| scholarly article | Q13442814 |
| P356 | DOI | 10.1038/NBT.3192 |
| P1325 | external data available at URL | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66688 |
| P8608 | Fatcat ID | release_ramvkauauzatbj2nhsckcysbwy |
| P932 | PMC publication ID | 4430369 |
| P698 | PubMed publication ID | 25867923 |
| P50 | author | Aviv Regev | Q4829027 |
| Rahul Satija | Q42799623 | ||
| Jeffrey A Farrell | Q59563904 | ||
| P2093 | author name string | Alexander F Schier | |
| David Gennert | |||
| P2860 | cites work | Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles | Q24536351 |
| Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq | Q24598443 | ||
| Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells | Q24630239 | ||
| Full transcriptome analysis of early dorsoventral patterning in zebrafish | Q27310622 | ||
| Stages of embryonic development of the zebrafish | Q27860947 | ||
| Origin and organization of the zebrafish fate map | Q28294898 | ||
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
| Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail and no tail mutant embryos | Q29616784 | ||
| The developmental transcriptome of Drosophila melanogaster | Q29617262 | ||
| Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells | Q29617430 | ||
| Reconstruction of the mouse otocyst and early neuroblast lineage at single-cell resolution | Q30580416 | ||
| Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments. | Q30583219 | ||
| Toddler: an embryonic signal that promotes cell movement via Apelin receptors | Q30584600 | ||
| A gene expression screen in zebrafish embryogenesis. | Q30772929 | ||
| Statistical significance of variables driving systematic variation in high-dimensional data | Q30863598 | ||
| High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin | Q30930642 | ||
| Bayesian approach to single-cell differential expression analysis | Q33955732 | ||
| Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq | Q34094294 | ||
| CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification | Q34297012 | ||
| ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics | Q34306580 | ||
| Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex | Q34315297 | ||
| Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue | Q34397195 | ||
| Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types | Q34404570 | ||
| Highly multiplexed subcellular RNA sequencing in situ | Q34407368 | ||
| Molecular genetics of axis formation in zebrafish | Q34562575 | ||
| Validation of noise models for single-cell transcriptomics | Q34661381 | ||
| Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression | Q34950683 | ||
| casanova encodes a novel Sox-related protein necessary and sufficient for early endoderm formation in zebrafish | Q35079257 | ||
| Single-cell RNA-seq reveals dynamic paracrine control of cellular variation | Q35185544 | ||
| Antagonistic role of vega1 and bozozok/dharma homeobox genes in organizer formation | Q35386741 | ||
| Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis | Q35791594 | ||
| Skin development in bony fish with particular emphasis on collagen deposition in the dermis of the zebrafish (Danio rerio). | Q35844869 | ||
| Breaking symmetry: the zebrafish as a model for understanding left-right asymmetry in the developing brain | Q38007170 | ||
| Gastrulation: making and shaping germ layers | Q38026928 | ||
| Nodal signaling activates differentiation genes during zebrafish gastrulation | Q38304615 | ||
| Zebrafish vasa homologue RNA is localized to the cleavage planes of 2- and 4-cell-stage embryos and is expressed in the primordial germ cells. | Q38556529 | ||
| The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells | Q41861103 | ||
| Accounting for technical noise in single-cell RNA-seq experiments. | Q42774165 | ||
| Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells | Q42774504 | ||
| Genome-wide RNA Tomography in the zebrafish embryo | Q44623633 | ||
| Spatial and temporal expression of the zebrafish genome by large-scale in situ hybridization screening. | Q45189517 | ||
| Three different noggin genes antagonize the activity of bone morphogenetic proteins in the zebrafish embryo. | Q47073671 | ||
| Lithium perturbation and goosecoid expression identify a dorsal specification pathway in the pregastrula zebrafish. | Q47074221 | ||
| Expression of two zebrafish homologues of the murine Six3 gene demarcates the initial eye primordia | Q48037954 | ||
| Genomics: Zebrafish earns its stripes. | Q51063563 | ||
| Commitment of cell fate in the early zebrafish embryo. | Q51141144 | ||
| Multiplex fluorescent in situ hybridization in zebrafish embryos using tyramide signal amplification | Q80627911 | ||
| P4510 | describes a project that uses | embryo | Q33196 |
| ImageJ | Q1659584 | ||
| P433 | issue | 5 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | RNA sequencing | Q2542347 |
| single cell transcriptomics | Q105406038 | ||
| gene expression data | Q105771078 | ||
| P1104 | number of pages | 8 | |
| P304 | page(s) | 495-502 | |
| P577 | publication date | 2015-04-13 | |
| P1433 | published in | Nature Biotechnology | Q1893837 |
| P1476 | title | Spatial reconstruction of single-cell gene expression data | |
| P478 | volume | 33 |
| Q97542310 | A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification |
| Q64064552 | A Bayesian mixture model for clustering droplet-based single-cell transcriptomic data from population studies |
