| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/jcb/KerrMC00 |
| P356 | DOI | 10.1089/10665270050514954 |
| P3181 | OpenCitations bibliographic resource ID | 1162396 |
| P698 | PubMed publication ID | 11382364 |
| P5875 | ResearchGate publication ID | 11957341 |
| P2093 | author name string | Martin M | |
| Churchill GA | |||
| Kerr MK | |||
| P433 | issue | 6 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 819-37 | |
| P577 | publication date | 2000-01-01 | |
| P1433 | published in | Journal of Computational Biology | Q6295003 |
| P1476 | title | Analysis of variance for gene expression microarray data | |
| P478 | volume | 7 |
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| Q33257297 | A biological question and a balanced (orthogonal) design: the ingredients to efficiently analyze two-color microarrays with Confirmatory Factor Analysis |
| Q83179832 | A cDNA microarray approach to decipher sunflower (Helianthus annuus) responses to the necrotrophic fungus Phoma macdonaldii |
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| Q30969023 | A dynamic, web-accessible resource to process raw microarray scan data into consolidated gene expression values: importance of replication |
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| Q34303157 | A framework to identify gene expression profiles in a model of inflammation induced by lipopolysaccharide after treatment with thalidomide |
| Q30968453 | A generalized additive model for microarray gene expression data analysis. |
| Q24814641 | A generally applicable validation scheme for the assessment of factors involved in reproducibility and quality of DNA-microarray data |
| Q40884777 | A high productivity/low maintenance approach to high-performance computation for biomedicine: four case studies |
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| Q39809003 | A model-based analysis of microarray experimental error and normalisation |
| Q33492779 | A new class of mixture models for differential gene expression in DNA microarray data |
| Q24803818 | A new non-linear normalization method for reducing variability in DNA microarray experiments |
| Q52001471 | A new paradigm for profiling testicular gene expression during normal and disturbed human spermatogenesis |
| Q38363333 | A novel mechanism for the regulation of osteoblast differentiation: transcription of periostin, a member of the fasciclin I family, is regulated by the bHLH transcription factor, twist. |
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| Q33504541 | A statistical model to identify differentially expressed proteins in 2D PAGE gels |
| Q47737395 | A stochastic model for optimizing composite predictors based on gene expression profiles |
| Q34640913 | A strategy for identifying osteoporosis risk genes |
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| Q52051008 | A tiling microarray expression analysis of rice chromosome 4 suggests a chromosome-level regulation of transcription |
| Q31003896 | A two-stage normalization method for partially degraded mRNA microarray data. |
| Q30981916 | A two-step strategy for detecting differential gene expression in cDNA microarray data |
| Q31160471 | A weighted average difference method for detecting differentially expressed genes from microarray data |
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| Q80375303 | Altered vegetable intake affects pivotal carcinogenesis pathways in colon mucosa from adenoma patients and controls |
| Q38607678 | An Improved Analysis Methodology for Translational Profiling by Microarray. |
| Q34332993 | An Integrated Statistical Approach to Compare Transcriptomics Data Across Experiments: A Case Study on the Identification of Candidate Target Genes of the Transcription Factor PPARα |
| Q42948950 | An agr-like two-component regulatory system in Lactobacillus plantarum is involved in production of a novel cyclic peptide and regulation of adherence |
| Q30477677 | An assessment of recently published gene expression data analyses: reporting experimental design and statistical factors |
| Q34539882 | An excess of gene expression divergence on the X chromosome in Drosophila embryos: implications for the faster-X hypothesis |
| Q40514819 | An experimental evaluation of a loop versus a reference design for two-channel microarrays |
| Q34109975 | An expression-driven approach to the prediction of carbohydrate transport and utilization regulons in the hyperthermophilic bacterium Thermotoga maritima |
| Q30657263 | An integrated hierarchical Bayesian approach to normalizing left-censored microRNA microarray data |
| Q24814337 | Analysis of a splice array experiment elucidates roles of chromatin elongation factor Spt4-5 in splicing |
| Q30755496 | Analysis of gene expression data using a linear mixed model/finite mixture model approach: application to regional differences in the human brain |
| Q24805862 | Analysis of host response to bacterial infection using error model based gene expression microarray experiments. |
| Q36731621 | Analysis of microarray experiments of gene expression profiling. |
| Q24803967 | Analysis of oligonucleotide array experiments with repeated measures using mixed models |
| Q24805884 | Analysis of strain and regional variation in gene expression in mouse brain |
| Q31057665 | Analysis of variance of microarray data |
| Q33410446 | Analyzing microarray data with transitive directed acyclic graphs |
| Q24813025 | AnovArray: a set of SAS macros for the analysis of variance of gene expression data |
| Q33513312 | Anti-proliferative action of vitamin D in MCF7 is still active after siRNA-VDR knock-down |
| Q46497350 | Antibiotic overproduction in Streptomyces coelicolor A3 2 mediated by phosphofructokinase deletion |
| Q37475770 | Application of One Sided t-tests and a Generalized Experiment Wise Error Rate to High-Density Oligonucleotide Microarray Experiments: An Example Using Arabidopsis |
