| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1017522391 |
| P356 | DOI | 10.1038/NMETH0910-668B |
| P932 | PMC publication ID | 2945879 |
| P698 | PubMed publication ID | 20805793 |
| P5875 | ResearchGate publication ID | 46095745 |
| P50 | author | Rob Knight | Q20657126 |
| P2093 | author name string | Jens Reeder | |
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| P433 | issue | 9 | |
| P921 | main subject | pyrosequencing | Q2342248 |
| amplicon | Q2844457 | ||
| P304 | page(s) | 668-669 | |
| P577 | publication date | 2010-09-01 | |
| P1433 | published in | Nature Methods | Q680640 |
| P1476 | title | Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions | |
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| Q39167571 | Abundant and rare picoeukaryotic sub-communities present contrasting patterns in the epipelagic waters of marginal seas in the northwestern Pacific Ocean |
| Q43692971 | Acidobacterial community responses to agricultural management of soybean in Amazon forest soils. |
| Q59806112 | Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis |
| Q33966880 | Active and total microbial communities in forest soil are largely different and highly stratified during decomposition |
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| Q38684720 | Analysis of large 16S rRNA Illumina data sets: Impact of singleton read filtering on microbial community description. |
| Q35555375 | Analysis of microbial community structure and composition in leachates from a young landfill by 454 pyrosequencing. |
| Q33659736 | Analysis of plant microbe interactions in the era of next generation sequencing technologies |
| Q39279327 | Analysis of the Fungal Diversity in Citrus Leaves with Greasy Spot Disease Symptoms. |
| Q36787151 | Analysis of the bacterial communities associated with two ant-plant symbioses |
| Q35144953 | Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys |
| Q37223525 | Analytical tools and databases for metagenomics in the next-generation sequencing era |
| Q27005869 | Ancient and modern environmental DNA |
| Q38847515 | Animal rennets as sources of dairy lactic acid bacteria |
| Q37125363 | Aquacultured rainbow trout (Oncorhynchus mykiss) possess a large core intestinal microbiota that is resistant to variation in diet and rearing density. |
| Q35663558 | Archaeal Communities in a Heterogeneous Hypersaline-Alkaline Soil. |
| Q35498275 | Arctic fungal communities associated with roots of Bistorta vivipara do not respond to the same fine-scale edaphic gradients as the aboveground vegetation |
| Q35062789 | Arctic root-associated fungal community composition reflects environmental filtering |
| Q34412019 | Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts |
| Q30608323 | Assessing the consequences of denoising marker-based metagenomic data |
| Q46296054 | Association Between Gut Microbiota and Bone Health: Potential Mechanisms and Prospective |
| Q30370532 | BOTUX: bayesian-like operational taxonomic unit examiner. |
| Q36070112 | Bacteria and Archaea diversity within the hot springs of Lake Magadi and Little Magadi in Kenya |
| Q34418800 | Bacteria and diatom co-occurrence patterns in microbial mats from polar desert streams |
| Q36103928 | Bacterial Communities Associated with Different Anthurium andraeanum L. Plant Tissues |
| Q49914293 | Bacterial Community Shift and Coexisting/Coexcluding Patterns Revealed by Network Analysis in A Bioreduced Uranium Contaminated Site after Reoxidation |
| Q37670516 | Bacterial Community and PHB-Accumulating Bacteria Associated with the Wall and Specialized Niches of the Hindgut of the Forest Cockchafer (Melolontha hippocastani) |
| Q57799766 | Bacterial and archaeal community structures in perennial cave ice |
| Q35092534 | Bacterial assembly and temporal dynamics in activated sludge of a full-scale municipal wastewater treatment plant |
| Q34340262 | Bacterial associates of seed-parasitic wasps (Hymenoptera: Megastigmus) |
| Q85635006 | Bacterial community composition and fermentation patterns in the rumen of sika deer (Cervus nippon) fed three different diets |
| Q35617163 | Bacterial community structure in treated sewage sludge with mesophilic and thermophilic anaerobic digestion. |
| Q46873912 | Bacterial degradation of Aroclor 1242 in the mycorrhizosphere soils of zucchini (Cucurbita pepo L.) inoculated with arbuscular mycorrhizal fungi |
| Q34334254 | Bacterial diversity in snow on North Pole ice floes. |
| Q36316667 | Bacterial diversity is strongly associated with historical penguin activity in an Antarctic lake sediment profile |
| Q34666223 | Bacterial endophytic communities in the grapevine depend on pest management |
| Q40064374 | Bacterial indicator taxa in soils under different long-term agricultural management |
| Q37217955 | Bayesian community-wide culture-independent microbial source tracking |
| Q41824690 | Bellman's GAP--a language and compiler for dynamic programming in sequence analysis |
