Rob Knight

New Zealand computational microbiologist

DBpedia resource is: http://dbpedia.org/resource/Rob_Knight_(biologist)

Abstract is: Rob Knight (born 1976 in Dunedin, New Zealand) is a professor at the University of California, San Diego and the co-founder of the . He is also a co-founder of the Earth Microbiome Project, and his lab's research involves the development of laboratory and computational techniques to characterize the microbiomes of humans, animals, and the environment. Knight completed a BSc in biochemistry at the University of Otago and a PhD in Ecology and Evolutionary Biology at Princeton University in 2001, where his thesis was "The Origin and Evolution of the Genetic Code." Until 2014, he was a professor at the University of Colorado – Boulder. He did an IAmA on Reddit and co-taught an online microbiome course on Coursera. He gave a TED Talk in 2014 on the role microbes play on our health. Later this idea was expanded into the book Follow Your Gut: The Enormous Impact of Tiny Microbes, written with science journalist and published by Simon & Schuster. In 2015, he received the Vilcek Prize for Creative Promise in Biomedical Science. Rob Knight has the prologue and a chapter dedicated to his spirit of exploration in a non-fiction, written for masses, science book ‘I Contain Multitudes’. The author Ed Yong highlights his visit to San Diego zoo with Knight where he swabs different animals to study the microbes collected. He explains the intriguing nature of the microorganisms and the way the affect development of life. The book was published in 2016.

Born 1976-01-01 in Dunedin (Q133073)

Rob Knight is …
instance of (P31):
humanQ5

External links are
P2456DBLP author ID18/2964
P6178Dimensions author ID016311745377.96
P646Freebase ID/m/0136zqsc
P8446Gateway to Research person IDF395DD6B-C28B-4622-AA07-A1BCB1AFD541
P227GND ID1081929022
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P244Library of Congress authority IDno2015074568
P6634LinkedIn personal profile IDrob-knight-65a1b5aa
P8189National Library of Israel J9U ID987007334284405171
P5034National Library of Korea IDKAC201610281
P950National Library of Spain IDXX5623192
P691NL CR AUT IDosa2016929756
P1207NUKAT IDn2018170675
P496ORCID iD0000-0002-0975-9019
P2038ResearchGate profile IDRob_Knight
P4012Semantic Scholar author ID143939190
P10861Springer Nature person ID016311745377.96
P2611TED speaker IDrob_knight
P214VIAF ID316003896
P10832WorldCat Entities IDE39PBJjXfKYWGwvWH4HmcHvWDq
P2002X usernameknightlabnews

P512academic degreedoctorateQ849697
P1416affiliationUniversity of California, San DiegoQ622664
P6424affiliation stringUniversity of California, San Diego (UCSD)
P166award receivedNational Institutes of Health Director's Pioneer AwardQ6973758
Clarivate Citation LaureatesQ7795894
Vilcek Prize for Creative PromiseQ33177437
Massry PrizeQ1907790
Fellow of the American Association for the Advancement of ScienceQ5442484
P27country of citizenshipNew ZealandQ664
P1343described by sourceObálky knihQ67311526
MedvikQ99413897
P69educated atPrinceton UniversityQ21578
University of OtagoQ1201513
P108employerUniversity of California, San DiegoQ622664
P734family nameKnightQ1777139
KnightQ1777139
KnightQ1777139
P101field of workcomputer scienceQ21198
microbiologyQ7193
pediatricsQ123028
informaticsQ4027615
P735given nameRobQ1795088
RobQ1795088
P1412languages spoken, written or signedEnglishQ1860
P106occupationscientistQ901
writerQ36180
biologistQ864503
university teacherQ1622272
P1344participant inWorld Economic Forum Annual Meeting 2015Q114717231
Global Conference 2019Q116813843
P21sex or gendermaleQ6581097
P8687social media followers11519
P937work locationSan DiegoQ16552

Reverse relations

author (P50)
Q122016752Špína je dobrá: význam bakterií pro vývoj imunitního systému vašeho dítěte
Q114012868846 TIME RESTRICTED FEEDING PROTECTS AGAINST ATHEROSCLEROSIS BY MODULATING LUMINAL GUT MICROBIOME RHYTHMS
Q100385697A Distinct Microbiome Signature in Posttreatment Lyme Disease Patients
Q56999415A Lightweight, Scalable Grid Computing Framework for Parallel Bioinformatics Applications
Q38748011A Microbiome Foundation for the Study of Crohn's Disease
Q92734223A Microbiome-Based Index for Assessing Skin Health and Treatment Effects for Atopic Dermatitis in Children
Q104801107A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria
Q64238781A Novel Sparse Compositional Technique Reveals Microbial Perturbations
Q112609138A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition
Q112558290A Prebiotic Diet Alters the Fecal Microbiome and Improves Sleep in Response to Sleep Disruption in Rats
Q128156932A Prebiotic Diet Containing Galactooligosaccharides and Polydextrose Produces Dynamic and Reproducible Changes in the Gut Microbial Ecosystem in Male Rats
Q111857499A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity
Q101237800A Sensitive, Rapid, and Portable CasRx-based Diagnostic Assay for SARS-CoV-2
Q96945930A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis
Q46349678A communal catalogue reveals Earth's multiscale microbial diversity
Q102129728A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities
Q33398330A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses
Q24649648A core gut microbiome in obese and lean twins
Q55442564A data analysis and coordination center for the human microbiome project.
Q38967091A distinct immunogenic region of glutamic acid decarboxylase 65 is naturally processed and presented by human islet cells to cytotoxic CD8 T cells.
Q24602401A framework for human microbiome research
Q34550721A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets
Q89644398A gut bacterial amyloid promotes α-synuclein aggregation and motor impairment in mice
Q64104335A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease
Q110923134A gut-derived metabolite alters brain activity and anxiety behaviour in mice
Q33883118A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis
Q34663033A meta-analysis of changes in bacterial and archaeal communities with time
Q35020251A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system
Q21559533A modular organization of the human intestinal mucosal microbiota and its association with inflammatory bowel disease
Q56998860A preliminary survey of lichen associated eukaryotes using pyrosequencing
Q33395570A simulated MS/MS library for spectrum-to-spectrum searching in large scale identification of proteins
Q24813759Abundance of correctly folded RNA motifs in sequence space, calculated on computational grids
Q36935436Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
Q33389581Activating and inhibiting connections in biological network dynamics
Q26998064Advancing analytical algorithms and pipelines for billions of microbial sequences
Q34995691Advancing our understanding of the human microbiome using QIIME
Q34442863Advancing the microbiome research community
Q64056462Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults
Q90067154Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing
Q34986967Alterations in the gut microbiota associated with HIV-1 infection
Q91363025Altered Gut Microbiota and Host Metabolite Profiles in HIV-infected Women
Q57138823American Gut: an Open Platform for Citizen Science Microbiome Research
Q45000244An Elegan(t) Screen for Drug-Microbe Interactions
Q29617497An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
Q33458326Anal gas evacuation and colonic microbiota in patients with flatulence: effect of diet
Q35668886Analysis of composition of microbiomes: a novel method for studying microbial composition
Q38518892Analysis of membrane proteins from human chronic myelogenous leukemia cells: comparison of extraction methods for multidimensional LC-MS/MS.
