Tissue-specific direct targets of Caenorhabditis elegans Rb/E2F dictate distinct somatic and germline programs

scientific article published on 23 January 2013

Tissue-specific direct targets of Caenorhabditis elegans Rb/E2F dictate distinct somatic and germline programs is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1048207770
P356DOI10.1186/GB-2013-14-1-R5
P932PMC publication ID4053757
P698PubMed publication ID23347407
P5875ResearchGate publication ID235369856

P50authorMichael P. SnyderQ28924918
Mark Bender GersteinQ6766711
Valerie ReinkeQ57338308
P2093author name stringZhi Lu
Wei Niu
Guilin Wang
Michelle Kudron
P2860cites workHallmarks of Cancer: The Next GenerationQ22252312
The genetics of Caenorhabditis elegansQ24533408
Insights from genomic profiling of transcription factorsQ24611607
Repression of germline RNAi pathways in somatic cells by retinoblastoma pathway chromatin complexesQ27334718
Chromosome-biased binding and gene regulation by the Caenorhabditis elegans DRM complexQ27340320
Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental responseQ27348311
The embryonic cell lineage of the nematode Caenorhabditis elegansQ28271877
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE projectQ28301622
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controlsQ28305773
Functional genomic analysis of C. elegans chromosome I by systematic RNA interferenceQ29547812
Creation of low-copy integrated transgenic lines in Caenorhabditis elegansQ29618458
X-chromosome silencing in the germline of C. elegansQ30412367
DPL-1 (DP) acts in the germ line to coordinate ovulation and fertilization in C. elegansQ30487564
The E2F transcriptional network: old acquaintances with new facesQ30987531
Expression profiling of MAP kinase-mediated meiotic progression in Caenorhabditis elegansQ33263257
The lin-35/Rb and RNAi pathways cooperate to regulate a key cell cycle transition in C. elegansQ33283088
Efficient yeast ChIP-Seq using multiplex short-read DNA sequencingQ33401685
Regulation of heterochromatin assembly on unpaired chromosomes during Caenorhabditis elegans meiosis by components of a small RNA-mediated pathwayQ33497905
The histone H3K36 methyltransferase MES-4 acts epigenetically to transmit the memory of germline gene expression to progeny.Q33686906
synMuv B proteins antagonize germline fate in the intestine and ensure C. elegans survivalQ34592502
Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegansQ34625961
Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysisQ34947016
Emerging roles of E2Fs in cancer: an exit from cell cycle controlQ35009182
The SynMuv genes of Caenorhabditis elegans in vulval development and beyondQ35955994
A comprehensive ChIP-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family membersQ36098261
A network of genes antagonistic to the LIN-35 retinoblastoma protein of Caenorhabditis elegansQ36154459
The candidate MAP kinase phosphorylation substrate DPL-1 (DP) promotes expression of the MAP kinase phosphatase LIP-1 in C. elegans germ cellsQ36607166
RNA interference and retinoblastoma-related genes are required for repression of endogenous siRNA targets in Caenorhabditis elegansQ37068606
Transcriptome profiling of the C. elegans Rb ortholog reveals diverse developmental rolesQ37188176
RB gene family: genome-wide ChIP approaches could open undiscovered roads.Q37669300
Promotion of oogenesis and embryogenesis in the C. elegans gonad by EFL-1/DPL-1 (E2F) does not require LIN-35 (pRB).Q38311347
Retinoblastoma/p107/p130 pocket proteins: protein dynamics and interactions with target gene promotersQ39874231
Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germlineQ42219455
The Argonaute CSR-1 and its 22G-RNA cofactors are required for holocentric chromosome segregationQ42590501
A global profile of germline gene expression in C. elegansQ43535217
dpl-1 DP and efl-1 E2F act with lin-35 Rb to antagonize Ras signaling in C. elegans vulval developmentQ43681650
GLD-1, a cytoplasmic protein essential for oocyte differentiation, shows stage- and sex-specific expression during Caenorhabditis elegans germline developmentQ47069547
Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegansQ47327774
The C. elegans E2F- and DP-related proteins are required for embryonic asymmetry and negatively regulate Ras/MAPK signalingQ48882466
Somatic misexpression of germline P granules and enhanced RNA interference in retinoblastoma pathway mutants.Q52043143
The life cycle of the nematode Caenorhabditis elegansQ56522079
C. elegans orthologs of components of the RB tumor suppressor complex have distinct pro-apoptotic functionsQ81324597
SynMuv genes redundantly inhibit lin-3/EGF expression to prevent inappropriate vulval induction in C. elegansQ83296442
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectCaenorhabditis elegansQ91703
P304page(s)R5
P577publication date2013-01-23
P1433published inGenome BiologyQ5533480
P1476titleTissue-specific direct targets of Caenorhabditis elegans Rb/E2F dictate distinct somatic and germline programs
P478volume14