| Q36766211 | Application of a fuzzy neural network model in predicting polycyclic aromatic hydrocarbon-mediated perturbations of the Cyp1b1 transcriptional regulatory network in mouse skin |
| Q35544065 | Application of functional genomics in allergy and clinical immunology. |
| Q33330475 | Application of microarray outlier detection methodology to psychiatric research |
| Q36392371 | Application of microarray technology in primate behavioral neuroscience research |
| Q30939430 | Application of toxicogenomics to toxicology: basic concepts in the analysis of microarray data |
| Q44331899 | Arabidopsis gene expression changes during cyst nematode parasitism revealed by statistical analyses of microarray expression profiles |
| Q73598816 | Array rank order regression analysis for the detection of gene copy-number changes in human cancer |
| Q34272093 | Array-based gene expression profiling to study aging |
| Q36411672 | Array-based methods for diagnosis and prevention of transplant rejection |
| Q31163568 | Assessing probe-specific dye and slide biases in two-color microarray data |
| Q36314706 | Associating phenotypes with molecular events: recent statistical advances and challenges underpinning microarray experiments |
| Q33374141 | BATS: a Bayesian user-friendly software for analyzing time series microarray experiments |
| Q37355415 | Balancing false positives and false negatives for the detection of differential expression in malignancies. |
| Q24803156 | Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments |
| Q36539404 | Bayesian mixture model analysis for detecting differentially expressed genes |
| Q38518803 | Bayesian modeling of differential gene expression |
| Q37210026 | Bench-to-bedside review: Association of genetic variation with sepsis |
| Q34328172 | Berry flesh and skin ripening features in Vitis vinifera as assessed by transcriptional profiling. |
| Q92717121 | Big data differential analysis of microglial cell responses in neurodegenerative diseases |
| Q33531526 | Bimodal gene expression patterns in breast cancer |
| Q31157927 | Bioinformatic tools for inferring functional information from plant microarray data: tools for the first steps |
| Q34433946 | Biological impact of missing-value imputation on downstream analyses of gene expression profiles |
| Q28473839 | Birdsong "transcriptomics": neurochemical specializations of the oscine song system |
| Q33929252 | Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments |
| Q39336674 | Borrowing strength: a likelihood ratio test for related sparse signals. |
| Q34466511 | Brain microarray: finding needles in molecular haystacks. |
| Q30477210 | CARMA: A platform for analyzing microarray datasets that incorporate replicate measures |
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| Q34380241 | Characterization of heterogeneity in the molecular pathogenesis of lupus nephritis from transcriptional profiles of laser-captured glomeruli |
| Q31003373 | Clustering gene expression data based on predicted differential effects of GV interaction. |
| Q41929562 | Co-ordination and divergence of cell-specific transcription and translation of genes in arabidopsis root cells |
| Q35894036 | Combining genome-wide and targeted gene expression profiling in drug discovery: microarrays and real-time PCR. |
| Q33403665 | Comparative transcriptomic analysis of Porphyromonas gingivalis biofilm and planktonic cells |
| Q57441958 | Comparative transcriptomic analysis of symbiotic Bradyrhizobium japonicum |
| Q36640536 | Comparison of Gene Expression Profiles between Keratinocytes, Melanocytes and Fibroblasts |
| Q36405345 | Comparison of regional gene expression differences in the brains of the domestic dog and human |
| Q44386499 | Computational selection of distinct class- and subclass-specific gene expression signatures. |
| Q30950304 | Computational strategies for analyzing data in gene expression microarray experiments |
| Q35898823 | Confounding Factors in the Transcriptome Analysis of an In-Vivo Exposure Experiment |
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| Q36120284 | DNA microarrays--techniques and applications in microbial systems. |
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| Q33567600 | Developmental stage and level of codon usage bias in Drosophila |
| Q36604858 | Diet-induced obesity reprograms the inflammatory response of the murine lung to inhaled endotoxin |
| Q30989514 | Differential and trajectory methods for time course gene expression data |
| Q60393907 | Differential expression of genes important for adaptation in Capsella bursa-pastoris (Brassicaceae) |
| Q39609425 | Differential gene expression of wheat progeny with contrasting levels of transpiration efficiency. |
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| Q35780673 | Differential timing of gene expression regulation between leptocephali of the two Anguilla eel species in the Sargasso Sea. |
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| Q37057986 | Effects of prenatal tobacco exposure on gene expression profiling in umbilical cord tissue. |
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| Q35362212 | Exploiting identifiability and intergene correlation for improved detection of differential expression |
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| Q36861681 | Factorial microarray analysis of zebrafish retinal development. |
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| Q48652472 | Food Deprivation-induced Expression of Minoxidil Sulfotransferase in the Hypothalamus Uncovered by Microarray Analysis |
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| Q48138517 | Gene expression changes in mouse brain after exposure to low-dose ionizing radiation. |