Q34384679Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome.
Q114979950Analytic Strategies for Understanding Host-Associated Microbial Communities
Q39744801Analyzing partially randomized nucleic acid pools: straight dope on doping
Q55379897Ancient Thali Diet: Gut Microbiota, Immunity, and Health.
Q30787076Ancient human oral plaque preserves a wealth of biological data
Q37534422Antibiotic discovery is a walk in the park
Q57114440Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism
Q115346763Antifungal isolates database of amphibian skin-associated bacteria and function against emerging fungal pathogens
Q37049811Are all horizontal gene transfers created equal? Prospects for mechanism-based studies of HGT patterns
Q90613783Are microbiome studies ready for hypothesis-driven research?
Q56999310Artificial Selection: Finding Function amongst Randomized Sequences
Q114868603Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection
Q46297294Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium.
Q97638000Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals
Q98778226Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort
Q41174299Associations between human milk oligosaccharides and infant body composition in the first 6 mo of life
Q112717774Associations of fecal microbial profiles with breast cancer and nonmalignant breast disease in the Ghana Breast Health Study
Q91527946Associations of the Fecal Microbial Proteome Composition and Proneness to Diet-induced Obesity
Q91968970Author Correction: Farm-like indoor microbiota in non-farm homes protects children from asthma development
Q89881043Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity
Q59092735Author Correction: Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity
Q64136247Author Correction: Regional variation limits applications of healthy gut microbiome reference ranges and disease models
Q92535334Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Q46213018Authors' reply to Mawer and Wilcox and Mullish and Williams
Q101476658Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data
Q34324792Bacteria from diverse habitats colonize and compete in the mouse gut.
Q33849721Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes.
Q34557144Bacterial colonization and succession in a newly opened hospital.
Q34738093Bacterial communities associated with the lichen symbiosis
Q33513372Bacterial communities of disease vectors sampled across time, space, and species
Q56558366Bacterial community changes in an industrial algae production system
Q59402061Bacterial community composition and dynamics spanning five years in freshwater bog lakes
Q24603709Bacterial community structures are unique and resilient in full-scale bioenergy systems
Q29547432Bacterial community variation in human body habitats across space and time
Q50041510Bacterial density rather than diversity correlates with hatching success across different avian species.
Q34571294Bacterial diversity in two Neonatal Intensive Care Units (NICUs).
Q115463754Bacterial metatranscriptomes in wastewater can differentiate virally infected human populations
Q98665506Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity
Q33837847Bacterial phylogeny structures soil resistomes across habitats
Q37604562Balance Trees Reveal Microbial Niche Differentiation.
Q34738730Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato).
Q30952736BayesFold: rational 2 degrees folds that combine thermodynamic, covariation, and chemical data for aligned RNA sequences
Q37217955Bayesian community-wide culture-independent microbial source tracking
Q90134725Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome
Q60547176Best practices for analysing microbiomes
Q33727853Biogeography and habitat modelling of high-alpine bacteria
Q37191627Bioinformatics assessment of beta-myosin mutations reveals myosin's high sensitivity to mutations
Q34638638Biphasic assembly of the murine intestinal microbiota during early development
Q34183033Boulder ALignment Editor (ALE): a web-based RNA alignment tool
Q46172713Bringing the Dynamic Microbiome to Life with Animations
Q99593673CD8 T cells drive anorexia, dysbiosis, and blooms of a commensal with immunosuppressive potential after viral infection
Q61443014Calour: an Interactive, Microbe-Centric Analysis Tool
Q40883013Can Your Microbiome Tell You What to Eat?
Q128156959Cancer's second genome: Microbial cancer diagnostics and redefining clonal evolution as a multispecies process
Q112293093Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome
Q40889629Carcass mass has little influence on the structure of gravesoil microbial communities
Q100945399Cell Tracking Profiler: a user-driven analysis framework for evaluating 4D live cell imaging data
Q93129610Challenges in the construction of knowledge bases for human microbiome-disease associations
Q41738576Changes in bacterial and eukaryotic communities during sewage decomposition in Mississippi river water
Q33691783Changes in microbial ecology after fecal microbiota transplantation for recurrent C. difficile infection affected by underlying inflammatory bowel disease
Q35963849Changes in vaginal microbiota following antimicrobial and probiotic therapy
Q30985238Changes through time: integrating microorganisms into the study of succession
Q64086774Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media
Q33462608Characterization of airborne microbial communities at a high-elevation site and their potential to act as atmospheric ice nuclei
Q63070990Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces
Q35850092Characterizing microbial communities through space and time
Q102075594Chemically informed analyses of metabolomics mass spectrometry data with Qemistree
Q124694969Chemically-informed Analyses of Metabolomics Mass Spectrometry Data with Qemistree
Q29614292Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
Q112745036Clean room microbiome complexity impacts planetary protection bioburden
Q21999547Closure of the NCBI SRA and implications for the long-term future of genomics data storage
Q34988798Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere
Q31031570Co-habiting amphibian species harbor unique skin bacterial communities in wild populations
Q42154171CodonExplorer: an interactive online database for the analysis of codon usage and sequence composition
Q37181120CodonExplorer: an online tool for analyzing codon usage and sequence composition, scaling from genes to genomes
Q31115660Cohabiting family members share microbiota with one another and with their dogs
Q59590850Colitis in TLR5-deficiency Mice: Role of the Microbiota
Q36627426Collaborative cloud-enabled tools allow rapid, reproducible biological insights
Q35851901Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies
Q105271659Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort
Q28744365Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation
Q34510413Commensal bacteria and MAMPs are necessary for stress-induced increases in IL-1β and IL-18 but not IL-6, IL-10 or MCP-1.
Q33776527Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity
Q92479565Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats
Q35896308Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients
Q38801039Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies
Q38781674Comparison of Collection Methods for Fecal Samples in Microbiome Studies
Q38750951Comparison of Fecal Collection Methods for Microbiota Studies in Bangladesh.
