| scholarly article | Q13442814 |
| P356 | DOI | 10.1038/NG1140 |
| P2888 | exact match | https://scigraph.springernature.com/pub.10.1038/ng1140 |
| P698 | PubMed publication ID | 12679813 |
| P5875 | ResearchGate publication ID | 10818048 |
| P50 | author | Lynn Doucette-Stamm | Q28914662 |
| Jean Vandenhaute | Q28914664 | ||
| Philippe Vaglio | Q40584176 | ||
| Nicolas Bertin | Q40584212 | ||
| Raymond Y Huang | Q57326773 | ||
| Marc Vidal | Q81911349 | ||
| Troy Moore | Q123705503 | ||
| P2093 | author name string | David E Hill | |
| Mark R Chance | |||
| Eric Chevet | |||
| Peter P Tolias | |||
| Hongmei Lee | |||
| Jérôme Reboul | |||
| Michael A Brasch | |||
| Siming Li | |||
| Jean-François Rual | |||
| Rekin's Janky | |||
| Jason Ptacek | |||
| Monica Martinez | |||
| James L Hartley | |||
| Sarah Jenna | |||
| James R Hudson | |||
| Christopher M Armstrong | |||
| Philippe Lamesch | |||
| Gregory A Endress | |||
| Vasilis Papasotiropoulos | |||
| Simon Boulton | |||
| Mike Snyder | |||
| Laurent Jacotot | |||
| P2860 | cites work | Initial sequencing and analysis of the human genome | Q21045365 |
| Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences | Q24336098 | ||
| WormBase: network access to the genome and biology of Caenorhabditis elegans | Q24608819 | ||
| DNA cloning using in vitro site-specific recombination | Q24622857 | ||
| Genome sequence of the nematode C. elegans: a platform for investigating biology | Q27860527 | ||
| Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs | Q28131821 | ||
| Protein interaction mapping in C. elegans using proteins involved in vulval development | Q28141447 | ||
| Global analysis of protein activities using proteome chips | Q28209011 | ||
| Large-scale transcriptional activity in chromosomes 21 and 22 | Q28216457 | ||
| Rapid screening for improved solubility of small human proteins produced as fusion proteins in Escherichia coli | Q28345106 | ||
| A new approach to decoding life: systems biology | Q29618876 | ||
| Functional annotation of a full-length Arabidopsis cDNA collection | Q31044563 | ||
| Open-reading-frame sequence tags (OSTs) support the existence of at least 17,300 genes in C. elegans | Q31878902 | ||
| A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome | Q33757687 | ||
| Microarrays of cells expressing defined cDNAs | Q33945220 | ||
| A protein trap strategy to detect GFP-tagged proteins expressed from their endogenous loci in Drosophila. | Q33952883 | ||
| Proteome-scale purification of human proteins from bacteria | Q34013888 | ||
| A biological atlas of functional maps | Q34175352 | ||
| Parallel identification of new genes in Saccharomyces cerevisiae | Q35786198 | ||
| Networking proteins in yeast | Q35902987 | ||
| The identification of two novel ligands of the FGF receptor by a yeast screening method and their activity in Xenopus development. | Q36684659 | ||
| Array-based methods for identifying protein-protein and protein-nucleic acid interactions | Q38287975 | ||
| Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome | Q38668496 | ||
| WorfDB: the Caenorhabditis elegans ORFeome Database | Q39790561 | ||
| Combined functional genomic maps of the C. elegans DNA damage response | Q44069172 | ||
| What is finished, and why does it matter | Q47616357 | ||
| Genomic exploration of the hemiascomycetous yeasts: 4. The genome of Saccharomyces cerevisiae revisited. | Q53899151 | ||
| GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes. | Q53901952 | ||
| P433 | issue | 1 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Caenorhabditis elegans | Q91703 |
| genome annotation | Q19753316 | ||
| P304 | page(s) | 35-41 | |
| P577 | publication date | 2003-05-01 | |
| P1433 | published in | Nature Genetics | Q976454 |
| P1476 | title | C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. | |
| P478 | volume | 34 |
| Q33832092 | 'Edgetic' perturbation of a C. elegans BCL2 ortholog |
| Q36873640 | A "FLP-Out" system for controlled gene expression in Caenorhabditis elegans. |
