scholarly article | Q13442814 |
P6179 | Dimensions Publication ID | 1084252802 |
P356 | DOI | 10.1186/S40168-017-0237-Y |
P2888 | exact match | https://scigraph.springernature.com/pub.10.1186/s40168-017-0237-y |
P932 | PMC publication ID | 5335496 |
P698 | PubMed publication ID | 28253908 |
P50 | author | Rob Knight | Q20657126 |
Catherine A. Lozupone | Q21425018 | ||
Shyamal D Peddada | Q56448445 | ||
Amnon Amir | Q89259798 | ||
Kyle Bittinger | Q91874782 | ||
Amanda Birmingham | Q92172536 | ||
Zhenjiang Zech Xu | Q110853861 | ||
Yoshiki Vázquez-Baeza | Q110853916 | ||
Antonio Gonzalez | Q110864255 | ||
Embriette R Hyde | Q110875315 | ||
P2093 | author name string | Jesse R Zaneveld | |
Sophie Weiss | |||
P2860 | cites work | Proportionality: a valid alternative to correlation for relative data | Q21145290 |
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses | Q21146690 | ||
Differential expression analysis for sequence count data | Q21184103 | ||
Bioconductor: open software development for computational biology and bioinformatics | Q21194861 | ||
Moving pictures of the human microbiome | Q21999542 | ||
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data | Q24288698 | ||
Obesity alters gut microbial ecology | Q24531503 | ||
QIIME allows analysis of high-throughput community sequencing data | Q24616873 | ||
A human gut microbial gene catalogue established by metagenomic sequencing | Q24618931 | ||
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities | Q24647611 | ||
A core gut microbiome in obese and lean twins | Q24649648 | ||
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data | Q27860819 | ||
Saliva from obese individuals suppresses the release of aroma compounds from wine | Q28538972 | ||
Dirichlet multinomial mixtures: generative models for microbial metagenomics | Q28732242 | ||
Diversity components of impending primate extinctions | Q28776518 | ||
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 | Q29547403 | ||
Bacterial community variation in human body habitats across space and time | Q29547432 | ||
Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size | Q40105344 | ||
A fair comparison | Q46912423 | ||
Reply to: "a fair comparison". | Q46912428 | ||
Bayesian inference for categorical data analysis | Q55884938 | ||
A new method for non-parametric multivariate analysis of variance | Q57253406 | ||
zCompositions — R package for multivariate imputation of left-censored data under a compositional approach | Q58002985 | ||
Bayesian-multiplicative treatment of count zeros in compositional data sets | Q58002986 | ||
UniFrac: a new phylogenetic method for comparing microbial communities | Q29547435 | ||
Diet rapidly and reproducibly alters the human gut microbiome | Q29547454 | ||
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor | Q29577114 | ||
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments | Q29614452 | ||
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms | Q29614454 | ||
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample | Q29614456 | ||
Gut microbiota from twins discordant for obesity modulate metabolism in mice | Q29614796 | ||
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale | Q29617333 | ||
Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition | Q30412052 | ||
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis | Q30567356 | ||
Inferring correlation networks from genomic survey data | Q30571637 | ||
Hypothesis testing and power calculations for taxonomic-based human microbiome data | Q30584286 | ||
EMPeror: a tool for visualizing high-throughput microbial community data | Q30702273 | ||
VARIABLE SELECTION FOR SPARSE DIRICHLET-MULTINOMIAL REGRESSION WITH AN APPLICATION TO MICROBIOME DATA ANALYSIS. | Q30709584 | ||
Zero-inflated models for regression analysis of count data: a study of growth and development | Q30714487 | ||
Waste not, want not: why rarefying microbiome data is inadmissible | Q30793257 | ||
Estimating coverage in metagenomic data sets and why it matters | Q30819837 | ||
Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis | Q30829889 | ||
A taxa-area relationship for bacteria | Q33209794 | ||
Small-sample estimation of negative binomial dispersion, with applications to SAGE data | Q33295482 | ||
Statistical methods for detecting differentially abundant features in clinical metagenomic samples | Q33429043 | ||
Differential abundance analysis for microbial marker-gene surveys | Q33566352 | ||
Statistical design and analysis of RNA sequencing data | Q33571320 | ||
voom: Precision weights unlock linear model analysis tools for RNA-seq read counts | Q33741687 | ||
The treatment-naive microbiome in new-onset Crohn's disease | Q33762817 | ||
Forensic identification using skin bacterial communities | Q33778976 | ||
Application of two-part statistics for comparison of sequence variant counts | Q33918415 | ||
Evaluation of subsampling-based normalization strategies for tagged high-throughput sequencing data sets from gut microbiomes | Q34044569 | ||
Evaluating bias of illumina-based bacterial 16S rRNA gene profiles | Q34261037 | ||
A comparison of methods for differential expression analysis of RNA-seq data | Q34333243 | ||
Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data | Q34369969 | ||
Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities | Q34601325 | ||
Meta-analyses of studies of the human microbiota | Q34824829 | ||
Alterations in the gut microbiota associated with HIV-1 infection | Q34986967 | ||
UniFrac: an effective distance metric for microbial community comparison | Q35018645 | ||
Analysis of composition of microbiomes: a novel method for studying microbial composition | Q35668886 | ||
Testing species abundance models: a new bootstrap approach applied to Indo-Pacific coral reefs | Q38951788 | ||
P4510 | describes a project that uses | DESeq2 | Q113018293 |
edgeR | Q113334690 | ||
P433 | issue | 1 | |
P304 | page(s) | 27 | |
P577 | publication date | 2017-03-03 | |
P1433 | published in | Microbiome | Q27725102 |
P1476 | title | Normalization and microbial differential abundance strategies depend upon data characteristics | |
P478 | volume | 5 |
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