| Q33658152 | A Gene Regulatory Network Balances Neural and Mesoderm Specification during Vertebrate Trunk Development |
| Q35864570 | A Generic and Cell-Type-Specific Wound Response Precedes Regeneration in Planarians |
| Q34547013 | A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells |
| Q59770872 | A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility |
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| Q36111014 | A Transcriptional Lineage of the Early C. elegans Embryo. |
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| Q93105238 | A computational framework for DNA sequencing microscopy |
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| Q47559173 | A general and flexible method for signal extraction from single-cell RNA-seq data. |
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| Q38976437 | A molecular census of arcuate hypothalamus and median eminence cell types |
| Q98176741 | A molecular map of murine lymph node blood vascular endothelium at single cell resolution |
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| Q91973632 | An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data |
| Q52665692 | An accurate and robust imputation method scImpute for single-cell RNA-seq data. |
| Q64096733 | An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics |
| Q30828826 | An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries |
| Q38692859 | An immunogenic personal neoantigen vaccine for patients with melanoma |
| Q98648903 | An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes |
| Q52664099 | An interpretable framework for clustering single-cell RNA-Seq datasets. |
| Q91595103 | An optimised tissue disaggregation and data processing pipeline for characterising fibroblast phenotypes using single-cell RNA sequencing |
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| Q60043958 | Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics |
| Q42615577 | Cell diversity and network dynamics in photosensitive human brain organoids. |
| Q36376696 | Cell fixation and preservation for droplet-based single-cell transcriptomics |
| Q92026867 | Cell lineage inference from SNP and scRNA-Seq data |
| Q52576606 | Cell type transcriptome atlas for the planarian Schmidtea mediterranea. |
| Q91750690 | Cell type-specific epigenetic links to schizophrenia risk in the brain |
| Q92642016 | Cell-to-Cell Variation in Defective Virus Expression and Effects on Host Responses during Influenza Virus Infection |
| Q89901100 | CellPhoneDB: inferring cell-cell communication from combined expression of multi-subunit ligand-receptor complexes |
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| Q98463529 | Cellular and molecular properties of neural progenitors in the developing mammalian hypothalamus |
| Q55154007 | Cellular diversity in the Drosophila midbrain revealed by single-cell transcriptomics. |
| Q57034602 | Cellular network modeling and single cell gene expression analysis reveals novel hepatic stellate cell phenotypes controlling liver regeneration dynamics |
| Q38439946 | Cerebral cortical neuron diversity and development at single-cell resolution |
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| Q89777596 | Changes in bone marrow innate lymphoid cell subsets in monoclonal gammopathy: target for IMiD therapy |
| Q93223361 | Characterization of human mosaic Rett syndrome brain tissue by single-nucleus RNA sequencing |
| Q59800374 | Characterization of spatial and temporal development of Type I and Type II hair cells in the mouse utricle using new cell-type-specific markers |
| Q89963774 | Characterizing Adult Cochlear Supporting Cell Transcriptional Diversity Using Single-Cell RNA-Seq: Validation in the Adult Mouse and Translational Implications for the Adult Human Cochlea |
| Q93017145 | Characterizing Human Cell Types and Tissue Origin Using the Benford Law |
| Q36635139 | Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis |
| Q91676982 | Childhood cerebellar tumours mirror conserved fetal transcriptional programs |
| Q93039099 | Chromatin mapping and single-cell immune profiling define the temporal dynamics of ibrutinib response in CLL |
| Q64938784 | Chronic Liver Disease in Humans Causes Expansion and Differentiation of Liver Lymphatic Endothelial Cells. |
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| Q89636415 | Clonal ZEB1-Driven Mesenchymal Transition Promotes Targetable Oncologic Antiangiogenic Therapy Resistance |
| Q47316954 | Clustering single cells: a review of approaches on high-and low-depth single-cell RNA-seq data. |
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| Q38676047 | De Novo Gene Expression Reconstruction in Space. |
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| Q91734007 | Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data |
| Q39043805 | Deep homology in the age of next-generation sequencing. |
| Q98652215 | Deep learning-based cell composition analysis from tissue expression profiles |
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| Q38747580 | Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland |
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| Q55261007 | Dirichlet Process Mixture Model for Correcting Technical Variation in Single-Cell Gene Expression Data. |
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| Q94552917 | Discovery of alternative polyadenylation dynamics from single cell types |
