| scholarly article | Q13442814 |
| P50 | author | Anton Nekrutenko | Q30004030 |
| James Taylor | Q30362443 | ||
| Daniel Blankenberg | Q47451229 | ||
| Mary Mangan | Q55155130 | ||
| Ross Lazarus | Q56440832 | ||
| P2093 | author name string | Gregory Von Kuster | |
| Guruprasad Ananda | |||
| Nathaniel Coraor | |||
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| The UCSC Genome Browser Database: 2008 update | Q29614575 | ||
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | Unit 19.10.1-21 | |
| P577 | publication date | 2010-01-01 | |
| P1433 | published in | Current protocols in molecular biology | Q26841809 |
| P1476 | title | Galaxy: a web-based genome analysis tool for experimentalists | |
| P478 | volume | Chapter 19 |
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| Q34482091 | Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic |
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| Q36754737 | Distinct mutational behaviors differentiate short tandem repeats from microsatellites in the human genome |
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| Q55314525 | Draft Genome Sequences of Cloacibacterium normanense IMET F, a Microalgal Growth-Promoting Bacterium, and Aeromonas jandaei IMET J, a Microalgal Growth-Inhibiting Bacterium. |
| Q41826174 | Draft Genome of the Heterotrophic Iron-Oxidizing Bacterium "Acidibacillus ferroxidans" Huett2, Isolated from a Mine Drainage Ditch in Freiberg, Germany |
| Q36354873 | Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains |
| Q36637712 | Dual RNA-Sequencing of Eucalyptus nitens during Phytophthora cinnamomi Challenge Reveals Pathogen and Host Factors Influencing Compatibility. |
| Q34256415 | Dual transcriptional profiling of mice and Toxoplasma gondii during acute and chronic infection |
| Q34453834 | Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease. |
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| Q36942388 | Early developmental gene enhancers affect subcortical volumes in the adult human brain |
| Q42314837 | Early metabolic and transcriptional variations in fruit of natural white-fruited Fragaria vesca genotypes |
| Q40109156 | Ebola virus encodes a miR-155 analog to regulate importin-α5 expression |
| Q48789186 | Efficient introduction of specific homozygous and heterozygous mutations using CRISPR/Cas9. |
| Q36250175 | Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell |
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| Q30641822 | Encore: Genetic Association Interaction Network centrality pipeline and application to SLE exome data |
| Q36317809 | Enhancing knowledge discovery from cancer genomics data with Galaxy. |
| Q36626342 | Epigenetic Studies Point to DNA Replication/Repair Genes as a Basis for the Heritable Nature of Long Term Complications in Diabetes |
| Q36973678 | Epimicrobiota Associated with the Decay and Recovery of Orbicella Corals Exhibiting Dark Spot Syndrome |
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| Q36319863 | Evaluating alignment and variant-calling software for mutation identification in C. elegans by whole-genome sequencing. |
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| Q36558508 | Evidence for Epigenetic Regulation of Pro-Inflammatory Cytokines, Interleukin-12 and Interferon Gamma, in Peripheral Blood Mononuclear Cells from PTSD Patients |
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| Q50424275 | Evolutionary expansion of DNA hypomethylation in the mammalian germline genome |
| Q38872885 | Examination of Enterococcus faecalis Toxin-Antitoxin System Toxin Fst Function Utilizing a Pheromone-Inducible Expression Vector with Tight Repression and Broad Dynamic Range. |
| Q30987801 | Experiences with workflows for automating data-intensive bioinformatics |
| Q35930289 | Experimental analysis of sources of error in evolutionary studies based on Roche/454 pyrosequencing of viral genomes |
| Q31151046 | Exploiting the great potential of Sequence Capture data by a new tool, SUPER-CAP. |
| Q35897576 | Exploration of Human Salivary Microbiomes--Insights into the Novel Characteristics of Microbial Community Structure in Caries and Caries-Free Subjects |
| Q34413161 | Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis. |
| Q34302131 | Exploring massive, genome scale datasets with the GenometriCorr package |
| Q90315388 | Exploring temporal patterns of bacterial and fungal DNA accumulation on a ventilation system filter for a Singapore university library |
| Q64448563 | Expression of Adhesive Pili and the Collagen-Binding Adhesin Ace Is Activated by ArgR Family Transcription Factors in Enterococcus faecalis |
| Q36545552 | Expression of young HERV-H loci in the course of colorectal carcinoma and correlation with molecular subtypes |
| Q55261640 | Extensive screening of microRNA populations identifies hsa-miR-375 and hsa-miR-133a-3p as selective markers for human rectal and colon cancer. |
| Q33866995 | Failure of phylogeny inferred from multilocus sequence typing to represent bacterial phylogeny. |
| Q30936506 | Fastq2vcf: a concise and transparent pipeline for whole-exome sequencing data analyses |
| Q36170695 | Fine Mapping of a Dravet Syndrome Modifier Locus on Mouse Chromosome 5 and Candidate Gene Analysis by RNA-Seq |
| Q92859715 | Forward Genetic Screen for Caenorhabditis elegans Mutants with a Shortened Locomotor Healthspan |
| Q30040556 | Forward Genetics by Genome Sequencing Reveals That Rapid Cyanide Release Deters Insect Herbivory of Sorghum bicolor |
| Q35527797 | From benchtop to desktop: important considerations when designing amplicon sequencing workflows |
| Q36668920 | From next-generation sequencing alignments to accurate comparison and validation of single-nucleotide variants: the pibase software |
| Q35954542 | From the desktop to the grid: scalable bioinformatics via workflow conversion |
| Q30935358 | Fully automated pipeline for detection of sex linked genes using RNA-Seq data. |
| Q35590286 | Functional and mechanistic studies of XPC DNA-repair complex as transcriptional coactivator in embryonic stem cells |
| Q33701265 | Functional dissection of NEAT1 using genome editing reveals substantial localization of the NEAT1_1 isoform outside paraspeckles |
| Q37619287 | Functional microRNAs and target sites are created by lineage-specific transposition |
| Q38930208 | Functional redundancy in the nuclear compartmentalization of the late-replicating genome |
| Q36180589 | Functional variants of human papillomavirus type 16 demonstrate host genome integration and transcriptional alterations corresponding to their unique cancer epidemiology. |
| Q92153081 | Fungal and Bacterial Communities Exhibit Consistent Responses to Reversal of Soil Acidification and Phosphorus Limitation over Time |
| Q34089185 | GCAT-SEEKquence: genome consortium for active teaching of undergraduates through increased faculty access to next-generation sequencing data |
| Q42129608 | GRHL3 binding and enhancers rearrange as epidermal keratinocytes transition between functional states. |
| Q34350973 | GRHL3/GET1 and trithorax group members collaborate to activate the epidermal progenitor differentiation program |
| Q37661931 | GWIPS-viz: development of a ribo-seq genome browser |
