MultiRankSeq: multiperspective approach for RNAseq differential expression analysis and quality control

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MultiRankSeq: multiperspective approach for RNAseq differential expression analysis and quality control is …
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scholarly articleQ13442814

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P356DOI10.1155/2014/248090
P932PMC publication ID4058234
P698PubMed publication ID24977143
P5875ResearchGate publication ID263549490

P50authorYan GuoQ85807918
Shilin ZhaoQ87631390
Yu ShyrQ87631392
Quanhu ShengQ42122644
P2093author name stringFei Ye
P2860cites workThe beginning of the end for microarrays?Q55050129
Use of Ranks in One-Criterion Variance AnalysisQ56481762
The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-SeqQ56978590
Differential expression analysis for sequence count dataQ21184103
Mapping and quantifying mammalian transcriptomes by RNA-SeqQ22122035
RNA-Seq: a revolutionary tool for transcriptomicsQ24596169
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiationQ24627354
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and CufflinksQ24633890
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arraysQ24655562
A comparison of statistical methods for detecting differentially expressed genes from RNA-seq dataQ26822918
Three-stage quality control strategies for DNA re-sequencing dataQ26864378
edgeR: a Bioconductor package for differential expression analysis of digital gene expression dataQ27860819
Stem cell transcriptome profiling via massive-scale mRNA sequencingQ28282295
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genomeQ29547458
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysisQ30567356
Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA dataQ30663449
Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limmaQ33259831
DEGseq: an R package for identifying differentially expressed genes from RNA-seq dataQ33512293
3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome AnalyzerQ33516040
baySeq: empirical Bayesian methods for identifying differential expression in sequence count dataQ33653650
Evaluation of read count based RNAseq analysis methodsQ33883932
Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq dataQ34086288
Removing technical variability in RNA-seq data using conditional quantile normalizationQ34143874
RNA-SeQC: RNA-seq metrics for quality control and process optimizationQ34249292
RSeQC: quality control of RNA-seq experimentsQ34284787
A comparison of methods for differential expression analysis of RNA-seq dataQ34333243
Efficient experimental design and analysis strategies for the detection of differential expression using RNA-SequencingQ34416621
Differential expression in RNA-seq: a matter of depthQ35581592
P275copyright licenseCreative Commons Attribution 3.0 UnportedQ14947546
P6216copyright statuscopyrightedQ50423863
P4510describes a project that useslimmaQ112236343
DESeq2Q113018293
edgeRQ113334690
P407language of work or nameEnglishQ1860
P921main subjectRNA sequencingQ2542347
quality controlQ827792
P304page(s)248090
P577publication date2014-05-27
P1433published inBioMed Research InternationalQ17509958
P1476titleMultiRankSeq: multiperspective approach for RNAseq differential expression analysis and quality control
P478volume2014

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cites work (P2860)
Q36610338A Distributed Network for Social Cognition Enriched for Oxytocin Receptors
Q39207634A Transcriptional Signature Identifies LKB1 Functional Status as a Novel Determinant of MEK Sensitivity in Lung Adenocarcinoma.
Q41647903A micro-RNA expression signature for human NAFLD progression
Q39710865A multi-model statistical approach for proteomic spectral count quantitation
Q34014397Advanced heat map and clustering analysis using heatmap3.
Q35703158Bile diversion to the distal small intestine has comparable metabolic benefits to bariatric surgery.
Q30355018Differential maturation of vesicular glutamate and GABA transporter expression in the mouse auditory forebrain during the first weeks of hearing
Q35917472Enhancer of Rudimentary Homolog Affects the Replication Stress Response through Regulation of RNA Processing
Q35540538Expression and functions of long noncoding RNAs during human T helper cell differentiation.
Q42776292Expression of long non-coding RNAs in autoimmunity and linkage to enhancer function and autoimmune disease risk genetic variants.
Q39431278Heterozygosity Ratio, a Robust Global Genomic Measure of Autozygosity and Its Association with Height and Disease Risk
Q30826773Kinesin-5 inhibitor resistance is driven by kinesin-12
Q36446804Long non-coding RNAs in innate and adaptive immunity
Q52803223MicroRNAs and tRNA-derived fragments predict the transformation of myelodysplastic syndromes to acute myeloid leukemia
Q47233980Mitochondrial DNA depletion by ethidium bromide decreases neuronal mitochondrial creatine kinase: Implications for striatal energy metabolism
Q31133867Multi-perspective quality control of Illumina RNA sequencing data analysis.
Q55025929Palmitic Acid Induces Müller Cell Inflammation that is Potentiated by Co-treatment with Glucose.
Q47808045Profiles of Long Noncoding RNAs in Human Naive and Memory T Cells
Q31138624RNA Sequencing of Formalin-Fixed, Paraffin-Embedded Specimens for Gene Expression Quantification and Data Mining
Q47267623RNA-Seq differential expression analysis: An extended review and a software tool
Q35548463RNA-Seq reveals a role for NFAT-signaling in human retinal microvascular endothelial cells treated with TNFα.
Q35645868RNA-seq identifies a role for the PPARβ/δ inverse agonist GSK0660 in the regulation of TNFα-induced cytokine signaling in retinal endothelial cells
Q40349181RNAseq by Total RNA Library Identifies Additional RNAs Compared to Poly(A) RNA Library
Q34421619RNAseqPS: A Web Tool for Estimating Sample Size and Power for RNAseq Experiment.
Q34229284Statistical strategies for microRNAseq batch effect reduction
Q38882986Strategies for processing and quality control of Illumina genotyping arrays.
Q47213893The Landscape of Small Non-Coding RNAs in Triple-Negative Breast Cancer
Q53692340The TLR4 Agonist Monophosphoryl Lipid A Drives Broad Resistance to Infection via Dynamic Reprogramming of Macrophage Metabolism.
Q30404856Transcriptional maturation of the mouse auditory forebrain.
Q35785942Transfer RNA detection by small RNA deep sequencing and disease association with myelodysplastic syndromes
Q92028260consensusDE: an R package for assessing consensus of multiple RNA-seq algorithms with RUV correction
Q38829474lncRNA expression in the auditory forebrain during postnatal development

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