Q36047386Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys
Q112713167Comparison of fecal and oral collection methods for studies of the human microbiota in two Iranian cohorts
Q33388542Comparison of methods for estimating the nucleotide substitution matrix
Q57927149Comparison of oral collection methods for studies of microbiota
Q33554048Comparison of the vaginal microbial communities in women with recurrent genital HSV receiving acyclovir intravaginal rings
Q37472976Complex interactions among diet, gastrointestinal transit, and gut microbiota in humanized mice
Q21134932Composition of human skin microbiota affects attractiveness to malaria mosquitoes
Q112288314Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers
Q113786779Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype
Q36364571ConStrains identifies microbial strains in metagenomic datasets
Q28729258Conceptualizing a Genomics Software Institute (GSI)
Q34165489Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity
Q35208886Conducting a microbiome study
Q91711033Consent insufficient for data release-Response
Q51607816Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems.
Q90407896Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome
Q64004430Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations
Q26780437Context and the human microbiome
Q114110109Context-aware deconvolution of cell–cell communication with Tensor-cell2cell
Q99637276Context-aware dimensionality reduction deconvolutes gut microbial community dynamics
Q35015637Convergence of gut microbiomes in myrmecophagous mammals
Q90569895Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny
Q50026479Coprolites reveal ecological interactions lost with the extinction of New Zealand birds.
Q37685582Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping
Q42364055Correction for Gonzalez et al., "Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort".
Q49772901Correction for Morton et al., "Uncovering the Horseshoe Effect in Microbial Analyses".
Q45767109Correction: Commensal Bacteria and MAMPs Are Necessary for Stress-Induced Increases in IL-1β and IL-18 but Not IL-6, IL-10 or MCP-1.
Q55562692Correction: The Ecology of Microbial Communities Associated with Macrocystis pyrifera.
Q31048490Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.
Q50183104Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Q59543724Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Q38719319Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples
Q52682437Creating a 3D microbial and chemical snapshot of a human habitat.
Q36209280Cross-biome comparison of microbial association networks
Q56900002Crystal ball - 2013
Q56998329Culturing: Looking it up in our gut
Q52596479Current understanding of the human microbiome.
Q38720701DNA extraction for streamlined metagenomics of diverse environmental samples
Q56999355Database-Driven Grid Computing and Distributed Web Applications: A Comparison
Q37685576Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
Q102388298Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules
Q54205486Defining Host Responses during Systemic Bacterial Infection through Construction of a Murine Organ Proteome Atlas.
Q33995483Defining seasonal marine microbial community dynamics
Q34365385Defining the human microbiome
Q100385637Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome
Q33389536Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics
Q110898073Development of a Rapid and Sensitive CasRx-Based Diagnostic Assay for SARS-CoV-2
Q37870427Development of the human gastrointestinal microbiota and insights from high-throughput sequencing
Q38666271Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species
Q94491531Diet and the Gut Microbiome in 10–18-Month-Old Children Living in Urban Slums of Mumbai, India (OR01-08-19)
Q29614455Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
Q37576440Dietary Prebiotics and Bioactive Milk Fractions Improve NREM Sleep, Enhance REM Sleep Rebound and Attenuate the Stress-Induced Decrease in Diurnal Temperature and Gut Microbial Alpha Diversity
Q35512541Dietary effects on human gut microbiome diversity
Q35613911Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota
Q91883877Differences in gut microbiome composition between persons with chronic schizophrenia and healthy comparison subjects
Q57463916Differential Activation of Hepatic Invariant NKT Cell Subsets Plays a Key Role in Progression of Nonalcoholic Steatohepatitis
Q89729060Differing salivary microbiome diversity, community and diurnal rhythmicity in association with affective state and peripheral inflammation in adults
Q36368545Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae
Q33965950Direct sequencing of the human microbiome readily reveals community differences
Q46253067Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes
Q90653232Disease-modifying therapies alter gut microbial composition in MS
Q34380949Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents
Q38406283DivergentSet, a tool for picking non-redundant sequences from large sequence collections
Q35026844Diversity of Rickettsiales in the microbiome of the lone star tick, Amblyomma americanum
Q34484675Diversity, distribution and sources of bacteria in residential kitchens
Q28274959Diversity, stability and resilience of the human gut microbiota
Q28601066Diversity, structure and convergent evolution of the global sponge microbiome
Q24813693Do universal codon-usage patterns minimize the effects of mutation and translation error?
Q30350925Does protein structure influence trypsin miscleavage? Using structural properties to predict the behavior of related proteins.
Q39330352Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks
Q46193926Dramatic Differences in Gut Bacterial Densities Correlate with Diet and Habitat in Rainforest Ants
Q60430039Dramatic differences in gut bacterial densities help to explain the relationship between diet and habitat in rainforest ants
Q30633072Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection
Q40338595Dynamics of the human gut microbiome in inflammatory bowel disease.
Q58746898EMP Sample Submission Guide v1 (protocols.io.pfqdjmw)
Q30702273EMPeror: a tool for visualizing high-throughput microbial community data
Q111150024EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets
Q64281404Early-Career Scientists Shaping the World
Q100524688Early-life gut dysbiosis linked to juvenile mortality in ostriches
Q52587023Earth Microbiome Project and Global Systems Biology.
Q96131182Earth microbial co-occurrence network reveals interconnection pattern across microbiomes
Q35589320Effect of preservation method on spider monkey (Ateles geoffroyi) fecal microbiota over 8 weeks
Q33562124Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples
Q98567548Effects of Diet versus Gastric Bypass on Metabolic Function in Diabetes
Q112298640Effects of Immunization With the Soil-Derived Bacterium Mycobacterium vaccae on Stress Coping Behaviors and Cognitive Performance in a "Two Hit" Stressor Model
Q43354855Effects of field conditions on fecal microbiota
Q44210296Eggshell bacterial load is related to antimicrobial properties of feathers lining barn swallow nests.
Q108443171Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States
Q56998258Emerging Trends for Microbiome Analysis: From Single-Cell Functional Imaging to Microbiome Big Data
Q125890446Engineered bacteria detect tumor DNA
Q91681764Engineering the microbiome for animal health and conservation
Q90678648Enhanced Characterization of Drug Metabolism and the Influence of the Intestinal Microbiome: A Pharmacokinetic, Microbiome, and Untargeted Metabolomics Study
Q114867942Enhancing untargeted metabolomics using metadata-based source annotation
Q56999259Ensemble dispatching on an IBM Blue Gene/L for a bioinformatics knowledge environment
Q47236614Enterotypes in the landscape of gut microbial community composition.
Q34225669Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis
Q89485904Environmental radiation alters the gut microbiome of the bank vole Myodes glareolus
Q36319709Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape
Q64096455Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month
Q42334802Erratum for Linz et al., "Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes".