| Q64298561 | Dissecting Cellular Heterogeneity Using Single-Cell RNA Sequencing |
| Q92501687 | Dissecting cell diversity and connectivity in skeletal muscle for myogenesis |
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| Q91594396 | Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq |
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| Q49684035 | High efficient multisites genome editing in allotetraploid cotton (Gossypium hirsutum) using CRISPR/Cas9 system. |
| Q90290537 | High throughput gene expression profiling of yeast colonies with microgel-culture Drop-seq |
| Q58554555 | High-Dimensional Single-Cell Analysis Identifies Organ-Specific Signatures and Conserved NK Cell Subsets in Humans and Mice |
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| Q92040904 | High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types |
| Q92962893 | High-resolution analysis of germ cells from men with sex chromosomal aneuploidies reveals normal transcriptome but impaired imprinting |
| Q67471784 | High-resolution transcriptional dissection of in vivo Atoh1-mediated hair cell conversion in mature cochleae identifies Isl1 as a co-reprogramming factor. |
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| Q34044099 | Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets |
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| Q99418657 | Human Cell Atlas and cell-type authentication for regenerative medicine |
| Q37500375 | Human dendritic cells (DCs) are derived from distinct circulating precursors that are precommitted to become CD1c+ or CD141+ DCs. |
| Q90713241 | Human iPSC-derived mature microglia retain their identity and functionally integrate in the chimeric mouse brain |
| Q55453765 | Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway. |
| Q91896917 | Human lymphoid organ cDC2 and macrophages play complementary roles in T follicular helper responses |
| Q95841389 | Hybrid Stem Cell States: Insights Into the Relationship Between Mammary Development and Breast Cancer Using Single-Cell Transcriptomics |
| Q64054850 | Hydro-Seq enables contamination-free high-throughput single-cell RNA-sequencing for circulating tumor cells |
| Q94597199 | Hypothalamic estrogen receptor alpha establishes a sexually dimorphic regulatory node of energy expenditure |
| Q95660974 | IDO1+ Paneth cells promote immune escape of colorectal cancer |
| Q38699928 | IFNγ-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment |
| Q46257233 | IL-11 is a crucial determinant of cardiovascular fibrosis. |
| Q46039774 | IRF3 and type I interferons fuel a fatal response to myocardial infarction. |
| Q89991582 | IRF4 instructs effector Treg differentiation and immune suppression in human cancer |
| Q92755189 | Identification of a Master Regulator of Differentiation in Toxoplasma |
| Q64903298 | Identification of an Early Unipotent Neutrophil Progenitor with Pro-tumoral Activity in Mouse and Human Bone Marrow. |
| Q47405664 | Identification of genes expressed in a mesenchymal subset regulating prostate organogenesis using tissue and single cell transcriptomics |
| Q58084858 | Identification of grade and origin specific cell populations in serous epithelial ovarian cancer by single cell RNA-seq |
| Q90091126 | Identification of region-specific astrocyte subtypes at single cell resolution |
| Q58105648 | Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data |
| Q83231039 | Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq |
| Q90226764 | Imaging the Life and Death of mRNAs in Single Cells |
| Q89685938 | Immune cell landscaping reveals a protective role for regulatory T cells during kidney injury and fibrosis |
| Q89790825 | Immune checkpoint modulation enhances HIV-1 antibody induction |
| Q26770736 | Implications of Epigenetic Variability within a Cell Population for "Cell Type" Classification |
| Q42377271 | In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus |
| Q91330218 | In situ readout of DNA barcodes and single base edits facilitated by in vitro transcription |
| Q58786894 | In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells |
| Q92768267 | Inferring population dynamics from single-cell RNA-sequencing time series data |
| Q91757055 | Inferring reaction network structure from single-cell, multiplex data, using toric systems theory |
| Q94461656 | Inferring spatial and signaling relationships between cells from single cell transcriptomic data |
| Q90725950 | Inflammasome Priming Mediated via Toll-Like Receptors 2 and 4, Induces Th1-Like Regulatory T Cells in De Novo Autoimmune Hepatitis |
| Q89747608 | Inhibiting WNT and NOTCH in renal cancer stem cells and the implications for human patients |
| Q47242113 | Initiation of Antiviral B Cell Immunity Relies on Innate Signals from Spatially Positioned NKT Cells |
| Q64090324 | Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data |
| Q64101616 | Insights into the Biology of Hearing and Deafness Revealed by Single-Cell RNA Sequencing |
| Q27316950 | Integrated live imaging and molecular profiling of embryoid bodies reveals a synchronized progression of early differentiation |
| Q98513728 | Integrating genetic and non-genetic determinants of cancer evolution by single-cell multi-omics |
| Q92610756 | Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas |
| Q88243551 | Integrating single-cell transcriptomic data across different conditions, technologies, and species |
| Q91272514 | Integrative single-cell analysis |
| Q67596828 | Integrative single-cell analysis of transcriptome, DNA methylome and chromatin accessibility in mouse oocytes |
| Q93172373 | Is Low Alveolar Type II Cell SOD3 in the Lungs of Elderly Linked to the Observed Severity of COVID-19? |
| Q64120239 | Kidney micro-organoids in suspension culture as a scalable source of human pluripotent stem cell-derived kidney cells |
| Q57022205 | Kinetics of adult hematopoietic stem cell differentiation in vivo |
| Q89916726 | Lamina-Dependent Stretching and Unconventional Chromosome Compartments in Early C. elegans Embryos |
| Q58780459 | Large-Scale Human Dendritic Cell Differentiation Revealing Notch-Dependent Lineage Bifurcation and Heterogeneity |
| Q89480082 | Large-Scale Single-Cell RNA-Seq Reveals Molecular Signatures of Heterogeneous Populations of Human Induced Pluripotent Stem Cell-Derived Endothelial Cells |
| Q57798900 | Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR-Cas9 barcodes by scGESTALT |
| Q98735537 | Leveraging Public Single-Cell and Bulk Transcriptomic Datasets to Delineate MAIT Cell Roles and Phenotypic Characteristics in Human Malignancies |
| Q42777634 | Leveraging blood and tissue CD4+ T cell heterogeneity at the single cell level to identify mechanisms of disease in rheumatoid arthritis. |
| Q58698611 | Lineage dynamics of murine pancreatic development at single-cell resolution |
| Q90814608 | Lineage tracing meets single-cell omics: opportunities and challenges |
| Q59807526 | Linking single-cell measurements of mass, growth rate, and gene expression |
| Q42778015 | Linnorm: improved statistical analysis for single cell RNA-seq expression data |
| Q92026142 | Loss of ADAMTS19 causes progressive non-syndromic heart valve disease |
| Q66364596 | Loss of ADAR1 in tumours overcomes resistance to immune checkpoint blockade. |
| Q90083011 | Loss of DNA methyltransferase activity in primed human ES cells triggers increased cell-cell variability and transcriptional repression |
| Q96127505 | Loss of the transcription factor MAFB limits β-cell derivation from human PSCs |
| Q90404065 | Lrig1 expression prospectively identifies stem cells in the ventricular-subventricular zone that are neurogenic throughout adult life |
| Q94671513 | MAPS-seq: magnetic bead-assisted parallel single-cell gene expression profiling |
| Q100737318 | MARS: discovering novel cell types across heterogeneous single-cell experiments |
| Q92826809 | MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices |
| Q99707958 | Macrophages Maintain Epithelium Integrity by Limiting Fungal Product Absorption |
| Q58590004 | Maintenance of human haematopoietic stem and progenitor cells in vitro using a chemical cocktail |
| Q37702372 | Mapping heterogeneity in patient-derived melanoma cultures by single-cell RNA-seq |
| Q52604141 | Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. |
| Q98196886 | Mapping systemic lupus erythematosus heterogeneity at the single-cell level |
| Q40225787 | Mapping the human DC lineage through the integration of high-dimensional techniques. |
| Q88768159 | Mapping the physical network of cellular interactions |
| Q92378022 | Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion |
| Q34509343 | Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development |
| Q90660121 | MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions |
| Q97643695 | Meteorin-like facilitates skeletal muscle repair through a Stat3/IGF-1 mechanism |
| Q98471265 | Micro-environmental sensing by bone marrow stroma identifies IL-6 and TGFβ1 as regulators of hematopoietic ageing |
| Q30366102 | Microfluidic Sample Preparation for Single Cell Analysis. |
| Q49775402 | Microfluidic channel optimization to improve hydrodynamic dissociation of cell aggregates and tissue. |
| Q90064817 | Minnow: a principled framework for rapid simulation of dscRNA-seq data at the read level |
| Q47625325 | Missing data and technical variability in single-cell RNA-sequencing experiments |
| Q92709563 | Mitogenic and progenitor gene programmes in single pilocytic astrocytoma cells |
| Q64052031 | Model-based understanding of single-cell CRISPR screening |
| Q90438655 | Modeling Cell-Cell Interactions from Spatial Molecular Data with Spatial Variance Component Analysis |
| Q33365169 | Modeling and high-throughput experimental data uncover the mechanisms underlying Fshb gene sensitivity to gonadotropin-releasing hormone pulse frequency |
| Q104515534 | Modeling mammalian trunk development in a dish |
| Q37320970 | Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells |
| Q83229702 | Molecular and anatomical organization of the dorsal raphe nucleus |
| Q97425112 | Molecular atlas of the adult mouse brain |
| Q91972773 | Molecular determinants of nephron vascular specialization in the kidney |
| Q64077839 | Molecular profiling of resident and infiltrating mononuclear phagocytes during rapid adult retinal degeneration using single-cell RNA sequencing |
| Q60921242 | Molecular signatures of multiple myeloma progression through single cell RNA-Seq |
| Q52653283 | Molecular transitions in early progenitors during human cord blood hematopoiesis. |
| Q36459354 | Mouse embryonic fibroblasts exhibit extensive developmental and phenotypic diversity |
| Q90250510 | Multi-scale cellular engineering: From molecules to organ-on-a-chip |
