From local surveys to global surveillance: three high-throughput genotyping methods for epidemiological monitoring of Xanthomonas citri pv. citri pathotypes

scientific article published on 16 December 2008

From local surveys to global surveillance: three high-throughput genotyping methods for epidemiological monitoring of Xanthomonas citri pv. citri pathotypes is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1128/AEM.02245-08
P932PMC publication ID2643580
P698PubMed publication ID19088309

P50authorSylvain BrisseQ28870498
Olivier PruvostQ55686518
Lionel GagnevinQ55686523
Sébastien BoutryQ56500624
Philippe JarneQ78366432
P2093author name stringFabien Guérin
Christian Vernière
Thi Ngoc Lan Bui
P2860cites workComparison of the genomes of two Xanthomonas pathogens with differing host specificitiesQ22122346
Microbial source tracking: current methodology and future directionsQ24537353
Inference of population structure using multilocus genotype dataQ24548114
AFLP: a new technique for DNA fingerprintingQ24620887
The neighbor-joining method: a new method for reconstructing phylogenetic treesQ25939010
Inference of population structure using multilocus genotype data: linked loci and correlated allele frequenciesQ26734731
List of new names and new combinations previously effectively, but not validly, publishedQ26827602
Arlequin (version 3.0): an integrated software package for population genetics data analysisQ27860830
Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversityQ28289683
Polyphasic characterization of xanthomonads pathogenic to members of the Anacardiaceae and their relatedness to species of XanthomonasQ29038363
A measure of population subdivision based on microsatellite allele frequencies.Q29547187
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an updateQ29547286
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation studyQ29547289
The detection of disease clustering and a generalized regression approachQ29547676
Inference of population structure using multilocus genotype data: dominant markers and null allelesQ29615942
eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing dataQ29617369
Genetic differentiation and estimation of gene flow from F-statistics under isolation by distanceQ29617983
How clonal are bacteria?Q29618572
genalex 6: genetic analysis in Excel. Population genetic software for teaching and researchQ29642132
Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment sizeQ30680835
Genetic diversity of citrus bacterial canker pathogens preserved in herbarium specimensQ30838390
Comparative and library epidemiological typing systems: outbreak investigations versus surveillance systemsQ32010131
Use of variable-number tandem-repeat typing to differentiate Mycobacterium tuberculosis Beijing family isolates from Hong Kong and comparison with IS6110 restriction fragment length polymorphism typing and spoligotypingQ33592587
Development of 14 minisatellite markers for the citrus canker bacterium, Xanthomonas citri pv. citriQ33896551
Pathogenicity islands and the evolution of microbesQ33920183
Role of genomic typing in taxonomy, evolutionary genetics, and microbial epidemiologyQ33975727
Discriminatory power and reproducibility of novel DNA typing methods for Mycobacterium tuberculosis complex strainsQ34143606
Microsatellites, from molecules to populations and backQ34159215
The estimation of population differentiation with microsatellite markers.Q34539422
Evaluation of the epidemiological relevance of variable-number tandem-repeat genotyping of Mycobacterium bovis and comparison of the method with IS6110 restriction fragment length polymorphism analysis and spoligotypingQ34719340
Molecular determinants of disease and resistance in interactions of Xanthomonas oryzae pv. oryzae and riceQ35005278
In planta horizontal transfer of a major pathogenicity effector geneQ35689935
Simple sequence repeats in prokaryotic genomesQ35850225
Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scalesQ35902516
Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria.Q36153028
Xanthomonas axonopodis pv. citri: factors affecting successful eradication of citrus cankerQ37766635
Polyphasic characterization of Xanthomonas axonopodis pv. allii associated with outbreaks of bacterial blight on three Allium species in the Mascarene archipelagoQ39355124
Genetic relationship among worldwide strains of Xanthomonas causing canker in citrus species and design of new primers for their identification by PCR.Q39639138
Experimental versus in silico fluorescent amplified fragment length polymorphism analysis of Mycobacterium tuberculosis: improved typing with an extended fragment rangeQ39695224
Ralstonia solanacearum strains from Martinique (French West Indies) exhibiting a new pathogenic potentialQ40004121
Genomic Relatedness of Xanthomonas campestris Strains Causing Diseases of Citrus.Q42125505
Ligation-mediated PCR, a fast and reliable technique for insertion sequence-based typing of Xanthomonas citri pv. citriQ44212340
Pathological Variations Within Xanthomonas campestris pv. mangiferaeindicae Support Its Separation Into Three Distinct Pathovars that Can Be Distinguished by Amplified Fragment Length PolymorphismQ44468061
Comparison of AFLP and rep-PCR genomic fingerprinting with DNA--DNA homology studies: Xanthomonas as a model systemQ45314468
AN EXACT TEST FOR POPULATION DIFFERENTIATION.Q52321368
Measures of divergence between populations and the effect of forces that reduce variability.Q52563351
Analysis of population genetic structure with RAPD markers.Q52882242
A comprehensive species to strain taxonomic framework for xanthomonas.Q54511272
Emerging pathogens: the epidemiology and evolution of species jumpsQ56783570
Predictive modelling of fluorescent AFLP: a new approach to the molecular epidemiology of E. coliQ74649250
Molecular typing of micro-organisms: at the centre of diagnostics, genomics and pathogenesis of infectious diseases?Q77517542
Emended classification of xanthomonad pathogens on citrusQ79446076
Bacterial avirulence genesQ79760388
All five host-range variants of Xanthomonas citri carry one pthA homolog with 17.5 repeats that determines pathogenicity on citrus, but none determine host-range variationQ80850785
Reclassification of Xanthomonas campestris pv. citri (ex Hasse 1915) Dye 1978 forms A, B/C/D, and E as X. smithii subsp. citri (ex Hasse) sp. nov. nom. rev. comb. nov., X. fuscans subsp. aurantifolii (ex Gabriel 1989) sp. nov. nom. rev. comb. nov.,Q81070416
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectepidemiologyQ133805
Xanthomonas citriQ15637477
P304page(s)1173-1184
P577publication date2008-12-16
P1433published inApplied and Environmental MicrobiologyQ4781593
P1476titleFrom local surveys to global surveillance: three high-throughput genotyping methods for epidemiological monitoring of Xanthomonas citri pv. citri pathotypes
P478volume75