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cites work (P2860)
Q30848469A Systematic RNAi Screen Reveals a Novel Role of a Spindle Assembly Checkpoint Protein BuGZ in Synaptic Transmission in C. elegans
Q34213485A new dataset of spermatogenic vs. oogenic transcriptomes in the nematode Caenorhabditis elegans
Q63874606A universal transcriptomic signature of age reveals the temporal scaling of Caenorhabditis elegans aging trajectories.
Q34111752Absence of a simple code: how transcription factors read the genome
Q42789588Cancer metabolism: feeding a worm to starve a tumor
Q47965098Cell cycle transcription control: DREAM/MuvB and RB-E2F complexes
Q34336650Competence for chemical reprogramming of sexual fate correlates with an intersexual molecular signature in Caenorhabditis elegans
Q38619221Comprehensive single-cell transcriptional profiling of a multicellular organism.
Q42141064Defining a new vision for the retinoblastoma gene: report from the 3rd International Rb Meeting
Q41735227Defining heterochromatin in C. elegans through genome-wide analysis of the heterochromatin protein 1 homolog HPL-2.
Q49545754Dynein-pulling forces counteract lamin-mediated nuclear stability during nuclear envelope repair.
Q37343806E2F coregulates an essential HSF developmental program that is distinct from the heat-shock response
Q36429798Genomic Analyses of Sperm Fate Regulator Targets Reveal a Common Set of Oogenic mRNAs in Caenorhabditis elegans
Q37412756Implicating SCF complexes in organogenesis in Caenorhabditis elegans
Q64993308Isolated C. elegans germ nuclei exhibit distinct genomic profiles of histone modification and gene expression.
Q90089208Loss of an H3K9me anchor rescues laminopathy-linked changes in nuclear organization and muscle function in an Emery-Dreifuss muscular dystrophy model
Q46349883Loss of the Caenorhabditis elegans pocket protein LIN-35 reveals MuvB's innate function as the repressor of DREAM target genes
Q37424685Multiple small RNA pathways regulate the silencing of repeated and foreign genes in C. elegans
Q36112842Noncommutative Biology: Sequential Regulation of Complex Networks
Q37524492Novel functions for the transcription factor E2F4 in development and disease
Q37460687Opposing activities of DRM and MES-4 tune gene expression and X-chromosome repression in Caenorhabditis elegans germ cells
Q34194385Pluripotent cells will not dosage compensate
Q42984279The C. elegans SNAPc component SNPC-4 coats piRNA domains and is globally required for piRNA abundance
Q37725340The Caenorhabditis elegans HP1 family protein HPL-2 maintains ER homeostasis through the UPR and hormesis
Q88670499The Caenorhabditis elegans Ortholog of TDP-43 Regulates the Chromatin Localization of the Heterochromatin Protein 1 Homolog HPL-2
Q34465541The DREAM complex promotes gene body H2A.Z for target repression
Q36648746The E2F-DP1 Transcription Factor Complex Regulates Centriole Duplication in Caenorhabditis elegans.
Q47237663The modERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors
Q28082523Transcriptional control of stem cell fate by E2Fs and pocket proteins
Q37681231Transgenerational epigenetics in the germline cycle of Caenorhabditis elegans
Q92022778Wnt Signaling Drives Ectopic Gene Expression and Larval Arrest in the Absence of the Caenorhabditis elegans DREAM Repressor Complex
Q34044346dREAM co-operates with insulator-binding proteins and regulates expression at divergently paired genes

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