| Q28595781 | Galaxy Workflows for Web-based Bioinformatics Analysis of Aptamer High-throughput Sequencing Data |
| Q37219358 | Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology |
| Q37424925 | Galaxy tools to study genome diversity. |
| Q21092859 | Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences |
| Q59358014 | Gallid Herpesvirus 1 Initiates Apoptosis in Uninfected Cells through Paracrine Repression of p53 |
| Q39768158 | GenPlay Multi-Genome, a tool to compare and analyze multiple human genomes in a graphical interface |
| Q57810027 | Gene expression profiling in a mouse model of Dravet syndrome |
| Q90006461 | Gene silencing by double-stranded RNA from C. elegans neurons reveals functional mosaicism of RNA interference |
| Q36029976 | Generation of a synthetic GlcNAcylated nucleosome reveals regulation of stability by H2A-Thr101 GlcNAcylation |
| Q39104263 | Genetic predisposition to high anxiety- and depression-like behavior coincides with diminished DNA methylation in the adult rat amygdala. |
| Q33361050 | Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins |
| Q58702723 | Genome Wide Identification of Mutational Hotspots in the Apicomplexan Parasite Neospora caninum and the Implications for Virulence |
| Q55426160 | Genome data uncover four synergistic key regulators for extremely small body size in horses. |
| Q37644938 | Genome wide identification of fruitless targets suggests a role in upregulating genes important for neural circuit formation |
| Q40211764 | Genome-Wide Survey of Pseudomonas aeruginosa PA14 Reveals a Role for the Glyoxylate Pathway and Extracellular Proteases in the Utilization of Mucin. |
| Q28657569 | Genome-scale sequencing to identify genes involved in Mendelian disorders |
| Q35384578 | Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes. |
| Q47142220 | Genome-wide DNase hypersensitivity, and occupancy of RUNX2 and CTCF reveal a highly dynamic gene regulome during MC3T3 pre-osteoblast differentiation |
| Q35906122 | Genome-wide Runx2 occupancy in prostate cancer cells suggests a role in regulating secretion |
| Q57794275 | Genome-wide analyses of miniature inverted-repeat transposable elements reveals new insights into the evolution of the Triticum-Aegilops group |
| Q36180219 | Genome-wide analysis of p63 binding sites identifies AP-2 factors as co-regulators of epidermal differentiation |
| Q35889279 | Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus |
| Q40165187 | Genome-wide characterization reveals complex interplay between TP53 and TP63 in response to genotoxic stress |
| Q35576105 | Genome-wide comparison of PU.1 and Spi-B binding sites in a mouse B lymphoma cell line. |
| Q46614925 | Genome-wide detection and characterization of mating asymmetry in human populations |
| Q34649734 | Genome-wide determinants of proviral targeting, clonal abundance and expression in natural HTLV-1 infection |
| Q37550517 | Genome-wide histone state profiling of fibroblasts from the opossum, Monodelphis domestica, identifies the first marsupial-specific imprinted gene. |
| Q46554107 | Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions |
| Q34356312 | Genome-wide localization of protein-DNA binding and histone modification by a Bayesian change-point method with ChIP-seq data |
| Q53073432 | Genome-wide mutant profiling predicts the mechanism of a Lipid II binding antibiotic. |
| Q34272305 | Genome-wide recruitment to Polycomb-modified chromatin and activity regulation of the synovial sarcoma oncogene SYT-SSX2. |
| Q36782224 | Genome-wide reprogramming of the chromatin landscape underlies endocrine therapy resistance in breast cancer |
| Q34760829 | Genome-wide small RNA sequencing and gene expression analysis reveals a microRNA profile of cancer susceptibility in ATM-deficient human mammary epithelial cells. |
| Q33801920 | Genomic landscape of human, bat, and ex vivo DNA transposon integrations |
| Q30410093 | Genomics: moving behavioural ecology beyond the phenotypic gambit |
| Q35388414 | Genotype and cardiovascular phenotype correlations with TBX1 in 1,022 velo-cardio-facial/DiGeorge/22q11.2 deletion syndrome patients |
| Q28602475 | Giraffe genome sequence reveals clues to its unique morphology and physiology |
| Q33419895 | Global analysis of posttranscriptional regulation by GlmY and GlmZ in enterohemorrhagic Escherichia coli O157:H7 |
| Q34058172 | Global mapping of cell type-specific open chromatin by FAIRE-seq reveals the regulatory role of the NFI family in adipocyte differentiation |
| Q89701678 | Grafting alters tomato transcriptome and enhances tolerance to an airborne virus infection |
| Q35030160 | Gut Lactobacillales are associated with higher CD4 and less microbial translocation during HIV infection |
| Q38904000 | H3 ubiquitination by NEDD4 regulates H3 acetylation and tumorigenesis |
| Q37545478 | Harnessing genetic diversity in Saccharomyces cerevisiae for fermentation of xylose in hydrolysates of alkaline hydrogen peroxide-pretreated biomass |
| Q37258798 | Heme acquisition in the parasitic filarial nematode Brugia malayi |
| Q64965726 | High Resolution Mapping of Rph MBR1012 Conferring Resistance to Puccinia hordei in Barley (Hordeum vulgare L.). |
| Q36185593 | High-Throughput Parallel Sequencing to Measure Fitness of Leptospira interrogans Transposon Insertion Mutants during Acute Infection. |
| Q47667039 | High-throughput Parallel Sequencing to Measure Fitness of Leptospira interrogans Transposon Insertion Mutants During Golden Syrian Hamster Infection |
| Q35022826 | High-throughput sequencing of islet-infiltrating memory CD4+ T cells reveals a similar pattern of TCR Vβ usage in prediabetic and diabetic NOD mice |
| Q47551736 | Higher sequence diversity in the vaginal tract than in blood at early HIV-1 infection. |
| Q36182106 | Hippo signaling influences HNF4A and FOXA2 enhancer switching during hepatocyte differentiation |
| Q33846410 | Histone modifications are associated with Δ9-tetrahydrocannabinol-mediated alterations in antigen-specific T cell responses |
| Q47098837 | Host Genetic Variation Does Not Determine Spatio-Temporal Patterns of European Bat 1 Lyssavirus |
| Q92700040 | Host Src controls gallid alpha herpesvirus 1 intercellular spread in a cellular fatty acid metabolism-dependent manner |
| Q37574219 | Hox in motion: tracking HoxA cluster conformation during differentiation |
| Q21563355 | Hsp70-Hsp40 chaperone complex functions in controlling polarized growth by repressing Hsf1-driven heat stress-associated transcription |
| Q34105820 | HumMeth27QCReport: an R package for quality control and primary analysis of Illumina Infinium methylation data |
| Q38794889 | Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy |
| Q34733135 | IL-22-producing CD4+ cells are depleted in actively inflamed colitis tissue |
| Q24701803 | Identification and Characterization of Two Novel RNA Viruses from Anopheles gambiae Species Complex Mosquitoes |
| Q91725799 | Identification and Quantification of Proteoforms by Mass Spectrometry |
| Q30559452 | Identification and analysis of pig chimeric mRNAs using RNA sequencing data |
| Q36667419 | Identification of CodY targets in Bacillus anthracis by genome-wide in vitro binding analysis |
