The landscape of C. elegans 3'UTRs

scientific article

The landscape of C. elegans 3'UTRs is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2010Sci...329..432M
P356DOI10.1126/SCIENCE.1191244
P932PMC publication ID3142571
P698PubMed publication ID20522740
P5875ResearchGate publication ID44648764

P50authorNikolaus RajewskyQ1991647
Vishal KhivansaraQ63953167
Marc VidalQ81911349
Yuji KoharaQ89746160
Yutaka SuzukiQ90338574
Sumio SuganoQ28028948
Jean Thierry-MiegQ29840491
Danielle Thierry-MiegQ29840494
Kourosh Salehi-AshtianiQ38155027
Marco MangoneQ43105180
Arun Prasad ManoharanQ57328200
Sebastian D MackowiakQ63434934
P2093author name stringKevin Chen
Fabio Piano
John K Kim
Ting Han
Timothy T Harkins
Kristin C Gunsalus
Charles Zegar
Oliver Attie
Pascal Bouffard
Emily Mis
Michelle R Gutwein
P2860cites workAceView: a comprehensive cDNA-supported gene and transcripts annotationQ21184141
WormBase: network access to the genome and biology of Caenorhabditis elegansQ24608819
MicroRNAs: target recognition and regulatory functionsQ24609584
Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegansQ24632455
WormBase: a comprehensive resource for nematode researchQ24642944
UTRome.org: a platform for 3'UTR biology in C. elegansQ24650159
Deadenylation of maternal mRNAs mediated by miR-427 in Xenopus laevis embryosQ24654193
A microRNA polycistron as a potential human oncogeneQ27860720
Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tailQ28297786
The protein that binds the 3' end of histone mRNA: a novel RNA-binding protein required for histone pre-mRNA processingQ28299240
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAsQ29547837
A PUF family portrait: 3'UTR regulation as a way of lifeQ30080015
Histone gene expression and histone mRNA 3' end structure in Caenorhabditis elegansQ33287801
Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tagsQ33350082
Role of 5'- and 3'-untranslated regions of mRNAs in human diseasesQ34016479
A global analysis of Caenorhabditis elegans operonsQ34134326
Interplay between AAUAAA and the trans-splice site in processing of a Caenorhabditis elegans operon pre-mRNA.Q34363355
Mechanisms of translational control by the 3' UTR in development and differentiationQ36013975
Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogasterQ37269860
A first version of the Caenorhabditis elegans PromoteromeQ37621437
Massively parallel sequencing of the polyadenylated transcriptome of C. elegansQ41941343
C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.Q53864505
A Genome-Wide Map of Conserved MicroRNA Targets in C. elegansQ61988326
P433issue5990
P407language of work or nameEnglishQ1860
P921main subjectCaenorhabditis elegansQ91703
P1104number of pages4
P304page(s)432-435
P577publication date2010-06-03
P1433published inScienceQ192864
P1476titleThe landscape of C. elegans 3'UTRs
P478volume329

Reverse relations

cites work (P2860)
Q500271163' UTR lengthening as a novel mechanism in regulating cellular senescence.
Q917712483'-UTRs and the Control of Protein Expression in Space and Time
Q342487683'LIFE: a functional assay to detect miRNA targets in high-throughput
Q36588985A compendium of Caenorhabditis elegans RNA binding proteins predicts extensive regulation at multiple levels
Q57793016A genome-wide Epstein-Barr virus polyadenylation map and its antisense RNA to EBNA
Q42095349A microRNA family exerts maternal control on sex determination in C. elegans
Q46266422A microRNA feedback loop regulates global microRNA abundance during aging
Q33880484A multiplex RNA-seq strategy to profile poly(A+) RNA: application to analysis of transcription response and 3' end formation.