Q46231565Erratum to: Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species
Q42407562Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity
Q59791125Erratum to: The sponge microbiome project
Q47953960Erratum: Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity
Q50097788Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project
Q56999430Error Minimization and Coding Triplet/Binding Site Associations Are Independent Features of the Canonical Genetic Code
Q41895522Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
Q64890630Establishing microbial composition measurement standards with reference frames.
Q34315650Estimate of the abundance of cardiomyopathic mutations in the β-myosin gene
Q35866006Euphorbia plant latex is inhabited by diverse microbial communities
Q64238806Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease
Q114866613Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic
Q59137646Evaluating the Information Content of Shallow Shotgun Metagenomics
Q45959479Evaluating the impact of domestication and captivity on the horse gut microbiome.
Q28709582Evidence for a persistent microbial seed bank throughout the global ocean
Q28755326Evolution of mammals and their gut microbes
Q24682434Evolutionary rates vary among rRNA structural elements
Q57735585Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes
Q33749362Examining the global distribution of dominant archaeal populations in soil
Q35643176Exercise is More Effective at Altering Gut Microbial Composition and Producing Stable Changes in Lean Mass in Juvenile versus Adult Male F344 Rats
Q101130673Expanding magnetic organelle biogenesis in the domain Bacteria
Q50076423Expanding our Understanding of the Role of the Microbiome in Health and Disease
Q93129547Expanding the scope and scale of microbiome research
Q112690724Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops
Q52660744Experimental Chagas disease-induced perturbations of the fecal microbiome and metabolome.
Q34241426Experimental and analytical tools for studying the human microbiome
Q47215784Exploration of the Germline Genome of the Ciliate Chilodonella uncinata through Single-Cell Omics (Transcriptomics and Genomics).
Q52560116Exposure to toxic metals triggers unique responses from the rat gut microbiota.
Q37223239Extreme Dysbiosis of the Microbiome in Critical Illness
Q91833500FXR Regulates Intestinal Cancer Stem Cell Proliferation
Q46650968Faecal transplants
Q92826462Farm-like indoor microbiota in non-farm homes protects children from asthma development
Q33497123Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
Q25257017Fast-Find: a novel computational approach to analyzing combinatorial motifs
Q37350415Fat and vitamin intakes during pregnancy have stronger relations with a pro-inflammatory maternal microbiota than does carbohydrate intake
Q95604227Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs
Q98665482Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment
Q42566104Fecal Microbiome in Epidemiologic Studies-Response
Q100431072Fecal Microbiota Transplant is Highly Effective in Real-World Practice: Initial Results from the FMT National Registry
Q43207046Finding specific RNA motifs: function in a zeptomole world?
Q35192230Finding the missing links among metabolites, microbes, and the host
Q33778976Forensic identification using skin bacterial communities
Q28821682From Sample to Multi-Omics Conclusions in under 48 Hours
Q41967491From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal
Q34617965From molecules to dynamic biological communities
Q98665244Fructose stimulated de novo lipogenesis is promoted by inflammation
Q59455083GABA-modulating bacteria of the human gut microbiota
Q100475608Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity
Q37026339Genetic Determinants of the Gut Microbiome in UK Twins
Q35742093Genetic and environmental control of host-gut microbiota interactions
Q34322168Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice
Q57605580Genetic determinants of risk and survival in pulmonary arterial hypertension
Q38610506Genetic influences on the human oral microbiome
Q34372980Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota
Q35811875Genome-Wide Tuning of Protein Expression Levels to Rapidly Engineer Microbial Traits
Q57179904Genomic Standards Consortium Projects
Q24810416Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains
Q61136073Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota
Q28656339Genomic standards consortium projects
Q34279636Geographic distance and pH drive bacterial distribution in alkaline lake sediments across Tibetan Plateau
Q37349213Geography and Location Are the Primary Drivers of Office Microbiome Composition
Q35932291Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses
Q34509787Global biogeography of highly diverse protistan communities in soil
Q105826365Global chemical analysis of biology by mass spectrometry
Q89900995Global chemical effects of the microbiome include new bile-acid conjugations
Q33288814Global patterns in bacterial diversity
Q50354035Global patterns in the biogeography of bacterial taxa
Q29614456Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
Q34093458Glycan degradation (GlyDeR) analysis predicts mammalian gut microbiota abundance and host diet-specific adaptations
Q92541502Ground beef microbiome changes with antimicrobial decontamination interventions and product storage
Q46791659Guiding longitudinal sampling in IBD cohorts
Q34362546Guilt by association: the arginine case revisited
Q73177184Gut Instinct
Q100961148Gut Microbiome in Schizophrenia: Altered Functional Pathways Related to Immune Modulation and Atherosclerotic Risk
Q49799343Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction
Q36212145Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease
Q57798565Gut Microbiota in the First 2 Years of Life and the Association with Body Mass Index at Age 12 in a Norwegian Birth Cohort
Q42221329Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models.
Q28251501Gut microbes and the brain: paradigm shift in neuroscience
Q88996819Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis
Q91041102Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity
Q93179025Gut microbiome in serious mental illnesses: A systematic review and critical evaluation
Q46679589Gut microbiome of mothers delivering prematurely shows reduced diversity and lower relative abundance of Bifidobacterium and Streptococcus
Q30418022Gut microbiomes of Malawian twin pairs discordant for kwashiorkor
Q29614796Gut microbiota from twins discordant for obesity modulate metabolism in mice
Q92151297Gut microbiota in wild and captive Guizhou snub-nosed monkeys, Rhinopithecus brelichi
Q59767957Gut microbiota utilize immunoglobulin A for mucosal colonization
Q27313830HLA-B27 and human β2-microglobulin affect the gut microbiota of transgenic rats
Q37282767Heritable components of the human fecal microbiome are associated with visceral fat.
Q115463775High throughput wastewater SARS-CoV-2 detection enables forecasting of community infection dynamics in San Diego county
Q96639372High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy
Q58699940High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity
Q115463768High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County
Q37404989High-fat diet determines the composition of the murine gut microbiome independently of obesity
Q91106683Home chemical and microbial transitions across urbanization
Q52580420Hopanoid-producing bacteria in the Red Sea include the major marine nitrite-oxidizers.
Q39768161Host age, social group, and habitat type influence the gut microbiota of wild ring-tailed lemurs (Lemur catta).
Q36421887Host remodeling of the gut microbiome and metabolic changes during pregnancy
Q101226770Host variables confound gut microbiota studies of human disease
Q33839493Host-associated and free-living phage communities differ profoundly in phylogenetic composition
Q36595116Host-bacterial coevolution and the search for new drug targets
Q56999475How biologists conceptualize genes: an empirical study
Q36698622How delivery mode and feeding can shape the bacterial community in the infant gut
Q92442171Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice
Q35979672Human Immunodeficiency Virus nef signature sequences are associated with pulmonary hypertension
Q89663852Human Skin, Oral, and Gut Microbiomes Predict Chronological Age
Q34630305Human genetics shape the gut microbiome.
