OrthoList: a compendium of C. elegans genes with human orthologs

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OrthoList: a compendium of C. elegans genes with human orthologs is …
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P819ADS bibcode2011PLoSO...620085S
P356DOI10.1371/JOURNAL.PONE.0020085
P932PMC publication ID3102077
P698PubMed publication ID21647448
P5875ResearchGate publication ID51197557

P50authorDaniel D. ShayeQ44246333
P2093author name stringIva Greenwald
P2860cites workImproving Hox protein classification across the major model organismsQ21136361
The COG database: an updated version includes eukaryotesQ21284294
Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomicsQ22254097
Analysis of Protein Domain Families inCaenorhabditis elegansQ56878447
Gene ontology: tool for the unification of biologyQ23781406
Two functionally distinct Axin-like proteins regulate canonical Wnt signaling in C. elegansQ24315940
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groupsQ24538674
Systematic analysis and nomenclature of mammalian F-box proteinsQ24561715
Regulation of DAF-2 receptor signaling by human insulin and ins-1, a member of the unusually large and diverse C. elegans insulin gene familyQ24602369
InParanoid 7: new algorithms and tools for eukaryotic orthology analysisQ24643054
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebratesQ24644266
TreeFam: 2008 UpdateQ24650511
InterPro: the integrative protein signature databaseQ24655685
SMART 6: recent updates and new developmentsQ24655795
Database resources of the National Center for Biotechnology InformationQ24683601
Basic local alignment search toolQ25938991
An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegansQ27312196
Genome sequence of the nematode C. elegans: a platform for investigating biologyQ27860527
Systematic functional analysis of the Caenorhabditis elegans genome using RNAiQ27860839
OrthoMCL: Identification of Ortholog Groups for Eukaryotic GenomesQ27860860
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegansQ27860867
Nuclear receptors in nematodes: themes and variationsQ28207413
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE projectQ28301622
Functional genomic analysis of C. elegans chromosome I by systematic RNA interferenceQ29547812
Orthologs, paralogs, and evolutionary genomicsQ29615399
Automatic clustering of orthologs and in-paralogs from pairwise species comparisonsQ29615401
Specific interference by ingested dsRNAQ29617516
Distinguishing Homologous from Analogous ProteinsQ29617777
Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegansQ29618013
Benchmarking ortholog identification methods using functional genomics dataQ31036627
Wnt signal from multiple tissues and lin-3/EGF signal from the gonad maintain vulval precursor cell competence in Caenorhabditis elegansQ33310139
Phylogenetic and functional assessment of orthologs inference projects and methodsQ33400327
The protein kinases of Caenorhabditis elegans: a model for signal transduction in multicellular organismsQ33777991
Molecular evolution of a developmental pathway: phylogenetic analyses of transforming growth factor-beta family ligands, receptors and Smad signal transducersQ34607080
Adaptive evolution in two large families of ubiquitin-ligase adapters in nematodes and plantsQ34881890
Suppressors of the egg-laying defective phenotype of sel-12 presenilin mutants implicate the CoREST corepressor complex in LIN-12/Notch signaling in C. elegansQ35804704
Regulation of interneuron function in the C. elegans thermoregulatory pathway by the ttx-3 LIM homeobox geneQ36882039
Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotationsQ36915095
DauerQ36995488
Genomic classification of protein-coding gene familiesQ37006221
Wnt signalingQ37020455
LIN-12/Notch signaling in C. elegansQ37020460
TGF-beta signalingQ37020465
Genomic overview of protein kinasesQ37020469
Nuclear hormone receptors in C. elegansQ37020688
RTK/Ras/MAPK signalingQ37020699
Genome evolution in CaenorhabditisQ37198276
The long and the short of Wnt signaling in C. elegansQ37215643
The Axin-like protein PRY-1 is a negative regulator of a canonical Wnt pathway in C. elegans.Q39750448
Wnt signaling polarizes an early C. elegans blastomere to distinguish endoderm from mesodermQ39758271
Assessing performance of orthology detection strategies applied to eukaryotic genomesQ42025644
A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networksQ43251350
Otx/otd homeobox genes specify distinct sensory neuron identities in C. elegans.Q44612169
The lateral signal for LIN-12/Notch in C. elegans vulval development comprises redundant secreted and transmembrane DSL proteinsQ44762401
Systematic analysis of genes required for synapse structure and functionQ46622769
Genome-wide analysis identifies a general requirement for polarity proteins in endocytic trafficQ47068800
Roles of the Homothorax/Meis/Prep homolog UNC-62 and the Exd/Pbx homologs CEH-20 and CEH-40 in C. elegans embryogenesis.Q47069472
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue5
P407language of work or nameEnglishQ1860
P921main subjectCaenorhabditis elegansQ91703
P304page(s)e20085
P577publication date2011-05-25
P1433published inPLOS OneQ564954
P1476titleOrthoList: a compendium of C. elegans genes with human orthologs
P478volume6

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