| Q46094386 | Multiplexed droplet single-cell RNA-sequencing using natural genetic variation |
| Q46443403 | Multiplexed quantification of proteins and transcripts in single cells |
| Q64054994 | Multiplexed single-cell RNA-seq via transient barcoding for simultaneous expression profiling of various drug perturbations |
| Q64096583 | Multiplexed, Sequential Secretion Analysis of the Same Single Cells Reveals Distinct Effector Response Dynamics Dependent on the Initial Basal State |
| Q89548775 | Neonatal Rhesus Macaques Have Distinct Immune Cell Transcriptional Profiles following HIV Envelope Immunization |
| Q61810164 | Nephron progenitor commitment is a stochastic process influenced by cell migration |
| Q94550590 | Neural regulation of energy and bone homeostasis by the synaptic adhesion molecule Calsyntenin-3 |
| Q91637219 | New Neurons in the Post-ischemic and Injured Brain: Migrating or Resident? |
| Q64104496 | Noninvasive ultrasound stimulation of the spleen to treat inflammatory arthritis |
| Q89966214 | Normalization Methods on Single-Cell RNA-seq Data: An Empirical Survey |
| Q92212958 | Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression |
| Q92995447 | Novel computational model of gastrula morphogenesis to identify spatial discriminator genes by self-organizing map (SOM) clustering |
| Q94456293 | OTX2 represses sister cell fate choices in the developing retina to promote photoreceptor specification |
| Q67653684 | Obesity remodels activity and transcriptional state of a lateral hypothalamic brake on feeding |
| Q61811425 | Optofluidic real-time cell sorter for longitudinal CTC studies in mouse models of cancer |
| Q64119748 | Organoid Modeling of the Tumor Immune Microenvironment |
| Q64075919 | PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells |
| Q93217102 | PD-1 blockade-unresponsive human tumor-infiltrating CD8+ T cells are marked by loss of CD28 expression and rescued by IL-151 |
| Q57294401 | PHLI-seq: constructing and visualizing cancer genomic maps in 3D by phenotype-based high-throughput laser-aided isolation and sequencing |
| Q47204760 | PIVOT: platform for interactive analysis and visualization of transcriptomics data. |
| Q90135121 | PTPN2 regulates the generation of exhausted CD8+ T cell subpopulations and restrains tumor immunity |
| Q57899616 | Paired-cell sequencing enables spatial gene expression mapping of liver endothelial cells |
| Q92405554 | Pan-Cancer and Single-Cell Modeling of Genomic Alterations Through Gene Expression |
| Q59096618 | Parasitic helminths induce fetal-like reversion in the intestinal stem cell niche |
| Q88573685 | Peripheral PDGFRα+gp38+ mesenchymal cells support the differentiation of fetal liver-derived ILC2 |
| Q90361677 | Perspectives on defining cell types in the brain |
| Q89128831 | Phenotypic Convergence: Distinct Transcription Factors Regulate Common Terminal Features |
| Q92726609 | Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions |
| Q99407076 | Pinpointing Cell Identity in Time and Space |
| Q48240151 | Pixelated spatial gene expression analysis from tissue. |
| Q50450863 | Planarian Epidermal Stem Cells Respond to Positional Cues to Promote Cell-Type Diversity. |
| Q90628459 | Platform Effects on Regeneration by Pulmonary Basal Cells as Evaluated by Single-Cell RNA Sequencing |
| Q95262934 | Potent neutralizing antibodies against SARS-CoV-2 identified by high-throughput single-cell sequencing of convalescent patients' B cells |
| Q47559183 | Precision Medicine for Acute Kidney Injury (AKI): Redefining AKI by Agnostic Kidney Tissue Interrogation and Genetics |
| Q47551145 | Precursors of human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis |
| Q100464161 | Predicting cell-to-cell communication networks using NATMI |
| Q57798905 | Preparation of plant tissue to enable Spatial Transcriptomics profiling using barcoded microarrays |
| Q92365687 | Prevention of tuberculosis in macaques after intravenous BCG immunization |
| Q55401918 | Prioritizing network communities. |
| Q31024831 | Processing, visualising and reconstructing network models from single-cell data. |
| Q93087430 | Profiling chromatin states using single-cell itChIP-seq |
| Q90591913 | Profiling gene expression in the human dentate gyrus granule cell layer reveals insights into schizophrenia and its genetic risk |
| Q47260511 | Programming Morphogenesis through Systems and Synthetic Biology. |
| Q56794295 | Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis |
| Q93129164 | Proteomics and single-cell RNA analysis of Akap4-knockout mice model confirm indispensable role of Akap4 in spermatogenesis |
| Q101040873 | Protocol for Identification and Removal of Doublets with DoubletDecon |
| Q90629133 | PscB: A Browser to Explore Plant Single Cell RNA-Sequencing Datasets |
| Q97566473 | PsychENCODE and beyond: transcriptomics and epigenomics of brain development and organoids |
| Q48188204 | Putting cells in their place |
| Q64232878 | PyMINEr Finds Gene and Autocrine-Paracrine Networks from Human Islet scRNA-Seq |
| Q36230239 | Quantitative approaches for investigating the spatial context of gene expression. |
| Q45027045 | Quantitatively predictable control of Drosophila transcriptional enhancers in vivo with engineered transcription factors |
| Q57025317 | RAB11FIP5 Expression and Altered Natural Killer Cell Function Are Associated with Induction of HIV Broadly Neutralizing Antibody Responses |