Q24602950Human gut microbiome viewed across age and geography
Q28655573Human microbiome science: vision for the future, Bethesda, MD, July 24 to 26, 2013
Q30499024Human oral, gut, and plaque microbiota in patients with atherosclerosis
Q34054045Human-associated microbial signatures: examining their predictive value
Q93104883IL-4Rα Blockade by Dupilumab Decreases Staphylococcus aureus Colonization and Increases Microbial Diversity in Atopic Dermatitis
Q59137634Identifying and Predicting Novelty in Microbiome Studies
Q33955014Identifying genetic determinants needed to establish a human gut symbiont in its habitat
Q36285425Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts
Q35189250Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment
Q36978157Immunization with a heat-killed preparation of the environmental bacterium Mycobacterium vaccae promotes stress resilience in mice
Q42379906Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome
Q34072003Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest.
Q34981695Impact of ileocecal resection and concomitant antibiotics on the microbiome of the murine jejunum and colon
Q33946340Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
Q46285382Impacts of the Human Gut Microbiome on Therapeutics.
Q113516894Impacts of the Marine Hatchery Built Environment, Water and Feed on Mucosal Microbiome Colonization Across Ontogeny in Yellowtail Kingfish, Seriola lalandi
Q36185156Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
Q33602009Improved HF183 quantitative real-time PCR assay for characterization of human fecal pollution in ambient surface water samples
Q40540118Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics
Q52684674Improving saliva shotgun metagenomics by chemical host DNA depletion.
Q34786190Individual diet has sex-dependent effects on vertebrate gut microbiota
Q42723200Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch).
Q46066476Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity
Q51877802Information, probability, and the abundance of the simplest RNA active sites.
Q35840705Inhibitory bacteria reduce fungi on early life stages of endangered Colorado boreal toads (Anaxyrus boreas).
Q33339041Insights and inferences about integron evolution from genomic data
Q34516183Insights from characterizing extinct human gut microbiomes
Q35161895Interacting symbionts and immunity in the amphibian skin mucosome predict disease risk and probiotic effectiveness
Q54367125Interleukin-1β (IL-1β) promotes susceptibility of Toll-like receptor 5 (TLR5) deficient mice to colitis.
Q46227294Intermittent Hypoxia and Hypercapnia Accelerate Atherosclerosis, Partially via Trimethylamine-Oxide
Q114008854Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome
Q64079854Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems
Q55087371Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome.
Q46072510Intestinal adaptation in proximal and distal segments: Two epithelial responses diverge after intestinal separation
Q113878354Intestinal transgene delivery with native E. coli chassis allows persistent physiological changes
Q56999524Is the Genetic Code Really a Frozen Accident? New Evidence from in Vitro Selection
Q92469474Is there convergence of gut microbes in blood-feeding vertebrates?
Q51144968KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples.
Q37000950Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets
Q36171186Key challenges in proteomics and proteoinformatics. Progress in proteins
Q34319228Lake microbial communities are resilient after a whole-ecosystem disturbance
Q55714649Large-scale replicated field study of maize rhizosphere identifies heritable microbes.
Q91106801Learning representations of microbe-metabolite interactions
Q44179754Let researchers try new paths
Q99711069Leveling up citizen science
Q56999271Life Through A Microbial Lens
Q28817917Lifestyle chemistries from phones for individual profiling
Q113820221Limited microbiome differences in captive and semi-wild primate populations consuming similar diets
Q24609914Linking long-term dietary patterns with gut microbial enterotypes
Q57168732Links between environment, diet, and the hunter-gatherer microbiome
Q34435848Longitudinal analysis of microbial interaction between humans and the indoor environment
Q90003656Longitudinal survey of microbiome associated with particulate matter in a megacity
Q109918991METTL3 regulates viral m6A RNA modification and host cell innate immune responses during SARS-CoV-2 infection
Q35825124MICROBIOME. A unified initiative to harness Earth's microbiomes
Q30683061MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment.
Q35197104Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity
Q92650127Major shifts in gut microbiota during development and its relationship to growth in ostriches
Q36345409Mass Spectrometry Based Molecular 3D-Cartography of Plant Metabolites
Q40053788Mass Spectrometry-Based Chemical Cartography of a Cardiac Parasitic Infection.
Q38812357Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats.
Q92365644Mass spectrometry searches using MASST
Q56998794Mathematical Approaches for Describing Microbial Populations: Practice and Theory for Extrapolation of Rich Environments
Q46841400Meeting report for the 1st skin microbiota workshop, boulder, CO October 15-16 2012.
Q35037198Meeting report of the RNA Ontology Consortium January 8-9, 2011.
Q28743031Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010
Q37084287Meeting report: fungal its workshop (october 2012).
Q34163450Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project
Q37309738Meta-analyses of human gut microbes associated with obesity and IBD
Q34824829Meta-analyses of studies of the human microbiota
Q90821363MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities
Q29615053Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5
Q90204126Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs
Q34683148Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil
Q36078502Metagenomic covariation along densely sampled environmental gradients in the Red Sea.
Q28657714Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
Q58693878Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient
Q60547174Methods for phylogenetic analysis of microbiome data
Q98575674Microbe-Metabolite Associations Linked to the Rebounding Murine Gut Microbiome Postcolonization with Vancomycin-Resistant Enterococcus faecium
Q33929014Microbes do not follow the elevational diversity patterns of plants and animals
Q92600129Microbial Diversity in Clinical Microbiome Studies: Sample Size and Statistical Power Considerations
Q39788605Microbial Skin Inhabitants: Friends Forever
Q92077094Microbial biogeography and ecology of the mouth and implications for periodontal diseases
Q34088169Microbial biogeography of public restroom surfaces
Q112285604Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity
Q35866416Microbial community assembly and metabolic function during mammalian corpse decomposition.
Q35066436Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus).
Q34017154Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
Q34168516Microbial community resemblance methods differ in their ability to detect biologically relevant patterns
Q102380813Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment
Q92024173Microbial ecology of Atlantic salmon, Salmo salar, hatcheries: impacts of the built environment on fish mucosal microbiota
Q62488965Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus)
Q28083570Microbial endocrinology: the interplay between the microbiota and the endocrine system
Q35103951Microbial eukaryotes in the human microbiome: ecology, evolution, and future directions
Q46263414Microbiology of death
Q57155462Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians
Q49804974Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models
Q38862158Microbiome Tools for Forensic Science
Q90665292Microbiome analyses of blood and tissues suggest cancer diagnostic approach
Q98158312Microbiome and Metagenome Analyses of a Closed Habitat during Human Occupation
Q36069076Microbiome-wide association studies link dynamic microbial consortia to disease
Q28084884Microbiota and Host Nutrition across Plant and Animal Kingdoms
Q35633202Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt
Q36454308Microbiota regulate intestinal absorption and metabolism of fatty acids in the zebrafish
Q37813012Microbiota restoration: natural and supplemented recovery of human microbial communities
Q41580540Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort
Q36008546Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
Q46202632Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Q90261518Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis
Q35566907Molecular cartography of the human skin surface in 3D
Q98953157Mortality Risk Profiling of Staphylococcus aureus Bacteremia by Multi-omic Serum Analysis Reveals Early Predictive and Pathogenic Signatures
Q37736126Mosquito Microbiome Dynamics, a Background for Prevalence and Seasonality of West Nile Virus.