| Q40046347 | Identification of a mouse Lactobacillus johnsonii strain with deconjugase activity against the FXR antagonist T-β-MCA. |
| Q61445099 | Identification of candidate neoantigens produced by fusion transcripts in human osteosarcomas |
| Q35740642 | Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites |
| Q37734734 | Identification of in vivo regulators of the Vibrio cholerae xds gene using a high-throughput genetic selection |
| Q36018581 | Identification of mammalian-adapting mutations in the polymerase complex of an avian H5N1 influenza virus |
| Q30749239 | Identification of novel point mutations in splicing sites integrating whole-exome and RNA-seq data in myeloproliferative diseases |
| Q37126629 | Identification of shared TCR sequences from T cells in human breast cancer using emulsion RT-PCR |
| Q34114670 | Identifying elemental genomic track types and representing them uniformly |
| Q36501801 | Identifying human-rhesus macaque gene orthologs using heterospecific SNP probes |
| Q45906516 | IgH loci of American alligator and saltwater crocodile shed light on IgA evolution. |
| Q37193174 | Immune cell-specific transcriptional profiling highlights distinct molecular pathways controlled by Tob1 upon experimental autoimmune encephalomyelitis |
| Q34360686 | Immune response of the Caribbean sea fan, Gorgonia ventalina, exposed to an Aplanochytrium parasite as revealed by transcriptome sequencing |
| Q35509152 | ImmunoGlobulin galaxy (IGGalaxy) for simple determination and quantitation of immunoglobulin heavy chain rearrangements from NGS |
| Q45976658 | Immunoglobulin genes of the turtles. |
| Q42210618 | Immunoglobulin heavy chains in medaka (Oryzias latipes). |
| Q36115147 | Impact of flanking chromosomal sequences on localization and silencing by the human non-coding RNA XIST. |
| Q47151248 | Impact of the G84E variant on HOXB13 gene and protein expression in formalin-fixed, paraffin-embedded prostate tumours. |
| Q90261799 | Impacts of environmental complexity on respiratory and gut microbiome community structure and diversity in growing pigs |
| Q35178920 | Implementation of Cloud based next generation sequencing data analysis in a clinical laboratory. |
| Q42557646 | Improved binding site assignment by high-resolution mapping of RNA-protein interactions using iCLIP |
| Q41748778 | In Vitro selection of Neisseria gonorrhoeae mutants with elevated MIC values and increased resistance to cephalosporins |
| Q41654100 | In vitro reconstitution demonstrates the cell wall ligase activity of LCP proteins |
| Q38260979 | Incorporating computational resources in a cancer research program |
| Q37708268 | Increased genomic burden of germline copy number variants is associated with early onset breast cancer: Australian breast cancer family registry |
| Q35904251 | Increasing the Richness of Culturable Arsenic-Tolerant Bacteria from Theonella swinhoei by Addition of Sponge Skeleton to the Growth Medium |
| Q48147324 | Inferences on specificity recognition at the Malus×domestica gametophytic self-incompatibility system |
| Q37620745 | Influences of pH and Iron Concentration on the Salivary Microbiome in Individual Humans with and without Caries |
| Q41754144 | Insights into p53 transcriptional function via genome-wide chromatin occupancy and gene expression analysis |
| Q34485099 | Insulator function and topological domain border strength scale with architectural protein occupancy |
| Q64910666 | Integrated entropy-based approach for analyzing exons and introns in DNA sequences. |
| Q34038417 | Integrated high-throughput analysis identifies Sp1 as a crucial determinant of p53-mediated apoptosis |
| Q39960763 | Integrated whole-genome sequencing and temporospatial analysis of a continuing Group A Streptococcus epidemic |
| Q28236549 | Integrating diverse databases into an unified analysis framework: a Galaxy approach |
| Q30000090 | Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data Analysis |
| Q31116335 | Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases |
| Q36354909 | Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes |
| Q50732745 | Integration-free induced pluripotent stem cells model genetic and neural developmental features of down syndrome etiology |
| Q42089762 | Integrative analysis of DNA copy number, DNA methylation and gene expression in multiple myeloma reveals alterations related to relapse. |
| Q90371866 | Integrative analysis of gut microbiome and metabolites revealed novel mechanisms of intestinal Salmonella carriage in chicken |
| Q34455163 | Integrative analysis of somatic mutations altering microRNA targeting in cancer genomes |
| Q90715096 | Interactions between antenatal sulfadoxine-pyrimethamine, drug-resistant Plasmodium falciparum parasites and delivery outcomes in Malawi |
| Q35788666 | Interspecies Gene Name Extrapolation--A New Approach. |
| Q28597874 | Investigating core genetic-and-epigenetic cell cycle networks for stemness and carcinogenic mechanisms, and cancer drug design using big database mining and genome-wide next-generation sequencing data |
| Q36648689 | Isolation of a Hypomorphic skn-1 Allele That Does Not Require a Balancer for Maintenance |
| Q88876410 | Jenkins-CI, an Open-Source Continuous Integration System, as a Scientific Data and Image-Processing Platform |
| Q37656564 | Kepler WebView: A Lightweight, Portable Framework for Constructing Real-time Web Interfaces of Scientific Workflows |
| Q37229186 | KnowEnG: a knowledge engine for genomics. |
| Q42367988 | LMO2 is required for TAL1 DNA binding activity and initiation of definitive haematopoiesis at the haemangioblast stage. |
| Q36225338 | Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts |
| Q35635739 | Large-scale discovery of enhancers from human heart tissue |
| Q36575292 | Latent regulatory potential of human-specific repetitive elements |
| Q37579830 | Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline |
| Q57234033 | Lessons learned from Galaxy, a Web-based platform for high-throughput genomic analyses |
| Q34782992 | Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data |
| Q36745048 | Leukemia-associated activating mutation of Flt3 expands dendritic cells and alters T cell responses |
| Q36313066 | Leveraging ethnic group incidence variation to investigate genetic susceptibility to glioma: a novel candidate SNP approach |
| Q28658731 | Leveraging the national cyberinfrastructure for biomedical research |
| Q35794357 | Library Construction for Mutation Identification by Whole-Genome Sequencing |
| Q38160843 | Life at high salt concentrations, intracellular KCl concentrations, and acidic proteomes |
| Q90592172 | Light affects tissue patterning of the hypocotyl in the shade-avoidance response |
| Q41620260 | Lineage overwhelms environmental conditions in determining rhizosphere bacterial community structure in a cosmopolitan invasive plant |
| Q90219807 | Linkage analysis and whole exome sequencing reveals AHNAK2 as a novel genetic cause for autosomal recessive CMT in a Malaysian family |
| Q37483033 | Localization and Transcriptional Responses of Chrysoporthe austroafricana in Eucalyptus grandis Identify Putative Pathogenicity Factors. |
| Q34670147 | Long-range transcriptional regulation by the p110 CUX1 homeodomain protein on the ENCODE array |