Reverse relations

cites work (P2860)
Q28658820A MLVA genotyping scheme for global surveillance of the citrus pathogen Xanthomonas citri pv. citri suggests a worldwide geographical expansion of a single genetic lineage
Q64056831A new Multi Locus Variable Number of Tandem Repeat Analysis Scheme for epidemiological surveillance of Xanthomonas vasicola pv. musacearum, the plant pathogen causing bacterial wilt on banana and enset
Q91610742CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen Xanthomonas citri pv. citri
Q35877240Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges
Q92967000Deciphering how plant pathogenic bacteria disperse and meet: Molecular epidemiology of Xanthomonas citri pv. citri at microgeographic scales in a tropical area of Asiatic citrus canker endemicity
Q90582811Detection and identification of Xanthomonas pathotypes associated with citrus diseases using comparative genomics and multiplex PCR
Q35742453Development of a Multiple Loci Variable Number of Tandem Repeats Analysis (MLVA) to Unravel the Intra-Pathovar Structure of Pseudomonas syringae pv. actinidiae Populations Worldwide.
Q56839476Genetic structure analysis of strains causing citrus canker in Iran reveals the presence of two different lineages ofXanthomonas citripv.citripathotype A*
Q28607226Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome
Q35076766Highly polymorphic markers reveal the establishment of an invasive lineage of the citrus bacterial pathogen Xanthomonas citri pv. citri in its area of origin
Q35941147Housekeeping gene sequencing and multilocus variable-number tandem-repeat analysis to identify subpopulations within Pseudomonas syringae pv. maculicola and Pseudomonas syringae pv. tomato that correlate with host specificity
Q49166497Molecular Epidemiology of Bacterial Wilt in the Madagascar Highlands Caused by Andean (Phylotype IIB-1) and African (Phylotype III) Brown Rot Strains of the Ralstonia solanacearum Species Complex.
Q36145035Multilocus Variable Number of Tandem Repeat Analysis Reveals Multiple Introductions in Spain of Xanthomonas arboricola pv. pruni, the Causal Agent of Bacterial Spot Disease of Stone Fruits and Almond
Q34759502Multilocus variable-number-tandem-repeats analysis (MLVA) distinguishes a clonal complex of Clavibacter michiganensis subsp. michiganensis strains isolated from recent outbreaks of bacterial wilt and canker in Belgium
Q41515999Multiple Locus Variable number of tandem repeat Analysis: A molecular genotyping tool for Paenibacillus larvae
Q36033110Origin of the Outbreak in France of Pseudomonas syringae pv. actinidiae Biovar 3, the Causal Agent of Bacterial Canker of Kiwifruit, Revealed by a Multilocus Variable-Number Tandem-Repeat Analysis
Q42244895Phylogeography and population structure of the biologically invasive phytopathogen Erwinia amylovora inferred using minisatellites.
Q41479266Positive selection is the main driving force for evolution of citrus canker-causing Xanthomonas
Q47154190Scientific Opinion on the risk to plant health ofXanthomonas citripv.citriandXanthomonas citripv.aurantifoliifor the EU territory
Q42688950Variations in type III effector repertoires, pathological phenotypes and host range of Xanthomonas citri pv. citri pathotypes.

Search more.