| Q47853163 | RNA Polymerase Tags To Monitor Multidimensional Protein-Protein Interactions Reveal Pharmacological Engagement of Bcl-2 Proteins. |
| Q90250252 | RNA profile diversity across arthropoda: guidelines, methodological artifacts, and expected outcomes |
| Q87256678 | RNA: Putting transcriptomics in its place |
| Q100474460 | RUNX1 marks a luminal castration resistant lineage established at the onset of prostate development |
| Q92567737 | Reactive microglia and IL1β/IL-1R1-signaling mediate neuroprotection in excitotoxin-damaged mouse retina |
| Q98881675 | Reading the heart at single-cell resolution |
| Q39105559 | Recent progress in single-cell cancer genomics |
| Q99630278 | Reciprocal change in Glucose metabolism of Cancer and Immune Cells mediated by different Glucose Transporters predicts Immunotherapy response |
| Q38566716 | Reconstructing and analysing cellular states, space and time from gene expression profiles of many cells and single cells |
| Q33812762 | Reconstructing cell cycle pseudo time-series via single-cell transcriptome data |
| Q96431585 | Reconstruction of cell spatial organization from single-cell RNA sequencing data based on ligand-receptor mediated self-assembly |
| Q93086985 | Recording development with single cell dynamic lineage tracing |
| Q92825323 | Recurrent pregnancy loss is associated with a pro-senescent decidual response during the peri-implantation window |
| Q38893868 | Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors |
| Q57074351 | Regulatory network characterization in development: challenges and opportunities |
| Q42416456 | Resolving early mesoderm diversification through single-cell expression profiling |
| Q90612750 | Resolving the fibrotic niche of human liver cirrhosis at single-cell level |
| Q35400961 | Response to Nodal morphogen gradient is determined by the kinetics of target gene induction |
| Q91330166 | Revealing dynamics of gene expression variability in cell state space |
| Q39002947 | Revealing the vectors of cellular identity with single-cell genomics |
| Q94513293 | Rho/SMAD/mTOR triple inhibition enables long-term expansion of human neonatal tracheal aspirate-derived airway basal cell-like cells |
| Q90280806 | Role of nutrient-driven O-GlcNAc-posttranslational modification in pancreatic exocrine and endocrine islet development |
| Q30773560 | Root Regeneration Triggers an Embryo-like Sequence Guided by Hormonal Interactions |
| Q57567662 | SAFE-clustering: Single-cell Aggregated (from Ensemble) clustering for single-cell RNA-seq data |
| Q94938805 | SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues |
| Q110644614 | SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids |
| Q64940282 | SAVER: gene expression recovery for single-cell RNA sequencing. |
| Q48096231 | SCANPY: large-scale single-cell gene expression data analysis. |
| Q42778321 | SFRP2/DPP4 and FMO1/LSP1 define major fibroblast populations in human skin |
| Q35850720 | SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis |
| Q92765938 | SSCC: A Novel Computational Framework for Rapid and Accurate Clustering Large-scale Single Cell RNA-seq Data |
| Q55514224 | Scalable preprocessing for sparse scRNA-seq data exploiting prior knowledge. |
| Q38732766 | Scaling by shrinking: empowering single-cell 'omics' with microfluidic devices |
| Q39094767 | Scaling single-cell genomics from phenomenology to mechanism |
| Q90390291 | Sel1L-Hrd1 ER-associated degradation maintains β-cell identity via TGFβ signaling |
| Q59349658 | Selective expansion of myeloid and NK cells in humanized mice yields human-like vaccine responses |
| Q83227911 | Self-assembling manifolds in single-cell RNA sequencing data |
| Q60934185 | Semisoft clustering of single-cell data |
| Q92826757 | Sensory lesioning induces microglial synapse elimination via ADAM10 and fractalkine signaling |
| Q34551107 | Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput |
| Q90776750 | Sestrins induce natural killer function in senescent-like CD8+ T cells |
| Q61447363 | Setd5 haploinsufficiency alters neuronal network connectivity and leads to autistic-like behaviors in mice |
| Q108863326 | ShinyArchR.UiO: User-friendly, integrative and open-source tool for visualisation of single-cell ATAC-seq data using ArchR |
| Q52558706 | SigEMD: A powerful method for differential gene expression analysis in single-cell RNA sequencing data. |
| Q92659002 | Signatures of medical student applicants and academic success |
| Q52431495 | Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars. |
| Q42142319 | Simultaneous mapping of active DNA demethylation and sister chromatid exchange in single cells. |
| Q90596807 | Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells |
| Q52431227 | Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain. |
| Q90328769 | Single Cell RNA Sequencing of Rare Immune Cell Populations |
| Q46546508 | Single Cell Resolution of Human Hematoendothelial Cells Defines Transcriptional Signatures of Hemogenic Endothelium. |
| Q92535164 | Single Cell and Single Nucleus RNA-Seq Reveal Cellular Heterogeneity and Homeostatic Regulatory Networks in Adult Mouse Stria Vascularis |
| Q60921870 | Single cell RNA analysis identifies cellular heterogeneity and adaptive responses of the lung at birth |
| Q58129953 | Single cell RNA-seq data clustering using TF-IDF based methods |