Q36955035MotifCluster: an interactive online tool for clustering and visualizing sequences using shared motifs
Q21999542Moving pictures of the human microbiome
Q114866278Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity
Q92383004Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
Q115463763Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments
Q56998666Multilevel Research Strategies and Biological Systems
Q114866907Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention
Q58699937Multiple Sclerosis-Associated Changes in the Composition and Immune Functions of Spore-Forming Bacteria
Q36898761Multiple pattern matching: a Markov chain approach.
Q90407922Multiple-Disease Detection and Classification across Cohorts via Microbiome Search
Q51098001Multiplex growth rate phenotyping of synthetic mutants in selection to engineer glucose and xylose co-utilization in Escherichia coli.
Q33611571Natural and artificial RNAs occupy the same restricted region of sequence space
Q34366745Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories
Q64243305Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome
Q56999091New Insight into the Diversity of Life's Building Blocks: Evenness, Not Variance
Q59326940Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16-17, 2017
Q58376391Niche partitioning of a pathogenic microbiome driven by chemical gradients
Q112291483Nonalcoholic Steatohepatitis and HCC in a Hyperphagic Mouse Accelerated by Western Diet
Q31169829Normalization and microbial differential abundance strategies depend upon data characteristics
Q27676791Nucleotides Adjacent to the Ligand-Binding Pocket are Linked to Activity Tuning in the Purine Riboswitch
Q34135161Nucleotides that are essential but not conserved; a sufficient L-tryptophan site in RNA.
Q36354863Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood
Q99616547Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India
Q36166602Occurrence of the aminoacyl-tRNA synthetases in high-molecular weight complexes correlates with the size of substrate amino acids
Q36185149Open-Source Sequence Clustering Methods Improve the State Of the Art.
Q91041107Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
Q55339477Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.
Q93011474Organ-level protein networks as a reference for the host effects of the microbiome
Q33841913Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
Q37682439Origin of microbial biomineralization and magnetotaxis during the Archean
Q30350869Origins of the genetic code: the escaped triplet theory.
Q24625830Our microbial selves: what ecology can teach us
Q50177789Overview and systematic review of studies of microbiome in schizophrenia and bipolar disorder
Q22066277Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins
Q28552559Parallel Mapping of Antibiotic Resistance Alleles in Escherichia coli
Q21146058Parallel evolution of the genetic code in arthropod mitochondrial genomes.
Q38962543Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome
Q96685407Paroxetine Administration Affects Microbiota and Bile Acid Levels in Mice
Q34511597Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer
Q30855762Pathological rate matrices: from primates to pathogens
Q38997948Patterns in Gut Microbiota Similarity Associated with Degree of Sociality among Sex Classes of a Neotropical Primate
Q89602723Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population Study
Q42374059Perinatal Bisphenol A Exposure Induces Chronic Inflammation in Rabbit Offspring via Modulation of Gut Bacteria and Their Metabolites
Q55224528Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information.
Q35849221Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species
Q36477709Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.
Q91619552Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Q111854025Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy
Q38747564Pigs, Unlike Mice, Have Two Distinct Colonic Stem Cell Populations Similar to Humans That Respond to High-Calorie Diet prior to Insulin Resistance
Q33592799Postprandial remodeling of the gut microbiota in Burmese pythons
Q95301280Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.
Q36148926Precision medicine in alcoholic and nonalcoholic fatty liver disease via modulating the gut microbiota
Q35768807Prediction of Early Childhood Caries via Spatial-Temporal Variations of Oral Microbiota
Q29615050Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
Q34071998Predictive modeling of gingivitis severity and susceptibility via oral microbiota
Q37349238Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies
Q56985935Preserving microbial diversity
Q60962245Preserving microbial diversity
Q40493687Prevalence and genetic diversity of Blastocystis in family units living in the United States
Q34771394PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers
Q51265648Probiotic treatment restores protection against lethal fungal infection lost during amphibian captivity.
Q92058978Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media
Q50025527Publisher Correction: Enterotypes in the landscape of gut microbial community composition
Q88764776Publisher Correction: The gut-liver axis and the intersection with the microbiome
Q21184113PyCogent: a toolkit for making sense from sequence
Q29616628PyNAST: a flexible tool for aligning sequences to a template alignment
Q93339281QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data
Q59600315QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
Q63952579QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
Q24616873QIIME allows analysis of high-throughput community sequencing data
Q57060051Qiita: rapid, web-enabled microbiome meta-analysis
Q34497700Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
Q111150023Quantifying Live Microbial Load in Human Saliva Samples over Time Reveals Stable Composition and Dynamic Load
Q93024072Quantifying and Understanding Well-to-Well Contamination in Microbiome Research
Q34601325Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities
Q42030005RNA structure prediction from evolutionary patterns of nucleotide composition
Q34019598RNA-amino acid binding: a stereochemical era for the genetic code
Q36060804RNASTAR: an RNA STructural Alignment Repository that provides insight into the evolution of natural and artificial RNAs
Q112272524Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus
Q115463762Rapid, large-scale wastewater surveillance and automated reporting system enabled early detection of nearly 85% of COVID-19 cases on a University campus
Q34156500Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
Q98513836ReDU: a framework to find and reanalyze public mass spectrometry data
Q35030117Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States
Q91555336Red Sea SAR11 and Prochlorococcus Single-Cell Genomes Reflect Globally Distributed Pangenomes
Q114868119Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV
Q58045721Regional variation limits applications of healthy gut microbiome reference ranges and disease models
Q37237047Regulation of myocardial ketone body metabolism by the gut microbiota during nutrient deprivation
Q89802206Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome
Q28655590Replenishing our defensive microbes
Q64238713Reply to Moossavi and Azad, "Quantifying and Interpreting the Association between Early-Life Gut Microbiota Composition and Childhood Obesity"
Q45963312Reply to Putignani et al.: Vagina as a major source of natural inoculum for the newborn.
Q92459643Reply to Sun et al., "Identifying Composition Novelty in Microbiome Studies: Improvement of Prediction Accuracy"
Q47208218Reply to Wang and Chen: An ancient origin of magnetotactic bacteria.
