Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.

scientific article

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision. is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1024596109
P356DOI10.1038/ISMEJ.2015.235
P932PMC publication ID4918442
P698PubMed publication ID26905627
P5875ResearchGate publication ID295844113

P50authorJizhong ZhouQ10921129
Karoline FaustQ57274131
Ye DengQ87348833
Jed A. FuhrmanQ87348835
Eric J. AlmQ88440801
Amanda BirminghamQ92172536
Zhenjiang Zech XuQ110853861
Luke K UrsellQ114414654
Rob KnightQ20657126
Catherine A. LozuponeQ21425018
Jeroen RaesQ50285889
Li XiaQ55816250
P2093author name stringFengzhu Sun
Jonathan Friedman
Will Van Treuren
Sophie Weiss
Jacob A Cram
P2860cites workA direct approach to false discovery ratesQ56622258
DETERMINATION OF THE COEFFICIENT OF CORRELATIONQ81204405
Differential expression analysis for sequence count dataQ21184103
Moving pictures of the human microbiomeQ21999542
Enterotypes of the human gut microbiomeQ24489818
Obesity alters gut microbial ecologyQ24531503
Gut flora metabolism of phosphatidylcholine promotes cardiovascular diseaseQ24601951
A core gut microbiome in obese and lean twinsQ24649648
Statistical significance for genomewide studiesQ24681264
The dynamic microbiomeQ27027596
More powerful procedures for multiple significance testingQ28255714
Microbial co-occurrence relationships in the human microbiomeQ28481283
Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2Q28742134
An Ordination of the Upland Forest Communities of Southern WisconsinQ29030695
Gut microbiota from twins discordant for obesity modulate metabolism in miceQ29614796
Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndromeQ29616853
Multiple Comparisons among MeansQ29998878
Inferring correlation networks from genomic survey dataQ30571637
Efficient statistical significance approximation for local similarity analysis of high-throughput time series dataQ30578400
Waste not, want not: why rarefying microbiome data is inadmissibleQ30793257
Differential abundance analysis for microbial marker-gene surveysQ33566352
A global network of coexisting microbes from environmental and whole-genome sequence dataQ33574443
The treatment-naive microbiome in new-onset Crohn's diseaseQ33762817
Detecting novel associations in large data setsQ34102548
Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel diseaseQ34241773
Molecular ecological network analyses.Q34286409
Microbial interactions: from networks to modelsQ34337828
The poultry-associated microbiome: network analysis and farm-to-fork characterizationsQ34611850
Human genetics shape the gut microbiome.Q34630305
Systematic review of intestinal microbiota transplantation (fecal bacteriotherapy) for recurrent Clostridium difficile infectionQ34633079
A meta-analysis of changes in bacterial and archaeal communities with timeQ34663033
Meta-analyses of studies of the human microbiotaQ34824829
Alterations in the gut microbiota associated with HIV-1 infectionQ34986967
Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal CaliforniaQ35135808
Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile.Q35163017
Marine bacterial, archaeal and protistan association networks reveal ecological linkages.Q35178353
Ocean plankton. Determinants of community structure in the global plankton interactomeQ35638943
Characterizing microbial communities through space and timeQ35850092
The emerging medical ecology of the human gut microbiomeQ36040651
Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbiontsQ36285425
Fundamentals of microbial community resistance and resilienceQ36476972
Deciphering microbial interactions and detecting keystone species with co-occurrence networksQ39923601
Microbial interactions within a cheese microbial community.Q41910737
Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factorsQ46053117
The Proof and Measurement of Association between Two ThingsQ50368932
P433issue7
P304page(s)1669-1681
P577publication date2016-02-23
P1433published inThe ISME JournalQ7741240
P1476titleCorrelation detection strategies in microbial data sets vary widely in sensitivity and precision
P478volume10

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cites work (P2860)
Q52355341A Lachnospiraceae-dominated bacterial signature in the fecal microbiota of HIV-infected individuals from Colombia, South America.