| Q28300651 | Gene expression divergence recapitulates the developmental hourglass model |
| Q34088503 | Gene expression following acute morphine administration |
| Q39969375 | Gene expression profiles of necrosis and apoptosis induced by 5-fluoro-2'-deoxyuridine |
| Q30887318 | Gene expression profiling in islet biology and diabetes research |
| Q33246682 | Gene expression profiling in the striatum of inbred mouse strains with distinct opioid-related phenotypes |
| Q41195455 | Gene expression profiling of calcifications in breast cancer |
| Q40605721 | Gene expression profiling of the hypoxia signaling pathway in hypoxia-inducible factor 1alpha null mouse embryonic fibroblasts |
| Q34476974 | Gene expression profiling. Methods and clinical applications in oncology |
| Q35035871 | Gene expression profiling: methodological challenges, results, and prospects for addiction research |
| Q36088501 | Gene expression signatures in neutrophils exposed to glucocorticoids: a new paradigm to help explain "neutrophil dysfunction" in parturient dairy cows |
| Q24806230 | Gene expression variation between mouse inbred strains |
| Q44602945 | Gene expression variation in the adult human retina |
| Q33948792 | Gene set analysis for longitudinal gene expression data |
| Q40484478 | Gene set differential analysis of time course expression profiles via sparse estimation in functional logistic model with application to time-dependent biomarker detection |
| Q36956231 | Gene-environment interactions reveal a homeostatic role for cholesterol metabolism during dietary folate perturbation in mice |
| Q40585055 | Gene-specific dye bias in microarray reference designs |
| Q35566107 | Generalized shrinkage F-like statistics for testing an interaction term in gene expression analysis in the presence of heteroscedasticity. |
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| Q56985105 | Genetic constraints on microevolutionary divergence of sex-biased gene expression |
| Q24815740 | Genetic interactions due to constitutive and inducible gene regulation mediated by the unfolded protein response in C. elegans. |
| Q30730498 | Genome scale transcriptional response diversity among ten ecotypes of Arabidopsis thaliana during heat stress |
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| Q35023929 | Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes |
| Q24814852 | Genome-wide estimation of transcript concentrations from spotted cDNA microarray data |
| Q33638451 | Genome-wide expression profiling deciphers host responses altered during dengue shock syndrome and reveals the role of innate immunity in severe dengue |
| Q35080749 | Genome-wide transcriptional and physiological responses of Bradyrhizobium japonicum to paraquat-mediated oxidative stress |
| Q36083218 | Genomewide identification of genes under directional selection: gene transcription Q(ST) scan in diverging Atlantic salmon subpopulations |
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| Q35791563 | Genomic portraits of the nervous system in health and disease |
| Q34261993 | Genomic scale analysis of Pasteurella multocida gene expression during growth within the natural chicken host |
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| Q34052927 | Genotyping Cryptosporidium parvum with an hsp70 single-nucleotide polymorphism microarray |
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| Q51112512 | Global monitoring of autumn gene expression within and among phenotypically divergent populations of Sitka spruce (Picea sitchensis). |
| Q33220010 | Global transcriptional characterization of SP and MP cells from the myogenic C2C12 cell line: effect of FGF6. |
| Q33304230 | Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium |
| Q28485327 | Global transcriptome profile of Cryptococcus neoformans during exposure to hydrogen peroxide induced oxidative stress |
| Q48374572 | GlobalANCOVA: exploration and assessment of gene group effects |
| Q33509210 | Graph ranking for exploratory gene data analysis |
| Q34634007 | Heterogeneity of gene expression in murine squamous cell carcinoma development-the same tumor by different means |
| Q33352095 | Heterologous array analysis in Pinaceae: hybridization of Pinus taeda cDNA arrays with cDNA from needles and embryogenic cultures of P. Taeda, P. Sylvestris or Picea abies |
| Q40273074 | Heterosis associated gene expression in maize embryos 6 days after fertilization exhibits additive, dominant and overdominant pattern |
| Q33924894 | High-fat diet leads to tissue-specific changes reflecting risk factors for diseases in DBA/2J mice |
| Q31113885 | High-sensitivity transcriptome data structure and implications for analysis and biologic interpretation |
| Q39888169 | Hits and misses from gene expression ratio measurements in cDNA microarray studies |
| Q51973229 | Hotelling's T2 multivariate profiling for detecting differential expression in microarrays |
| Q24793798 | How many replicates of arrays are required to detect gene expression changes in microarray experiments? A mixture model approach |
| Q24810894 | Hyperspectral microarray scanning: impact on the accuracy and reliability of gene expression data |
| Q33373537 | ILOOP--a web application for two-channel microarray interwoven loop design |
| Q36919978 | Identification of diagnostic biomarkers for infection in premature neonates |
| Q51595301 | Identification of differentially expressed genes with multivariate outlier analysis |
| Q31144267 | Identification of genes differentially expressed during aflatoxin biosynthesis in Aspergillus flavus and Aspergillus parasiticus |
| Q30697080 | Identification of significant features in DNA microarray data |
| Q34118210 | Identification of the role of C/EBP in neurite regeneration following microarray analysis of a L. stagnalis CNS injury model |
| Q48515923 | Identifying differentially expressed genes from microarray experiments via statistic synthesis. |