Q56999381Reports of the death of the gene are greatly exaggerated
Q91323153Reproducibility, stability, and accuracy of microbial profiles by fecal sample collection method in three distinct populations
Q43884821Reproducibility: In praise of open research measures
Q92154246Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Q110530265Research priorities for the management of freshwater fish habitat in Canada
Q34153634Reshaping the gut microbiome with bacterial transplantation and antibiotic intake
Q41816437Responses of gut microbiota to diet composition and weight loss in lean and obese mice
Q34442627Rethinking "enterotypes".
Q127060100Reverse metabolomics for the discovery of chemical structures from humans
Q33959353Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives
Q43200625Ribosomal RNA, the lens into life
Q22991064Rob Knight: How our microbes make us who we are
Q91167709Role of the microbiome in human development
Q37341078Role of the microbiome, probiotics, and 'dysbiosis therapy' in critical illness
Q114016109Ruminiclostridium 5, Parabacteroides distasonis, and bile acid profile are modulated by prebiotic diet and associate with facilitated sleep/clock realignment after chronic disruption of rhythms
Q98467334SARS-CoV-2 Infection Among Symptom-Free Healthcare Workers
Q111150100SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment
Q94512495SHOGUN: a modular, accurate, and scalable framework for microbiome quantification
Q112570213Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides
Q33645951Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
Q30839326Satellite remote sensing data can be used to model marine microbial metabolite turnover.
Q38609456Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania.
Q34477038Seasonal restructuring of the ground squirrel gut microbiota over the annual hibernation cycle
Q50952471Seasonal variation of postmortem microbial communities.
Q36047393Secondary structure information does not improve OTU assignment for partial 16s rRNA sequences
Q36047445Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences
Q33656510Selection, history and chemistry: the three faces of the genetic code.
Q28730952Sequencing our way towards understanding global eukaryotic biodiversity
Q28742528Sharing and archiving nucleic acid structure mapping data
Q27818844Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
Q56999210Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil
Q51834648Short Course in the Microbiome.
Q41868575Short pyrosequencing reads suffice for accurate microbial community analysis
Q33304962Short-term temporal variability in airborne bacterial and fungal populations
Q33747306Significant Impacts of Increasing Aridity on the Arid Soil Microbiome.
Q28748323Simple, recurring RNA binding sites for L-arginine
Q28709077Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities
Q92238756Single-Cell Transcriptomics Reveal a Correlation between Genome Architecture and Gene Family Evolution in Ciliates
Q35708558SitePainter: a tool for exploring biogeographical patterns
Q34366668Size, constant sequences, and optimal selection
Q56998538Skin bacteria provide early protection for newly metamorphosed southern leopard frogs (Rana sphenocephala) against the frog-killing fungus, Batrachochytrium dendrobatidis
Q35217073SnapShot: the human microbiome
Q46111338Social behaviour and gut microbiota in red-bellied lemurs (Eulemur rubriventer): In search of the role of immunity in the evolution of sociality
Q51631348Soil bacterial and fungal communities across a pH gradient in an arable soil.
Q33609158Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes
Q33976320Sources of bacteria in outdoor air across cities in the midwestern United States.
Q36401477Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer
Q34286448Spatial and temporal variability of the human microbiota
Q35018790Spatial variability in airborne bacterial communities across land-use types and their relationship to the bacterial communities of potential source environments
Q35111744Specialized metabolites from the microbiome in health and disease
Q90663038Species abundance information improves sequence taxonomy classification accuracy
Q33330731Species divergence and the measurement of microbial diversity
Q58064075Species-level functional profiling of metagenomes and metatranscriptomes
Q35626865Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity
Q42142532Stable tRNA-based phylogenies using only 76 nucleotides
Q45027038Strains, functions and dynamics in the expanded Human Microbiome Project
Q37078364Stress response, gut microbial diversity and sexual signals correlate with social interactions.
Q58083882Striped UniFrac: enabling microbiome analysis at unprecedented scale
Q27683507Structural basis for diversity in the SAM clan of riboswitches
Q24626370Structure, function and diversity of the healthy human microbiome
Q34090756Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
Q35275819Subsistence strategies in traditional societies distinguish gut microbiomes
Q29615811Succession of microbial consortia in the developing infant gut microbiome
Q33735079Supervised classification of human microbiota
Q35018800Supervised classification of microbiota mitigates mislabeling errors
Q91327163Suppression of the gut microbiome ameliorates age-related arterial dysfunction and oxidative stress in mice
Q56999455TaskSpaces: A Software Framework for Parallel Bioinformatics on Computational Grids
Q55059986Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm.
Q112722609Taxonomic signatures of cause-specific mortality risk in human gut microbiome
Q31148287Technology and techniques for microbial ecology via DNA sequencing
Q34617108Temporal variability is a personalized feature of the human microbiome
Q95336382Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus
Q92172545Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks
Q56999289The 'rare biosphere': a reality check
Q28846212The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
Q33815265The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.
Q46022787The Earth Microbiome Project: The Meeting Report for the 1st International Earth Microbiome Project Conference, Shenzhen, China, June 13th-15th 2011.
Q34076643The Earth Microbiome project: successes and aspirations
Q34807464The Ecology of Microbial Communities Associated with Macrocystis pyrifera
Q46266374The Effects of Captivity on the Mammalian Gut Microbiome
Q114873618The Fecal Microbiome and Metabolome of Pitt Hopkins Syndrome, a Severe Autism Spectrum Disorder
Q28743400The Genomic Standards Consortium
Q104140757The Gut Microbiome, Aging, and Longevity: A Systematic Review
Q37084307The Hospital Microbiome Project: Meeting Report for the 1st Hospital Microbiome Project Workshop on sampling design and building science measurements, Chicago, USA, June 7th-8th 2012.
Q112276573The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients
Q34384120The Human Microbiome Project: a community resource for the healthy human microbiome
Q38856058The Microbiome and Human Biology.
Q91834503The Microbiome and Its Potential for Pharmacology
Q38682462The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study
Q30248903The Microbiota, Immunoregulation, and Mental Health: Implications for Public Health
Q37349644The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat
Q42554061The RNA structure alignment ontology
Q100300519The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment
Q35684862The UniFrac significance test is sensitive to tree topology
Q112704626The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction
Q33454135The Western English Channel contains a persistent microbial seed bank
Q35028838The amphibian skin-associated microbiome across species, space and life history stages
Q33694164The bacterial microbiota in the oral mucosa of rural Amerindians
Q33525277The cladistic basis for the phylogenetic diversity (PD) measure links evolutionary features to environmental gradients and supports broad applications of microbial ecology's "phylogenetic beta diversity" framework
Q36897353The convergence of carbohydrate active gene repertoires in human gut microbes
Q33603468The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves
Q89669043The effect of legume supplementation on the gut microbiota in rural Malawian infants aged 6 to 12 months
Q92133221The emergence of microbiome centres
Q30391823The founding charter of the Genomic Observatories Network
Q64083788The genetic basis for adaptation of model-designed syntrophic co-cultures
Q28744689The genomic standards consortium: bringing standards to life for microbial ecology
Q88968726The gut microbiome of nonhuman primates: Lessons in ecology and evolution
Q35740981The gut microbiota in human energy homeostasis and obesity
Q88634168The gut-liver axis and the intersection with the microbiome
Q47100033The human microbiome in evolution.
