analysis of terpenoid biosynthesis genes in Litsea cubebaQ28534278
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genomeQ29547458
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics researchQ29547461
WEGO: a web tool for plotting GO annotationsQ29616658
De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identificationQ30830052
Myb-related genes of the Kyoho grape ( Vitis labruscana) regulate anthocyanin biosynthesisQ30857887
DEGseq: an R package for identifying differentially expressed genes from RNA-seq dataQ33512293
An R2R3 MYB transcription factor associated with regulation of the anthocyanin biosynthetic pathway in RosaceaeQ33543418
Differential expression of anthocyanin biosynthetic genes and transcription factor PcMYB10 in pears (Pyrus communis L.).Q34430761
An R2R3 MYB transcription factor determines red petal colour in an Actinidia (kiwifruit) hybrid populationQ34550219
Transcriptional regulation of flavonoid biosynthesis in nectarine (Prunus persica) by a set of R2R3 MYB transcription factorsQ34687159
The bHLH subgroup IIId factors negatively regulate jasmonate-mediated plant defense and development.Q34917068
Transcriptome analysis and transient transformation suggest an ancient duplicated MYB transcription factor as a candidate gene for leaf red coloration in peachQ34997905
Addition of fructooligosaccharides and dried plum to soy-based diets reverses bone loss in the ovariectomized rat.Q35109171
Comparative transcriptome analysis of Anthurium "Albama" and its anthocyanin-loss mutantQ35188693
Transcriptomic analysis of Prunus domestica undergoing hypersensitive response to plum pox virus infectionQ35193953
Methylation affects transposition and splicing of a large CACTA transposon from a MYB transcription factor regulating anthocyanin synthase genes in soybean seed coatsQ35391678
De Novo Transcriptome Analysis to Identify Anthocyanin Biosynthesis Genes Responsible for Tissue-Specific Pigmentation in Zoysiagrass (Zoysia japonica Steud.).Q35532766
Comparative transcriptome analysis of genes involved in anthocyanin biosynthesis in the red and yellow fruits of sweet cherry (Prunus avium L.).Q35584358
Transciptome analysis reveals flavonoid biosynthesis regulation and simple sequence repeats in yam (Dioscorea alata L.) tubersQ35618076
Expression and Anthocyanin Biosynthesis-Modulating Potential of Sweet Cherry (Prunus avium L.) MYB10 and bHLH GenesQ35632985
Comparative Transcriptome Analysis of White and Purple Potato to Identify Genes Involved in Anthocyanin BiosynthesisQ35656902
Transcriptome Profiling of Tomato Fruit Development Reveals Transcription Factors Associated with Ascorbic Acid, Carotenoid and Flavonoid BiosynthesisQ35680493
Constitutive Activation of an Anthocyanin Regulatory Gene PcMYB10.6 Is Related to Red Coloration in Purple-Foliage PlumQ35738764
Gene Expression Profiling of Development and Anthocyanin Accumulation in Kiwifruit (Actinidia chinensis) Based on Transcriptome SequencingQ35753640
Red colouration in apple fruit is due to the activity of the MYB transcription factor, MdMYB10.Q35781740
PyMYB10 and PyMYB10.1 Interact with bHLH to Enhance Anthocyanin Accumulation in PearsQ35832092
The crucial role of PpMYB10.1 in anthocyanin accumulation in peach and relationships between its allelic type and skin color phenotypeQ35845765
Genome-Wide Identification of the Transcription Factors Involved in Citrus Fruit Ripening from the Transcriptomes of a Late-Ripening Sweet Orange Mutant and Its Wild TypeQ35996878
De novo transcriptome assembly of 'Angeleno' and 'Lamoon' Japanese plum cultivars (Prunus salicina)Q36074534
De novo transcriptome assembly of two different Prunus salicina cultivarsQ36333049
Genetics and biochemistry of seed flavonoidsQ36466529
Two LcbHLH Transcription Factors Interacting with LcMYB1 in Regulating Late Structural Genes of Anthocyanin Biosynthesis in Nicotiana and Litchi chinensis During Anthocyanin AccumulationQ36591029
The R2R3 MYB transcription factor PavMYB10.1 involves in anthocyanin biosynthesis and determines fruit skin colour in sweet cherry (Prunus avium L.).Q37394129