| Q27330235 | Biodiversity and Activity of the Gut Microbiota across the Life History of the Insect Herbivore Spodoptera littoralis |
| Q56961653 | Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring |
| Q40074601 | Biogeography of bacterial communities exposed to progressive long-term environmental change |
| Q35654485 | Bioinformatic Amplicon Read Processing Strategies Strongly Affect Eukaryotic Diversity and the Taxonomic Composition of Communities |
| Q34225603 | Bioinformatic challenges for DNA metabarcoding of plants and animals |
| Q43329769 | Biological support media influence the bacterial biofouling community in reverse osmosis water reclamation demonstration plants |
| Q34110669 | Branched chain fatty acids reduce the incidence of necrotizing enterocolitis and alter gastrointestinal microbial ecology in a neonatal rat model |
| Q45290564 | Bromodeoxyuridine labelling and fluorescence-activated cell sorting of polyamine-transforming bacterioplankton in coastal seawater |
| Q38658327 | Burying beetles regulate the microbiome of carcasses and use it to transmit a core microbiota to their offspring |
| Q35644929 | Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant |
| Q28709618 | Capturing chloroplast variation for molecular ecology studies: a simple next generation sequencing approach applied to a rainforest tree |
| Q46629592 | Carbon constrains fungal endophyte assemblages along the timberline |
| Q35558571 | Caspase deficiency alters the murine gut microbiome |
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| Q34585233 | Changes in assembly processes in soil bacterial communities following a wildfire disturbance |
| Q35745421 | Changes in microbiota during experimental human Rhinovirus infection |
| Q34262802 | Characterization of soil bacterial assemblies in Brazilian savanna-like vegetation reveals acidobacteria dominance |
| Q35097066 | Chemical-biogeographic survey of secondary metabolism in soil |
| Q37137264 | Chronic Repression of mTOR Complex 2 Induces Changes in the Gut Microbiota of Diet-induced Obese Mice |
| Q30734273 | Clustering of fungal community internal transcribed spacer sequence data obscures taxonomic diversity. |
| Q34578657 | Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities |
| Q43750075 | Comparing clustering and pre-processing in taxonomy analysis |
| Q35613009 | Comparison of Bacterial Community Composition of Primary and Persistent Endodontic Infections Using Pyrosequencing |
| Q49461663 | Composition and Activity of Microbial Communities along the Redox Gradient of an Alkaline, Hypersaline, Lake |
| Q34165489 | Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity |
| Q35208886 | Conducting a microbiome study |
| Q37038080 | Connectivity between surface and deep waters determines prokaryotic diversity in the North Atlantic Deep Water |
| Q34487681 | Contemporary environmental variation determines microbial diversity patterns in acid mine drainage |
| Q35691624 | Context dependency and saturating effects of loss of rare soil microbes on plant productivity |
| Q54714205 | Cyanobacteria in New Zealand indigenous grasslands |
| Q37397479 | Cyanobacteria in lakes on Yungui Plateau, China are assembled via niche processes driven by water physicochemical property, lake morphology and watershed land-use |
| Q34166868 | Cyanobacterial construction of hot spring siliceous stromatolites in Yellowstone National Park |
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| Q93162364 | Deciphering the Assembly Processes of the Key Ecological Assemblages of Microbial Communities in Thirteen Full-Scale Wastewater Treatment Plants |
| Q37268271 | Decreases in average bacterial community rRNA operon copy number during succession |
| Q34439787 | Deep sequencing of Myxilla (Ectyomyxilla) methanophila, an epibiotic sponge on cold-seep tubeworms, reveals methylotrophic, thiotrophic, and putative hydrocarbon-degrading microbial associations |
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| Q36689818 | Diversified pattern of the human colorectal cancer microbiome |
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| Q35026844 | Diversity of Rickettsiales in the microbiome of the lone star tick, Amblyomma americanum |
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| Q89576323 | Dynamic and Assembly of Epiphyte and Endophyte Lactic Acid Bacteria During the Life Cycle of Origanum vulgare L |
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| Q33937931 | Effect of an oxygenating agent on oral bacteria in vitro and on dental plaque composition in healthy young adults. |
| Q35135214 | Effect of haylage and monensin supplementation on ruminal bacterial communities of feedlot cattle. |
| Q30615419 | Effect of polybrominated diphenyl ether (PBDE) treatment on the composition and function of the bacterial community in the sponge Haliclona cymaeformis |
| Q37378692 | Effects of Proton Pump Inhibitors on the Gastric Mucosa-Associated Microbiota in Dyspeptic Patients |