| Q46199089 | Identifying differentially expressed genes in human acute leukemia and mouse brain microarray datasets utilizing QTModel |
| Q30985619 | Immune response in silico (IRIS): immune-specific genes identified from a compendium of microarray expression data. |
| Q33411997 | Impact of breed and sex on porcine endocrine transcriptome: a bayesian biometrical analysis |
| Q33540143 | Impact of missing value imputation on classification for DNA microarray gene expression data--a model-based study |
| Q34523438 | Impaired transcriptional response of the murine heart to cigarette smoke in the setting of high fat diet and obesity |
| Q51853759 | Improved detection of differentially expressed genes through incorporation of gene locations |
| Q24815238 | Improved statistical analysis of budding yeast TAG microarrays revealed by defined spike-in pools |
| Q24801758 | Improving identification of differentially expressed genes in microarray studies using information from public databases |
| Q36481145 | Improving reliability and performance of DNA microarrays |
| Q30863948 | Improving the accuracy of expression data analysis in time course experiments using resampling |
| Q24792834 | Improving the statistical detection of regulated genes from microarray data using intensity-based variance estimation |
| Q38316019 | In Planta Analysis of a cis-Regulatory Cytokinin Response Motif in Arabidopsis and Identification of a Novel Enhancer Sequence |
| Q37190713 | In vivo and in vitro patterns of the activity of simocyclinone D8, an angucyclinone antibiotic from Streptomyces antibioticus |
| Q24798953 | Incorporation of gene-specific variability improves expression analysis using high-density DNA microarrays |
| Q30770610 | Increasing the efficiency of fuzzy logic-based gene expression data analysis |
| Q34006510 | Independent filtering increases detection power for high-throughput experiments |
| Q80117124 | Induction of isoforms of tetrapyrrole biosynthetic enzymes, AtHEMA2 and AtFC1, under stress conditions and their physiological functions in Arabidopsis |
| Q34650169 | Induction of olfaction and cancer-related genes in mice fed a high-fat diet as assessed through the mode-of-action by network identification analysis |
| Q30651603 | Infection status outcome, machine learning method and virus type interact to affect the optimised prediction of hepatitis virus immunoassay results from routine pathology laboratory assays in unbalanced data |
| Q33597322 | Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM. |
| Q36049303 | Inferring the perturbation time from biological time course data. |
| Q34046445 | Integrated analysis of the heterogeneous microarray data |
| Q37383916 | Integration of genetic and genomic methods for identification of genes and gene variants encoding QTLs in the nonhuman primate |
| Q38344423 | Intensity-based analysis of two-colour microarrays enables efficient and flexible hybridization designs. |
| Q28475985 | Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production |
| Q39094360 | Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects |
| Q48444711 | John Storey by Mak H Craig |
| Q28299740 | Key aspects of analyzing microarray gene-expression data |
| Q33748676 | LC-MS Data Analysis for Differential Protein Expression Detection |
| Q40380499 | Laboratory variability does not preclude identification of biological functions impacted by hydroxyurea |
| Q24816358 | Limitations of mRNA amplification from small-size cell samples |
| Q33327771 | Limited functional conservation of a global regulator among related bacterial genera: Lrp in Escherichia, Proteus and Vibrio |
| Q30740505 | Local adaptation at the transcriptome level in brown trout: evidence from early life history temperature genomic reaction norms |
| Q24812691 | MASQOT: a method for cDNA microarray spot quality control |
| Q37091537 | Macrophage responses to silica nanoparticles are highly conserved across particle sizes |
| Q34514417 | Mapping and analysis of quantitative trait loci in experimental populations |
| Q33336258 | Mapping gene expression quantitative trait loci by singular value decomposition and independent component analysis |
| Q46134350 | Mass mortality in Pacific oysters is associated with a specific gene expression signature |
| Q28648070 | Mechanism-Based Classification of PAH Mixtures to Predict Carcinogenic Potential |
| Q33466039 | Meta Analysis of Gene Expression Data within and Across Species |
| Q36156264 | Metabolic engineering in the -omics era: elucidating and modulating regulatory networks |
| Q42055175 | Metatranscriptome analysis for insight into whole-ecosystem gene expression during spontaneous wheat and spelt sourdough fermentations |
| Q31033299 | Methodological study of affine transformations of gene expression data with proposed robust non-parametric multi-dimensional normalization method |
| Q35790165 | Methods for transcriptional profiling in plants. Be fruitful and replicate |
| Q35182905 | MicroRNA array normalization: an evaluation using a randomized dataset as the benchmark |
| Q30512450 | MicroRNAs control neurobehavioral development and function in zebrafish |
| Q33902408 | Microarray Data Analysis and Mining Tools |
| Q33855706 | Microarray analysis and motif detection reveal new targets of the Salmonella enterica serovar Typhimurium HilA regulatory protein, including hilA itself. |
| Q30675927 | Microarray data quality analysis: lessons from the AFGC project. Arabidopsis Functional Genomics Consortium. |
| Q31153289 | Microarray data visualization and analysis with the Longhorn Array Database (LAD). |
| Q47440182 | Microarray experimental design: power and sample size considerations |
| Q35913288 | Microarray platforms: introduction and application to neurobiology |