Q64070036A New Method to Correct for Habitat Filtering in Microbial Correlation Networks
Q94561694A Primer for Microbiome Time-Series Analysis
Q58052580A computational framework to integrate high-throughput ‘-omics’ datasets for the identification of potential mechanistic links
Q101574064A network-based approach to deciphering a dynamic microbiome's response to a subtle perturbation
Q91808470A sparse covarying unit that describes healthy and impaired human gut microbiota development
Q90134720Adenovirus infection is associated with altered gut microbial communities in a non-human primate
Q96685651Alterations of gut microbiota contribute to the progression of unruptured intracranial aneurysms
Q41474970Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing
Q46425387Archaea and bacteria mediate the effects of native species root loss on fungi during plant invasion
Q92437125Asgard archaea: Diversity, function, and evolutionary implications in a range of microbiomes
Q39520053Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children
Q92487103Association network analysis identifies enzymatic components of gut microbiota that significantly differ between colorectal cancer patients and healthy controls
Q91284328Association of sociodemographic factors and internet query data with pertussis infections in Shandong, China
Q56967312Astrovirus infections induce age-dependent dysbiosis in gut microbiomes of bats
Q90051219Bacterial and Eukaryotic Small-Subunit Amplicon Data Do Not Provide a Quantitative Picture of Microbial Communities, but They Are Reliable in the Context of Ecological Interpretations
Q60547176Best practices for analysing microbiomes
Q61443014Calour: an Interactive, Microbe-Centric Analysis Tool
Q90440559Can we predict keystones?
Q92732617Cervicovaginal Microbiome and Urine Metabolome Paired Analysis Reveals Niche Partitioning of the Microbiota in Patients with Human Papilloma Virus Infections
Q89037012Co-occurrence Networks Among Bacteria and Microbial Eukaryotes of Lake Baikal During a Spring Phytoplankton Bloom
Q37384237CoNet app: inference of biological association networks using Cytoscape.
Q38668200Cohesion: a method for quantifying the connectivity of microbial communities
Q89889603Coinfinder: detecting significant associations and dissociations in pangenomes
Q89635609Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations
Q64266798Competitive interaction with keystone taxa induced negative priming under biochar amendments
Q57810831Competitive lottery-based assembly of selected clades in the human gut microbiome
Q38604864Conservation of Species- and Trait-Based Modeling Network Interactions in Extremely Acidic Microbial Community Assembly
Q64109701Consistent bacterial selection by date palm root system across heterogeneous desert oasis agroecosystems
Q112284485Contrasting Effects of Local Environmental and Biogeographic Factors on the Composition and Structure of Bacterial Communities in Arid Monospecific Mangrove Soils
Q47729415Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming
Q92807870Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2018 Conference Workshops
Q92058461Defining and Evaluating Microbial Contributions to Metabolite Variation in Microbiome-Metabolome Association Studies
Q49445263Detection of stable community structures within gut microbiota co-occurrence networks from different human populations.
Q92822541Diatoms Are Selective Segregators in Global Ocean Planktonic Communities
Q92726018Difficulty in inferring microbial community structure based on co-occurrence network approaches
Q39028873Disentangling Interactions in the Microbiome: A Network Perspective
Q49685276Distribution of Archaeal Communities along the Coast of the Gulf of Finland and Their Response to Oil Contamination.
Q41918684Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics
Q90428153Ecological networks reveal contrasting patterns of bacterial and fungal communities in glacier-fed streams in Central Asia
Q64263748Effects of ursodeoxycholic acid on the gut microbiome and colorectal adenoma development
Q46375301Environmental Metabarcoding Reveals Contrasting Belowground and Aboveground Fungal Communities from Poplar at a Hg Phytomanagement Site.
Q97905194Environmental heterogeneity determines the ecological processes that govern bacterial metacommunity assembly in a floodplain river system
Q64075214Explore mediated co-varying dynamics in microbial community using integrated local similarity and liquid association analysis
Q37223239Extreme Dysbiosis of the Microbiome in Critical Illness
Q46456491Fire modifies the phylogenetic structure of soil bacterial co-occurrence networks
Q33646265From Vineyard Soil to Wine Fermentation: Microbiome Approximations to Explain the "terroir" Concept
Q47663201Functional Stability and Community Dynamics during Spring and Autumn Seasons Over 3 Years in Camargue Microbial Mats.