| Q31116630 | Effects of Short-Term Warming and Altered Precipitation on Soil Microbial Communities in Alpine Grassland of the Tibetan Plateau |
| Q58572947 | Effects of a Commercial Microbial Agent on the Bacterial Communities in Shrimp Culture System |
| Q34260965 | Effects of season and host physiological state on the diversity, density, and activity of the arctic ground squirrel cecal microbiota. |
| Q47898620 | Eikelboom filamentous morphotypes 0675 and 0041 embrace members of the Chloroflexi: resolving their phylogeny, and design of fluorescence in situ hybridisation probes for their identification. |
| Q46816362 | Electron donors and co-contaminants affect microbial community composition and activity in perchlorate degradation |
| Q30692558 | Elevated ground-level O3 negatively influences paddy methanogenic archaeal community |
| Q33674072 | Endemism and functional convergence across the North American soil mycobiome |
| Q35199140 | Enrichment of specific bacterial and eukaryotic microbes in the rhizosphere of switchgrass (Panicum virgatum L.) through root exudates |
| Q35448471 | Environmental metabarcoding reveals heterogeneous drivers of microbial eukaryote diversity in contrasting estuarine ecosystems |
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| Q34312366 | Evaluation of 16S rDNA-based community profiling for human microbiome research |
| Q41924992 | Evaluation of prokaryotic diversity of five hot springs in Eritrea |
| Q28709582 | Evidence for a persistent microbial seed bank throughout the global ocean |
| Q33848765 | Exercise induction of gut microbiota modifications in obese, non-obese and hypertensive rats |
| Q34241426 | Experimental and analytical tools for studying the human microbiome |
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| Q34794391 | Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice |
| Q34256714 | Factors that affect large subunit ribosomal DNA amplicon sequencing studies of fungal communities: classification method, primer choice, and error |
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| Q49156446 | Fast, accurate error-correction of amplicon pyrosequences using Acacia |
| Q92404641 | Fecal and Mucosal Microbiota Profiling in Irritable Bowel Syndrome and Inflammatory Bowel Disease |
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| Q35606116 | FlowClus: efficiently filtering and denoising pyrosequenced amplicons |
| Q35212103 | Forestry impacts on the hidden fungal biodiversity associated with bryophytes. |
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| Q34798636 | Functional and compositional succession of bacterioplankton in response to a gradient in bioavailable dissolved organic carbon. |
| Q46507362 | Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere |
| Q37214915 | Fungal Assemblages in Different Habitats in an Erman's Birch Forest |
| Q35846405 | Fungal Community Assembly in the Amazonian Dark Earth |
| Q34993788 | Fungal communities associated with the biodegradation of polyester polyurethane buried under compost at different temperatures |
| Q34638347 | Fungal community analysis by high-throughput sequencing of amplified markers--a user's guide |
| Q34439292 | Fungal community on decomposing leaf litter undergoes rapid successional changes |
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| Q36008945 | Fungi Sailing the Arctic Ocean: Speciose Communities in North Atlantic Driftwood as Revealed by High-Throughput Amplicon Sequencing |
| Q28830513 | Geographical Distribution of Methanogenic Archaea in Nine Representative Paddy Soils in China |
| Q42645270 | Graphene oxide electrodeposited electrode enhances start-up and selective enrichment of exoelectrogens in bioelectrochemical systems. |
| Q34412286 | Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing |
| Q64914736 | Gut Bacterial Communities of Dendroctonus valens and D. mexicanus (Curculionidae: Scolytinae): A Metagenomic Analysis across Different Geographical Locations in Mexico. |
| Q55331959 | Gut Microbiota Markers in Obese Adolescent and Adult Patients: Age-Dependent Differential Patterns. |
| Q35602080 | Gut microbiome compositional and functional differences between tumor and non-tumor adjacent tissues from cohorts from the US and Spain. |
| Q64067846 | Gut microbiota profile in children affected by atopic dermatitis and evaluation of intestinal persistence of a probiotic mixture |
| Q60046299 | Gut microbiota signatures in cystic fibrosis: Loss of host CFTR function drives the microbiota enterophenotype |
| Q59808699 | High Microbial Diversity Despite Extremely Low Biomass in a Deep Karst Aquifer |
| Q42380562 | High reactivity of deep biota under anthropogenic CO2 injection into basalt |
| Q34456984 | High temporal and spatial diversity in marine RNA viruses implies that they have an important role in mortality and structuring plankton communities |
| Q28068214 | High-Throughput Sequencing-Based Immune Repertoire Study during Infectious Disease |
