Post hoc pattern matching: assigning significance to statistically defined expression patterns in single channel microarray data

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Post hoc pattern matching: assigning significance to statistically defined expression patterns in single channel microarray data is …
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scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcbi/HulshizerB07
P6179Dimensions Publication ID1036048921
P356DOI10.1186/1471-2105-8-240
P932PMC publication ID1934919
P698PubMed publication ID17615071
P5875ResearchGate publication ID6222992

P2093author name stringEric M Blalock
Randall Hulshizer
P2860cites workPreferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control datasetQ21184169
Peculiarities and problems with the EXCEL F-testQ51983117
Error messages when calculating chi-square statistics with microsoft EXCEL.Q52000208
Gene expression profiling of anti-GBM glomerulonephritis model: the role of NF-kappaB in immune complex kidney disease.Q54696581
Functional Interpretation of Microarray ExperimentsQ57837749
Gene-expression profile of the ageing brain in miceQ64779230
Recovering filter-based microarray data for pathways analysis using a multipoint alignment strategyQ73788266
An expression index for Affymetrix GeneChips based on the generalized logarithmQ81208397
Bioconductor: open software development for computational biology and bioinformaticsQ21194861
Significance analysis of microarrays applied to the ionizing radiation responseQ24606608
The effects of aging on gene expression in the hypothalamus and cortex of miceQ24614521
Microarray and comparative genomics-based identification of genes and gene regulatory regions of the mouse immune systemQ24799849
Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experimentsQ24804333
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray dataQ24804397
Analysis of strain and regional variation in gene expression in mouse brainQ24805884
The past, present and future of genome-wide re-annotationQ24806422
Selecting genes by test statisticsQ24811680
DAVID: Database for Annotation, Visualization, and Integrated DiscoveryQ27499374
Significance analysis of time course microarray experimentsQ28769495
TM4: a free, open-source system for microarray data management and analysisQ29547339
Analysis of variance for gene expression microarray dataQ29618940
Memory-specific temporal profiles of gene expression in the hippocampusQ30476907
Microarrays: handling the deluge of data and extracting reliable informationQ30662459
Methods for assessing reproducibility of clustering patterns observed in analyses of microarray dataQ30746030
Pattern recognition techniques in microarray data analysis: a surveyQ30770100
Clustering of time-course gene expression data using a mixed-effects model with B-splinesQ30773305
Microarrays, pattern recognition and exploratory data analysisQ30794763
Using hidden Markov models to analyze gene expression time course dataQ30811151
Statistical significance analysis of longitudinal gene expression dataQ30824721
Finding unexpected patterns in microarray data.Q30886392
Open source software for the analysis of microarray data.Q30908804
Empirical bayes gene screening tool for time-course or dose-response microarray dataQ30968482
Clustering of gene expression data using a local shape-based similarity measureQ30974278
Differential and trajectory methods for time course gene expression dataQ30989514
Dynamic model-based clustering for time-course gene expression dataQ30998130
Unsupervised pattern recognition: an introduction to the whys and wherefores of clustering microarray dataQ31030008
Ontology-driven approaches to analyzing data in functional genomicsQ31039328
Multivariate curve resolution of time course microarray data.Q31048682
Comparisons and validation of statistical clustering techniques for microarray gene expression dataQ31133875
A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray dataQ33205902
Gene expression profiling of muscle tissue in Brahman steers during nutritional restriction.Q33209631
Estimating the number of clusters in DNA microarray dataQ33236517
Are clusters found in one dataset present in another dataset?Q33239877
Identification of gene expression patterns using planned linear contrastsQ33242476
Calcineurin triggers reactive/inflammatory processes in astrocytes and is upregulated in aging and Alzheimer's modelsQ33947378
Analysis of complex brain disorders with gene expression microarrays: schizophrenia as a disease of the synapseQ34321656
Gene regulation and DNA damage in the ageing human brainQ34326236
The neurobiology of agingQ34480777
Absolute enrichment: gene set enrichment analysis for homeostatic systemsQ35225475
Progress in the use of microarray technology to study the neurobiology of diseaseQ35758811
Ca2+ and mitochondria as substrates for deficits in synaptic plasticity in normal brain ageing.Q35837762
Open-minded scepticism: inferring the causal mechanisms of human ageing from genetic perturbationsQ35993738
Cells discover fire: employing reactive oxygen species in development and consequences for aging.Q36286671
Harnessing the power of gene microarrays for the study of brain aging and Alzheimer's disease: statistical reliability and functional correlationQ36300551
Pharmacological and molecular enhancement of learning in aging and Alzheimer's disease.Q36386872
Normalization and quantification of differential expression in gene expression microarraysQ36505942
Incipient Alzheimer's disease: microarray correlation analyses reveal major transcriptional and tumor suppressor responsesQ36605276
The glucocorticoid hypothesis of brain aging and neurodegeneration: recent modificationsQ37003181
Hierarchical Bayesian neural network for gene expression temporal patternsQ37024432
Stress and the aging hippocampusQ38461795
Microarray-based discovery of highly expressed olfactory mucosal genes: potential roles in the various functions of the olfactory systemQ38522532
Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-TranslateQ38522713
The glucocorticoid hypothesis of age-related hippocampal neurodegeneration: role of dysregulated intraneuronal calcium.Q40572701
Calcium hypothesis of Alzheimer's disease and brain aging.Q40586783
A novel time-course cDNA microarray analysis method identifies genes associated with the development of cisplatin resistanceQ40596797
Gene selection and clustering for time-course and dose-response microarray experiments using order-restricted inferenceQ40651184
A unified approach for simultaneous gene clustering and differential expression identificationQ42605603
caGEDA: a web application for the integrated analysis of global gene expression patterns in cancer.Q42674587
Gene Microarrays in Hippocampal Aging: Statistical Profiling Identifies Novel Processes Correlated with Cognitive ImpairmentQ44433403
Identification of hypertension-related genes through an integrated genomic-transcriptomic approachQ45282748
A regression-based method to identify differentially expressed genes in microarray time course studies and its application in an inducible Huntington's disease transgenic modelQ45306582
Bagging to improve the accuracy of a clustering procedureQ46272204
Using ANOVA for gene selection from microarray studies of the nervous systemQ47406210
Evolving aspects of the glucocorticoid hypothesis of brain aging: hormonal modulation of neuronal calcium homeostasisQ48096654
maSigPro: a method to identify significantly differential expression profiles in time-course microarray experimentsQ48457269
Brain response to traumatic brain injury in wild-type and interleukin-6 knockout mice: a microarray analysisQ49126142
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P921main subjectstatisticsQ12483
pattern matchingQ1503724
P304page(s)240
P577publication date2007-07-05
P1433published inBMC BioinformaticsQ4835939
P1476titlePost hoc pattern matching: assigning significance to statistically defined expression patterns in single channel microarray data
P478volume8