Q33878175A non-canonical site reveals the cooperative mechanisms of microRNA-mediated silencing
Q35596075A novel member of the let-7 microRNA family is associated with developmental transitions in filarial nematode parasites
Q36021683A quantitative atlas of polyadenylation in five mammals
Q34744482A subset of histone H2B genes produces polyadenylated mRNAs under a variety of cellular conditions
Q37308761A viral genome landscape of RNA polyadenylation from KSHV latent to lytic infection
Q42317731A-to-I RNA editing promotes developmental stage-specific gene and lncRNA expression
Q26998409All's well that ends well: alternative polyadenylation and its implications for stem cell biology
Q36824347Alterations in polyadenylation and its implications for endocrine disease
Q40953780Alternative Poly(A) Tails Meet miRNA Targeting in Caenorhabditis elegans
Q33877485Alternative Polyadenylation Directs Tissue-Specific miRNA Targeting in Caenorhabditis elegans Somatic Tissues
Q89051609Alternative Polyadenylation of Mammalian Transcripts Is Generally Deleterious, Not Adaptive
Q47095849Alternative Polyadenylation: Methods, Findings, and Impacts
Q26864222Alternative cleavage and polyadenylation: the long and short of it
Q36630940Alternative polyadenylation can regulate post-translational membrane localization
Q36418590Alternative polyadenylation: new insights from global analyses
Q41125131An efficient method for genome-wide polyadenylation site mapping and RNA quantification
Q36280750An in-depth map of polyadenylation sites in cancer
Q88588611An integrative model for alternative polyadenylation, IntMAP, delineates mTOR-modulated endoplasmic reticulum stress response
Q42348646Analyses of alternative polyadenylation: from old school biochemistry to high-throughput technologies.
Q36106993Analysis of C. elegans intestinal gene expression and polyadenylation by fluorescence-activated nuclei sorting and 3'-end-seq
Q36575994Analysis of alternative cleavage and polyadenylation by 3' region extraction and deep sequencing.
Q35392744Asymmetric transcript discovery by RNA-seq in C. elegans blastomeres identifies neg-1, a gene important for anterior morphogenesis.
Q33629564Bioinformatics analysis of alternative polyadenylation in green alga Chlamydomonas reinhardtii using transcriptome sequences from three different sequencing platforms
Q39443445Brain-derived neurotrophic factor expression is repressed during myogenic differentiation by miR-206.
Q37603912Brain-expressed 3'UTR extensions strengthen miRNA cross-talk between ion channel/transporter encoding mRNAs
Q34297012CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification
Q34027447CFIm25 links alternative polyadenylation to glioblastoma tumour suppression.
Q36296247CSR-1 RNAi pathway positively regulates histone expression in C. elegans
Q90848690Caenorhabditis elegans as an emerging model system in environmental epigenetics
Q57980365Cell Polarity in One-Cell C. elegans Embryos: Ensuring an Accurate and Precise Spatial Axis During Development
Q35922358Combined analysis of microRNome and 3'-UTRome reveals a species-specific regulation of progesterone receptor expression in the endometrium of rhesus monkey.
Q35129174Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles
Q34045466Comparative analysis of neural transcriptomes and functional implication of unannotated intronic expression
Q34706714Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq
Q37336432Comprehensive mapping and analysis of Kaposi's sarcoma-associated herpesvirus 3' UTRs identify differential posttranscriptional control of gene expression in lytic versus latent infection.
Q34498318Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation
Q30698740Compression of structured high-throughput sequencing data
Q28727243Computational identification of new structured cis-regulatory elements in the 3'-untranslated region of human protein coding genes
Q34660508Computational methods for transcriptome annotation and quantification using RNA-seq
Q36976457Concentrating pre-mRNA processing factors in the histone locus body facilitates efficient histone mRNA biogenesis.
Q36942407Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation.
Q34085568Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data
Q36406376Context-dependent modulation of Pol II CTD phosphatase SSUP-72 regulates alternative polyadenylation in neuronal development
Q36446208Contributions of mRNA abundance, ribosome loading, and post- or peri-translational effects to temporal repression of C. elegans heterochronic miRNA targets
Q34867860Core promoter T-blocks correlate with gene expression levels in C. elegans
Q36097488De novo assembly and transcriptome analysis of two contrary tillering mutants to learn the mechanisms of tillers outgrowth in switchgrass (Panicum virgatum L.).
Q64102210Detection of Differentially Expressed Cleavage Site Intervals Within 3' Untranslated Regions Using CSI-UTR Reveals Regulated Interaction Motifs
Q35661330Detection of miRNA Targets in High-throughput Using the 3'LIFE Assay
Q48502750Developmental dynamics of gene expression and alternative polyadenylation in the Caenorhabditis elegans germline.
Q34867927Differential genome-wide profiling of tandem 3' UTRs among human breast cancer and normal cells by high-throughput sequencing.
Q34599797Differential microRNA regulation correlates with alternative polyadenylation pattern between breast cancer and normal cells
Q89554681Direct full-length RNA sequencing reveals unexpected transcriptome complexity during Caenorhabditis elegans development
Q42442592Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.