| Q35115134 | High-resolution melt analysis for rapid comparison of bacterial community compositions |
| Q28597354 | Higher fungal diversity is correlated with lower CO2 emissions from dead wood in a natural forest |
| Q36203218 | Host and tissue variations overshadow the response of boreal moss-associated fungal communities to increased nitrogen load |
| Q55491426 | Host genotype-specific microbiota do not influence the susceptibility of D. magna to a bacterial pathogen. |
| Q46469639 | Hot spring siliceous stromatolites from Yellowstone National Park: assessing growth rate and laminae formation. |
| Q27319083 | IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data |
| Q39255552 | ITS all right mama: investigating the formation of chimeric sequences in the ITS2 region by DNA metabarcoding analyses of fungal mock communities of different complexities |
| Q35044349 | Identification accuracy and diversity reproducibility associated with internal transcribed spacer-based fungal taxonomic library preparation. |
| Q34342232 | Identification of bacteria utilizing biphenyl, benzoate, and naphthalene in long-term contaminated soil |
| Q35834943 | Impact of Nisin-Activated Packaging on Microbiota of Beef Burgers during Storage |
| Q34379345 | Impact of different bioenergy crops on N-cycling bacterial and archaeal communities in soil |
| Q34981695 | Impact of ileocecal resection and concomitant antibiotics on the microbiome of the murine jejunum and colon |
| Q34049711 | Impact of next generation sequencing techniques in food microbiology |
| Q46287847 | Impact of sequence processing and taxonomic classification approaches on eukaryotic community structure from environmental samples with emphasis on diatoms. |
| Q33946340 | Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys |
| Q30562037 | Implications of pyrosequencing error correction for biological data interpretation |
| Q31132010 | Improved inference of taxonomic richness from environmental DNA |
| Q34430087 | Improving indel detection specificity of the Ion Torrent PGM benchtop sequencer |
| Q42546253 | In Vivo Isotopic Labeling of Symbiotic Bacteria Involved in Cellulose Degradation and Nitrogen Recycling within the Gut of the Forest Cockchafer (Melolontha hippocastani). |
| Q30843759 | In situ environment rather than substrate type dictates microbial community structure of biofilms in a cold seep system. |
| Q37520662 | In vivo Pyro-SIP assessing active gut microbiota of the cotton leafworm, Spodoptera littoralis |
| Q34030523 | In-depth characterization via complementing culture-independent approaches of the microbial community in an acidic hot spring of the Colombian Andes. |
| Q37833805 | Increased genetic diversity and prevalence of co-infection with Trypanosoma spp. in koalas (Phascolarctos cinereus) and their ticks identified using next-generation sequencing (NGS). |
| Q30658257 | Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing data |
| Q46283421 | Interactions of plant growth-promoting rhizobacteria and soil factors in two leguminous plants. |
| Q28395712 | Intraindividual variation in core microbiota in peri-implantitis and periodontitis |
| Q36453357 | Invariant community structure of soil bacteria in subtropical coniferous and broadleaved forests |
| Q38792310 | Investigating niche partitioning of ectomycorrhizal fungi in specialized rooting zones of the monodominant leguminous tree Dicymbe corymbosa |
| Q46474949 | Investigation of ruminal bacterial diversity in dairy cattle fed supplementary monensin alone and in combination with fat, using pyrosequencing analysis. |
| Q35837264 | Legacy effects of anaerobic soil disinfestation on soil bacterial community composition and production of pathogen-suppressing volatiles. |
| Q37028126 | Light structures phototroph, bacterial and fungal communities at the soil surface |
| Q30666091 | Litter quality versus soil microbial community controls over decomposition: a quantitative analysis. |
| Q52564164 | Liver Transplantation and Gut Microbiota Profiling in a Child Colonized by a Multi-Drug Resistant Klebsiella pneumoniae: A New Approach to Move from Antibiotic to "Eubiotic" Control of Microbial Resistance. |
| Q37166253 | Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community |
| Q28589736 | Local and Regional Diversity Reveals Dispersal Limitation and Drift as Drivers for Groundwater Bacterial Communities from a Fractured Granite Formation |
| Q35802094 | Longitudinal analysis reveals characteristically high proportions of bacterial vaginosis-associated bacteria and temporal variability of vaginal microbiota in northern pig-tailed macaques (Macaca leonina). |
| Q51151850 | Lost in diversity: the interactions between soil-borne fungi, biodiversity and plant productivity. |
| Q40464944 | Mannan- and xylooligosaccharides modulate caecal microbiota and expression of inflammatory-related cytokines and reduce caecal Salmonella Enteritidis colonisation in young chickens. |
