VCNet: Vector based gene Co-expression Network construction and its application to RNA-seq data

scientific article

VCNet: Vector based gene Co-expression Network construction and its application to RNA-seq data is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bioinformatics/WangFTD17
P356DOI10.1093/BIOINFORMATICS/BTX131
P698PubMed publication ID28334366

P50authorNelson TangQ37839560
P2093author name stringMinghua Deng
Huaying Fang
Zengmiao Wang
P2860cites workExpression and characterization of hypoxia-inducible factor (HIF)-3alpha in human kidney: suppression of HIF-mediated gene expression by HIF-3alphaQ24291726
Molecular mechanisms of transcription activation by HLF and HIF1alpha in response to hypoxia: their stabilization and redox signal-induced interaction with CBP/p300.Q24534053
The Reactome pathway knowledgebaseQ24567743
RNA-Seq: a revolutionary tool for transcriptomicsQ24596169
Histone acetylation in chromatin structure and transcriptionQ28131749
Levels of hypoxia-inducible factor-1alpha independently predict prognosis in patients with lymph node negative breast carcinomaQ28181979
Gene Dosage–Dependent Embryonic Development and Proliferation Defects in Mice Lacking the Transcriptional Integrator p300Q28270979
The human hypoxia-inducible factor 1alpha gene: HIF1A structure and evolutionary conservationQ28286124
Prediction of drug-target interactions and drug repositioning via network-based inferenceQ28483634
The transcriptional co-activators CREB-binding protein (CBP) and p300 play a critical role in cardiac hypertrophy that is dependent on their histone acetyltransferase activityQ28583478
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencingQ29547470
Analysis of variance for gene expression microarray dataQ29618940
Network deconvolution as a general method to distinguish direct dependencies in networksQ30352074
DDGni: dynamic delay gene-network inference from high-temporal data using gapped local alignment.Q30703235
SpliceNet: recovering splicing isoform-specific differential gene networks from RNA-Seq data of normal and diseased samplesQ30837003
A human functional protein interaction network and its application to cancer data analysisQ33581341
RNA-seq: from technology to biologyQ33604404
Renal cancer: oxygen meets metabolismQ35907065
Annotating cancer variants and anti-cancer therapeutics in reactomeQ37017116
Statistical inferences for isoform expression in RNA-SeqQ37153258
PennSeq: accurate isoform-specific gene expression quantification in RNA-Seq by modeling non-uniform read distributionQ37574150
CUL2 is required for the activity of hypoxia-inducible factor and vasculogenesisQ38868654
Conjunction dysfunction: CBP/p300 in human disease.Q48013074
P407language of work or nameEnglishQ1860
P921main subjectRNA sequencingQ2542347
RNA-SeqQ68168612
P577publication date2017-03-08
P1433published inBioinformaticsQ4914910
P1476titleVCNet: Vector based gene Co-expression Network construction and its application to RNA-seq data

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cites work (P2860)
Q96351611A network-based computational framework to predict and differentiate functions for gene isoforms using exon-level expression data
Q50099223NetMiner-an ensemble pipeline for building genome-wide and high-quality gene co-expression network using massive-scale RNA-seq samples.

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