| Q36580883 | Microarray quality control |
| Q36338671 | Microarray technology in the study of obesity and non-alcoholic fatty liver disease |
| Q34570921 | Microarrays in ecology and evolution: a preview |
| Q30662459 | Microarrays: handling the deluge of data and extracting reliable information |
| Q34501860 | Midkine, a heparin-binding protein, is increased in the diabetic mouse kidney postmenopause. |
| Q33771648 | Missing value imputation for gene expression data: computational techniques to recover missing data from available information. |
| Q33194151 | Mixed-Model Reanalysis of Primate Data Suggests Tissue and Species Biases in Oligonucleotide-Based Gene Expression Profiles |
| Q24797712 | Model selection and efficiency testing for normalization of cDNA microarray data |
| Q44769743 | Model selection in a global analysis of a microarray experiment. |
| Q51915565 | Model-based or algorithm-based? Statistical evidence for diabetes and treatments using gene expression |
| Q30936785 | Modeling microarray data using a threshold mixture model |
| Q30708253 | Models for microarray gene expression data. |
| Q40200166 | Molecular portrait of high productivity in recombinant NS0 cells |
| Q34481070 | Molecular processes during fat cell development revealed by gene expression profiling and functional annotation |
| Q24793372 | Multi-class cancer classification by total principal component regression (TPCR) using microarray gene expression data |
| Q24805395 | Multifactorial experimental design and the transitivity of ratios with spotted DNA microarrays |
| Q52045598 | Multivariate approach for selecting sets of differentially expressed genes |
| Q35220629 | Mycobacterium tuberculosis SigM positively regulates Esx secreted protein and nonribosomal peptide synthetase genes and down regulates virulence-associated surface lipid synthesis |
| Q34914017 | Network-based biomarkers enhance classical approaches to prognostic gene expression signatures. |
| Q28397059 | Network-based identification of biomarkers coexpressed with multiple pathways |
| Q35125807 | New genes that extend Caenorhabditis elegans’ lifespan in response to reproductive signals |
| Q31122605 | New insights into ADPKD molecular pathways using combination of SAGE and microarray technologies |
| Q24811281 | Nonparametric tests for differential gene expression and interaction effects in multi-factorial microarray experiments |
| Q31114197 | Normalisation of multicondition cDNA macroarray data |
| Q34446542 | Normalization and Statistical Analysis of Multiplexed Bead-based Immunoassay Data Using Mixed-effects Modeling |
| Q36016824 | Normalization and analysis of cDNA microarrays using within-array replications applied to neuroblastoma cell response to a cytokine. |
| Q27860759 | Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation |
| Q30776767 | Normalization methods for analysis of microarray gene-expression data |
| Q47366247 | Normalization of mass spectrometry data (NOMAD). |
| Q37364191 | Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition |
| Q45129916 | Normalization of two-channel microarray experiments: a semiparametric approach. |
| Q42791026 | Normalization of two-channel microarrays accounting for experimental design and intensity-dependent relationships |
| Q37318160 | Normalization using weighted negative second order exponential error functions (NeONORM) provides robustness against asymmetries in comparative transcriptome profiles and avoids false calls |
| Q34049214 | Normalization, testing, and false discovery rate estimation for RNA-sequencing data |
| Q33260933 | Novel design and controls for focused DNA microarrays: applications in quality assurance/control and normalization for the Health Canada ToxArray |
| Q52029882 | Of meis and men: lessons from a microarray study of teratogen action |
| Q38357954 | Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment. |
| Q41962000 | On correcting the overestimation of the permutation-based false discovery rate estimator |
| Q51616661 | On the A-Optimality Criterion for Finding Two-Color Microarray Optimal Designs |
| Q33927708 | On the utility of pooling biological samples in microarray experiments |
| Q25257524 | OpWise: operons aid the identification of differentially expressed genes in bacterial microarray experiments |
| Q40844114 | Operon structure of Staphylococcus aureus |
| Q38656962 | Optimality criteria for the design of 2-color microarray studies |
| Q30727982 | Optimization of high-density cDNA-microarray protocols by 'design of experiments'. |
| Q24791194 | Optimized LOWESS normalization parameter selection for DNA microarray data |
| Q49849747 | Optimized Phenotypic Biomarker Discovery and Confounder Elimination via Covariate-Adjusted Projection to Latent Structures from Metabolic Spectroscopy Data |
| Q36079565 | Optimizing spotting solutions for increased reproducibility of cDNA microarrays |
| Q30479714 | Orthogonal projections to latent structures as a strategy for microarray data normalization |
| Q33331041 | Overexpression of Scg5 increases enzymatic activity of PCSK2 and is inversely correlated with body weight in congenic mice |
| Q41130183 | PCDH24-induced contact inhibition involves downregulation of beta-catenin signaling |
| Q37349947 | PPARgamma2 nuclear receptor controls multiple regulatory pathways of osteoblast differentiation from marrow mesenchymal stem cells |
| Q28255878 | Pathways to the analysis of microarray data |
| Q24793935 | Permutation-validated principal components analysis of microarray data |
| Q36837010 | Pervasive sex-linked effects on transcription regulation as revealed by expression quantitative trait loci mapping in lake whitefish species pairs (Coregonus sp., Salmonidae) |
| Q28591047 | Pla2g12b and Hpn Are Genes Identified by Mouse ENU Mutagenesis That Affect HDL Cholesterol |