Q47702006Fundamental contradictions among observational and experimental estimates of non-trophic species interactions
Q57281301Geospatial variation in co-occurrence networks of nitrifying microbial guilds
Q91583846Glacial Runoff Promotes Deep Burial of Sulfur Cycling-Associated Microorganisms in Marine Sediments
Q47104491Grapevine rootstocks shape underground bacterial microbiome and networking but not potential functionality
Q91869147Graph Embedding Deep Learning Guides Microbial Biomarkers' Identification
Q57012017Gut metabolome meets microbiome: A methodological perspective to understand the relationship between host and microbe
Q98386045Gut microbial co-abundance networks show specificity in inflammatory bowel disease and obesity
Q89981433Gut microbial signatures associated with moxidectin treatment efficacy of Haemonchus contortus in infected goats
Q55188283Heterogeneity of interactions of microbial communities in regions of Taihu Lake with different nutrient loadings: A network analysis.
Q38924657High-resolution characterization of the human microbiome
Q93088907How sample heterogeneity can obscure the signal of microbial interactions
Q36314112How to make more out of community data? A conceptual framework and its implementation as models and software
Q60044488Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant
Q64093399Identifying Gut Microbiota Associated With Colorectal Cancer Using a Zero-Inflated Lognormal Model
Q52619003In vitro co-cultures of human gut bacterial species as predicted from co-occurrence network analysis.
Q58553925Inference of Significant Microbial Interactions From Longitudinal Metagenomics Data
Q57423229Inferring Metabolic Mechanisms of Interaction within a Defined Gut Microbiota
Q36306297Inferring interactions in complex microbial communities from nucleotide sequence data and environmental parameters
Q31162021Integrated metagenomic data analysis demonstrates that a loss of diversity in oral microbiota is associated with periodontitis
Q89495343Integrating Computational Methods to Investigate the Macroecology of Microbiomes
Q93010095Interactions between the gut microbiome and host gene regulation in cystic fibrosis
Q38863317Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies
Q90464216Intransitivity increases plant functional diversity by limiting dominance in drylands worldwide
Q52578588KDiamend: a package for detecting key drivers in a molecular ecological network of disease.
Q88778845Keystone taxa as drivers of microbiome structure and functioning
Q40464293Land scale biogeography of arsenic biotransformation genes in estuarine wetland.
Q50420625Large Blooms of Bacillales (Firmicutes) Underlie the Response to Wetting of Cyanobacterial Biocrusts at Various Stages of Maturity.
Q91106801Learning representations of microbe-metabolite interactions
Q57003547Limitations of Correlation-Based Inference in Complex Virus-Microbe Communities
Q89480933Linking belowground microbial network changes to different tolerance level towards Verticillium wilt of olive
Q94479646Logicome Profiler: Exhaustive detection of statistically significant logic relationships from comparative omics data
Q64257377Long-Term Temperature Stress in the Coral Model Aiptasia Supports the "Anna Karenina Principle" for Bacterial Microbiomes
Q92383029Longitudinal multi-omics of host-microbe dynamics in prediabetes
Q37228280MMinte: an application for predicting metabolic interactions among the microbial species in a community.
Q92423134Mapping the microbial interactome: Statistical and experimental approaches for microbiome network inference
Q33891018Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
Q64075169Meta-network: optimized species-species network analysis for microbial communities
Q61447420Metabolic Modeling of Human Gut Microbiota on a Genome Scale: An Overview
Q91740124Microbial Co-Occurrence Patterns and Keystone Species in the Gut Microbial Community of Mice in Response to Stress and Chondroitin Sulfate Disaccharide
Q91963067Microbial Community Analyses Associated with Nine Varieties of Wine Grape Carposphere Based on High-Throughput Sequencing
Q41550536Microbial communities with distinct denitrification potential in spruce and beech soils differing in nitrate leaching
Q46298670Microbial diversity in an intensively managed landscape is structured by landscape connectivity
Q46357278Microbial network, phylogenetic diversity and community membership in the active layer across a permafrost thaw gradient
Q47149781Microbiome Datasets Are Compositional: And This Is Not Optional.
