Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome

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Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1021743271
P356DOI10.1186/S12864-015-2190-0
P3181OpenCitations bibliographic resource ID4088696
P932PMC publication ID4652430
P698PubMed publication ID26581393
P5875ResearchGate publication ID284185418

P50authorSébastien CarrereQ56860119
Perrine PortierQ57498758
Marie-Francoise JardinaudQ64097842
Laurent NoëlQ79338944
Marion Fischer-Le SauxQ90750412
Marie-Agnès JacquesQ92607482
Emmanuelle LauberQ104059726
Matthieu ArlatQ117248378
Endrick GuyQ117282769
Ralf KoebnikQ40478476
Nicolas DenancéQ46940303
Olivier PruvostQ55686518
Lionel GagnevinQ55686523
P2093author name stringBrice Roux
Stéphanie Bolot
Martine Lautier
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Retracted: Detection and Functional Characterization of a 215 Amino Acid N-Terminal Extension in the Xanthomonas Type III Effector XopDQ28476624
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Xanthomonas campestrisContains a Cluster ofhrpGenes Related to the LargerhrpCluster ofPseudomonas solanacearumQ33241847
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Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex.Q34390259
HrpG, a key hrp regulatory protein of Xanthomonas campestris pv. vesicatoria is homologous to two-component response regulators.Q34402712
How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?Q34523883
Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host rangeQ34939103
xopAC-triggered immunity against Xanthomonas depends on Arabidopsis receptor-like cytoplasmic kinase genes PBL2 and RIPK.Q34952022
Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.Q35274650
Expression and localization of HrpA1, a protein of Xanthomonas campestris pv. vesicatoria essential for pathogenicity and induction ofthe hypersensitive reactionQ35602596
High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistanceQ36094297
Genome sequence of Xanthomonas campestris JX, an industrially productive strain for Xanthan gum.Q36152744
Genome Sequence of Xanthomonas campestris pv. campestris Strain Xca5.Q36601186
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Next-generation annotation of prokaryotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011.Q37082004
High-resolution transcriptional analysis of the regulatory influence of cell-to-cell signalling reveals novel genes that contribute to Xanthomonas phytopathogenesisQ37098237
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Whole-genome expression profiling defines the HrpL regulon of Pseudomonas syringae pv. tomato DC3000, allows de novo reconstruction of the Hrp cis clement, and identifies novel coregulated genesQ38308046
Practical benefits of knowing the enemy: modern molecular tools for diagnosing the etiology of bacterial diseases and understanding the taxonomy and diversity of plant-pathogenic bacteriaQ38498992
From local surveys to global surveillance: three high-throughput genotyping methods for epidemiological monitoring of Xanthomonas citri pv. citri pathotypesQ38925330
Insertion sequence- and tandem repeat-based genotyping techniques for Xanthomonas citri pv. mangiferaeindicaeQ39370189
Draft genome of the xanthan producer Xanthomonas campestris NRRL B-1459 (ATCC 13951).Q41085973
Identification of novel Xanthomonas euvesicatoria type III effector proteins by a machine-learning approachQ41143271
Extracellular proteases from Xanthomonas campestris pv. campestris, the black rot pathogenQ42153248
Identification of a putative cognate sensor kinase for the two-component response regulator HrpG, a key regulator controlling the expression of the hrp genes in Xanthomonas campestris pv. campestrisQ42611667
Genome Sequences of Three Atypical Xanthomonas campestris pv. campestris Strains, CN14, CN15, and CN16.Q43095561
Xanthomonas campestris pv. campestris (cause of black rot of crucifers) in the genomic era is still a worldwide threat to brassica crops.Q43706485
Within-species flagellin polymorphism in Xanthomonas campestris pv campestris and its impact on elicitation of Arabidopsis FLAGELLIN SENSING2-dependent defensesQ44787283
The N terminus of bacterial elongation factor Tu elicits innate immunity in Arabidopsis plants.Q45153591
The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesisQ46730215
Inventory and functional analysis of the large Hrp regulon in Ralstonia solanacearum: identification of novel effector proteins translocated to plant host cells through the type III secretion systemQ47269339
Pathogenicity assays restrict the species Xanthomonas campestris into three pathovars and reveal nine races within X. campestris pv. campestrisQ56803729
P4510describes a project that usesDESeq2Q113018293
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectgenomicsQ222046
transcriptomeQ252857
Xanthomonas campestrisQ3753551
transcriptomicsQ28946449
P304page(s)975
P577publication date2015-11-18
P1433published inBMC GenomicsQ15765854
P1476titleGenomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome
P478volume16

Reverse relations

cites work (P2860)
Q92509787Analysis of HrpG regulons and HrpG-interacting proteins by ChIP-seq and affinity proteomics in Xanthomonas campestris
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Q38832595Bacterial pathogenesis of plants: future challenges from a microbial perspective: Challenges in Bacterial Molecular Plant Pathology.
Q28068755Behind the lines-actions of bacterial type III effector proteins in plant cells
Q60935308Conserved fungal effector suppresses PAMP-triggered immunity by targeting plant immune kinases
Q61445868Functional characterization and proteomic analysis of lolA in Xanthomonas campestris pv. campestris
Q64096134Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli
Q56838657Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean
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Q39575061Quantitative, Image-Based Phenotyping Methods Provide Insight into Spatial and Temporal Dimensions of Plant Disease
Q58657130Role of the acquisition of a type 3 secretion system in the emergence of novel pathogenic strains of Xanthomonas
Q40325556The role of type III effectors from Xanthomonas axonopodis pv. manihotis in virulence and suppression of plant immunity.
Q64078993Transcriptome Analysis Reveals Key Cold-Stress-Responsive Genes in Winter Rapeseed ( L.)
Q102388890Transcriptome analysis of Xanthomonas fragariae in strawberry leaves
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