| scholarly article | Q13442814 |
| P50 | author | Raffaele A. Calogero | Q41241289 |
| Ernesto Picardi | Q54438367 | ||
| Anna Maria D'Erchia | Q57017542 | ||
| Matteo Pallocca | Q58146299 | ||
| P2093 | author name string | Tiziana Castrignanò | |
| Graziano Pesole | |||
| Mattia D'Antonio | |||
| Paolo D'Onorio De Meo | |||
| P2860 | cites work | Ultrafast and memory-efficient alignment of short DNA sequences to the human genome | Q21183894 |
| Differential expression analysis for sequence count data | Q21184103 | ||
| TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions | Q21999527 | ||
| RNA-Seq: a revolutionary tool for transcriptomics | Q24596169 | ||
| The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants | Q24609857 | ||
| Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis | Q37720691 | ||
| FineSplice, enhanced splice junction detection and quantification: a novel pipeline based on the assessment of diverse RNA-Seq alignment solutions. | Q37734409 | ||
| FX: an RNA-Seq analysis tool on the cloud. | Q38418597 | ||
| Identification of novel transcripts in annotated genomes using RNA-Seq | Q46596669 | ||
| ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing | Q24614591 | ||
| Biases in Illumina transcriptome sequencing caused by random hexamer priming | Q24620975 | ||
| Patterns of variant polyadenylation signal usage in human genes | Q24624061 | ||
| Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation | Q24627354 | ||
| NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins | Q24676525 | ||
| Fast gapped-read alignment with Bowtie 2 | Q27860699 | ||
| edgeR: a Bioconductor package for differential expression analysis of digital gene expression data | Q27860819 | ||
| The Sequence Alignment/Map format and SAMtools | Q27860966 | ||
| Alternative isoform regulation in human tissue transcriptomes | Q27861118 | ||
| Galaxy: a web-based genome analysis tool for experimentalists | Q28270252 | ||
| Ensembl 2013 | Q28280494 | ||
| Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses | Q29547647 | ||
| Understanding mechanisms underlying human gene expression variation with RNA sequencing | Q29614412 | ||
| Differential analysis of gene regulation at transcript resolution with RNA-seq | Q29614490 | ||
| STAR: ultrafast universal RNA-seq aligner | Q29615052 | ||
| Reanalysis of RNA-sequencing data reveals several additional fusion genes with multiple isoforms | Q30575805 | ||
| WEP: a high-performance analysis pipeline for whole-exome data | Q30652513 | ||
| ARH-seq: identification of differential splicing in RNA-seq data | Q30830564 | ||
| Challenges of sequencing human genomes | Q33592630 | ||
| Cloud computing and the DNA data race | Q33630356 | ||
| baySeq: empirical Bayesian methods for identifying differential expression in sequence count data | Q33653650 | ||
| RseqFlow: workflows for RNA-Seq data analysis | Q33973293 | ||
| ChimeraScan: a tool for identifying chimeric transcription in sequencing data | Q33992728 | ||
| The Sequence Read Archive: explosive growth of sequencing data. | Q34051179 | ||
| MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data | Q34135283 | ||
| NGS QC Toolkit: a toolkit for quality control of next generation sequencing data | Q34152647 | ||
| PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text | Q34248109 | ||
| MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing | Q34494158 | ||
| Alternative splicing and evolution: diversification, exon definition and function | Q34618555 | ||
| NGS-Trex: Next Generation Sequencing Transcriptome profile explorer | Q34787758 | ||
| Identification of fusion genes in breast cancer by paired-end RNA-sequencing | Q34964405 | ||
| SpliceTrap: a method to quantify alternative splicing under single cellular conditions | Q35411691 | ||
| Differential expression in RNA-seq: a matter of depth | Q35581592 | ||
| mRNA expression, splicing and editing in the embryonic and adult mouse cerebral cortex | Q36721573 | ||
| Targeted RNA sequencing reveals the deep complexity of the human transcriptome | Q37009455 | ||
| P4510 | describes a project that uses | DESeq2 | Q113018293 |
| edgeR | Q113334690 | ||
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | RNA sequencing | Q2542347 |
| RNA-Seq | Q68168612 | ||
| RNA analysis | Q95588220 | ||
| P304 | page(s) | S3 | |
| P577 | publication date | 2015-06-01 | |
| P1433 | published in | BMC Genomics | Q15765854 |
| P1476 | title | RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application | |
| P478 | volume | 16 |
| Q49881851 | Acadian variant of Fanconi syndrome is caused by mitochondrial respiratory chain complex I deficiency due to a non-coding mutation in complex I assembly factor NDUFAF6. |
| Q39920185 | Advancements in RNASeqGUI towards a Reproducible Analysis of RNA-Seq Experiments |
| Q37520401 | Candidate genes and pathways downstream of PAX8 involved in ovarian high-grade serous carcinoma |
| Q48172655 | Che-1 is targeted by c-Myc to sustain proliferation in pre-B-cell acute lymphoblastic leukemia |
| Q37651068 | Che-1 sustains hypoxic response of colorectal cancer cells by affecting Hif-1α stabilization |
| Q38843102 | Comprehensive site-specific whole genome profiling of stromal and epithelial colonic gene signatures in human sigmoid colon and rectal tissue |
| Q45943481 | Computational systems biology approaches for Parkinson's disease. |
| Q26776038 | Cracking the Code of Human Diseases Using Next-Generation Sequencing: Applications, Challenges, and Perspectives |
| Q57973932 | Deficiency in the nuclear long noncoding RNA causes myogenic defects and heart remodeling in mice |
| Q37688571 | Deptor transcriptionally regulates endoplasmic reticulum homeostasis in multiple myeloma cells. |
| Q42695210 | ExpressionDB: An open source platform for distributing genome-scale datasets |
| Q64388787 | Genome-wide mapping of 8-oxo-7,8-dihydro-2'-deoxyguanosine reveals accumulation of oxidatively-generated damage at DNA replication origins within transcribed long genes of mammalian cells |
| Q38665790 | Human iPSC Glial Mouse Chimeras Reveal Glial Contributions to Schizophrenia |
| Q36268826 | LocExpress: a web server for efficiently estimating expression of novel transcripts. |
| Q64068087 | Multiomics Assessment of Gene Expression in a Clinical Strain of CTX-M-15-Producing ST131 Escherichia coli |
| Q37190361 | Multitargeting activity of miR-24 inhibits long-term melatonin anticancer effects |
| Q56999089 | Next-generation sequencing revolution through big data analytics |
| Q42529916 | Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics |
| Q38796877 | RNA editing signature during myeloid leukemia cell differentiation. |
| Q39182602 | Resetting cancer stem cell regulatory nodes upon MYC inhibition. |
| Q35915015 | SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis |
| Q47805451 | Structural plasticity of mini-M conotoxins - expression of all mini-M subtypes by Conus regius. |
| Q38674661 | The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy |
| Q30488940 | expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform. |
| Q39016298 | hppRNA-a Snakemake-based handy parameter-free pipeline for RNA-Seq analysis of numerous samples |
| Q39776046 | miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis |
| Q36138772 | systemPipeR: NGS workflow and report generation environment |
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