Q89621056Microbiome Dynamics Associated With the Atacama Flowering Desert
Q38648247Microbiome and metabolome data integration provides insight into health and disease
Q52564634Microbiome of Total Versus Live Bacteria in the Gut of Rex Rabbits.
Q36064477Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes
Q92134921Modelling approaches for studying the microbiome
Q33775089Multigenerational Influences of the Fut2 Gene on the Dynamics of the Gut Microbiota in Mice
Q36200942Natural products as mediators of disease.
Q58115403Neonatal gut and respiratory microbiota: coordinated development through time and space
Q38866650Next-Generation Global Biomonitoring: Large-scale, Automated Reconstruction of Ecological Networks.
Q58376391Niche partitioning of a pathogenic microbiome driven by chemical gradients
Q92783846Oropharyngeal microbiome of a college population following a meningococcal disease outbreak
Q64100393Phosphorus source driving the soil microbial interactions and improving sugarcane development
Q58794476Phylogeny-corrected identification of microbial gene families relevant to human gut colonization
Q55284749Predicted Bacterial Interactions Affect in Vivo Microbial Colonization Dynamics in Nematostella.
Q92479377Progressive Microbial Community Networks with Incremental Organic Loading Rates Underlie Higher Anaerobic Digestion Performance
Q90043614Randomized Lasso Links Microbial Taxa with Aquatic Functional Groups Inferred from Flow Cytometry
Q64090222Rarity of microbial species: In search of reliable associations
Q47110624Recurrent patterns of microdiversity in a temperate coastal marine environment.
Q60914014Seabird and pinniped shape soil bacterial communities of their settlements in Cape Shirreff, Antarctica
Q92129126Soil Microbial Biogeography in a Changing World: Recent Advances and Future Perspectives
Q91199050Species-wide Metabolic Interaction Network for Understanding Natural Lignocellulose Digestion in Termite Gut Microbiota
Q64273712Strengthening Insights in Microbial Ecological Networks from Theory to Applications
Q92071362Strong Seasonality in Arctic Estuarine Microbial Food Webs
Q55011144Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience.
Q64107250Succession of Composition and Function of Soil Bacterial Communities During Key Rice Growth Stages
Q92132530The Computational Diet: A Review of Computational Methods Across Diet, Microbiome, and Health
Q55344452The queen's gut refines with age: longevity phenotypes in a social insect model.
Q46359327The response of archaeal species to seasonal variables in a subtropical aerated soil: insight into the low abundant methanogens
Q56349491The structure of plant spatial association networks is linked to plant diversity in global drylands
Q64133058The use of next generation sequencing for improving food safety: Translation into practice
Q59789868The valproic acid rat model of autism presents with gut bacterial dysbiosis similar to that in human autism
Q90523201Towards Quantitative Microbiome Community Profiling Using Internal Standards
Q57301623Transkingdom Networks: A Systems Biology Approach to Identify Causal Members of Host-Microbiota Interactions
Q61546644Trends in bacterial and fungal communities in ant nests observed with Terminal-Restriction Fragment Length Polymorphism (T-RFLP) and Next Generation Sequencing (NGS) techniques-validity and compatibility in ecological studies
Q92833529Untangling the dynamics of persistence and colonization in microbial communities
Q38794392Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond.
Q93116664Use and abuse of correlation analyses in microbial ecology
Q36369015Using null models to infer microbial co-occurrence networks.
Q57207779Variations of Bacterial Community Composition and Functions in an Estuary Reservoir during Spring and Summer Alternation
Q36250240Virus-host interactions and their roles in coral reef health and disease
Q57158683Viruses of Eukaryotic Algae: Diversity, Methods for Detection, and Future Directions
Q36367832gCoda: Conditional Dependence Network Inference for Compositional Data
Q89766436manta: a Clustering Algorithm for Weighted Ecological Networks

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