| Q30854061 | Lost in plasmids: next generation sequencing and the complex genome of the tick-borne pathogen Borrelia burgdorferi |
| Q37181211 | MEF2C protects bone marrow B-lymphoid progenitors during stress haematopoiesis |
| Q40001839 | MMuFLR: missense mutation and frameshift location reporter |
| Q33761996 | MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks. |
| Q28243703 | Making whole genome multiple alignments usable for biologists |
| Q37485567 | Male-Specific Transcription Factor Occupancy Alone Does Not Account for Differential Methylation at Imprinted Genes in the mouse Germ Cell Lineage. |
| Q27024732 | Managing, analysing, and integrating big data in medical bioinformatics: open problems and future perspectives |
| Q28285724 | Manipulation of FASTQ data with Galaxy |
| Q30572370 | Mapping genetic modifiers of survival in a mouse model of Dravet syndrome |
| Q41545459 | Mapping mutations in plant genomes with the user-friendly web application CandiSNP. |
| Q35870178 | Mapping the CgrA regulon of Rhodospirillum centenum reveals a hierarchal network controlling Gram-negative cyst development. |
| Q28583278 | Marine and giant viruses as indicators of a marine microbial community in a riverine system |
| Q36642236 | Mature microsatellites: mechanisms underlying dinucleotide microsatellite mutational biases in human cells |
| Q35141776 | Measuring turnover of SIV DNA in resting CD4+ T cells using pyrosequencing: implications for the timing of HIV eradication therapies |
| Q38977206 | Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways |
| Q30883144 | MetaDB a Data Processing Workflow in Untargeted MS-Based Metabolomics Experiments. |
| Q36357346 | MetaGenSense: A web-application for analysis and exploration of high throughput sequencing metagenomic data |
| Q38404566 | MetaPalette: a k-mer Painting Approach for Metagenomic Taxonomic Profiling and Quantification of Novel Strain Variation |
| Q50035710 | Metabolomics of tomato xylem sap during bacterial wilt reveals Ralstonia solanacearum produces abundant putrescine, a metabolite that accelerates wilt disease. |
| Q35557728 | Metagenomic biomarker discovery and explanation |
| Q26776163 | Metagenomics: Retrospect and Prospects in High Throughput Age |
| Q30953199 | Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies |
| Q35162769 | Metatranscriptome of an anaerobic benzene-degrading, nitrate-reducing enrichment culture reveals involvement of carboxylation in benzene ring activation |
| Q28114487 | Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data |
| Q41471467 | MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution |
| Q35634001 | MicroRNA transcriptome analysis identifies miR-365 as a novel negative regulator of cell proliferation in Zmpste24-deficient mouse embryonic fibroblasts |
| Q35889138 | Microbial and Functional Diversity within the Phyllosphere of Espeletia Species in an Andean High-Mountain Ecosystem. |
| Q53209412 | Microbial manganese(III) reduction fuelled by anaerobic acetate oxidation. |
| Q36160472 | Microbiome and Exudates of the Root and Rhizosphere of Brachypodium distachyon, a Model for Wheat |
| Q35818694 | Microbiome shifts and the inhibition of quorum sensing by Black Band Disease cyanobacteria. |
| Q37630912 | Microbiomic differences in tumor and paired-normal tissue in head and neck squamous cell carcinomas. |
| Q34525116 | Microbiota diversity and gene expression dynamics in human oral biofilms |
| Q33739450 | Microbiota-induced peritrophic matrix regulates midgut homeostasis and prevents systemic infection of malaria vector mosquitoes. |
| Q28540820 | Microsatellite interruptions stabilize primate genomes and exist as population-specific single nucleotide polymorphisms within individual human genomes |
| Q34583957 | Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements |
| Q35609034 | Mimoza: web-based semantic zooming and navigation in metabolic networks |
| Q40275733 | Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes |
| Q39140349 | Mitochondrial DNA sequence and phylogenetic evaluation of geographically disparate Sus scrofa breeds. |
| Q47207584 | Mobilization of Stowaway-like MITEs in newly formed allohexaploid wheat species. |
| Q47966835 | Molecular convergence of the parasitic plant species Cuscuta reflexa and Phelipanche aegyptiaca |
| Q28650286 | Morphological and population genomic evidence that human faces have evolved to signal individual identity |
| Q37057166 | Mouse Models of NMNAT1-Leber Congenital Amaurosis (LCA9) Recapitulate Key Features of the Human Disease |
| Q57039988 | Multi-axial self-organization properties of mouse embryonic stem cells into gastruloids |
| Q27902345 | Multi-level meta-workflows: new concept for regularly occurring tasks in quantum chemistry |
| Q34597785 | Multiple influenza A (H3N2) mutations conferring resistance to neuraminidase inhibitors in a bone marrow transplant recipient |
| Q35993287 | MutSpec: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes. |
| Q37128670 | Mutation rates, spectra, and genome-wide distribution of spontaneous mutations in mismatch repair deficient yeast |
| Q30444518 | Mutations in KARS, encoding lysyl-tRNA synthetase, cause autosomal-recessive nonsyndromic hearing impairment DFNB89 |
| Q90370622 | Mutations in a Novel Cadherin Gene Associated with Bt Resistance in Helicoverpa zea |
| Q28258055 | Mutations in the NHEJ component XRCC4 cause primordial dwarfism |
| Q38783180 | Mycobacterium bovis BCG Interferes with miR-3619-5p Control of Cathepsin S in the Process of Autophagy |
| Q89500835 | Myoviridae phage PDX kills enteroaggregative Escherichia coli without human microbiome dysbiosis |
| Q35763834 | NCBI BLAST+ integrated into Galaxy. |
| Q28278914 | NGS analyses by visualization with Trackster |
| Q37458166 | Natural selection reduced diversity on human y chromosomes |
| Q34071155 | Negative correlation between expression level and evolutionary rate of long intergenic noncoding RNAs |
| Q51734245 | Neonatal exposure to hyperoxia leads to persistent disturbances in pulmonary histone signatures associated with NOS3 and STAT3 in a mouse model. |
| Q39297356 | Neonatal maternal separation stress elicits lasting DNA methylation changes in the hippocampus of stress-reactive Wistar Kyoto rats |
| Q57806417 | Network of GRAS transcription factors involved in the control of arbuscule development in Lotus japonicus |
| Q34941781 | Next generation sequencing analysis of nine Corynebacterium ulcerans isolates reveals zoonotic transmission and a novel putative diphtheria toxin-encoding pathogenicity island |
| Q33688575 | Next generation tools for genomic data generation, distribution, and visualization |
| Q51761085 | Next-Generation Sequencing Analysis of the Human TCRγδ+ T-Cell Repertoire Reveals Shifts in Vγ- and Vδ-Usage in Memory Populations upon Aging. |
| Q38978311 | Next-Generation Sequencing-Based Approaches for Mutation Mapping and Identification in Caenorhabditis elegans |
| Q35950446 | Next-generation genotyping of hypervariable loci in many individuals of a non-model species: technical and theoretical implications. |
| Q42330162 | Next-generation sequencing identifies major DNA methylation changes during progression of Ph+ chronic myeloid leukemia |