| Q59326833 | Single cell RNA-sequencing identifies a metabolic aspect of apoptosis in Rbf mutant |
| Q92668670 | Single cell transcriptome analysis of developing arcuate nucleus neurons uncovers their key developmental regulators |
| Q83226138 | Single cell transcriptome atlas of the larval brain |
| Q92720716 | Single-Cell Analysis Reveals Regional Reprogramming During Adaptation to Massive Small Bowel Resection in Mice |
| Q34673769 | Single-Cell Analysis in Cancer Genomics |
| Q91710181 | Single-Cell Analysis of Neuroinflammatory Responses Following Intracranial Injection of G-Deleted Rabies Viruses |
| Q57044843 | Single-Cell Analysis of Quiescent HIV Infection Reveals Host Transcriptional Profiles that Regulate Proviral Latency |
| Q61800595 | Single-Cell Analysis of Regional Differences in Adult V-SVZ Neural Stem Cell Lineages |
| Q90612421 | Single-Cell Chromatin Analysis of Mammary Gland Development Reveals Cell-State Transcriptional Regulators and Lineage Relationships |
| Q64102693 | Single-Cell Gene Expression Analysis Identifies Chronic Alcohol-Mediated Shift in Hepatocyte Molecular States After Partial Hepatectomy |
| Q101040836 | Single-Cell Isolation from Regenerating Murine Muscles for RNA-Sequencing Analysis |
| Q90212494 | Single-Cell Lymphocyte Heterogeneity in Advanced Cutaneous T-cell Lymphoma Skin Tumors |
| Q90213640 | Single-Cell Multi-omics: An Engine for New Quantitative Models of Gene Regulation |
| Q101410980 | Single-Cell Profiling of Ebola Virus Disease In Vivo Reveals Viral and Host Dynamics |
| Q64093207 | Single-Cell RNA Sequencing of Human Embryonic Stem Cell Differentiation Delineates Adverse Effects of Nicotine on Embryonic Development |
| Q36175926 | Single-Cell RNA Sequencing of Human T Cells |
| Q88644728 | Single-Cell RNA Sequencing of Lymph Node Stromal Cells Reveals Niche-Associated Heterogeneity |
| Q61248543 | Single-Cell RNA Sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes |
| Q92512529 | Single-Cell RNA Sequencing of Visceral Adipose Tissue Leukocytes Reveals that Caloric Restriction Following Obesity Promotes the Accumulation of a Distinct Macrophage Population with Features of Phagocytic Cells |
| Q39304295 | Single-Cell RNA Sequencing: Unraveling the Brain One Cell at a Time. |
| Q92661110 | Single-Cell RNA Transcriptome Helps Define the Limbal/Corneal Epithelial Stem/Early Transit Amplifying Cells and How Autophagy Affects This Population |
| Q96304802 | Single-Cell RNA-Seq Analysis Uncovers Distinct Functional Human NKT Cell Sub-Populations in Peripheral Blood |
| Q64071552 | Single-Cell RNA-Seq Technologies and Related Computational Data Analysis |
| Q91770439 | Single-Cell RNA-Seq Uncovers a Robust Transcriptional Response to Morphine by Glia |
| Q64107545 | Single-Cell RNA-Sequencing-Based CRISPRi Screening Resolves Molecular Drivers of Early Human Endoderm Development |
| Q93010772 | Single-Cell RNA-seq: Introduction to Bioinformatics Analysis |
| Q52728643 | Single-Cell Transcriptome Analysis Using SINCERA Pipeline. |
| Q55109486 | Single-Cell Transcriptome Analysis of Neural Stem Cells. |
| Q94502818 | Single-Cell Transcriptome Data Clustering via Multinomial Modeling and Adaptive Fuzzy K-Means Algorithm |
| Q94464438 | Single-Cell Transcriptomes Reveal a Complex Cellular Landscape in the Middle Ear and Differential Capacities for Acute Response to Infection |
| Q90260641 | Single-Cell Transcriptomic Analysis |
| Q28073365 | Single-Cell Transcriptomics Bioinformatics and Computational Challenges |
| Q64262168 | Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation |
| Q39377159 | Single-Cell mRNA Sequencing in Cancer Research: Integrating the Genomic Fingerprint |
| Q88778915 | Single-cell RNA sequencing for the study of development, physiology and disease |
| Q91622177 | Single-cell RNA sequencing of a European and an African lymphoblastoid cell line |
| Q92380821 | Single-cell RNA sequencing of human kidney |
| Q57805346 | Single-cell RNA sequencing of the mammalian pineal gland identifies two pinealocyte subtypes and cell type-specific daily patterns of gene expression |
| Q44169496 | Single-cell RNA sequencing reveals a signature of sexual commitment in malaria parasites. |
| Q59134956 | Single-cell RNA sequencing reveals microglia-like cells in cerebrospinal fluid during virologically suppressed HIV |
| Q38645486 | Single-cell RNA sequencing to explore immune cell heterogeneity |
| Q59806190 | Single-cell RNA sequencing unveils an IL-10-producing helper subset that sustains humoral immunity during persistent infection |
| Q38798570 | Single-cell RNA sequencing: revealing human pre-implantation development, pluripotency and germline development. |
| Q91976214 | Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in human primary prostate cells in monolayer and organoid culture conditions |
| Q61041657 | Single-cell RNA-seq analysis identifies markers of resistance to targeted BRAF inhibitors in melanoma cell populations |
| Q52655649 | Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis. |
| Q89962586 | Single-cell RNA-seq clustering: datasets, models, and algorithms |
| Q91622915 | Single-cell RNA-seq highlights intra-tumoral heterogeneity and malignant progression in pancreatic ductal adenocarcinoma |
| Q99564885 | Single-cell RNA-seq identifies unique transcriptional landscapes of human nucleus pulposus and annulus fibrosus cells |