Q29547661The human microbiome project
Q34602628The human microbiome: eliminating the biomedical/environmental dichotomy in microbial ecology
Q35829917The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins
Q114865673The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study)
Q92688326The impact of skin care products on skin chemistry and microbiome dynamics
Q36976749The influence of sex, handedness, and washing on the diversity of hand surface bacteria
Q35929498The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites
Q33915560The intestinal metabolome: an intersection between microbiota and host
Q37217949The long-term stability of the human gut microbiota
Q33318084The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis
Q44700459The microbiome explored: recent insights and future challenges
Q35897279The microbiome of uncontacted Amerindians
Q35865351The microbiome quality control project: baseline study design and future directions
Q35114569The mind-body-microbial continuum
Q32079944The molecular basis of nuclear genetic code change in ciliates.
Q114868808The molecular impact of life in an indoor environment
Q59808471The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus
Q36052413The pediatric intestinal mucosal microbiome remains altered after clinical resolution of inflammatory and ischemic disease
Q42169942The sponge microbiome project
Q33762817The treatment-naive microbiome in new-onset Crohn's disease
Q34248981The under-recognized dominance of Verrucomicrobia in soil bacterial communities
Q57179946The “Minimum Information about an ENvironmental Sequence” (MIENS) specification
Q57179947The “Minimum Information about an ENvironmental Sequence” (MIENS) specification
Q114866922Three Dimensional Cartography of Microbiome and Metabolome Data onto Radiological Images of the Human Lung
Q47423525Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung
Q28066755Tiny microbes, enormous impacts: what matters in gut microbiome studies?
Q35875718Tools for the Microbiome: Nano and Beyond
Q35411757TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata
Q28601657Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges
Q39513442Toward anthropomimetic robotics: development, simulation, and control of a musculoskeletal torso
Q34199920Toward effective probiotics for autism and other neurodevelopmental disorders
Q61014268Toward unrestricted use of public genomic data:
Q30416166Towards large-cohort comparative studies to define the factors influencing the gut microbial community structure of ASD patients
Q58583294Trace Evidence Potential in Postmortem Skin Microbiomes: From Death Scene to Morgue
Q88186957Tracking Human Gut Microbiome Changes Resulting from a Colonoscopy
Q35546871Tracking down the sources of experimental contamination in microbiome studies
Q91880285Trait-like vulnerability of higher-order cognition and ability to maintain wakefulness during combined sleep restriction and circadian misalignment
Q33617304Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes
Q35026610Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice
Q44185950Translating the human microbiome
Q47126413Translational medicine and the human microbiome
Q100381838Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans
Q102335764Triclosan leads to dysregulation of the metabolic regulator FGF21 exacerbating high fat diet-induced nonalcoholic fatty liver disease
Q92266166Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary
Q35980261Turning Participatory Microbiome Research into Usable Data: Lessons from the American Gut Project
Q64925875Twisted Tales: Insights into Genome Diversity of Ciliates Using Single-Cell 'Omics.
Q99616665Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota
Q98937168Type I IFNs and CD8 T cells increase intestinal barrier permeability after chronic viral infection
Q96429312Ultra-low input single tube linked-read library method enables short-read second-generation sequencing systems to generate highly accurate and economical long-range sequencing information routinely
Q37657033Uncovering the Horseshoe Effect in Microbial Analyses
Q29622870UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context
Q29547435UniFrac: a new phylogenetic method for comparing microbial communities
Q35018645UniFrac: an effective distance metric for microbial community comparison
Q38954536Unique Strain of Rickettsia parkeri Associated with the Hard Tick Dermacentor parumapertus Neumann in the Western United States
Q113282892Unlocking capacities of genomics for the COVID-19 response and future pandemics
Q28601380Unlocking the potential of metagenomics through replicated experimental design
Q34097245Using QIIME to analyze 16S rRNA gene sequences from microbial communities
Q56636344Using QIIME to analyze 16S rRNA gene sequences from microbial communities
Q56998431Using machine learning to identify major shifts in human gut microbiome protein family abundance in disease
Q56998438Using the gut microbiota as a novel tool for examining colobine primate GI health
Q33261658Using the nucleotide substitution rate matrix to detect horizontal gene transfer
Q112801724Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data
Q35841371Variable responses of human and non-human primate gut microbiomes to a Western diet
Q35973196Variation in the Microbiota of Ixodes Ticks with Regard to Geography, Species, and Sex
Q36692028Vertebrate Hosts as Islands: Dynamics of Selection, Immigration, Loss, Persistence, and Potential Function of Bacteria on Salamander Skin
Q34057146Vertebrate decomposition is accelerated by soil microbes
Q94548390Visualizing 'omic feature rankings and log-ratios using Qurro
Q103001538Vitamin D metabolites and the gut microbiome in older men
Q90340749Voices in methods development
Q35942590Walls talk: Microbial biogeography of homes spanning urbanization.
Q115463759Wastewater and surface monitoring to detect COVID-19 in elementary school settings: The Safer at School Early Alert project
Q115463752Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission
Q115463755Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission
Q116853200Wastewater surveillance for public health
Q44424789What is the value of a food and drug administration investigational new drug application for fecal microbiota transplantation to treat Clostridium difficile Infection?
Q34662045Which is more important for classifying microbial communities: who's there or what they can do?
Q56998562Why Microbiome Treatments Could Pay Off Soon
Q35567697Why microbiome treatments could pay off soon
Q37072986Widespread colonization of the lung by Tropheryma whipplei in HIV infection
Q28754891Worlds within worlds: evolution of the vertebrate gut microbiota
Q40300533Xenobiotics and the human gut microbiome: metatranscriptomics reveal the active players
Q124670541microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data
Q39206327mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking
Q56998670pH is a good predictor of the distribution of anoxygenic purple phototrophic bacteria in Arctic soils
Q93024078redbiom: a Rapid Sample Discovery and Feature Characterization System
Q56999465tRNA Creation by Hairpin Duplication

Q61043174Robert D. Knightdifferent fromP1889

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