| Q64108799 | Next-generation sequencing-guided identification and reconstruction of antibody CDR combinations from phage selection outputs |
| Q35799615 | Next-generation-based targeted sequencing as an efficient tool for the study of the genetic background in Hirschsprung patients |
| Q35288509 | Nfkb1 activation by the E26 transformation-specific transcription factors PU.1 and Spi-B promotes Toll-like receptor-mediated splenic B cell proliferation. |
| Q34621976 | NightShift: NMR shift inference by general hybrid model training--a framework for NMR chemical shift prediction |
| Q35648966 | No evidence for Fabaceae Gametophytic self-incompatibility being determined by Rosaceae, Solanaceae, and Plantaginaceae S-RNase lineage genes |
| Q28601391 | Non-CG DNA methylation is a biomarker for assessing endodermal differentiation capacity in pluripotent stem cells |
| Q51019461 | Novel Androgen Receptor Coregulator GRHL2 Exerts Both Oncogenic and Antimetastatic Functions in Prostate Cancer. |
| Q35686982 | Novel Degenerate PCR Method for Whole-Genome Amplification Applied to Peru Margin (ODP Leg 201) Subsurface Samples |
| Q36446199 | Novel roles for KLF1 in erythropoiesis revealed by mRNA-seq |
| Q63565679 | Obesity-associated inflammation promotes angiogenesis and breast cancer via angiopoietin-like 4 |
| Q61805925 | One tool to find them all: a case of data integration and querying in a distributed LIMS platform |
| Q34322090 | OpenHelix: bioinformatics education outside of a different box |
| Q39303444 | Organic nitrogen rearranges both structure and activity of the soil-borne microbial seedbank. |
| Q34085622 | PBX1 genomic pioneer function drives ERα signaling underlying progression in breast cancer. |
| Q35053478 | PD5: a general purpose library for primer design software. |
| Q34532804 | PFunkel: efficient, expansive, user-defined mutagenesis. |
| Q34242994 | PHYTOCHROME C is an essential light receptor for photoperiodic flowering in the temperate grass, Brachypodium distachyon |
| Q91473584 | PIPE-T: a new Galaxy tool for the analysis of RT-qPCR expression data |
| Q42320743 | Paf1 Has Distinct Roles in Transcription Elongation and Differential Transcript Fate |
| Q28708794 | Parallel evolutionary dynamics of adaptive diversification in Escherichia coli |
| Q35195589 | Parallel faster-X evolution of gene expression and protein sequences in Drosophila: beyond differences in expression properties and protein interactions |
| Q34998159 | Paternal X inactivation does not correlate with X chromosome evolutionary strata in marsupials |
| Q36312190 | Peptidomic and transcriptomic profiling of four distinct spider venoms |
| Q40322671 | PerC Manipulates Metabolism and Surface Antigens in Enteropathogenic Escherichia coli |
| Q28607149 | Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondrial transcription |
| Q38735065 | Pluripotency-related, valproic acid (VPA)-induced genome-wide histone H3 lysine 9 (H3K9) acetylation patterns in embryonic stem cells |
| Q52535453 | Pollination implications of the diverse diet of tropical nectar-feeding bats roosting in an urban cave. |
| Q35631187 | PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits |
| Q56981739 | Polymorphic NumtS trace human population relationships |
| Q28547754 | Porphyromonas gingivalis Type IX Secretion Substrates Are Cleaved and Modified by a Sortase-Like Mechanism |
| Q21563477 | Practical guidelines for the comprehensive analysis of ChIP-seq data |
| Q26767338 | Pre-early functions of bacteriophage T5 and its relatives |
| Q33844997 | Preparing DNA libraries for multiplexed paired-end deep sequencing for Illumina GA sequencers |
| Q34247976 | Primates and mouse NumtS in the UCSC Genome Browser |
| Q31038696 | Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011. |
| Q90029329 | Programmed genome rearrangements in Oxytricha produce transcriptionally active extrachromosomal circular DNA |
| Q28649512 | Proliferation of endogenous retroviruses in the early stages of a host germ line invasion |
| Q36008871 | Pronounced and extensive microtubule defects in a Saccharomyces cerevisiae DIS3 mutant. |
| Q31041085 | Proteome Scale-Protein Turnover Analysis Using High Resolution Mass Spectrometric Data from Stable-Isotope Labeled Plants. |
| Q35884862 | Proteome-wide Identification of Novel Ceramide-binding Proteins by Yeast Surface cDNA Display and Deep Sequencing |
| Q47186210 | Proteomic View of the Crosstalk between Lactobacillus mucosae and Intestinal Epithelial Cells in Co-culture Revealed by Q Exactive-Based Quantitative Proteomics |
| Q36705958 | Pseudo-De Novo Assembly and Analysis of Unmapped Genome Sequence Reads in Wild Zebrafish Reveal Novel Gene Content |
| Q42115496 | Putting epigenome comparison into practice |
| Q35653764 | RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application |
| Q61814916 | RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes |
| Q40067139 | RNA Sequencing of Murine Norovirus-Infected Cells Reveals Transcriptional Alteration of Genes Important to Viral Recognition and Antigen Presentation |
| Q39399577 | RNA synthesis by the brome mosaic virus RNA-dependent RNA polymerase in human cells reveals requirements for de novo initiation and protein-protein interaction |
| Q35232930 | RNA-Seq analysis reveals a six-gene SoxR regulon in Streptomyces coelicolor |
| Q28684802 | RNA-seq analysis of single bovine blastocysts |
| Q36732466 | RNA-seq-based mapping and candidate identification of mutations from forward genetic screens |
| Q39174680 | RNAi-mediated endogene silencing in strawberry fruit: detection of primary and secondary siRNAs by deep sequencing. |
| Q27322512 | RSR-2, the Caenorhabditis elegans ortholog of human spliceosomal component SRm300/SRRM2, regulates development by influencing the transcriptional machinery |
| Q36960668 | RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses |
| Q35618848 | Rapid and efficient human mutation detection using a bench-top next-generation DNA sequencer |
| Q30870516 | Rapid evaluation and quality control of next generation sequencing data with FaQCs. |
| Q46465136 | Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing. |
| Q30447155 | Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing |
| Q36272490 | Rapid start-up of nitrifying MBBRs at low temperatures: nitrification, biofilm response and microbiome analysis |
| Q51102391 | Rare germline copy number deletions of likely functional importance are implicated in endometrial cancer predisposition |
| Q38482790 | Rates of evolution of hominoid seminal proteins are correlated with function and expression, rather than mating system |
| Q41959212 | Recognition memory-induced gene expression in the perirhinal cortex: A transcriptomic analysis |
| Q27851991 | Recurrent SETBP1 mutations in atypical chronic myeloid leukemia |
| Q28830094 | Recurrent evolution of host and vector association in bacteria of the Borrelia burgdorferi sensu lato species complex |
| Q35116209 | Redefining the human oral mycobiome with improved practices in amplicon-based taxonomy: discovery of Malassezia as a prominent commensal |