Viewpoint: dried plum, an emerging functional food that may effectively improve bone healthQ37411019
Evolutionary and comparative analysis of MYB and bHLH plant transcription factorsQ37858622
Transcriptome analysis of the exocarp of apple fruit identifies light-induced genes involved in red color pigmentationQ38484390
DELLA Proteins Promote Anthocyanin Biosynthesis via Sequestering MYBL2 and JAZ Suppressors of the MYB/bHLH/WD40 Complex in Arabidopsis thalianaQ40015361
Two MYB transcription factors regulate flavonoid biosynthesis in pear fruit (Pyrus bretschneideri Rehd.).Q40189173
The phenylpropanoid pathway is controlled at different branches by a set of R2R3-MYB C2 repressors in grapevine.Q41468277
The MYB182 protein down-regulates proanthocyanidin and anthocyanin biosynthesis in poplar by repressing both structural and regulatory flavonoid genesQ41522028
LcMYB1 is a key determinant of differential anthocyanin accumulation among genotypes, tissues, developmental phases and ABA and light stimuli in Litchi chinensisQ41882906
A role for PacMYBA in ABA-regulated anthocyanin biosynthesis in red-colored sweet cherry cv. Hong Deng (Prunus avium L.).Q42242333
COP1/SPA ubiquitin ligase complexes repress anthocyanin accumulation under low light and high light conditionsQ42285251
An ancient duplication of apple MYB transcription factors is responsible for novel red fruit-flesh phenotypes.Q42674105
A SQUAMOSA MADS box gene involved in the regulation of anthocyanin accumulation in bilberry fruitsQ43010444
Coordinated regulation of anthocyanin biosynthesis in Chinese bayberry (Myrica rubra) fruit by a R2R3 MYB transcription factorQ43150094
Increased accumulation of anthocyanins in Fragaria chiloensis fruits by transient suppression of FcMYB1 gene.Q44593060
A MYB transcription factor regulates anthocyanin biosynthesis in mangosteen (Garcinia mangostana L.) fruit during ripeningQ46078790
A negative MYB regulator of proanthocyanidin accumulation, identified through expression quantitative locus mapping in the grape berry.Q46162402
AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin biosynthesis in ArabidopsisQ46557398
Biosynthesis of plant pigments: anthocyanins, betalains and carotenoidsQ46598400
Identification of a PTC-containing DlRan transcript and its differential expression during somatic embryogenesis in Dimocarpus longanQ46732968
Expression differences of anthocyanin biosynthesis genes reveal regulation patterns for red pear coloration.Q46824468
Regulation of anthocyanin and proanthocyanidin biosynthesis by Medicago truncatula bHLH transcription factor MtTT8.Q47889350
An R2R3-MYB transcription factor as a negative regulator of the flavonoid biosynthesis pathway in Ginkgo bilobaQ48033934
The Methylation of the PcMYB10 Promoter Is Associated with Green-Skinned Sport in Max Red Bartlett PearQ48039612
CPC, a single-repeat R3 MYB, is a negative regulator of anthocyanin biosynthesis in ArabidopsisQ48067529
Light-induced expression of a MYB gene regulates anthocyanin biosynthesis in red apples.Q48084399
The Transcriptional Repressor MYB2 Regulates Both Spatial and Temporal Patterns of Proanthocyandin and Anthocyanin Pigmentation in Medicago truncatulaQ48128115
New member of the R2R3-MYB transcription factors family in grapevine suppresses the anthocyanin accumulation in the flowers of transgenic tobaccoQ50280391
Molecular genetics of blood-fleshed peach reveals activation of anthocyanin biosynthesis by NAC transcription factors.Q50451618
Effect of calcium on strawberry fruit flavonoid pathway gene expression and anthocyanin accumulationQ50452861
Phenylpropanoid metabolites and expression of key genes involved in anthocyanin biosynthesis in the shaded peel of apple fruit in response to sun exposureQ50479686
Expression and functional analysis of a novel MYB gene, MdMYB110a_JP, responsible for red flesh, not skin color in apple fruitQ50492598
