Regulation of nucleosome dynamics by histone modifications

scientific article

Regulation of nucleosome dynamics by histone modifications is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1016267319
P356DOI10.1038/NSMB.2470
P3181OpenCitations bibliographic resource ID1154847
P698PubMed publication ID23463310
P5875ResearchGate publication ID235797353

P50authorSteven HenikoffQ28033746
P2093author name stringGabriel E Zentner
P2860cites workPhosphorylation of histone H3(T118) alters nucleosome dynamics and remodelingQ42230215
Histone H3 lysine 36 methylation targets the Isw1b remodeling complex to chromatinQ42233474
Activator-induced spread of poly(ADP-ribose) polymerase promotes nucleosome loss at Hsp70.Q42422374
Dynamic changes in histone acetylation regulate origins of DNA replicationQ42700642
The presence of acetyl groups of histonesQ42957936
Partitioning of histone H3-H4 tetramers during DNA replication-dependent chromatin assemblyQ43111741
H2B ubiquitylation plays a role in nucleosome dynamics during transcription elongationQ46493188
Histone modification: cause or cog?Q52613857
Assembly and functions of heterochromatin in the fission yeast genome.Q53253347
Dynamics of Replication-Independent Histone Turnover in Budding YeastQ57233862
Phosphorylation of sea urchin sperm H1 and H2B histones precedes chromatin decondensation and H1 exchange during pronuclear formationQ70059698
Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replicationQ79749499
Expansion of the lysine acylation landscapeQ83533068
Functional mammalian homologues of the Drosophila PEV-modifier Su(var)3-9 encode centromere-associated proteins which complex with the heterochromatin component M31Q22009388
Role of histone H2A ubiquitination in Polycomb silencingQ24305090
Histone sumoylation is a negative regulator in Saccharomyces cerevisiae and shows dynamic interplay with positive-acting histone modificationsQ24545952
ACETYLATION AND METHYLATION OF HISTONES AND THEIR POSSIBLE ROLE IN THE REGULATION OF RNA SYNTHESISQ24629431
Genome-wide maps of chromatin state in pluripotent and lineage-committed cellsQ24632506
Integrative epigenomic mapping defines four main chromatin states in ArabidopsisQ24632836
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modificationQ24635918
Histone H2A monoubiquitination represses transcription by inhibiting RNA polymerase II transcriptional elongationQ24642681
Combinatorial patterns of histone acetylations and methylations in the human genomeQ24647290
Histone sumoylation is associated with transcriptional repressionQ24656259
Nuclear ADP-ribosylation reactions in mammalian cells: where are we today and where are we going?Q24669960
The SET-domain protein superfamily: protein lysine methyltransferasesQ24811144
Single-nucleosome mapping of histone modifications in S. cerevisiaeQ24816848
A peek into the complex realm of histone phosphorylationQ26992357
Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomainsQ27641772
Histone methylation by PRC2 is inhibited by active chromatin marksQ27667743
Combinatorial readout of histone H3 modifications specifies localization of ATRX to heterochromatinQ27670415
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domainQ27860477
Chromatin modifications and their functionQ27861067
Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genesQ27929868
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcriptionQ27932406
Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchangeQ27932433
Codependency of H2B monoubiquitination and nucleosome reassembly on Chd1.Q27934650
Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complexQ27935315
Genome-wide function of H2B ubiquitylation in promoter and genic regionsQ39196606
Direct interaction between SET8 and proliferating cell nuclear antigen couples H4-K20 methylation with DNA replicationQ39262414
A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI.Q39530698
Reciprocal intronic and exonic histone modification regions in humans.Q39634800
Polycomb group protein displacement and gene activation through MSK-dependent H3K27me3S28 phosphorylationQ39652259
Histone H3 serine 10 phosphorylation by Aurora B causes HP1 dissociation from heterochromatinQ40362512
Acetylation by Tip60 is required for selective histone variant exchange at DNA lesionsQ40495236
Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferaseQ40504274
The specificity and topology of chromatin interaction pathways in yeastQ40792982
Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcriptionQ41889467
Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS.Q27939071
DNA replication in eukaryotic cellsQ28131747
A critical role for histone H2AX in recruitment of repair factors to nuclear foci after DNA damageQ28144576
brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2Q28181639
Bromodomain: an acetyl-lysine binding domainQ28209708
GlcNAcylation of histone H2B facilitates its monoubiquitinationQ28254074
Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genesQ28255974
Histone variants--ancient wrap artists of the epigenomeQ28274796
Distinct factors control histone variant H3.3 localization at specific genomic regionsQ28275277
Polycomb silencing mechanisms and the management of genomic programmesQ28279277
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE projectQ28301622
Role for Dpy-30 in ES cell-fate specification by regulation of H3K4 methylation within bivalent domainsQ28591813
Redundant roles for histone H3 N-terminal lysine residues in subtelomeric gene repression in Saccharomyces cerevisiaeQ28768691
How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickersQ29547350
Mapping and analysis of chromatin state dynamics in nine human cell typesQ29547552
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expressionQ29614326
A unique chromatin signature uncovers early developmental enhancers in humansQ29614327
Histone H4-K16 acetylation controls chromatin structure and protein interactionsQ29614521
Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylationQ29614524
New nomenclature for chromatin-modifying enzymesQ29616425
Protein arginine methylation in mammals: who, what, and whyQ29617309
Identification of functional elements and regulatory circuits by Drosophila modENCODEQ29617551
Gene silencing: trans-histone regulatory pathway in chromatinQ30309681
A unified phylogeny-based nomenclature for histone variantsQ30426389
Menin and RNF20 recruitment is associated with dynamic histone modifications that regulate signal transducer and activator of transcription 1 (STAT1)-activated transcription of the interferon regulatory factor 1 gene (IRF1).Q30434776
Histone H4 and the maintenance of genome integrityQ30464369
Histone H3.3 is enriched in covalent modifications associated with active chromatinQ33196967
DSIF and RNA polymerase II CTD phosphorylation coordinate the recruitment of Rpd3S to actively transcribed genesQ33742112
Modulation of ISWI function by site-specific histone acetylationQ33757651
Chromatin higher-order structure and dynamicsQ33800327
Recent highlights of RNA-polymerase-II-mediated transcriptionQ33844508
Genomic characterization reveals a simple histone H4 acetylation code.Q33935027
TrxG and PcG proteins but not methylated histones remain associated with DNA through replicationQ34033300
In vivo effects of histone H3 depletion on nucleosome occupancy and position in Saccharomyces cerevisiaeQ34318265
Beta-N-acetylglucosamine (O-GlcNAc) is part of the histone codeQ34359019
Regulated nucleosome mobility and the histone code.Q34364723
ATP-dependent chromatin remodeling: genetics, genomics and mechanismsQ34627244
Dynamics of histone acetylation in vivo. A function for acetylation turnover?Q34746928
The histone modifications governing TFF1 transcription mediated by estrogen receptorQ34799913
Histone H2B ubiquitylation disrupts local and higher-order chromatin compactionQ34808188
Comprehensive analysis of the chromatin landscape in Drosophila melanogasterQ35030499
Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functionsQ35145499
Modification of histones by sugar β-N-acetylglucosamine (GlcNAc) occurs on multiple residues, including histone H3 serine 10, and is cell cycle-regulatedQ35423830
A bridging model for persistence of a polycomb group protein complex through DNA replication in vitroQ36075103
Requirement of ATM-dependent monoubiquitylation of histone H2B for timely repair of DNA double-strand breaksQ36095690
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elementsQ36201234
Epigenetics, histone H3 variants, and the inheritance of chromatin statesQ36238576