| Q36414237 | Reduced infectivity of adenovirus type 5 particles and degradation of entering viral genomes associated with incomplete processing of the preterminal protein |
| Q38558011 | Reflection on Molecular Approaches Influencing State-of-the-Art Bioremediation Design: Culturing to Microbial Community Fingerprinting to Omics |
| Q38324240 | Regulation of alternative splicing by the circadian clock and food related cues |
| Q34588437 | Regulation of alternative splicing by the core spliceosomal machinery |
| Q44576507 | Relationship between Gingival Crevicular Fluid Microbiota and Cytokine Profile in Periodontal Host Homeostasis |
| Q33741138 | Removing bias against short sequences enables northern blotting to better complement RNA-seq for the study of small RNAs |
| Q36307373 | Removing the needle from the haystack: Enrichment of Wolbachia endosymbiont transcripts from host nematode RNA by Cappable-seq™. |
| Q36197536 | Repression by H-NS of genes required for the biosynthesis of the Vibrio cholerae biofilm matrix is modulated by the second messenger cyclic diguanylic acid |
| Q35763503 | ReproPhylo: An Environment for Reproducible Phylogenomics |
| Q36461896 | Reproducible features of small RNAs in C. elegans reveal NU RNAs and provide insights into 22G RNAs and 26G RNAs |
| Q37207611 | Research resource: progesterone receptor targetome underlying mammary gland branching morphogenesis |
| Q37604333 | Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations |
| Q37262010 | Reverse Transcription Errors and RNA-DNA Differences at Short Tandem Repeats |
| Q30857788 | Review of current methods, applications, and data management for the bioinformatics analysis of whole exome sequencing |
| Q58782835 | Riluzole reduces amyloid beta pathology, improves memory, and restores gene expression changes in a transgenic mouse model of early-onset Alzheimer's disease |
| Q36088542 | RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics |
| Q35802055 | Runs of homozygosity reveal signatures of positive selection for reproduction traits in breed and non-breed horses |
| Q31106793 | SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data |
| Q27313564 | SIV genome-wide pyrosequencing provides a comprehensive and unbiased view of variation within and outside CD8 T lymphocyte epitopes |
| Q61807225 | SMAGEXP: a galaxy tool suite for transcriptomics data meta-analysis |
| Q34540539 | SNP detection from de novo transcriptome sequencing in the bivalve Macoma balthica: marker development for evolutionary studies |
| Q35810285 | SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations. |
| Q34535082 | SOLiD-SAGE of endophyte-infected red fescue reveals numerous effects on host transcriptome and an abundance of highly expressed fungal secreted proteins |
| Q37366527 | STAT3 targets suggest mechanisms of aggressive tumorigenesis in diffuse large B-cell lymphoma |
| Q64085619 | SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines |
| Q37157416 | Segmenting the human genome based on states of neutral genetic divergence |
| Q45325336 | Selection for avian leukosis virus integration sites determines the clonal progression of B-cell lymphomas |
| Q35761876 | Selective Sweeps and Parallel Pathoadaptation Drive Pseudomonas aeruginosa Evolution in the Cystic Fibrosis Lung |
| Q24607867 | Selective regulation of lymphopoiesis and leukemogenesis by individual zinc fingers of Ikaros |
| Q38696935 | Sequence-specific DNA binding by MYC/MAX to low-affinity non-E-box motifs. |
| Q28730952 | Sequencing our way towards understanding global eukaryotic biodiversity |
| Q36215010 | Serological and Virological Evidence of Crimean-Congo Haemorrhagic Fever Virus Circulation in the Human Population of Borno State, Northeastern Nigeria. |
| Q33883898 | Shifts in the bacterial community composition along deep soil profiles in monospecific and mixed stands of Eucalyptus grandis and Acacia mangium. |
| Q38809600 | Short DNA Hairpins Compromise Recombinant Adeno-Associated Virus Genome Homogeneity. |
| Q36685774 | Short-Term Dynamics of North Sea Bacterioplankton-Dissolved Organic Matter Coherence on Molecular Level |
| Q34981808 | Signatures of rapid evolution in urban and rural transcriptomes of white-footed mice (Peromyscus leucopus) in the New York metropolitan area |
| Q42233195 | Similar recombination-activating gene (RAG) mutations result in similar immunobiological effects but in different clinical phenotypes |
| Q28710245 | Single-nucleotide polymorphisms reveal patterns of allele sharing across the species boundary between rhesus (Macaca mulatta) and cynomolgus (M. fascicularis) macaques |
| Q36889612 | Sir2/Sirt1 Links Acute Inebriation to Presynaptic Changes and the Development of Alcohol Tolerance, Preference, and Reward |
| Q35935461 | Small RNA Profiling in Dengue Virus 2-Infected Aedes Mosquito Cells Reveals Viral piRNAs and Novel Host miRNAs. |
| Q34394442 | Small interfering RNA-producing loci in the ancient parasitic eukaryote Trypanosoma brucei |
| Q34421080 | Smelt was the likely beneficiary of an antifreeze gene laterally transferred between fishes |
| Q35772860 | Social Regulation of Gene Expression in Threespine Sticklebacks |
| Q43030207 | Soda pans of the Pannonian steppe harbor unique bacterial communities adapted to multiple extreme conditions |
| Q42075142 | Some phenotype association tools in Galaxy: looking for disease SNPs in a full genome |
| Q57104956 | Spatiotemporal and demographic variation in the diet of New Zealand lesser short-tailed bats () |
| Q36155435 | Specific CD8+ T cell responses correlate with control of simian immunodeficiency virus replication in Mauritian cynomolgus macaques |
| Q48020178 | Specific Inhibition of the Bifunctional Farnesyl/Geranylgeranyl Diphosphate Synthase in Malaria Parasites via a New Small-Molecule Binding Site |
| Q46349617 | Specificity traits consistent with legume-rhizobia coevolution displayed by Ensifer meliloti rhizosphere colonization |
| Q46576979 | Spectral classification of short numerical exon and intron sequences |
| Q36932889 | Splicing kinetics and transcript release from the chromatin compartment limit the rate of Lipid A-induced gene expression |
| Q36910578 | Stool-based biomarkers of interstitial cystitis/bladder pain syndrome |
| Q36877024 | Strand-Specific RNA-Seq Provides Greater Resolution of Transcriptome Profiling. |
| Q40095881 | Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat. |
| Q55543246 | Stream acidification and reduced aquatic prey availability are associated with dietary shifts in an obligate riparian Neotropical migratory songbird. |
| Q47548145 | Streamlined ex vivo and in vivo genome editing in mouse embryos using recombinant adeno-associated viruses. |
| Q35888854 | Structural bias in T4 RNA ligase-mediated 3'-adapter ligation |
| Q54978872 | Structure and Function of the Transmembrane Domain of NsaS, an Antibiotic Sensing Histidine Kinase in Staphylococcus aureus. |
| Q41980729 | Structure of the CRISPR interference complex CSM reveals key similarities with cascade |
| Q46067109 | Summary of talks and papers at ISCB-Asia/SCCG 2012. |
| Q47130626 | Sustained activation of the AKT/mTOR and MAP kinase pathways mediate resistance to the Src inhibitor, dasatinib, in thyroid cancer. |
| Q58605203 | SyNDI: synchronous network data integration framework |