| Q27334567 | A MultiSite Gateway Toolkit for Rapid Cloning of Vertebrate Expression Constructs with Diverse Research Applications. |
| Q31096412 | A MultiSite Gateway™ vector set for the functional analysis of genes in the model Saccharomyces cerevisiae |
| Q37253833 | A PP2A regulatory subunit regulates C. elegans insulin/IGF-1 signaling by modulating AKT-1 phosphorylation |
| Q43251350 | A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks |
| Q37621437 | A first version of the Caenorhabditis elegans Promoterome |
| Q33288969 | A full-genomic sequence-verified protein-coding gene collection for Francisella tularensis |
| Q30841733 | A gateway-compatible yeast one-hybrid system. |
| Q37368943 | A gene-centered C. elegans protein-DNA interaction network provides a framework for functional predictions |
| Q21092885 | A genome annotation-driven approach to cloning the human ORFeome |
| Q33658615 | A genome-wide gene function prediction resource for Drosophila melanogaster |
| Q33756741 | A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. |
| Q29547482 | A map of the interactome network of the metazoan C. elegans |
| Q30916017 | A new approach that allows identification of intron-split peptides from mass spectrometric data in genomic databases |
| Q25257199 | A new pooling strategy for high-throughput screening: the Shifted Transversal Design |
| Q33287613 | A novel approach to sequence validating protein expression clones with automated decision making |
| Q24322661 | A protein domain-based interactome network for C. elegans early embryogenesis |
| Q42735634 | A semi-automated high-throughput approach to the generation of transposon insertion mutants in the nematode Caenorhabditis elegans |
| Q57187563 | A transcriptomic analysis of the phylum Nematoda |
| Q33934245 | Adaptive evolution in the SRZ chemoreceptor families of Caenorhabditis elegans and Caenorhabditis briggsae |
| Q34713924 | An RNAi-based suppressor screen identifies interactors of the Myt1 ortholog of Caenorhabditis elegans |
| Q24806767 | An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome |
| Q33592928 | Analysis of antisense expression by whole genome tiling microarrays and siRNAs suggests mis-annotation of Arabidopsis orphan protein-coding genes |
| Q33700017 | Association of Dishevelled with the clathrin AP-2 adaptor is required for Frizzled endocytosis and planar cell polarity signaling |
| Q33316840 | Automated production of recombinant human proteins as resource for proteome research |
| Q40633677 | BTB proteins are substrate-specific adaptors in an SCF-like modular ubiquitin ligase containing CUL-3. |
| Q29619667 | Biochemical and genetic analysis of the yeast proteome with a movable ORF collection |
| Q47068718 | Biochemical clustering of monomeric GTPases of the Ras superfamily. |
| Q51487142 | Biosynthetic Pathway Analysis for Improving the Cordycepin and Cordycepic Acid Production in Hirsutella sinensis. |
| Q28278221 | Building and analyzing protein interactome networks by cross-species comparisons |
| Q34391252 | C. elegans BLOC-1 functions in trafficking to lysosome-related gut granules |
| Q31121469 | C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions |
| Q37638348 | C. elegans nuclear receptor NHR-6 functionally interacts with the jun-1 transcription factor during spermatheca development |
| Q36562095 | C. elegans: an invaluable model organism for the proteomics studies of the cholesterol-mediated signaling pathway |
| Q26800080 | Candida glabrata: new tools and technologies-expanding the toolkit |
| Q33218861 | Cell-based microarrays: current progress, future prospects |
| Q37693462 | Cellular Proteomes Drive Tissue-Specific Regulation of the Heat Shock Response. |
| Q35744439 | Charting gene regulatory networks: strategies, challenges and perspectives. |
| Q33736275 | Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions |
| Q33378070 | Combination chemical genetics |