RNA synthesis and histone acetylation during the course of gene activation in lymphocytesQ36457890
Chromatin challenges during DNA replication and repairQ36744476
Marking histone H3 variants: how, when and why?Q36926288
Nucleosome destabilization in the epigenetic regulation of gene expressionQ37024525
Chromodomain-mediated oligomerization of HP1 suggests a nucleosome-bridging mechanism for heterochromatin assembly.Q37118383
Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability.Q37377321
Blocking by Histones of Accessibility to DNA in Chromatin: Addition of HistonesQ37499458
Predictive chromatin signatures in the mammalian genomeQ37609802
Understanding the language of Lys36 methylation at histone H3.Q37672319
Fast signals and slow marks: the dynamics of histone modificationsQ37777769
Chromatin dynamics and the repair of DNA double strand breaksQ37826623
The double face of the histone variant H3.3.Q37832128
Epigenetic inheritance: uncontested?Q37842140
Histone ADP-ribosylation in DNA repair, replication and transcription.Q37899464
Studies of the DNA binding properties of histone H4 amino terminus. Thermal denaturation studies reveal that acetylation markedly reduces the binding constant of the H4 "tail" to DNA.Q38322516
Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histonesQ38343707
P433issue3
P407language of work or nameEnglishQ1860
P304page(s)259-66
P577publication date2013-03-01
P1433published inNature Structural & Molecular BiologyQ1071739
P1476titleRegulation of nucleosome dynamics by histone modifications
P478volume20

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cites work (P2860)
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Q35675240Overlapping Functions between SWR1 Deletion and H3K56 Acetylation in Candida albicans
Q58562536Oxidation of 8-oxo-7,8-dihydro-2'-deoxyguanosine leads to substantial DNA-histone cross-links within nucleosome core particles
Q34970694PGC1α -1 Nucleosome Position and Splice Variant Expression and Cardiovascular Disease Risk in Overweight and Obese Individuals
Q38663683Phospho-ΔNp63α/microRNA network modulates epigenetic regulatory enzymes in squamous cell carcinomas
Q47159005Post-Translational Modification of Human Histone by Wide Tolerance of Acetylation
Q26770764Post-Translational Modifications of Histones in Vertebrate Neurogenesis
Q26797870Post-transcriptional gene silencing, transcriptional gene silencing and human immunodeficiency virus
Q51667078Preparation, Biochemical Analysis, and Structure Determination of Methyllysine Readers.
Q64268640Promise of G-Quadruplex Structure Binding Ligands as Epigenetic Modifiers with Anti-Cancer Effects
Q37116118Promoter H3K4 methylation dynamically reinforces activation-induced pathways in human CD4 T cells
Q26849461Protein and DNA modifications: evolutionary imprints of bacterial biochemical diversification and geochemistry on the provenance of eukaryotic epigenetics
Q38182451Proteolytic clipping of histone tails: the emerging role of histone proteases in regulation of various biological processes.
Q46459118Purification of Yeast Native Reagents for the Analysis of Chromatin Function-I: Nucleosomes for Reconstitution and Manipulation of Histone Marks
Q91753971Quantitative modelling predicts the impact of DNA methylation on RNA polymerase II traffic
Q58855679Quinoline-Based p300 Histone Acetyltransferase Inhibitors with Pro-apoptotic Activity in Human Leukemia U937 Cells
Q39069338Recent insights from in vitro single-molecule studies into nucleosome structure and dynamics.
Q50588326Regulation of Hox orthologues in the oyster Crassostrea gigas evidences a functional role for promoter DNA methylation in an invertebrate.
Q26999239Regulation of alternative splicing by local histone modifications: potential roles for RNA-guided mechanisms
Q26853177Regulation of type I interferon responses
Q38164307Regulatory variation: an emerging vantage point for cancer biology
Q48257532Relationship between histone modifications and transcription factor binding is protein family specific
Q35679542Release and activity of histone in diseases
Q38165642Remodelling chromatin to shape development of plants
Q47912624Repeated methamphetamine and modafinil induce differential cognitive effects and specific histone acetylation and DNA methylation profiles in the mouse medial prefrontal cortex.