Q34985077Distinct polyadenylation landscapes of diverse human tissues revealed by a modified PA-seq strategy
Q34123037Diversity and dynamics of the Drosophila transcriptome
Q41951652Driving glioblastoma growth by alternative polyadenylation
Q36285394Dynamic landscape of tandem 3' UTRs during zebrafish development
Q35602212Evaluation of two statistical methods provides insights into the complex patterns of alternative polyadenylation site switching
Q64934390Evolutionary and functional implications of 3' untranslated region length of mRNAs by comprehensive investigation among four taxonomically diverse metazoan species.
Q46267134ExUTR: a novel pipeline for large-scale prediction of 3'-UTR sequences from NGS data
Q35861396Exploiting Drosophila genetics to understand microRNA function and regulation
Q36589002Extensive transcript diversity and novel upstream open reading frame regulation in yeast
Q24598773Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs
Q34109773Fungal virulence and development is regulated by alternative pre-mRNA 3'end processing in Magnaporthe oryzae
Q26829201Gene-centered regulatory network mapping
Q34390588Genetics and regulatory impact of alternative polyadenylation in human B-lymphoblastoid cells
Q37347972Genome-Wide Analysis of Polyadenylation Events in Schmidtea mediterranea
Q64111389Genome-Wide Comparative Analyses of Polyadenylation Signals in Eukaryotes Suggest a Possible Origin of the AAUAAA Signal
Q26992052Genome-wide alternative polyadenylation in animals: insights from high-throughput technologies
Q34548324Genome-wide analysis of alternative splicing in Caenorhabditis elegans
Q41858295Genome-wide analysis of poly(A) site selection in Schizosaccharomyces pombe
Q35076980Genome-wide analysis of the 5' and 3' ends of vaccinia virus early mRNAs delineates regulatory sequences of annotated and anomalous transcripts
Q33984553Genome-wide determination of poly(A) sites in Medicago truncatula: evolutionary conservation of alternative poly(A) site choice.
Q37461596Genome-wide dynamics of alternative polyadenylation in rice.
Q38201607Genome-wide identification and predictive modeling of polyadenylation sites in eukaryotes
Q34787276Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation
Q35134212Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation.
Q36397851Genome-wide profiling of the 3' ends of polyadenylated RNAs
Q34477506Genomic differentiation between temperate and tropical Australian populations of Drosophila melanogaster
Q34332382Global characterization of the oocyte-to-embryo transition in Caenorhabditis elegans uncovers a novel mRNA clearance mechanism
Q41033532Global estimation of the 3' untranslated region landscape using RNA sequencing
Q36011842Global patterns of tissue-specific alternative polyadenylation in Drosophila
Q35879587IVT-SAPAS: Low-Input and Rapid Method for Sequencing Alternative Polyadenylation Sites
Q42152221Identification of 3' gene ends using transcriptional and genomic conservation across vertebrates
Q30586121Identification of genes in toxicity pathways of trinucleotide-repeat RNA in C. elegans
Q34497400Identification of transcription start sites of trans-spliced genes: uncovering unusual operon arrangements
Q34338283Incorporating RNA-seq data into the zebrafish Ensembl genebuild
Q28301622Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
Q35823834Integrative genome-wide analysis reveals HLP1, a novel RNA-binding protein, regulates plant flowering by targeting alternative polyadenylation
Q47949168Lengthening of 3'UTR increases with morphological complexity in animal evolution
Q36446242Long noncoding RNAs in C. elegans
Q35428528Mapping 3' mRNA isoforms on a genomic scale.
Q59337332Mapping the Pax6 3' untranslated region microRNA regulatory landscape
Q33886396Massive-scale RNA-Seq analysis of non ribosomal transcriptome in human trisomy 21.
Q26852702Mechanisms and consequences of alternative polyadenylation
Q34142992MicroRNA binding sites in C. elegans 3' UTRs
Q33921384MosSCI and gateway compatible plasmid toolkit for constitutive and inducible expression of transgenes in the C. elegans germline
Q34883412Multilayer regulatory mechanisms control cleavage factor I proteins in filamentous fungi.
Q35109828Multiplex analysis of polyA-linked sequences (MAPS): an RNA-seq strategy to profile poly(A+) RNA
Q36560001New insights into the Plasmodium vivax transcriptome using RNA-Seq
Q37012234PA-seq for Global Identification of RNA Polyadenylation Sites of Kaposi's Sarcoma-Associated Herpesvirus Transcripts
Q35669398PAT-seq: a method to study the integration of 3'-UTR dynamics with gene expression in the eukaryotic transcriptome
Q50893917PRIMA: a gene-centered, RNA-to-protein method for mapping RNA-protein interactions.