| Q37112499 | Comparing whole genomes using DNA microarrays |
| Q30664217 | Computer-Assisted Transgenesis of Caenorhabditis elegans for Deep Phenotyping |
| Q42845625 | Concerted action of the new Genomic Peptide Finder and AUGUSTUS allows for automated proteogenomic annotation of the Chlamydomonas reinhardtii genome. |
| Q40409676 | Concerted assembly and cloning of multiple DNA segments using in vitro site-specific recombination: functional analysis of multi-segment expression clones |
| Q94101421 | Current Awareness on Comparative and Functional Genomics |
| Q42140945 | DAF-16/FOXO and EGL-27/GATA promote developmental growth in response to persistent somatic DNA damage |
| Q92527353 | DAF-16/FOXO requires Protein Phosphatase 4 to initiate transcription of stress resistance and longevity promoting genes |
| Q33911164 | Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle |
| Q34097794 | Development of a functional genomics platform for Sinorhizobium meliloti: construction of an ORFeome. |
| Q38317785 | Development of a microscopic platform for real-time monitoring of biomolecular interactions |
| Q36208545 | Differential variation patterns between hubs and bottlenecks in human protein-protein interaction networks |
| Q24324037 | Direct and heterologous approaches to identify the LET-756/FGF interactome |
| Q89554681 | Direct full-length RNA sequencing reveals unexpected transcriptome complexity during Caenorhabditis elegans development |
| Q33978412 | Dissection of genetic pathways in C. elegans |
| Q47584734 | Distinct mechanisms for delimiting expression of four Caenorhabditis elegans transcription factor genes encoding activators or repressors |
| Q27313965 | Distinct pathogenesis and host responses during infection of C. elegans by P. aeruginosa and S. aureus |
| Q34280594 | Diversity in genetic in vivo methods for protein-protein interaction studies: from the yeast two-hybrid system to the mammalian split-luciferase system |
| Q58067825 | Effect of sampling on topology predictions of protein-protein interaction networks |
| Q34676654 | Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network |
| Q21202064 | Engineering BioBrick vectors from BioBrick parts |
| Q48246414 | Enhancement of Nucleoside Production in Hirsutella sinensis Based on Biosynthetic Pathway Analysis |
| Q79761801 | Enzyme free cloning for high throughput gene cloning and expression |
| Q35217901 | European consortia building integrated resources for Arabidopsis functional genomics. |
| Q37620156 | Evolution of biomolecular networks: lessons from metabolic and protein interactions |
| Q42373221 | Exploring Potential Germline-Associated Roles of the TRIM-NHL Protein NHL-2 Through RNAi Screening |
| Q49168922 | Finding function in novel targets: C. elegans as a model organism. |
| Q33270380 | Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology |
| Q36960940 | From genes to function: the C. elegans genetic toolbox |
| Q33932567 | Functional modularity of nuclear hormone receptors in a Caenorhabditis elegans metabolic gene regulatory network |
| Q34313017 | GFSWeb: a web tool for genome-based identification of proteins from mass spectrometric samples |
| Q39768366 | GTPase-mediated regulation of the unfolded protein response in Caenorhabditis elegans is dependent on the AAA+ ATPase CDC-48. |
| Q49359137 | Gateway Recombinational Cloning. |
| Q35899144 | Gateway compatible vectors for analysis of gene function in the zebrafish. |
| Q34036000 | Gateway(®) recombinational cloning: a biological operating system |
| Q27314114 | Gene activation using FLP recombinase in C. elegans |
| Q40299773 | Gene prediction and verification in a compact genome with numerous small introns |
| Q33723569 | Gene-Centered Yeast One-Hybrid Assays |
| Q26829201 | Gene-centered regulatory network mapping |
| Q54330885 | Gene-centered yeast one-hybrid assays. |
| Q57168331 | Generating genomic platforms to study Candida albicans pathogenesis |