Q35105237Rescue of DNA damage-stalled RNA Pol II: histone H2B in action
Q38721461Research on cruciferous vegetables, indole-3-carbinol, and cancer prevention: A tribute to Lee W. Wattenberg
Q34080765Resolving acetylated and phosphorylated proteins by neutral urea Triton-polyacrylamide gel electrophoresis: NUT-PAGE
Q64039896Revisiting Histone Deacetylases in Human Tumorigenesis: The Paradigm of Urothelial Bladder Cancer
Q33947793Role of chromatin in water stress responses in plants
Q38232195Role of epigenetics in EBV regulation and pathogenesis
Q38601667Role of remodeling and spacing factor 1 in histone H2A ubiquitination-mediated gene silencing.
Q50437679SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development.
Q34217607SIN3 is critical for stress resistance and modulates adult lifespan
Q47347246Shaping epigenetic memory via genomic bookmarking
Q36809507Signalling couples hair follicle stem cell quiescence with reduced histone H3 K4/K9/K27me3 for proper tissue homeostasis
Q42875495Simulations suggest pharmacological methods for rescuing long-term potentiation
Q38876613Slow Chromatin Dynamics Allow Polycomb Target Genes to Filter Fluctuations in Transcription Factor Activity
Q36538827Small Molecule Inhibitors of BAF; A Promising Family of Compounds in HIV-1 Latency Reversal
Q41975283Spt6: two fundamentally distinct functions in the regulation of histone modification
Q34157702Stable-isotope-labeled histone peptide library for histone post-translational modification and variant quantification by mass spectrometry
Q92003087Strategies for Generating Modified Nucleosomes: Applications within Structural Biology Studies
Q35261061Stress-induced nuclear RNA degradation pathways regulate yeast bromodomain factor 2 to promote cell survival
Q37415610Stress-induced phosphorylation of Thr486 in c-Myb by p38 mitogen-activated protein kinases attenuates conjugation of SUMO-2/3
Q36238292Structural analysis of nucleosomal barrier to transcription
Q36800023Synergistic Modification Induced Specific Recognition between Histone and TRIM24 via Fluctuation Correlation Network Analysis
Q38367820Synthetic epigenetics-towards intelligent control of epigenetic states and cell identity
Q37584747Systems approaches to human autoimmune diseases
Q35059373TFIIH subunit alterations causing xeroderma pigmentosum and trichothiodystrophy specifically disturb several steps during transcription
Q59830619Targeting Metalloenzymes for Therapeutic Intervention
Q34421279Targeting histone lysine demethylases - progress, challenges, and the future
Q26746038Targeting histone methyltransferases and demethylases in clinical trials for cancer therapy
Q37032666Techniques and Approaches to Genetic Analyses in Nephrological Disorders
Q89638553The "ART" of Epigenetics in Melanoma: From histone "Alterations, to Resistance and Therapies"
Q90411371The AREB1 Transcription Factor Influences Histone Acetylation to Regulate Drought Responses and Tolerance in Populus trichocarpa
Q92799343The Chromatin Environment Around Interneuron Genes in Oligodendrocyte Precursor Cells and Their Potential for Interneuron Reprograming
Q61442990The EZH2 SANT1 domain is a histone reader providing sensitivity to the modification state of the H4 tail
Q35754687The Epigenome of Schistosoma mansoni Provides Insight about How Cercariae Poise Transcription until Infection
Q92964666The Epstein-Barr Virus BMRF1 Protein Activates Transcription and Inhibits the DNA Damage Response by Binding NuRD
Q35233511The Groucho co-repressor is primarily recruited to local target sites in active chromatin to attenuate transcription
Q35737433The Nucleosome Acidic Patch Regulates the H2B K123 Monoubiquitylation Cascade and Transcription Elongation in Saccharomyces cerevisiae
Q39362068The Roles of Long Non-Protein-Coding RNAs in Osteo-Adipogenic Lineage Commitment.