Q36225693Pervasive initiation and 3'-end formation of poxvirus postreplicative RNAs
Q30489603PlantAPA: A Portal for Visualization and Analysis of Alternative Polyadenylation in Plants
Q36305636Poly(A) binding protein nuclear 1 levels affect alternative polyadenylation
Q40951868Poly(A)-ClickSeq: click-chemistry for next-generation 3΄-end sequencing without RNA enrichment or fragmentation
Q50773445Polypyrimidine tract binding protein homologs from Arabidopsis are key regulators of alternative splicing with implications in fundamental developmental processes.
Q35210897Post-transcriptional regulation of early embryogenesis
Q26746120Processing and transcriptome expansion at the mRNA 3' end in health and disease: finding the right end
Q34599019Profiling of alternative polyadenylation sites in luminal B breast cancer using the SAPAS method
Q35226425Properties and kinetics of microRNA regulation through canonical seed sites
Q36580857Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica
Q34264041RIP-chip-SRM--a new combinatorial large-scale approach identifies a set of translationally regulated bantam/miR-58 targets in C. elegans
Q35970109RNA regulatory elements and polyadenylation in plants
Q35538309RNA-Seq profiling of single bovine oocyte transcript abundance and its modulation by cytoplasmic polyadenylation
Q42257010RNA-seq analysis of the C. briggsae transcriptome
Q42109376Recurrent rewiring and emergence of RNA regulatory networks.
Q28084486Regulatory roles of RNA binding proteins in the nervous system of C. elegans
Q64263525Root Hair Single Cell Type Specific Profiles of Gene Expression and Alternative Polyadenylation Under Cadmium Stress
Q92057815SapTrap Assembly of Caenorhabditis elegans MosSCI Transgene Vectors
Q27001247Seeing elegance in gene regulatory networks of the worm
Q35671541Signals for pre-mRNA cleavage and polyadenylation
Q42071505Switch-like regulation of tissue-specific alternative pre-mRNA processing patterns revealed by customized fluorescence reporters
Q90569769TAPAS: tool for alternative polyadenylation site analysis
Q27308477The CaM Kinase CMK-1 Mediates a Negative Feedback Mechanism Coupling the C. elegans Glutamate Receptor GLR-1 with Its Own Transcription
Q47715179The contribution of alternative polyadenylation to the cancer phenotype
Q42353460The drive to generate multiple forms of oncogenic cyclin D1 transcripts in mantle cell lymphoma
Q30587273The embryonic mir-35 family of microRNAs promotes multiple aspects of fecundity in Caenorhabditis elegans
Q35838270The export factor Yra1 modulates mRNA 3' end processing.
Q89554679The full-length transcriptome of C. elegans using direct RNA sequencing
Q34980907The new face of the old molecules: crustin Pm4 and transglutaminase type I serving as rnps down-regulate astakine-mediated hematopoiesis
Q36256079Tissue resolved, gene structure refined equine transcriptome
Q39021067Tissue-specific regulation of alternative polyadenylation represses expression of a neuronal ankyrin isoform in C. elegans epidermal development
Q38603201Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Q36076247Transcriptional interference networks coordinate the expression of functionally related genes clustered in the same genomic loci
Q38117116Transcriptional regulation of gene expression in C. elegans
Q35195969Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing.
Q36295306Transcriptome sequencing and de novo analysis for Ma bamboo (Dendrocalamus latiflorus Munro) using the Illumina platform
Q33947997Transcriptome sequencing and de novo analysis for Yesso scallop (Patinopecten yessoensis) using 454 GS FLX.
Q38016101Translational control by changes in poly(A) tail length: recycling mRNAs.
Q34636227Translational control of the oogenic program by components of OMA ribonucleoprotein particles in Caenorhabditis elegans
Q35293750Trimethylation of Lys36 on H3 restricts gene expression change during aging and impacts life span
Q45347360Two distinct transcription termination modes dictated by promoters
Q27014268Uncovering new functions for microRNAs in Caenorhabditis elegans
Q35145730Unusual regulation of splicing of the cholinergic locus in Caenorhabditis elegans
Q36895137WormBase: Annotating many nematode genomes
Q24617775ePAT: a simple method to tag adenylated RNA to measure poly(A)-tail length and other 3' RACE applications
Q35907923miR-Sens--a retroviral dual-luciferase reporter to detect microRNA activity in primary cells

Search more.