| Q33361593 | Generation and validation of a Shewanella oneidensis MR-1 clone set for protein expression and phage display |
| Q33261158 | Generation of RNAi libraries for high-throughput screens |
| Q38509587 | Generation of expression clone set for functional proteomics of human gastric and liver cancers |
| Q31121476 | Generation of the Brucella melitensis ORFeome version 1.1. |
| Q24618467 | Genome annotation by high-throughput 5' RNA end determination |
| Q33649729 | Genome-wide analysis reveals novel genes essential for heme homeostasis in Caenorhabditis elegans |
| Q35192240 | Genome-wide screen identifies a novel p97/CDC-48-dependent pathway regulating ER-stress-induced gene transcription |
| Q33635370 | Getting a grip on complexes |
| Q91452624 | High-Throughput Yeast One-Hybrid Screens Using a Cell Surface gLUC Reporter |
| Q42858941 | High-quality binary interactome mapping |
| Q24651397 | High-quality binary protein interaction map of the yeast interactome network |
| Q34606151 | High-throughput cloning and expression library creation for functional proteomics |
| Q37621425 | High-throughput computational and experimental techniques in structural genomics |
| Q37621368 | High-throughput expression of C. elegans proteins. |
| Q31150413 | High-throughput expression, purification, and characterization of recombinant Caenorhabditis elegans proteins |
| Q28817960 | High-throughput fluorescence-based isolation of live C. elegans larvae |
| Q44867617 | High-throughput proteomics for alcohol research |
| Q38019869 | History of protein-protein interactions: from egg-white to complex networks |
| Q24560002 | Human ORFeome version 1.1: a platform for reverse proteomics |
| Q33568869 | Identification of a nematode chemosensory gene family |
| Q37322719 | Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing |
| Q33279455 | Identification of the C. elegans anaphase promoting complex subunit Cdc26 by phenotypic profiling and functional rescue in yeast |
| Q33767135 | Identifying novel genes in C. elegans using SAGE tags |
| Q21145670 | Improving the Caenorhabditis elegans genome annotation using machine learning |
| Q57021735 | Integration of Stress Signaling in Through Cell Non-autonomous Contributions of the JNK Homolog KGB-1 |
| Q28301622 | Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project |
| Q36069223 | Interactome modeling |
| Q29615773 | Interactome networks and human disease |
| Q36257382 | Interactome: gateway into systems biology |
| Q42635542 | Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome. |
| Q34194189 | Large-scale functional RNAi screen in C. elegans identifies genes that regulate the dysfunction of mutant polyglutamine neurons. |
| Q40313768 | Large-scale, high-throughput validation of short hairpin RNA sequences for RNA interference |
| Q35669372 | Libraries for two-hybrid screening of yeast and hyphal growth forms in Zymoseptoria tritici |
| Q50239529 | Live imaging of cellular dynamics during Caenorhabditis elegans postembryonic development. |
| Q37802219 | Mass spectrometry at the interface of proteomics and genomics |
| Q41941343 | Massively parallel sequencing of the polyadenylated transcriptome of C. elegans |
| Q33288695 | Matrix and Steiner-triple-system smart pooling assays for high-performance transcription regulatory network mapping |
| Q35574644 | Microarrays to characterize protein interactions on a whole‐proteome scale |
| Q38104272 | Microfluidic large scale integration of viral-host interaction analysis |
| Q31137952 | Modeling of protein binary complexes using structural mass spectrometry data |
| Q33921384 | MosSCI and gateway compatible plasmid toolkit for constitutive and inducible expression of transgenes in the C. elegans germline |
| Q33212026 | Mouse protein arrays from a TH1 cell cDNA library for antibody screening and serum profiling |
| Q43415018 | Neuroimmune regulation of antimicrobial peptide expression by a noncanonical TGF-beta signaling pathway in Caenorhabditis elegans epidermis |