| Q33908405 | Platelets alter gene expression profile in human brain endothelial cells in an in vitro model of cerebral malaria |
| Q34165462 | Polyamine pathway contributes to the pathogenesis of Parkinson disease |
| Q52717533 | Population transcriptomics: insights from Drosophila simulans, Drosophila sechellia and their hybrids. |
| Q31117853 | Post hoc pattern matching: assigning significance to statistically defined expression patterns in single channel microarray data |
| Q34129389 | Postmortem cardiac tissue maintains gene expression profile even after late harvesting. |
| Q46819525 | Primary metabolic pathways and signal transduction in sunflower (Helianthus annuus L.): comparison of transcriptional profiling in leaves and immature embryos using cDNA microarrays |
| Q52667588 | Primate fetal hepatic responses to maternal obesity: epigenetic signalling pathways and lipid accumulation. |
| Q31077864 | ProCAT: a data analysis approach for protein microarrays |
| Q24804966 | Probabilistic estimation of microarray data reliability and underlying gene expression |
| Q33255379 | Probe-level linear model fitting and mixture modeling results in high accuracy detection of differential gene expression |
| Q24813217 | Progress in the application of DNA microarrays |
| Q30436991 | Proteomic analysis of pollination-induced corolla senescence in petunia |
| Q35234645 | Quantitative analysis of mammalian translation initiation sites by FACS-seq |
| Q47844541 | Quantitative assessment of the importance of dye switching and biological replication in cDNA microarray studies |
| Q48733771 | Quantitative estimation of activity and quality for collections of functional genetic elements |
| Q81298718 | RNA interference identifies a calcium-dependent protein kinase involved in Medicago truncatula root development |
| Q34478275 | RNA-seq and microarray complement each other in transcriptome profiling. |
| Q57314360 | Randomization tests for small samples: an application for genetic expression data |
| Q31148989 | Ranking analysis of F-statistics for microarray data |
| Q31061235 | Ranking analysis of microarray data: a powerful method for identifying differentially expressed genes |
| Q37217305 | Reassessing design and analysis of two-colour microarray experiments using mixed effects models |
| Q30957841 | Reconstructing genetic networks from time ordered gene expression data using Bayesian method with global search algorithm |
| Q37270376 | Reducing the complexity of complex gene coexpression networks by coupling multiweighted labeling with topological analysis |
| Q42164758 | Regulatory features underlying pollination-dependent and -independent tomato fruit set revealed by transcript and primary metabolite profiling |
| Q24289394 | Reliability and reproducibility issues in DNA microarray measurements |
| Q45126779 | Renal medullary gene expression in aquaporin-1 null mice |
| Q34110864 | Repeated small perturbation approach reveals transcriptomic steady states |
| Q79423598 | Reproducibility Probability Score--incorporating measurement variability across laboratories for gene selection |
| Q24806390 | Reproducibility of gene expression across generations of Affymetrix microarrays |
| Q24806473 | Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays |
| Q38352100 | Responses of microRNAs 124a and 223 following spinal cord injury in mice |
| Q41885111 | Rhesus cytomegalovirus particles prevent activation of interferon regulatory factor 3. |
| Q61649403 | Robust ANOVA for microarray data |
| Q41341252 | Robust Significance Analysis of Microarrays by Minimum β-Divergence Method. |
| Q34733167 | Role of gene expression microarray analysis in finding complex disease genes. |
| Q30854403 | Rotation gene set testing for longitudinal expression data. |
| Q31036624 | SIMAGE: simulation of DNA-microarray gene expression data |
| Q33372132 | SLEPR: a sample-level enrichment-based pathway ranking method -- seeking biological themes through pathway-level consistency |
| Q48260801 | Salinity adaptation and gene profiling analysis in the European eel (Anguilla anguilla) using microarray technology |
| Q34739043 | Separate-channel analysis of two-channel microarrays: recovering inter-spot information |
| Q52592705 | Sex, flies and microarrays |
| Q31107889 | Sharp simultaneous confidence intervals for the means of selected populations with application to microarray data analysis |
| Q36246387 | Short day transcriptomic programming during induction of dormancy in grapevine |
| Q33691313 | Should we abandon the t-test in the analysis of gene expression microarray data: a comparison of variance modeling strategies |
| Q41987411 | Shrinkage estimation of effect sizes as an alternative to hypothesis testing followed by estimation in high-dimensional biology: applications to differential gene expression |
| Q53279981 | Simple Comparative Analyses of Differentially Expressed Gene Lists May Overestimate Gene Overlap |
| Q24815780 | Sources of variation in Affymetrix microarray experiments. |
| Q24809585 | Spatial patterns of transcriptional activity in the chromosome of Escherichia coli |
| Q30837003 | SpliceNet: recovering splicing isoform-specific differential gene networks from RNA-Seq data of normal and diseased samples |
| Q36325827 | Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics |
| Q42984757 | Statistical Inference from Multiple iTRAQ Experiments without Using Common Reference Standards |
| Q30748167 | Statistical analysis of differential gene expression relative to a fold change threshold on NanoString data of mouse odorant receptor genes |
| Q44236323 | Statistical analysis of multiplex brain gene expression images |
| Q30483376 | Statistical analysis of relative labeled mass spectrometry data from complex samples using ANOVA |