| Q34955078 | Marine sediments microbes capable of electrode oxidation as a surrogate for lithotrophic insoluble substrate metabolism |
| Q46324944 | Marked seasonality of aerobic anoxygenic phototrophic bacteria in the coastal NW Mediterranean Sea as revealed by cell abundance, pigment concentration and pyrosequencing of pufM gene |
| Q56998794 | Mathematical Approaches for Describing Microbial Populations: Practice and Theory for Extrapolation of Rich Environments |
| Q36114116 | Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life |
| Q54295735 | Meat Science and Muscle Biology Symposium: Escherichia coli O157:H7, diet, and fecal microbiome in beef cattle |
| Q35571073 | Mesophilic versus thermophilic anaerobic digestion of cattle manure: methane productivity and microbial ecology |
| Q35084719 | Meta-omic platforms to assist in the understanding of NAFLD gut microbiota alterations: tools and applications |
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| Q46026460 | Metabolic Differences between Dogs of Different Body Sizes. |
| Q28553384 | Metagenomic Analysis of Fungal Diversity on Strawberry Plants and the Effect of Management Practices on the Fungal Community Structure of Aerial Organs |
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| Q30953199 | Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies |
| Q37039721 | Metatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts |
| Q35924789 | Microbial Community Profile and Water Quality in a Protected Area of the Caatinga Biome. |
| Q41024688 | Microbial Eukaryotes in an Arctic Under-Ice Spring Bloom North of Svalbard |
| Q40124348 | Microbial Fe(III) oxide reduction potential in Chocolate Pots hot spring, Yellowstone National Park |
| Q35352567 | Microbial cargo: do bacteria on symbiotic propagules reinforce the microbiome of lichens? |
| Q35910882 | Microbial community changes along the active seepage site of one cold seep in the Red Sea. |
| Q34027982 | Microbial community structure of relict niter-beds previously used for saltpeter production |
| Q58767455 | Microbial controls on DMSP degradation and DMS formation in the Sargasso Sea |
| Q35664657 | Microbial diversity associated with copepods in the North Atlantic subtropical gyre |
| Q33805291 | Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis |
| Q40777885 | Microbial diversity in shallow-water hydrothermal sediments of Kueishan Island, Taiwan as revealed by pyrosequencing |
| Q34261268 | Microbial ecology dynamics reveal a succession in the core microbiota involved in the ripening of pasta filata caciocavallo pugliese cheese |
| Q37610052 | Microbial legacies alter decomposition in response to simulated global change |
| Q35196644 | Microbial sequencing analyses suggest the presence of a fecal veneer on indoor climbing wall holds. |
| Q28646588 | Microbially influenced corrosion communities associated with fuel-grade ethanol environments |
| Q41062571 | Microbiome analysis and confocal microscopy of used kitchen sponges reveal massive colonization by Acinetobacter, Moraxella and Chryseobacterium species |
| Q35756583 | Microbiome change by symbiotic invasion in lichens |
| Q37723526 | Mineral Ecology: Surface Specific Colonization and Geochemical Drivers of Biofilm Accumulation, Composition, and Phylogeny |
| Q35784335 | Modulation of gut microbiota by berberine and metformin during the treatment of high-fat diet-induced obesity in rats |
| Q35182493 | Molecular ecological tools to decipher the role of our microbial mass in obesity |
| Q48155225 | Mosquito vector-associated microbiota: Metabarcoding bacteria and eukaryotic symbionts across habitat types in Thailand endemic for dengue and other arthropod-borne diseases. |
| Q35068699 | Multiple ITS haplotypes in the genome of the lichenized basidiomycete Cora inversa (Hygrophoraceae): fact or artifact? |
| Q41489294 | NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL. |
| Q39811345 | Natural decay process affects the abundance and community structure of Bacteria and Archaea in Picea abies logs. |
| Q35571091 | Navigating the labyrinth: a guide to sequence-based, community ecology of arbuscular mycorrhizal fungi. |
| Q44079817 | Neotropical Andes hot springs harbor diverse and distinct planktonic microbial communities |
| Q38035255 | Next-generation sequencing approaches to understanding the oral microbiome |
| Q34376709 | Nitrogen deposition alters plant-fungal relationships: linking belowground dynamics to aboveground vegetation change. |
| Q35608317 | NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads |
| Q33933364 | Nutrient addition dramatically accelerates microbial community succession |
| Q92626616 | OGG1 deficiency alters the intestinal microbiome and increases intestinal inflammation in a mouse model |
| Q39241740 | Optical properties of dissolved organic matter relate to different depth-specific patterns of archaeal and bacterial community structure in the North Atlantic Ocean |
