Minor class splicing shapes the zebrafish transcriptome during development

scientific article published on 10 February 2014

Minor class splicing shapes the zebrafish transcriptome during development is …
instance of (P31):
scholarly articleQ13442814

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P819ADS bibcode2014PNAS..111.3062M
P356DOI10.1073/PNAS.1305536111
P932PMC publication ID3939875
P698PubMed publication ID24516132
P5875ResearchGate publication ID260154489

P50authorDidier StainierQ36832398
Nicole CloonanQ37631503
Maria-Cristina KeightleyQ38359057
Sean GrimmondQ38802553
Joan K. HeathQ39639864
Heather VerkadeQ43198954
Elke A OberQ47451150
Graham J LieschkeQ55149847
P2093author name stringAndrew J Trotter
Karen Doggett
Sebastian Markmiller
Simon J Wilkins
Holly A Field
Yeliz Boglev
Rea M Lardelli
Annie Y Ng
P2860cites workThe human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosomeQ24293219
Mutations in U4atac snRNA, a component of the minor spliceosome, in the developmental disorder MOPD IQ24600454
A reappraisal of non-consensus mRNA splice sitesQ24630858
U12DB: a database of orthologous U12-type spliceosomal intronsQ24674116
Solution structure of the U11-48K CHHC zinc-finger domain that specifically binds the 5' splice site of U12-type intronsQ27653799
Linear models and empirical bayes methods for assessing differential expression in microarray experimentsQ27860758
The spliceosome: design principles of a dynamic RNP machineQ28131809
Requirement of U12 snRNA for in vivo splicing of a minor class of eukaryotic nuclear pre-mRNA intronsQ28275709
Terminal intron dinucleotide sequences do not distinguish between U2- and U12-dependent intronsQ28276093
The significant other: splicing by the minor spliceosomeQ28277280
Using galaxy to perform large-scale interactive data analysesQ28277397
A novel spliceosome containing U11, U12, and U5 snRNPs excises a minor class (AT-AC) intron in vitroQ28278096
Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC intronsQ28288885
Association of TALS developmental disorder with defect in minor splicing component U4atac snRNAQ28308281
Pre-mRNA splicing: awash in a sea of proteinsQ29547272
RNA processing and its regulation: global insights into biological networksQ29615182
MAP kinase signalling pathways in cancerQ29615542
Gene expression profiling of U12-type spliceosome mutant Drosophila reveals widespread changes in metabolic pathwaysQ33719236
X-MATE: a flexible system for mapping short read dataQ33788900
The U11/U12 snRNP 65K protein acts as a molecular bridge, binding the U12 snRNA and U11-59K proteinQ33947092
The splicing of U12-type introns can be a rate-limiting step in gene expressionQ34089608
The uniqueome: a mappability resource for short-tag sequencingQ34480065
Evolutionary fates and origins of U12-type introns.Q34487062
Subtle variations in Pten dose determine cancer susceptibilityQ35055350
Initial recognition of U12-dependent introns requires both U11/5' splice-site and U12/branchpoint interactionsQ35193277
Network of coregulated spliceosome components revealed by zebrafish mutant in recycling factor p110.Q35800268
Microcephalic osteodysplastic primordial dwarfism type I with biallelic mutations in the RNU4ATAC geneQ37277264
Rates of in situ transcription and splicing in large human genesQ37439783
Cancer therapy based on oncogene addictionQ37863612
Pre-mRNA splicing in disease and therapeuticsQ38028093
The U11-48K protein contacts the 5' splice site of U12-type introns and the U11-59K proteinQ38292661
An SMN-dependent U12 splicing event essential for motor circuit functionQ41856470
p53 isoform delta113p53 is a p53 target gene that antagonizes p53 apoptotic activity via BclxL activation in zebrafish.Q42151317
In vivo mutation of pre-mRNA processing factor 8 (Prpf8) affects transcript splicing, cell survival and myeloid differentiationQ42163950
Cloning and identification of a novel human RNPC3 gene that encodes a protein with two RRM domains and is expressed in the cell nucleusQ42620281
Minor introns are embedded molecular switches regulated by highly unstable U6atac snRNA.Q43067022
Mesodermal Wnt2b signalling positively regulates liver specification.Q45995605
Histone deacetylase 3 (hdac3) is specifically required for liver development in zebrafishQ46681961
Impaired minor tri-snRNP assembly generates differential splicing defects of U12-type introns in lymphoblasts derived from a type I SMA patientQ52605306
A homozygous mutation in RNU4ATAC as a cause of microcephalic osteodysplastic primordial dwarfism type I (MOPD I) with associated pigmentary disorder.Q55054998
An LKB1 AT-AC intron mutation causes Peutz-Jeghers syndrome via splicing at noncanonical cryptic splice sitesQ81168138
P4510describes a project that useslimmaQ112236343
P433issue8
P407language of work or nameEnglishQ1860
P921main subjectDanio rerioQ169444
transcriptomeQ252857
RNA-binding region (RNP1, RRM) containing 3Q50307656
P304page(s)3062-3067
P577publication date2014-02-10
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleMinor class splicing shapes the zebrafish transcriptome during development
P478volume111

Reverse relations

cites work (P2860)
Q37711600Aberrant splicing in maize rough endosperm3 reveals a conserved role for U12 splicing in eukaryotic multicellular development
Q35148150Aberrant splicing of U12-type introns is the hallmark of ZRSR2 mutant myelodysplastic syndrome
Q91670966An Integrated Model of Minor Intron Emergence and Conservation
Q64101011Differential isoform expression and alternative splicing in sex determination in mice
Q59798028Early developmental arrest and impaired gastrointestinal homeostasis in U12-dependent splicing-defective -deficient mice
Q38826832Evolutionarily conserved exon definition interactions with U11 snRNP mediate alternative splicing regulation on U11-48K and U11/U12-65K genes.
Q38831347Focusing the Spotlight on the Zebrafish Intestine to Illuminate Mechanisms of Colorectal Cancer
Q33791281Global analysis of the nuclear processing of transcripts with unspliced U12-type introns by the exosome
Q55039205Guided genetic screen to identify genes essential in the regeneration of hair cells and other tissues.
Q93018207Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns
Q41708646Minor splicing snRNAs are enriched in the developing mouse CNS and are crucial for survival of differentiating retinal neurons.
Q47279190Mutations in the U11/U12-65K protein associated with isolated growth hormone deficiency lead to structural destabilization and impaired binding of U12 snRNA.
Q92595145New insights into minor splicing-a transcriptomic analysis of cells derived from TALS patients
Q36191883Regulation of gene expression through inefficient splicing of U12-type introns
Q92084013Sex-Dimorphic Behavioral Alterations and Altered Neurogenesis in U12 Intron Splicing-Defective Zrsr1 Mutant Mice
Q33557335Spliceosomal protein eftud2 mutation leads to p53-dependent apoptosis in zebrafish neural progenitors
Q92116061Spliceosomopathies and neurocristopathies: two sides of the same coin?
Q35863369Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development
Q37130435Structural features important for the U12 snRNA binding and minor spliceosome assembly of Arabidopsis U11/U12-small nuclear ribonucleoproteins
Q36967640The Arabidopsis homolog of human minor spliceosomal protein U11-48K plays a crucial role in U12 intron splicing and plant development

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