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cites work (P2860)
Q33410446Analyzing microarray data with transitive directed acyclic graphs
Q42100322Autotaxin and its product lysophosphatidic acid suppress brown adipose differentiation and promote diet-induced obesity in mice
Q34607935Differential gene expression in liver and small intestine from lactating rats compared to age-matched virgin controls detects increased mRNA of cholesterol biosynthetic genes
Q37607834Discovery of Emphysema Relevant Molecular Networks from an A/J Mouse Inhalation Study Using Reverse Engineering and Forward Simulation (REFS™).
Q43535446Effects of an adverse-drug-event alert system on cost and quality outcomes in community hospitals.
Q28383360Exploiting dependencies of pairwise comparison outcomes to predict patterns of gene response
Q42113645External light conditions and internal cell cycle phases coordinate accumulation of chloroplast and mitochondrial transcripts in the red alga Cyanidioschyzon merolae.
Q41988739HPLC-MS Analysis of Lichen-Derived Metabolites in the Life Stages of Crambidia cephalica (Grote & Robinson).
Q28476766Identification of Single- and Multiple-Class Specific Signature Genes from Gene Expression Profiles by Group Marker Index
Q36050670Thermodynamically optimal whole-genome tiling microarray design and validation
Q45798881Using partially ordered sets to represent and predict true patterns of gene response to treatments

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