| Q39418843 | Oral biofilms: molecular analysis, challenges, and future prospects in dental diagnostics |
| Q33963322 | PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip |
| Q34384736 | PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets |
| Q52568344 | Partitioning of Fungal Endophyte Assemblages in Root-Parasitic Plant Cynomorium songaricum and Its Host Nitraria tangutorum. |
| Q35168417 | Patterns of bacterial diversity along a long-term mercury-contaminated gradient in the paddy soils |
| Q34595379 | Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling |
| Q35621548 | Pesticide Side Effects in an Agricultural Soil Ecosystem as Measured by amoA Expression Quantification and Bacterial Diversity Changes |
| Q28681625 | Phylogenetic analysis of a microbialite-forming microbial mat from a hypersaline lake of the Kiritimati atoll, Central Pacific |
| Q34767631 | Phylogenetic clustering increases with elevation for microbes. |
| Q30924263 | Physicochemical control of bacterial and protist community composition and diversity in Antarctic sea ice. |
| Q55463997 | PlutoF—a Web Based Workbench for Ecological and Taxonomic Research, with an Online Implementation for Fungal ITS Sequences. |
| Q28651624 | Polar front associated variation in prokaryotic community structure in Arctic shelf seafloor |
| Q36069867 | Polyphenol-rich sorghum brans alter colon microbiota and impact species diversity and species richness after multiple bouts of dextran sodium sulfate-induced colitis |
| Q36785196 | Population Dynamics of Bulking and Foaming Bacteria in a Full-scale Wastewater Treatment Plant over Five Years |
| Q39353906 | Potential benefits of the application of yeast starters in table olive processing |
| Q53276204 | Potential human pathogenic bacteria in five hot springs in Eritrea revealed by next generation sequencing. |
| Q46787723 | Primary succession of Bistorta vivipara (L.) Delabre (Polygonaceae) root-associated fungi mirrors plant succession in two glacial chronosequences |
| Q28552764 | Probing the Rare Biosphere of the North-West Mediterranean Sea: An Experiment with High Sequencing Effort |
| Q37493656 | Profiling bacterial communities associated with sediment-based aquaculture bioremediation systems under contrasting redox regimes. |
| Q34850040 | Prospecting environmental mycobacteria: combined molecular approaches reveal unprecedented diversity |
| Q92893657 | Protist diversity and community assembly in surface sediments of the South China Sea |
| Q30583395 | PyroTRF-ID: a novel bioinformatics methodology for the affiliation of terminal-restriction fragments using 16S rRNA gene pyrosequencing data |
| Q34030424 | Pyrosequencing as a tool for better understanding of human microbiomes |
| Q35628944 | Pyrosequencing characterization of the microbiota from Atlantic intertidal marine sponges reveals high microbial diversity and the lack of co-occurrence patterns |
| Q30738106 | Pyrosequencing for assessing diversity of eukaryotic microbes: analysis of data on marine planktonic ciliates and comparison with traditional methods |
| Q34981286 | Pyrosequencing of supra- and subgingival biofilms from inflamed peri-implant and periodontal sites |
| Q36177797 | Pyrosequencing of the bacteria associated with Platygyra carnosus corals with skeletal growth anomalies reveals differences in bacterial community composition in apparently healthy and diseased tissues. |
| Q35007089 | Pyrosequencing revealed SAR116 clade as dominant dddP-containing bacteria in oligotrophic NW Pacific Ocean |
| Q46798995 | Pyrosequencing revealed highly microbial phylogenetic diversity in ferromanganese nodules from farmland |
| Q42468354 | Pyrosequencing revealed shifts of prokaryotic communities between healthy and disease-like tissues of the Red Sea sponge Crella cyathophora |
| Q46902214 | Pyrosequencing reveals the microbial communities in the Red Sea sponge Carteriospongia foliascens and their impressive shifts in abnormal tissues |
| Q33832108 | Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils |
| Q34497700 | Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing |
| Q36250822 | Quantification of Chloroflexi Eikelboom morphotype 1851 for prediction and control of bulking events in municipal activated sludge plants in Japan |
| Q28654454 | RIM-DB: a taxonomic framework for community structure analysis of methanogenic archaea from the rumen and other intestinal environments |
| Q34755870 | Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections |
| Q37506806 | Rapid recovery of soil bacterial communities after wildfire in a Chinese boreal forest. |
| Q27303148 | Red fluorescent biofilm: the thick, the old, and the cariogenic |
| Q37721212 | Reducing Salinity by Flooding an Extremely Alkaline and Saline Soil Changes the Bacterial Community but Its Effect on the Archaeal Community Is Limited |
| Q34109852 | Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies |
| Q21284335 | Removing noise from pyrosequenced amplicons |
| Q33743131 | Resilience of the natural phyllosphere microbiota of the grapevine to chemical and biological pesticides. |
| Q39485177 | Resolving microbial membership using Abundance and Variability In Taxonomy ('AVIT ). |
| Q41816437 | Responses of gut microbiota to diet composition and weight loss in lean and obese mice |
| Q38369036 | Revealing higher than expected meiofaunal diversity in Antarctic sediments: a metabarcoding approach |
| Q42635437 | Revealing the gut bacteriome of Dendroctonus bark beetles (Curculionidae: Scolytinae): diversity, core members and co-evolutionary patterns |
| Q27323831 | Revisiting the dilution procedure used to manipulate microbial biodiversity in terrestrial systems. |
| Q24756993 | Salivary microbiota and metabolome associated with celiac disease |
| Q57901056 | Seasonal and Interannual Changes in Ciliate and Dinoflagellate Species Assemblages in the Arctic Ocean (Amundsen Gulf, Beaufort Sea, Canada) |
| Q31137216 | Seasonal dynamics of fungal communities in a temperate oak forest soil. |
| Q38925160 | Seasonal patterns in Arctic prasinophytes and inferred ecology of Bathycoccus unveiled in an Arctic winter metagenome |
| Q51557749 | Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454 pyrosequencing. |
| Q40285753 | Seasonal variation of bacterial endophytes in urban trees |
| Q35617441 | Selection in the host structures the microbiota associated with developing cod larvae (Gadus morhua). |
| Q35108872 | Sequence depth, not PCR replication, improves ecological inference from next generation DNA sequencing |
| Q37718278 | Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions |
| Q28730952 | Sequencing our way towards understanding global eukaryotic biodiversity |
| Q30455439 | Shining a light on dark sequencing: characterising errors in Ion Torrent PGM data |
| Q35092509 | Short-term impacts of energy wood harvesting on ectomycorrhizal fungal communities of Norway spruce saplings |
| Q35415588 | Sinonasal microbiome sampling: a comparison of techniques |
| Q34708503 | Soil bacterial community structure remains stable over a 5-year chronosequence of insect-induced tree mortality |
| Q43452514 | Soil bacterial community succession during long-term ecosystem development |
| Q56458384 | Soil extracellular enzyme activities correspond with abiotic factors more than fungal community composition |
| Q35586971 | Soil microbiome responses to the short-term effects of Amazonian deforestation. |
| Q30981347 | Sources of PCR-induced distortions in high-throughput sequencing data sets |
| Q35665962 | Space Environmental Factor Impacts upon Murine Colon Microbiota and Mucosal Homeostasis. |
| Q35988088 | Spatial Distribution of the Metabolically Active Microbiota within Italian PDO Ewes' Milk Cheeses |
| Q35867245 | Spatial Homogeneity of Bacterial Communities Associated with the Surface Mucus Layer of the Reef-Building Coral Acropora palmata |
| Q34366767 | Spatial and species variations in bacterial communities associated with corals from the Red Sea as revealed by pyrosequencing |
| Q34562453 | Spatial and temporal variations of microbial community in a mixed plug-flow loop reactor fed with dairy manure |
| Q35379683 | Spatial distribution of microbial communities associated with dune landform in the Gurbantunggut Desert, China |
| Q26827562 | Stable isotope probing in the metagenomics era: a bridge towards improved bioremediation |
| Q39006125 | Statistical test for tolerability of effects of an antifungal biocontrol strain on fungal communities in three arable soils |
| Q36167135 | Stimulated bacterioplankton growth and selection for certain bacterial taxa in the vicinity of the ctenophore Mnemiopsis leidyi |
| Q35555903 | Strong altitudinal partitioning in the distributions of ectomycorrhizal fungi along a short (300 m) elevation gradient |
| Q34677416 | Strong coupling of plant and fungal community structure across western Amazonian rainforests |
| Q37663326 | Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees |
| Q51535370 | Subgingival microbiome in smokers and non-smokers in periodontitis: an exploratory study using traditional targeted techniques and a next-generation sequencing. |
| Q34958725 | Substantial compositional turnover of fungal communities in an alpine ridge-to-snowbed gradient |
| Q27302079 | Surfactant-associated bacteria in the near-surface layer of the ocean |
| Q64230796 | Symbiont-mediated chemical defense in the invasive ladybird |
| Q35076736 | Systematic evaluation of bias in microbial community profiles induced by whole genome amplification |
| Q34694836 | Séance: reference-based phylogenetic analysis for 18S rRNA studies |
| Q33798803 | Temporal dynamics of the cecal gut microbiota of juvenile arctic ground squirrels: a strong litter effect across the first active season. |
| Q36178849 | Temporal variation overshadows the response of leaf litter microbial communities to simulated global change |