| Q33780650 | New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones |
| Q46144671 | Novel cell surface luciferase reporter for high-throughput yeast one-hybrid screens. |
| Q36722812 | Nuclear hormone receptors as mediators of metabolic adaptability following reproductive perturbations |
| Q33196077 | ORFDB: an information resource linking scientific content to a high-quality Open Reading Frame (ORF) collection |
| Q33249032 | ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe |
| Q53863157 | ORFeomics: correcting the wiggle in worm genes |
| Q33294325 | One step construction of PCR mutagenized libraries for genetic analysis by recombination cloning |
| Q27342393 | PDP-1 links the TGF-β and IIS pathways to regulate longevity, development, and metabolism |
| Q90251987 | PRP-19, a conserved pre-mRNA processing factor and E3 ubiquitin ligase, inhibits the nuclear accumulation of GLP-1/Notch intracellular domain |
| Q40829924 | PathFinder: mining signal transduction pathway segments from protein-protein interaction networks |
| Q35551611 | Preparation of recombinant protein spotted arrays for proteome-wide identification of kinase targets |
| Q24673598 | Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions |
| Q36143400 | Protein biochips: A new and versatile platform technology for molecular medicine |
| Q33197916 | Protein interaction mapping on a functional shotgun sequence of Rickettsia sibirica |
| Q24678264 | Protein microarray technology |
| Q36488697 | Proteome chips for whole-organism assays |
| Q57990710 | Proteome expression moves in vitro: resources and tools for harnessing the human proteome |
| Q36567052 | Proteome-scale analysis of biochemical activity |
| Q35758816 | Proteomics in postgenomic neuroscience: the end of the beginning. |
| Q41380855 | RNA Binding Protein Vigilin Collaborates with miRNAs To Regulate Gene Expression for Caenorhabditis elegans Larval Development |
| Q33579078 | RNA Interference in Caenorhabditis elegans. |
| Q42257010 | RNA-seq analysis of the C. briggsae transcriptome |
| Q36222804 | Rapid Production of Virus Protein Microarray Using Protein Microarray Fabrication through Gene Synthesis (PAGES). |
| Q42714619 | Regulation of membrane trafficking by a novel Cdc42-related protein in Caenorhabditis elegans epithelial cells. |
| Q51976855 | Robotic cloning and Protein Production Platform of the Northeast Structural Genomics Consortium. |
| Q35751951 | Role of T-box gene tbx-2 for anterior foregut muscle development in C. elegans |
| Q25257790 | SGCEdb: a flexible database and web interface integrating experimental results and analysis for structural genomics focusing on Caenorhabditis elegans |
| Q30009888 | SH3 interactome conserves general function over specific form. |
| Q34395310 | SLX-1 is required for maintaining genomic integrity and promoting meiotic noncrossovers in the Caenorhabditis elegans germline |
| Q24310765 | SPE-39 family proteins interact with the HOPS complex and function in lysosomal delivery |
| Q24311561 | Shifted Transversal Design smart-pooling for high coverage interactome mapping |
| Q54568714 | Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations. |
| Q29617695 | Single-copy insertion of transgenes in Caenorhabditis elegans |
| Q30373264 | Site-specific recombinational cloning using gateway and in-fusion cloning schemes |
| Q35744461 | Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance |
| Q30391641 | Structural and functional analysis of human prostatic acid phosphatase |
| Q27318485 | Sumoylated NHR-25/NR5A regulates cell fate during C. elegans vulval development |
| Q46622769 | Systematic analysis of genes required for synapse structure and function |
| Q28237409 | Systematic genome-wide screens of gene function |
| Q40583898 | Systematic interactome mapping and genetic perturbation analysis of a C. elegans TGF-beta signaling network |
| Q47069444 | TLR-independent control of innate immunity in Caenorhabditis elegans by the TIR domain adaptor protein TIR-1, an ortholog of human SARM. |
