Using galaxy to perform large-scale interactive data analyses

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Using galaxy to perform large-scale interactive data analyses is …
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scholarly articleQ13442814

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P356DOI10.1002/0471250953.BI1005S19
P3181OpenCitations bibliographic resource ID4068034
P932PMC publication ID3418382
P698PubMed publication ID18428782
P5875ResearchGate publication ID5423658

P50authorAnton NekrutenkoQ30004030
James TaylorQ30362443
P2093author name stringIan Schenck
Dan Blankenberg
P2860cites workGalaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciencesQ21092859
Ultrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
Model-based analysis of ChIP-Seq (MACS)Q21183902
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteinsQ24558592
dbSNP: the NCBI database of genetic variationQ24608672
MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental dataQ24611130
ENCODE whole-genome data in the UCSC genome browser (2011 update)Q24616384
CTCF: master weaver of the genomeQ24621388
The UCSC Genome Browser database: update 2011Q24625811
Entrez Gene: gene-centered information at NCBIQ24793761
The UCSC Archaeal Genome BrowserQ25256865
The Sequence Alignment/Map format and SAMtoolsQ27860966
The UCSC Genome Browser DatabaseQ27861125
Making whole genome multiple alignments usable for biologistsQ28243703
Galaxy: a web-based genome analysis tool for experimentalistsQ28270252
Manipulation of FASTQ data with GalaxyQ28285724
A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendlyQ28306159
Galaxy: a platform for interactive large-scale genome analysisQ29547494
The UCSC Table Browser data retrieval toolQ29614432
Ensembl 2004Q29614433
ChIP-seq: advantages and challenges of a maturing technologyQ29615336
ENCODE whole-genome data in the UCSC Genome BrowserQ33516102
Computation for ChIP-seq and RNA-seq studiesQ33999125
Structured Query Language (SQL) fundamentalsQ43859168
Using the Ensembl Genome Server to Browse Genomic Sequence DataQ62609558
Searching NCBI Databases Using EntrezQ85048503
P407language of work or nameEnglishQ1860
P304page(s)Unit 10.5
P577publication date2007-09-01
P1433published inCurrent Protocols in BioinformaticsQ26842707
P1476titleUsing galaxy to perform large-scale interactive data analyses
P478volumeChapter 10

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