MdCOP1 Ubiquitin E3 Ligases Interact with MdMYB1 to Regulate Light-Induced Anthocyanin Biosynthesis and Red Fruit Coloration in AppleQ50505872
High temperature reduces apple fruit colour via modulation of the anthocyanin regulatory complexQ50542361
Arabidopsis NAC transcription factor, ANAC078, regulates flavonoid biosynthesis under high-light.Q50578681
PIF3 regulates anthocyanin biosynthesis in an HY5-dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in ArabidopsisQ50704106
The Jasmonate-ZIM-domain proteins interact with the WD-Repeat/bHLH/MYB complexes to regulate Jasmonate-mediated anthocyanin accumulation and trichome initiation in Arabidopsis thalianaQ51868190
Plum juice, but not dried plum powder, is effective in mitigating cognitive deficits in aged ratsQ51944266
MYBL2 is a new regulator of flavonoid biosynthesis in Arabidopsis thalianaQ51955645
Isolation and characterization of four ethylene signal transduction elements in plums (Prunus salicina L.).Q51970602
Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlingsQ51971441
Immunostimulatory effects of oriental plum (Prunus salicina Lindl.).Q53549846
Regulation of anthocyanin biosynthesis in peach fruits.Q54208751
Negative regulation of anthocyanin biosynthesis in Arabidopsis by a miR156-targeted SPL transcription factorQ54244074
Effects of alginate edible coating on preserving fruit quality in four plum cultivars during postharvest storageQ58738750
Analysis of interactions between heterologously produced bHLH and MYB proteins that regulate anthocyanin biosynthesis: Quantitative interaction kinetics by Microscale ThermophoresisQ59275571
Light and the E3 ubiquitin ligase COP1/SPA control the protein stability of the MYB transcription factors PAP1 and PAP2 involved in anthocyanin accumulation in ArabidopsisQ61518250
Detection of adulteration in blackberry juice concentrates and winesQ70603033
Retrotransposon-induced mutations in grape skin colorQ80088027
Anthocyanin, antioxidant activity and stress-induced gene expression in high CO2-treated table grapes stored at low temperatureQ80481502
Short cold storage enhances the anthocyanin contents and level of transcripts related to their biosynthesis in blood orangesQ82842832
The bHLH transcription factor MdbHLH3 promotes anthocyanin accumulation and fruit colouration in response to low temperature in applesQ83943147
MdMYB9 and MdMYB11 are involved in the regulation of the JA-induced biosynthesis of anthocyanin and proanthocyanidin in applesQ86361269
MYBD employed by HY5 increases anthocyanin accumulation via repression of MYBL2 in ArabidopsisQ86714127
P4510describes a project that usesedgeRQ113334690
RNA-SeqQ68168612
P921main subjectRNA analysisQ95588220
transcriptomeQ252857
anthocyaninsQ262547
Prunus salicinaQ1250033
RNA sequencingQ2542347
RNA-SeqQ68168612
P304page(s)1338
P577publication date2016-08-31
P1433published inFrontiers in Plant ScienceQ27723840
P1476titleIdentification of Candidate Anthocyanin-Related Genes by Transcriptomic Analysis of 'Furongli' Plum (Prunus salicina Lindl.) during Fruit Ripening Using RNA-Seq
P478volume7

Reverse relations

cites work (P2860)
Q99711588Analysis of Metabolites and Gene Expression Changes Relative to Apricot (Prunus armeniaca L.) Fruit Quality During Development and Ripening
Q60907927New insights in the control of antioxidants accumulation in tomato by transcriptomic analyses of genotypes exhibiting contrasting levels of fruit metabolites
Q38616419Transcriptional profiling of catechins biosynthesis genes during tea plant leaf development.
Q89763254Transcriptional reprogramming strategies and miRNA-mediated regulation networks of Taxus media induced into callus cells from tissues
Q89761681Transcriptomic Analysis of Ficus carica Peels with a Focus on the Key Genes for Anthocyanin Biosynthesis
Q60305853Transcriptomic analysis of Lycium ruthenicum Murr. during fruit ripening provides insight into structural and regulatory genes in the anthocyanin biosynthetic pathway
Q64072377genetics and applications after de novo genome sequencing: achievements and prospects

Search more.