| Q33207689 | Statistical approaches in the analysis of gene expression data derived from bone regeneration specific cDNA microarrays. |
| Q33571320 | Statistical design and analysis of RNA sequencing data |
| Q32124973 | Statistical intelligence: effective analysis of high-density microarray data |
| Q34669704 | Statistical issues with microarrays: processing and analysis |
| Q33319643 | Statistical methodology for the analysis of dye-switch microarray experiments |
| Q34486956 | Statistical methods for quantitative mass spectrometry proteomic experiments with labeling |
| Q21194873 | Statistical tests for differential expression in cDNA microarray experiments |
| Q33541370 | Statistics and bioinformatics in nutritional sciences: analysis of complex data in the era of systems biology |
| Q34673205 | Striatal molecular signature of subchronic subthalamic nucleus high frequency stimulation in parkinsonian rat. |
| Q33983878 | Study of Arabidopsis thaliana resistome in response to cucumber mosaic virus infection using whole genome microarray |
| Q51534923 | Subset of genes targeted by transcription factor NF-κB in TNFα-stimulated human HeLa cells |
| Q31111585 | Systematic approaches for incorporating control spots and data quality information to improve normalization of cDNA microarray data |
| Q48143099 | Systemic response to aphid infestation by Myzus persicae in the phloem of Apium graveolens |
| Q38334909 | Systems biology approach to understanding post-traumatic stress disorder |
| Q50896849 | Systems level analysis of osteoclastogenesis reveals intrinsic and extrinsic regulatory interactions |
| Q31154706 | TTCA: an R package for the identification of differentially expressed genes in time course microarray data |
| Q31008548 | Technical data of the transcriptomic analysis performed on tsetse fly symbionts, Sodalis glossinidius and Wigglesworthia glossinidia, harbored, respectively by non-infected, Trypanosoma brucei gambiense infected and self-cured Glossina palpalis gamb |
| Q30788588 | Testing for differentially expressed genes with microarray data |
| Q24801330 | Tests for finding complex patterns of differential expression in cancers: towards individualized medicine |
| Q41991330 | The Arabidopsis thaliana Transcription Factor AtMYB102 Functions in Defense Against the Insect Herbivore Pieris rapae |
| Q25255599 | The PowerAtlas: a power and sample size atlas for microarray experimental design and research |
| Q28754888 | The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution |
| Q39723285 | The Statistical Value of Raw Fluorescence Signal in Luminex xMAP Based Multiplex Immunoassays. |
| Q24816513 | The TAO-Gen algorithm for identifying gene interaction networks with application to SOS repair in E. coli |
| Q33795305 | The Zea mays mutants opaque-2 and opaque-7 disclose extensive changes in endosperm metabolism as revealed by protein, amino acid, and transcriptome-wide analyses |
| Q36497975 | The absence of Ser389 phosphorylation in p53 affects the basal gene expression level of many p53-dependent genes and alters the biphasic response to UV exposure in mouse embryonic fibroblasts. |
| Q44876819 | The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster |
| Q30497016 | The core genome of the anaerobic oral pathogenic bacterium Porphyromonas gingivalis |
| Q36750544 | The curse of normalization |
| Q35613683 | The effect of short‐term hypoxic exposure on metabolic gene expression |
| Q43979171 | The endoplasmic reticulum binding protein BiP displays dual function in modulating cell death events. |
| Q33875878 | The functional behavior of a macrophage/fibroblast co-culture model derived from normal and diabetic mice with a marine gelatin-oxidized alginate hydrogel |
| Q36779319 | The influence of parental effects on transcriptomic landscape during early development in brook charr (Salvelinus fontinalis, Mitchill) |
| Q24795105 | The influence of tumor size and environment on gene expression in commonly used human tumor lines |
| Q30882628 | The intraclass correlation coefficient applied for evaluation of data correction, labeling methods, and rectal biopsy sampling in DNA microarray experiments |
| Q33818641 | The landscape of genetic complexity across 5,700 gene expression traits in yeast |
| Q38933542 | The molecular chaperone binding protein BiP prevents leaf dehydration-induced cellular homeostasis disruption. |
| Q34987760 | The pathology of brucellosis reflects the outcome of the battle between the host genome and the Brucella genome |
| Q30653535 | The sharing of cDNA microarray data |
| Q51907692 | The simple classification of multiple cancer types using a small number of significant genes |
| Q33345145 | The transcription factor MtSERF1 of the ERF subfamily identified by transcriptional profiling is required for somatic embryogenesis induced by auxin plus cytokinin in Medicago truncatula. |
| Q34131627 | The transcriptional landscape of cross-specific hybrids and its possible link with growth in brook charr (Salvelinus fontinalis Mitchill). |
| Q50648115 | The transcriptional repressor ARR1-SRDX suppresses pleiotropic cytokinin activities in Arabidopsis |
| Q74308249 | The value of microarray techniques for quantitative gene profiling in molecular diagnostics |
| Q94460114 | The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis |
| Q24795297 | Three-parameter lognormal distribution ubiquitously found in cDNA microarray data and its application to parametric data treatment |
| Q52045600 | Thresholding rules for recovering a sparse signal from microarray experiments |
| Q31151428 | Time-course analysis of genome-wide gene expression data from hormone-responsive human breast cancer cells |
| Q33288492 | Tissue-specific mRNA expression profiling in grape berry tissues |
| Q64066420 | Tobacco-Related Alterations in Airway Gene Expression are Rapidly Reversed Within Weeks Following Smoking-Cessation |