| Q34376714 | Testing potential effects of maize expressing the Bacillus thuringiensis Cry1Ab endotoxin (Bt maize) on mycorrhizal fungal communities via DNA- and RNA-based pyrosequencing and molecular fingerprinting. |
| Q34523345 | Testing three pipelines for 18S rDNA-based metabarcoding of soil faunal diversity |
| Q54281044 | The ATG16L1-T300A allele impairs clearance of pathosymbionts in the inflamed ileal mucosa of Crohn's disease patients. |
| Q46500190 | The Bacterial Community Structure and Dynamics of Carbon and Nitrogen when Maize (Zea mays L.) and Its Neutral Detergent Fibre Were Added to Soil from Zimbabwe with Contrasting Management Practices |
| Q34807464 | The Ecology of Microbial Communities Associated with Macrocystis pyrifera |
| Q35741312 | The Gut Microbiota of Wild Mice |
| Q35573449 | The Gut Microbiota of Workers of the Litter-Feeding Termite Syntermes wheeleri (Termitidae: Syntermitinae): Archaeal, Bacterial, and Fungal Communities. |
| Q46774819 | The Microbiome of Field-Caught and Laboratory-Adapted Australian Tephritid Fruit Fly Species with Different Host Plant Use and Specialisation. |
| Q92238925 | The Relative Abundance of Benthic Bacterial Phyla Along a Water-Depth Gradient in a Plateau Lake: Physical, Chemical, and Biotic Drivers |
| Q33454135 | The Western English Channel contains a persistent microbial seed bank |
| Q34760427 | The ambrosia symbiosis is specific in some species and promiscuous in others: evidence from community pyrosequencing |
| Q37497533 | The biogeography of soil archaeal communities on the eastern Tibetan Plateau. |
| Q34868000 | The core faecal bacterial microbiome of Irish Thoroughbred racehorses |
| Q33701948 | The digestive and defensive basis of carcass utilization by the burying beetle and its microbiota. |
| Q38413169 | The effects from DNA extraction methods on the evaluation of microbial diversity associated with human colonic tissue |
| Q54997389 | The effects of sequencing platforms on phylogenetic resolution in 16 S rRNA gene profiling of human feces. |
| Q58125741 | The impact of exercise training and resveratrol supplementation on gut microbiota composition in high-fat diet fed mice |
| Q35294245 | The largest subunit of RNA polymerase II as a new marker gene to study assemblages of arbuscular mycorrhizal fungi in the field |
| Q28729892 | The microbe-free plant: fact or artifact? |
| Q34382582 | The relation between oral Candida load and bacterial microbiome profiles in Dutch older adults |
| Q35174454 | The skin microbiome of caspase-14-deficient mice shows mild dysbiosis. |
| Q34330998 | The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses |
| Q33920230 | Time-resolved DNA stable isotope probing links Desulfobacterales- and Coriobacteriaceae-related bacteria to anaerobic degradation of benzene under methanogenic conditions |
| Q46949583 | Top-down control of soil fungal community composition by a globally distributed keystone consumer |
| Q35528519 | Topographical continuity of bacterial populations in the healthy human respiratory tract |
| Q35147569 | Toward understanding the dynamics of microbial communities in an estuarine system |
| Q34854752 | Tracking fungal community responses to maize plants by DNA- and RNA-based pyrosequencing |
| Q34884906 | Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill |
| Q34568195 | Transcriptome exploration in Leymus chinensis under saline-alkaline treatment using 454 pyrosequencing |
| Q28543391 | Transient changes in bacterioplankton communities induced by the submarine volcanic eruption of El Hierro (Canary Islands) |
| Q34076828 | Two decades of describing the unseen majority of aquatic microbial diversity |
| Q28652723 | Two distinct microbial communities revealed in the sponge Cinachyrella |
| Q29616627 | UPARSE: highly accurate OTU sequences from microbial amplicon reads |
| Q36419104 | Ultrafast clustering algorithms for metagenomic sequence analysis |
| Q30755503 | Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations |
| Q34447480 | Upper airways microbiota in antibiotic-naïve wheezing and healthy infants from the tropics of rural Ecuador |
| Q36006999 | Variability of Bacterial Communities in the Moth Heliothis virescens Indicates Transient Association with the Host |
| Q35145746 | Variations in 16S rRNA-based microbiome profiling between pyrosequencing runs and between pyrosequencing facilities. |
| Q36320067 | Weak Coherence in Abundance Patterns Between Bacterial Classes and Their Constituent OTUs Along a Regulated River |
| Q30786248 | When the forest dies: the response of forest soil fungi to a bark beetle-induced tree dieback |
| Q46927250 | Will different OTU delineation methods change interpretation of arbuscular mycorrhizal fungal community patterns? |
| Q35404417 | Xylo-oligosaccharides and virginiamycin differentially modulate gut microbial composition in chickens |
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