Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

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Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences is …
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scholarly articleQ13442814

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P356DOI10.7717/PEERJ.545
P8608Fatcat IDrelease_ig42buhwozhgpf3cakxbh7okae
P932PMC publication ID4145071
P698PubMed publication ID25177538
P5875ResearchGate publication ID265213535

P50authorSusan M HuseQ87065534
Jose C ClementeQ87191879
Jack A GilbertQ88139527
J Gregory CaporasoQ88261455
Daniel McDonaldQ88798031
Jose A Navas-MolinaQ91948852
Antonio GonzalezQ110864255
William A. WaltersQ110875276
John ChaseQ110875280
Adam Robbins-PiankaQ111079865
Rob KnightQ20657126
Sean M. GibbonsQ51520082
Yan HeQ57274261
Jai Ram RideoutQ63958978
P2093author name stringLuke K Ursell
Hong-Wei Zhou
P2860cites workMoving pictures of the human microbiomeQ21999542
Human gut microbiome viewed across age and geographyQ24602950
QIIME allows analysis of high-throughput community sequencing dataQ24616873
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-omeQ28846212
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequencesQ29547172
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARBQ29547254
Search and clustering orders of magnitude faster than BLASTQ29547431
Bacterial community variation in human body habitats across space and timeQ29547432
UniFrac: a new phylogenetic method for comparing microbial communitiesQ29547435
The detection of disease clustering and a generalized regression approachQ29547676
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scaleQ29617333
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaeaQ29617497
Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.Q30720610
Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysisQ34026191
Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome projectQ34163450
Advancing our understanding of the human microbiome using QIIMEQ34995691
P4510describes a project that usesJupyter notebook fileQ70357595
P304page(s)e545
P577publication date2014-08-21
P1433published inPeerJQ2000010
P1476titleSubsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
P478volume2

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