Q34525512The TIP60 Complex Regulates Bivalent Chromatin Recognition by 53BP1 through Direct H4K20me Binding and H2AK15 Acetylation.
Q36003889The WOR1 5' untranslated region regulates white-opaque switching in Candida albicans by reducing translational efficiency
Q38698293The Wnt/β-catenin and PI3K/Akt signaling pathways promote EMT in gastric cancer by epigenetic regulation via H3 lysine 27 acetylation
Q38108700The chromatin landscape of Kaposi's sarcoma-associated herpesvirus
Q40384690The chromatin remodelers RSC and ISW1 display functional and chromatin-based promoter antagonism
Q38219327The complex role of DNA, histones and HMGB1 in the pathogenesis of SLE.
Q55361978The conformation of the histone H3 tail inhibits association of the BPTF PHD finger with the nucleosome.
Q42719830The conformational state of the nucleosome entry-exit site modulates TATA box-specific TBP binding
Q35018071The differential mobilization of histones H3.1 and H3.3 by herpes simplex virus 1 relates histone dynamics to the assembly of viral chromatin
Q40698377The dynamics of DNA methylation and hydroxymethylation during amelogenesis.
Q34552755The histone H2A deubiquitinase USP16 interacts with HERC2 and fine-tunes cellular response to DNA damage
Q35535843The influence of promoter architectures and regulatory motifs on gene expression in Escherichia coli
Q39000118The interaction of MYC with the trithorax protein ASH2L promotes gene transcription by regulating H3K27 modification
Q38845851The oncogenic role of GASC1 in chemically induced mouse skin cancer
Q54999509The phytochemical 3,3'-diindolylmethane decreases expression of AR-controlled DNA damage repair genes through repressive chromatin modifications and is associated with DNA damage in prostate cancer cells.
Q41598898The requirement of histone modification by PRDM12 and Kdm4a for the development of pre-placodal ectoderm and neural crest in Xenopus
Q35634109The role of antigen specificity in the binding of murine monoclonal anti-DNA antibodies to microparticles from apoptotic cells
Q38679240The role of extracellular histone in organ injury
Q35741409Tlx3 promotes glutamatergic neuronal subtype specification through direct interactions with the chromatin modifier CBP.
Q90955778Top-down mass spectrometry of histone modifications in sorghum reveals potential epigenetic markers for drought acclimation
Q27318654Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000
Q40689701Transcriptional coordination of physiological responses in Nannochloropsis oceanica CCMP1779 under light/dark cycles
Q48217824Transcriptome analysis of skin fibroblasts with dominant negative COL3A1 mutations provides molecular insights into the etiopathology of vascular Ehlers-Danlos syndrome.
Q38148089Transgenerational developmental programming
Q28072281Undercover: gene control by metabolites and metabolic enzymes
Q51760891Understanding Epigenetics in the Neurodegeneration of Alzheimer's Disease: SAMP8 Mouse Model.
Q34557106Understanding nucleosome dynamics and their links to gene expression and DNA replication
Q35470460Vision from next generation sequencing: multi-dimensional genome-wide analysis for producing gene regulatory networks underlying retinal development, aging and disease
Q38206369What are memories made of? How Polycomb and Trithorax proteins mediate epigenetic memory
Q89716981Wilson disease: At the crossroads between genetics and epigenetics-A review of the evidence
Q92755646Yeats4 drives ILC lineage commitment via activation of Lmo4 transcription
Q34390229[1,2,4]triazolo[4,3-a]phthalazines: inhibitors of diverse bromodomains
Q53473691[The epigenome. Target for innovative therapies in head and neck carcinoma].

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