| Q37538089 | TetraThymosinbeta is required for actin dynamics in Caenorhabditis elegans and acts via functionally different actin-binding repeats |
| Q35629132 | The C. elegans Myt1 ortholog is required for the proper timing of oocyte maturation |
| Q34727141 | The C. elegans gene pan-1 encodes novel transmembrane and cytoplasmic leucine-rich repeat proteins and promotes molting and the larva to adult transition |
| Q45097961 | The C. elegans methionine aminopeptidase 2 analog map-2 is required for germ cell proliferation. |
| Q34490008 | The C. elegans rab family: identification, classification and toolkit construction |
| Q35102638 | The Caenorhabditis elegans paxillin orthologue, PXL-1, is required for pharyngeal muscle contraction and for viability |
| Q29618643 | The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data |
| Q36492458 | The ICln interactome. |
| Q26787037 | The New State of the Art: Cas9 for Gene Activation and Repression |
| Q33239135 | The PLAC1-homology region of the ZP domain is sufficient for protein polymerisation |
| Q28288305 | The Pseudomonas aeruginosa PA01 gene collection |
| Q30278653 | The Xenopus ORFeome: A resource that enables functional genomics. |
| Q21194877 | The draft genome sequence of the nematode Caenorhabditis briggsae, a companion to C. elegans |
| Q21092840 | The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics |
| Q36402764 | The genomic view of genes responsive to the antagonistic phytohormones, abscisic acid, and gibberellin |
| Q33593704 | The landscape of C. elegans 3'UTRs |
| Q36429056 | The many facets of SC function during C. elegans meiosis |
| Q37694668 | The mouse genome: experimental examination of gene predictions and transcriptional start sites |
| Q34668519 | The significance of alternative transcripts for Caenorhabditis elegans transcription factor genes, based on expression pattern analysis |
| Q28770084 | Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library |
| Q21735930 | Towards a proteome-scale map of the human protein–protein interaction network |
| Q40473877 | Transcription Factor Activity Mapping of a Tissue-Specific in vivo Gene Regulatory Network. |
| Q38299638 | Transcriptional regulation of AQP-8, a Caenorhabditis elegans aquaporin exclusively expressed in the excretory system, by the POU homeobox transcription factor CEH-6. |
| Q35128057 | Transcriptome sequencing and analysis of the entomopathogenic fungus Hirsutella sinensis isolated from Ophiocordyceps sinensis |
| Q64062648 | Transcriptomics-Based Screening Identifies Pharmacological Inhibition of Hsp90 as a Means to Defer Aging |
| Q26782178 | TransgeneOmics--A transgenic platform for protein localization based function exploration |
| Q33677404 | UNC-83 coordinates kinesin-1 and dynein activities at the nuclear envelope during nuclear migration |
| Q33292491 | Ubiquitin conjugating enzymes participate in polyglutamine protein aggregation |
| Q36915095 | Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations |
| Q35209987 | Vertebrate gene predictions and the problem of large genes |
| Q27490817 | ViralORFeome: an integrated database to generate a versatile collection of viral ORFs |
| Q35557735 | What does biologically meaningful mean? A perspective on gene regulatory network validation |
| Q37621433 | WormBase as an integrated platform for the C. elegans ORFeome |
| Q34284591 | WormBase: a multi-species resource for nematode biology and genomics |
| Q38033923 | Yeast one-hybrid assays: a historical and technical perspective |
| Q38684563 | atz-1 Influences meiosis to maintain germline chromosomal stability in Caenorhabditis elegans |
| Q28282212 | hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes |
| Q36328696 | unc-94 encodes a tropomodulin in Caenorhabditis elegans |
| Q30998143 | vALId: validation of protein sequence quality based on multiple alignment data |
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