ReDU: a framework to find and reanalyze public mass spectrometry data

scientific article published on 17 August 2020

ReDU: a framework to find and reanalyze public mass spectrometry data is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1038/S41592-020-0916-7
P698PubMed publication ID32807955

P50authorRob KnightQ20657126
Pieter C. DorresteinQ25707408
Ngoc Hung NguyenQ92049318
Alexey V MelnikQ92154231
Fernando VargasQ92365629
Kelly WeldonQ92365632
Emily C GentryQ92598790
Scott A JarmuschQ92603520
Rohit S AdvaniQ98513834
Nuno BandeiraQ98513835
Mélissa Nothias-EspositoQ110834365
Christine M. AcevesQ114399166
Gajender AletiQ114399167
Allegra T. AronQ114399168
Rama ChaarQ114399169
Emmanuel O ElijahQ114399170
Morgan W. PanitchpakdiQ114399171
Nicole C. SikoraQ114399172
Kerry L. McPhailQ38328468
Audrey Le GouëllecQ47087380
Justin J J van der HooftQ50726922
Daniel PetrasQ52853382
Louis-Félix NothiasQ56885211
Madeleine ErnstQ56956307
Julia M GauglitzQ57304963
Robert A QuinnQ59027162
Zdenek KamenikQ59539190
Alison F VrbanacQ61289690
Mingxun WangQ64828966
Anelize BauermeisterQ87606290
Laura-Isobel McCallQ88282825
Alan K JarmuschQ88404038
Amina BouslimaniQ89346092
Michael T MeehanQ89759692
Andrés Mauricio Caraballo-RodriguezQ90252420
Alexander AksenovQ90407893
P2093author name stringKenneth L Jones
Riya C Menezes
Aileen Lu
Makhai Husband
Roxana Coras
Sanjana Bolleddu
Shaden Aguirre
Yessica Alejandra Montoya Giraldo
P2860cites workUberon, an integrative multi-species anatomy ontologyQ21184014
Cytoscape: a software environment for integrated models of biomolecular interaction networksQ24515682
Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis toolsQ24698644
MetaboLights: a resource evolving in response to the needs of its scientific communityQ91135365
MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation ToolsQ91962237
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular NetworkingQ27818844
Proposed minimum reporting standards for chemical analysisQ27921801
The FAIR Guiding Principles for scientific data management and stewardshipQ27942822
A new alkaloid AM-2282 OF Streptomyces origin. Taxonomy, fermentation, isolation and preliminary characterizationQ28279608
The NCBI Taxonomy databaseQ28740981
EMPeror: a tool for visualizing high-throughput microbial community dataQ30702273
The Disease Ontology: fostering interoperability between biological and clinical human disease-related dataQ30975553
Recent trends in the biochemistry of surfactinQ33677223
Age and diet effects on fecal bile acids in infantsQ43484506
In vitro metabolism of clindamycin in human liver and intestinal microsomesQ44483232
Significance estimation for large scale metabolomics annotations by spectral matchingQ46082538
3D molecular cartography using LC-MS facilitated by Optimus and 'ili software.Q47269918
The Human Microbiome and Child Growth - First 1000 Days and BeyondQ62488176
P4510describes a project that usesCytoscapeQ3699942
scikit-imageQ22442795
P577publication date2020-08-17
P1433published inNature MethodsQ680640
P1476titleReDU: a framework to find and reanalyze public mass spectrometry data

Reverse relations

cites work (P2860)
Q121982839A proteomics sample metadata representation for multiomics integration and big data analysis
Q111441836ADAP-KDB: A Spectral Knowledgebase for Tracking and Prioritizing Unknown GC–MS Spectra in the NIH’s Metabolomics Data Repository
Q108844055Advancements in capturing and mining mass spectrometry data are transforming natural products research
Q114865928Advances in Microbiome-Derived Solutions and Methodologies Are Founding a New Era in Skin Health and Care
Q109735654Advances in decomposing complex metabolite mixtures using substructure- and network-based computational metabolomics approaches
Q122615591Artificial intelligence for natural product drug discovery
Q110391829Benefiting from big data in natural products: importance of preserving foundational skills and prioritizing data quality
Q114865957Chemical Proportionality within Molecular Networks
Q114869347Comprehensive Large-Scale Integrative Analysis of Omics Data To Accelerate Specialized Metabolite Discovery
Q114865677Construction of Data Infrastructures for Identifying and Using Unknown Compounds in Foods
Q114864950Coupling Mass Spectral and Genomic Information to Improve Bacterial Natural Product Discovery Workflows
Q125446744Deciphering Complex Natural Mixtures through Metabolome Mining of Mass Spectrometry Data
Q114871494Defining Blood Plasma and Serum Metabolome by GC-MS
Q114867942Enhancing untargeted metabolomics using metadata-based source annotation
Q124694954Good practices and recommendations for using and benchmarking computational metabolomics metabolite annotation tools
Q114214383Heterogeneous multimeric metabolite ion species observed in LC-MS based metabolomics data sets
Q114865040Incorporating LC–MS/MS Analysis and the Dereplication of Natural Product Samples into an Upper-Division Undergraduate Laboratory Course
Q115707320Integrative Analytical and Computational Strategies for Qualitative and Semi-quantitative Plant Metabolome Characterization
Q111601978MEMO: Mass Spectrometry-Based Sample Vectorization to Explore Chemodiverse Datasets
Q112277970Mammalian gut metabolomes mirror microbiome composition and host phylogeny
Q113633132Mass spectrometry data on specialized metabolome of medicinal plants used in East Asian traditional medicine
Q114871768Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices
Q114868118Metabolomics Approaches to Dereplicate Natural Products from Coral-Derived Bioactive Bacteria
Q114865453Metabolomics and complementary techniques to investigate the plant phytochemical cosmos
Q108126975Metabolomics-Guided Elucidation of Plant Abiotic Stress Responses in the 4IR Era: An Overview
Q115715313New software tools, databases, and resources in metabolomics: updates from 2020
Q107740449Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater
Q114872384Past accomplishments and future challenges of the multi-omics characterization of leaf growth
Q112647230Physicochemical properties determining drug detection in skin
Q114867126Quick-start infrastructure for untargeted metabolomics analysis in GNPS
Q120993271Recent advances in mass spectrometry-based computational metabolomics
Q107034083Repository scale classification and decomposition of tandem mass spectral data
Q114873618The Fecal Microbiome and Metabolome of Pitt Hopkins Syndrome, a Severe Autism Spectrum Disorder
Q105742243The LOTUS Initiative for Open Natural Products Research: Knowledge Management through Wikidata
Q112143478The LOTUS initiative for open knowledge management in natural products research
Q114873619The year 2020 in natural product bioinformatics: an overview of the latest tools and databases
Q114868219What We Know So Far about the Metabolite-Mediated Microbiota-Intestinal Immunity Dialogue and How to Hear the Sound of This Crosstalk

Search more.