| Q53545550 | Transcript abundance profiles reveal larger and more complex responses of grapevine to chilling compared to osmotic and salinity stress |
| Q38317330 | Transcript analysis of early nodulation events in Medicago truncatula. |
| Q33353965 | Transcript profiling of cytokinin action in Arabidopsis roots and shoots discovers largely similar but also organ-specific responses |
| Q37513666 | Transcription regulation by the Mycobacterium tuberculosis alternative sigma factor SigD and its role in virulence |
| Q30440528 | Transcriptional and apoptotic responses of THP-1 cells to challenge with toxigenic, and non-toxigenic Bacillus anthracis |
| Q41717576 | Transcriptional and metabolic signatures of Arabidopsis responses to chewing damage by an insect herbivore and bacterial infection and the consequences of their interaction |
| Q31120058 | Transcriptional and physiological responses of Bradyrhizobium japonicum to desiccation-induced stress |
| Q51173527 | Transcriptional plasticity of a soil arthropod across different ecological conditions |
| Q39403414 | Transcriptional profiles of primary metabolism and signal transduction-related genes in response to water stress in field-grown sunflower genotypes using a thematic cDNA microarray |
| Q34090485 | Transcriptional profiling and biochemical analysis of mechanically induced cartilaginous tissues in a rat model |
| Q51925538 | Transcriptional profiling of wheat caryopsis development using cDNA microarrays. |
| Q36817906 | Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses. |
| Q41905405 | Transcriptional responses of Escherichia coli K-12 and O157:H7 associated with lettuce leaves |
| Q30481769 | Transcriptome architecture across tissues in the pig |
| Q35265174 | Transcriptome-wide signature of hybrid breakdown associated with intrinsic reproductive isolation in lake whitefish species pairs (Coregonus spp. Salmonidae). |
| Q37252803 | Transformation Model Choice in Nonlinear Regression Analysis of Fluorescence-based Serial Dilution Assays |
| Q24813887 | Transformation of expression intensities across generations of Affymetrix microarrays using sequence matching and regression modeling. |
| Q28537932 | Transient growth arrest in Escherichia coli induced by chromosome condensation |
| Q47936155 | Treatment of Microarray Experiments as Split-Plot Designs |
| Q47247617 | Trends in plant research using molecular markers. |
| Q30493184 | Tumor necrosis factor-alpha regulates transforming growth factor-beta-dependent epithelial-mesenchymal transition by promoting hyaluronan-CD44-moesin interaction. |
| Q37522936 | Tunable regulation of CREB DNA binding activity couples genotoxic stress response and metabolism |
| Q36974569 | Two homologous Agr-like quorum-sensing systems cooperatively control adherence, cell morphology, and cell viability properties in Lactobacillus plantarum WCFS1. |
| Q24799863 | Two-stage normalization using background intensities in cDNA microarray data |
| Q34259303 | Type 1 equilibrative nucleoside transporter regulates astrocyte-specific glial fibrillary acidic protein expression in the striatum |
| Q33644902 | Ultraviolet stress delays chromosome replication in light/dark synchronized cells of the marine cyanobacterium Prochlorococcus marinus PCC9511. |
| Q44361662 | Use of a candidate gene array to delineate gene expression patterns in cattle selected for resistance or susceptibility to intestinal nematodes |
| Q31136974 | Use of genomic DNA control features and predicted operon structure in microarray data analysis: ArrayLeaRNA - a Bayesian approach |
| Q82377488 | Using endophenotypes for pathway clusters to map complex disease genes |
| Q30998155 | Using weighted permutation scores to detect differential gene expression with microarray data |
| Q36320409 | VCNet: Vector based gene Co-expression Network construction and its application to RNA-seq data |
| Q33752284 | Validation and characterization of DNA microarray gene expression data distribution and associated moments |
| Q37380576 | Variability of DNA microarray gene expression profiles in cultured rat primary hepatocytes. |
| Q30676405 | Variable selection and pattern recognition with gene expression data generated by the microarray technology. |
| Q74758308 | Variation in gene expression within and among natural populations |
| Q24796309 | Variation in tissue-specific gene expression among natural populations |
| Q51615514 | Variation of gene expression in Bacillus subtilis samples of fermentation replicates |
| Q59901704 | Vegetables Affect the Expression of Genes Involved in Anticarcinogenic Processes in the Colonic Mucosa of C57Bl/6 Female Mice |
| Q44878147 | Voxelation methods for genome scale imaging of brain gene expression |
| Q38955688 | Water and salinity stress in grapevines: early and late changes in transcript and metabolite profiles |
| Q51737362 | Wnt pathway anomalies in developing amygdalae of Turner syndrome-like mice |
| Q51549832 | Work efficiency: A new criterion for comprehensive comparison and evaluation of statistical methods in large-scale identification of differentially expressed genes |
| Q34472075 | X-inactivation informs variance-based testing for X-linked association of a quantitative trait |
| Q28588764 | cAMP Response Element Binding Protein Is Required for Differentiation of Respiratory Epithelium during Murine Development |
| Q40591603 | cDNA microarray analysis of invasive and tumorigenic phenotypes in a breast cancer model |
| Q48457269 | maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments |
| Q36395827 | miRNA Profiles of Monocyte-Lineage Cells Are Consistent with Complicated Roles in HIV-1 Restriction |
| Q34863055 | svapls: an R package to correct for hidden factors of variability in gene expression studies |
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