| Q104064641 | Single-cell RNA-seq reveals CD16- monocytes as key regulators of human monocyte transcriptional response to Toxoplasma |
| Q40736991 | Single-cell RNA-seq reveals cell type-specific transcriptional signatures at the maternal-foetal interface during pregnancy |
| Q99708214 | Single-cell RNA-seq reveals different subsets of non-specific cytotoxic cells in teleost |
| Q91618808 | Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation |
| Q101051346 | Single-cell RNA-seq reveals novel mitochondria-related musculoskeletal cell populations during adult axolotl limb regeneration process |
| Q99565942 | Single-cell RNA-seq reveals the immune escape and drug resistance mechanisms of mantle cell lymphoma |
| Q42774833 | Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma |
| Q57162910 | Single-cell RNA-seq uncovers dynamic processes and critical regulators in mouse spermatogenesis |
| Q89558952 | Single-cell analyses uncover granularity of muscle stem cells |
| Q47920936 | Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex. |
| Q37510607 | Single-cell analysis of mixed-lineage states leading to a binary cell fate choice. |
| Q91595293 | Single-cell analysis reveals T cell infiltration in old neurogenic niches |
| Q61444986 | Single-cell analysis reveals congruence between kidney organoids and human fetal kidney |
| Q61797532 | Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds |
| Q60341043 | Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration |
| Q98196917 | Single-cell atlas of colonic CD8+ T cells in ulcerative colitis |
| Q92453985 | Single-cell biology: beyond the sum of its parts |
| Q34045945 | Single-cell genome sequencing: current state of the science |
| Q38895607 | Single-cell genome-wide studies give new insight into nongenetic cell-to-cell variability in animals |
| Q57464673 | Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells |
| Q107272437 | Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes |
| Q95610933 | Single-cell longitudinal analysis of SARS-CoV-2 infection in human bronchial epithelial cells |
| Q90288393 | Single-cell mapping of lineage and identity in direct reprogramming |
| Q92832347 | Single-cell profiling guided combinatorial immunotherapy for fast-evolving CDK4/6 inhibitor-resistant HER2-positive breast cancer |
| Q47141786 | Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment. |
| Q102388935 | Single-cell profiling reveals the trajectories of natural killer cell differentiation in bone marrow and a stress signature induced by acute myeloid leukemia |
| Q60468467 | Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis |
| Q92503831 | Single-cell reconstruction of the adult human heart during heart failure and recovery reveals the cellular landscape underlying cardiac function |
| Q59068540 | Single-cell reconstruction of the early maternal–fetal interface in humans |
| Q26753145 | Single-cell sequencing in stem cell biology |
| Q99418646 | Single-cell sequencing techniques from individual to multiomics analyses |
| Q42320342 | Single-cell spatial reconstruction reveals global division of labour in the mammalian liver |
| Q38811334 | Single-cell topological RNA-seq analysis reveals insights into cellular differentiation and development |
| Q36949940 | Single-cell transcriptional analysis of normal, aberrant, and malignant hematopoiesis in zebrafish |
| Q52582005 | Single-cell transcriptional profiling: a window into embryonic cell-type specification. |
| Q64095742 | Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model |
| Q94497577 | Single-cell transcriptome analysis of the novel coronavirus (SARS-CoV-2) associated gene ACE2 expression in normal and non-obstructive azoospermia (NOA) human male testes |
| Q58600576 | Single-cell transcriptome profiling of the Ciona larval brain |
| Q26767451 | Single-cell transcriptome sequencing: recent advances and remaining challenges |
| Q92435546 | Single-cell transcriptomes of murine bone marrow stromal cells reveal niche-associated heterogeneity |
| Q93196157 | Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming |
| Q96131540 | Single-cell transcriptomic analysis identifies the conversion of zebrafish Etv2-deficient vascular progenitors into skeletal muscle |
| Q64070849 | Single-cell transcriptomic landscape of nucleated cells in umbilical cord blood |
| Q90263029 | Single-cell transcriptomic profiling of the aging mouse brain |
| Q98513890 | Single-cell transcriptomics identifies a distinct luminal progenitor cell type in distal prostate invagination tips |
| Q89957153 | Single-cell transcriptomics of blood reveals a natural killer cell subset depletion in tuberculosis |
| Q47855556 | Single-cell transcriptomics of the developing lateral geniculate nucleus reveals insights into circuit assembly and refinement. |
| Q38703730 | Site-specific gene expression analysis using an automated tissue micro-dissection punching system. |
| Q91595285 | Somatic mutations and cell identity linked by Genotyping of Transcriptomes |
| Q99588263 | SpaGE: Spatial Gene Enhancement using scRNA-seq |
| Q92767348 | Spatial heterogeneity in the mammalian liver |
| Q55289611 | Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity. |
| Q52313968 | Spatial patterns of gene expression are unveiled in the chick primitive streak by ordering single-cell transcriptomes. |
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