| Q35118594 | Synergistic and antagonistic interplay between myostatin gene expression and physical activity levels on gene expression patterns in triceps Brachii muscles of C57/BL6 mice |
| Q34746460 | Systematic identification and quantification of phase variation in commensal and pathogenic Escherichia coli |
| Q35834802 | T cell deficiency in spinal cord injury: altered locomotor recovery and whole-genome transcriptional analysis. |
| Q37326100 | TP53 gene mutation analysis in chronic lymphocytic leukemia by nanopore MinION sequencing |
| Q34270708 | Tangram: a comprehensive toolbox for mobile element insertion detection |
| Q40547402 | Targeted RNA-Seq profiling of splicing pattern in the DMD gene: exons are mostly constitutively spliced in human skeletal muscle |
| Q47841428 | Targeted deletion of a 170 kb cluster of LINE1 repeats: implications for regional control |
| Q52683959 | Targeting AR Variant-Coactivator Interactions to Exploit Prostate Cancer Vulnerabilities. |
| Q36439781 | Targeting of >1.5 Mb of human DNA into the mouse X chromosome reveals presence of cis-acting regulators of epigenetic silencing |
| Q91638141 | Targeting the BRD4-HOXB13 Coregulated Transcriptional Networks with Bromodomain-Kinase Inhibitors to Suppress Metastatic Castration-Resistant Prostate Cancer |
| Q44832215 | Technical challenges in metatranscriptomic studies applied to the bacterial communities of freshwater ecosystems |
| Q35228864 | Temporal transcriptome analysis of the chicken embryo yolk sac |
| Q34426620 | Tethering of the conserved piggyBac transposase fusion protein CSB-PGBD3 to chromosomal AP-1 proteins regulates expression of nearby genes in humans. |
| Q30405503 | The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications |
| Q33797000 | The Cavβ1a subunit regulates gene expression and suppresses myogenin in muscle progenitor cells |
| Q41327267 | The Drosophila Duox maturation factor is a key component of a positive feedback loop that sustains regeneration signaling. |
| Q35042495 | The Drosophila early ovarian transcriptome provides insight to the molecular causes of recombination rate variation across genomes |
| Q35883973 | The Effect of In Vitro Cultivation on the Transcriptome of Adult Brugia malayi |
| Q28553525 | The Effects of Ivermectin on Brugia malayi Females In Vitro: A Transcriptomic Approach |
| Q58070318 | The Essential Components of a Successful Galaxy Service |
| Q37348855 | The Ets transcription factor EHF as a regulator of cornea epithelial cell identity |
| Q36453042 | The Eucalyptus grandis NBS-LRR Gene Family: Physical Clustering and Expression Hotspots. |
| Q34524689 | The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update |
| Q37025677 | The Genetic Program of Pancreatic β-Cell Replication In Vivo |
| Q42778214 | The Impacts of Genome-wide Analyses on our Understanding of Human Herpesvirus Diversity and Evolution. |
| Q35488562 | The MET gene is a common integration target in avian leukosis virus subgroup J-induced chicken hemangiomas |
| Q28602228 | The Mouse Solitary Odorant Receptor Gene Promoters as Models for the Study of Odorant Receptor Gene Choice |
| Q36809538 | The Myb-p300-CREB axis modulates intestine homeostasis, radiosensitivity and tumorigenesis |
| Q34456748 | The Pancreatic Expression database: 2011 update |
| Q36689975 | The Pokeweed Leaf mRNA Transcriptome and Its Regulation by Jasmonic Acid |
| Q34143021 | The RNA-binding protein hnRNPA2 regulates β-catenin protein expression and is overexpressed in prostate cancer. |
| Q35810134 | The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community. |
| Q35630951 | The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons |
| Q55070232 | The Transcriptional Regulator TFB-RF1 Activates Transcription of a Putative ABC Transporter in Pyrococcus furiosus. |
| Q35253526 | The UCSC Cancer Genomics Browser: update 2015 |
| Q57306438 | The UCSC Genome Browser |
| Q29303030 | The amino acid composition of proteins from anaerobic halophilic bacteria of the order Halanaerobiales |
| Q34143940 | The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes |
| Q35976881 | The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp |
| Q36427004 | The decrease in histone methyltransferase EZH2 in response to fluid shear stress alters endothelial gene expression and promotes quiescence |
| Q46245365 | The effects of pastoral intensification on the feeding interactions of generalist predators in streams. |
| Q35486616 | The essential Schizosaccharomyces pombe Pfh1 DNA helicase promotes fork movement past G-quadruplex motifs to prevent DNA damage |
| Q35092095 | The evidence for increased L1 activity in the site of human adult brain neurogenesis. |
| Q28651512 | The evolutionary fate of the horizontally transferred agrobacterial mikimopine synthase gene in the genera Nicotiana and Linaria |
| Q41965408 | The flagellar set Fla2 in Rhodobacter sphaeroides is controlled by the CckA pathway and is repressed by organic acids and the expression of Fla1. |
| Q92593160 | The genomic landscape of estrogen receptor α binding sites in mouse mammary gland |
| Q33628932 | The glutamate/cystine xCT antiporter antagonizes glutamine metabolism and reduces nutrient flexibility |
| Q33637319 | The highly buffered Arabidopsis immune signaling network conceals the functions of its components |
| Q41055909 | The human papillomavirus (HPV) E7 protein antagonises an Imiquimod-induced inflammatory pathway in primary human keratinocytes |
| Q49868272 | The microbiome in PTEN hamartoma tumor syndrome |
| Q35021853 | The mitochondrial RNA landscape of Saccharomyces cerevisiae |
| Q33691022 | The multiplicity of alternative splicing decisions in Caenorhabditis elegans is linked to specific intronic regulatory motifs and minisatellites |
| Q28818366 | The rearranged mitochondrial genome of Leptopilina boulardi (Hymenoptera: Figitidae), a parasitoid wasp of Drosophila |
| Q37181184 | The severity of hereditary porphyria is modulated by the porphyrin exporter and Lan antigen ABCB6. |
| Q34123744 | The utility of PacBio circular consensus sequencing for characterizing complex gene families in non-model organisms |
| Q38917975 | The within-host dynamics of infection in trans-generationally primed flour beetles |
| Q27936820 | The yeast Snt2 protein coordinates the transcriptional response to hydrogen peroxide-mediated oxidative stress |
| Q21131388 | Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon |
| Q38656006 | Time to Spread Your Wings: A Review of the Avian Ancient DNA Field |
| Q35838815 | Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont |
| Q34799185 | Tool for rapid annotation of microbial SNPs (TRAMS): a simple program for rapid annotation of genomic variation in prokaryotes. |
| Q30363613 | Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow |
| Q37440490 | Towards agile large-scale predictive modelling in drug discovery with flow-based programming design principles |
| Q94335553 | Towards reproducible computational drug discovery |
| Q34487014 | ToxDBScan: Large-scale similarity screening of toxicological databases for drug candidates |
| Q37003094 | Transcription start site evolution in Drosophila. |
