| scholarly article | Q13442814 |
| P50 | author | Zhongying Zhao | Q50782539 |
| Qiutao Ding | Q89554680 | ||
| P2093 | author name string | Runsheng Li | |
| Dongying Xie | |||
| Yu Bi | |||
| Xiaoliang Ren | |||
| P2860 | cites work | The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics | Q21092840 |
| Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq | Q24320240 | ||
| Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons | Q24598126 | ||
| Full-length transcriptome assembly from RNA-Seq data without a reference genome | Q24620766 | ||
| Mapping DNA methylation with high-throughput nanopore sequencing | Q46338910 | ||
| Conservation of mRNA and protein expression during development of C. elegans. | Q46941595 | ||
| WormBase 2017: molting into a new stage. | Q46985455 | ||
| Highly parallel direct RNA sequencing on an array of nanopores. | Q47553619 | ||
| Quantitative RNA-seq meta-analysis of alternative exon usage in C. elegans | Q47581124 | ||
| Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D. | Q48514422 | ||
| SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification | Q49025200 | ||
| Nanopore sequencing and assembly of a human genome with ultra-long reads. | Q50066036 | ||
| Genomic basis of recombination suppression in the hybrid between Caenorhabditis briggsae and C. nigoni. | Q50084379 | ||
| A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing. | Q52715446 | ||
| C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. | Q53864505 | ||
| EnrichedHeatmap: an R/Bioconductor package for comprehensive visualization of genomic signal associations. | Q55098509 | ||
| Dynamic transcriptomic m6A decoration: writers, erasers, readers and functions in RNA metabolism. | Q55261655 | ||
| Widespread Evolutionary Conservation of Alternatively Spliced Exons in Caenorhabditis | Q58184156 | ||
| De novo clustering of long reads by gene from transcriptomics data | Q61780809 | ||
| A novel L1CAM isoform with angiogenic activity generated by NOVA2-mediated alternative splicing | Q63406959 | ||
| Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity | Q64237044 | ||
| Minimap2: pairwise alignment for nucleotide sequences | Q88639235 | ||
| Comparative mitochondrial genomics reveals a possible role of a recent duplication of NADH dehydrogenase subunit 5 in gene regulation | Q90806517 | ||
| CD44 splice isoform switching determines breast cancer stem cell state | Q91258307 | ||
| Recompleting the Caenorhabditis elegans genome | Q92254348 | ||
| Increased intron retention is a post-transcriptional signature associated with progressive aging and Alzheimer's disease | Q92348657 | ||
| Pre-mRNA splicing and its regulation in Caenorhabditis elegans | Q26852245 | ||
| Trans-splicing | Q26864730 | ||
| Genome sequence of the nematode C. elegans: a platform for investigating biology | Q27860527 | ||
| The Sequence Alignment/Map format and SAMtools | Q27860966 | ||
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
| Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination | Q28742637 | ||
| BEDTools: a flexible suite of utilities for comparing genomic features | Q29547332 | ||
| Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing | Q29547470 | ||
| The landscape of C. elegans 3'UTRs | Q33593704 | ||
| Direct detection of DNA methylation during single-molecule, real-time sequencing | Q33888756 | ||
| Fast computation and applications of genome mappability | Q34140534 | ||
| The human pancreatic islet transcriptome: expression of candidate genes for type 1 diabetes and the impact of pro-inflammatory cytokines | Q34192894 | ||
| Assessment of transcript reconstruction methods for RNA-seq | Q34382192 | ||
| Successful test launch for nanopore sequencing | Q34469494 | ||
| A complete bacterial genome assembled de novo using only nanopore sequencing data | Q34480779 | ||
| Cytoplasmic Rbfox1 Regulates the Expression of Synaptic and Autism-Related Genes. | Q34505996 | ||
| Genome-wide analysis of alternative splicing in Caenorhabditis elegans | Q34548324 | ||
| Profiling the RNA editomes of wild-type C. elegans and ADAR mutants | Q35049409 | ||
| The origins, evolution, and functional potential of alternative splicing in vertebrates | Q35223510 | ||
| Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing | Q35692426 | ||
| Coordinated tissue-specific regulation of adjacent alternative 3' splice sites in C. elegans | Q35793524 | ||
| Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans | Q36285402 | ||
| Detecting DNA cytosine methylation using nanopore sequencing. | Q36285424 | ||
| CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors | Q36635707 | ||
| Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation. | Q36942407 | ||
| The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures | Q37061192 | ||
| The transcription start site landscape of C. elegans | Q37061196 | ||
| Alternative splicing and the steady-state ratios of mRNA isoforms generated by it are under strong stabilizing selection in Caenorhabditis elegans | Q37306551 | ||
| Specific down-regulation of spermatogenesis genes targeted by 22G RNAs in hybrid sterile males associated with an X-Chromosome introgression | Q37313637 | ||
| The time-resolved transcriptome of C. elegans | Q37313695 | ||
| The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community | Q37442626 | ||
| Detecting RNA modifications in the epitranscriptome: predict and validate | Q39143334 | ||
| Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events | Q40217443 | ||
| Illumina Synthetic Long Read Sequencing Allows Recovery of Missing Sequences even in the "Finished" C. elegans Genome | Q40873438 | ||
| Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells. | Q41109815 | ||
| RNA cytosine methylation analysis by bisulfite sequencing | Q42082901 | ||
| RNA-seq analysis of the C. briggsae transcriptome | Q42257010 | ||
| P433 | issue | 2 | |
| P921 | main subject | Caenorhabditis elegans | Q91703 |
| P304 | page(s) | 287-298 | |
| P577 | publication date | 2020-02-05 | |
| P1433 | published in | Genome Research | Q5533485 |
| P1476 | title | Direct full-length RNA sequencing reveals unexpected transcriptome complexity during Caenorhabditis elegans development | |
| P478 | volume | 30 |
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