| Q37303724 | Transcriptional Fingerprint of Hypomyelination in Zfp191null and Shiverer (Mbpshi) Mice |
| Q35121971 | Transcriptome analysis of cyst formation in Rhodospirillum centenum reveals large global changes in expression during cyst development |
| Q48465555 | Transcriptome analysis of grey and white matter cortical tissue in multiple system atrophy |
| Q35519403 | Transcriptome and hormone profiling reveals Eucalyptus grandis defence responses against Chrysoporthe austroafricana |
| Q36619854 | Transcriptome-wide expansion of non-coding regulatory switches: evidence from co-occurrence of Alu exonization, antisense and editing |
| Q36167566 | Transcriptomic Changes in Zebrafish Embryos and Larvae Following Benzo[a]pyrene Exposure |
| Q28486092 | Transcriptomic study reveals widespread spliced leader trans-splicing, short 5'-UTRs and potential complex carbon fixation mechanisms in the euglenoid Alga Eutreptiella sp |
| Q38764222 | Transferrin receptor mRNA interactions contributing to iron homeostasis |
| Q44877313 | Transgenerational effects of Bisphenol A on gene expression and DNA methylation of imprinted genes in brain. |
| Q36247396 | Transient In Vivo Resistance Mechanisms of Burkholderia pseudomallei to Ceftazidime and Molecular Markers for Monitoring Treatment Response |
| Q30384862 | Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC). |
| Q34699808 | Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs |
| Q37445042 | Transposable elements become active and mobile in the genomes of aging mammalian somatic tissues |
| Q42775603 | Treatment of potato tubers with the synthetic cytokinin 1-(α-ethylbenzyl)-3-nitroguanidine results in rapid termination of endodormancy and induction of transcripts associated with cell proliferation and growth. |
| Q28648484 | Trends in IT Innovation to Build a Next Generation Bioinformatics Solution to Manage and Analyse Biological Big Data Produced by NGS Technologies |
| Q36760165 | Trivalent live attenuated influenza-simian immunodeficiency virus vaccines: efficacy and evolution of cytotoxic T lymphocyte escape in macaques |
| Q37327689 | Two-stage microbial community experimental design |
| Q37484911 | Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs |
| Q34367478 | Ultra-high resolution HLA genotyping and allele discovery by highly multiplexed cDNA amplicon pyrosequencing |
| Q36970890 | Understanding barriers to Borrelia burgdorferi dissemination during infection using massively parallel sequencing |
| Q28534652 | Unique transcriptome patterns of the white and grey matter corroborate structural and functional heterogeneity in the human frontal lobe |
| Q35618038 | UrQt: an efficient software for the Unsupervised Quality trimming of NGS data. |
| Q34390623 | Use of allele-specific FAIRE to determine functional regulatory polymorphism using large-scale genotyping arrays |
| Q31159695 | Use of application containers and workflows for genomic data analysis |
| Q28246542 | Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations |
| Q34038636 | Using RNA-seq and targeted nucleases to identify mechanisms of drug resistance in acute myeloid leukemia |
| Q48247099 | Using bio.tools to generate and annotate workbench tool descriptions. |
| Q28277397 | Using galaxy to perform large-scale interactive data analyses |
| Q38167615 | Using genetic findings in autism for the development of new pharmaceutical compounds. |
| Q34630150 | Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms |
| Q36216675 | VDR regulation of microRNA differs across prostate cell models suggesting extremely flexible control of transcription |
| Q60045206 | VarGenius executes cohort-level DNA-seq variant calling and annotation and allows to manage the resulting data through a PostgreSQL database |
| Q31119209 | Variant detection and runs of homozygosity in next generation sequencing data elucidate the genetic background of Lundehund syndrome |
| Q30865154 | VariantDB: a flexible annotation and filtering portal for next generation sequencing data |
| Q38911800 | Variation in Biological Soil Crust Bacterial Abundance and Diversity as a Function of Climate in Cold Steppe Ecosystems in the Intermountain West, USA. |
| Q36262823 | Viral variants that initiate and drive maturation of V1V2-directed HIV-1 broadly neutralizing antibodies |
| Q37715451 | Vitamin D Deficiency Is Associated With Increased Risk of Non-alcoholic Steatohepatitis in Adults With Non-alcoholic Fatty Liver Disease: Possible Role for MAPK and NF-κB? |
| Q28292552 | Web-based visual analysis for high-throughput genomics |
| Q36079032 | Where next for the reproducibility agenda in computational biology? |
| Q35511058 | Whole exome sequencing of a single osteosarcoma case--integrative analysis with whole transcriptome RNA-seq data. |
| Q47595282 | Whole genome sequencing identifies influenza A H3N2 transmission and offers superior resolution to classical typing methods |
| Q33640755 | Whole genome sequencing identifies missense mutation in MTBP in Shar-Pei affected with Autoinflammatory Disease (SPAID) |
| Q47660195 | Whole-genome sequence analysis shows that two endemic species of North American wolf are admixtures of the coyote and gray wolf |
| Q42320445 | Whole-genome sequencing investigation of animal-skin-drum-associated UK anthrax cases reveals evidence of mixed populations and relatedness to a US case |
| Q36002387 | Why weight? Modelling sample and observational level variability improves power in RNA-seq analyses |
| Q28652843 | Widespread intron retention in mammals functionally tunes transcriptomes |
| Q40696181 | Wolbachia from Drosophila incompta: just a hitchhiker shared by Drosophila in the New and Old World? |
| Q37306053 | Y-box protein 1 is required to sort microRNAs into exosomes in cells and in a cell-free reaction |
| Q41166217 | dNTP pools determine fork progression and origin usage under replication stress |
| Q35173843 | edgeR: a versatile tool for the analysis of shRNA-seq and CRISPR-Cas9 genetic screens |
| Q42728000 | gff2sequence, a new user friendly tool for the generation of genomic sequences |
| Q36932925 | hnRNP A1 and secondary structure coordinate alternative splicing of Mag. |
| Q34185686 | iCanPlot: visual exploration of high-throughput omics data using interactive Canvas plotting |
| Q42975797 | iReport: a generalised Galaxy solution for integrated experimental reporting. |
| Q31022008 | iSRAP - a one-touch research tool for rapid profiling of small RNA-seq data. |
| Q30648830 | kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic data sets |
| Q30922542 | medplot: a web application for dynamic summary and analysis of longitudinal medical data based on R. |
| Q41358715 | miRT: a database of validated transcription start sites of human microRNAs |
| Q34154113 | msCompare: a framework for quantitative analysis of label-free LC-MS data for comparative candidate biomarker studies |
| Q61447535 | p.E95K mutation in Indian hedgehog causing brachydactyly type A1 impairs IHH/Gli1 downstream transcriptional regulation |
| Q33605544 | rQuant.web: a tool for RNA-Seq-based transcript quantitation |
| Q34401341 | siSPOTR: a tool for designing highly specific and potent siRNAs for human and mouse. |
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