Transcriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea

scientific article (publication date: 2012)

Transcriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea is …
instance of (P31):
scholarly articleQ13442814

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P819ADS bibcode2012PLoSO...734447R
P356DOI10.1371/JOURNAL.PONE.0034447
P3181OpenCitations bibliographic resource ID1757942
P932PMC publication ID3319590
P698PubMed publication ID22496805
P5875ResearchGate publication ID223978066

P50authorBrenton R. GraveleyQ40240855
P2093author name stringMichael Horowitz
Dasaradhi Palakodeti
Yi-Chien Lu
Alissa M Resch
P2860cites workUltrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
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The cellular distribution and kinase activity of the Cdk family member Pctaire1 in the adult mouse brain and testis suggest functions in differentiationQ28140121
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Molecular phylogeny of land and freshwater planarians (Tricladida, Platyhelminthes): from freshwater to land and backQ28273647
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Deficiencies in DNA damage repair limit the function of haematopoietic stem cells with ageQ28505636
A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heartQ28593731
Cyclin-dependent kinase 5-dependent phosphorylation of Pctaire1 regulates dendrite developmentQ28594788
Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservationQ40773029
Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterraneaQ41854853
Identification of genes needed for regeneration, stem cell function, and tissue homeostasis by systematic gene perturbation in planariaQ41868332
Molecular analysis of stem cells and their descendants during cell turnover and regeneration in the planarian Schmidtea mediterraneaQ41922401
Functional and metabolic remodelling in GLUT4-deficient hearts confers hyper-responsiveness to substrate interventionQ46811377
SMEDWI-2 is a PIWI-like protein that regulates planarian stem cellsQ48111456
Valosin-containing protein/p97 interacts with sperm-activating and sperm-attracting factor (SAAF) in the ascidian egg and modulates sperm-attracting activity.Q48738020
Major sperm protein signaling promotes oocyte microtubule reorganization prior to fertilization in Caenorhabditis elegans.Q50645924
Muscleblind isoforms are functionally distinct and regulate alpha-actinin splicing.Q51994029
Planarian homologs of netrin and netrin receptor are required for proper regeneration of the central nervous system and the maintenance of nervous system architecture.Q52043748
Studies on the cellular basis of radiation lethality. II. Survival-curve parameters for standardized planarian populations.Q53024170
Sur la migration des cellules de régénération chez les PlanairesQ56007283
Isolation of planarian X-ray-sensitive stem cells by fluorescence-activated cell sortingQ61447956
Contact-dependent inhibition of cortical neurite growth mediated by notch signalingQ73106394
Schmidtea mediterranea phylogeography: an old species surviving on a few Mediterranean islands?Q28743430
Regeneration and the need for simpler model organismsQ28764878
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Expansion of the eukaryotic proteome by alternative splicingQ29615083
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The developmental transcriptome of Drosophila melanogasterQ29617262
Asymmetric cell divisions promote stratification and differentiation of mammalian skinQ29620393
The Schmidtea mediterranea database as a molecular resource for studying platyhelminthes, stem cells and regenerationQ31117991
Cell adhesion in the process of asexual reproduction of tunicatesQ33547030
Sex-specific and lineage-specific alternative splicing in primatesQ33618915
A dual platform approach to transcript discovery for the planarian Schmidtea mediterranea to establish RNAseq for stem cell and regeneration biologyQ33778543
Adhesion molecules in the stem cell niche--more than just staying in shape?Q33830288
A proteomics approach to decipher the molecular nature of planarian stem cellsQ33831051
Identification and analysis of alternative splicing events conserved in human and mouseQ33841124
Human EVI9, a homologue of the mouse myeloid leukemia gene, is expressed in the hematopoietic progenitors and down-regulated during myeloid differentiation of HL60 cellsQ33931854
Loss of DNA mismatch repair imparts a selective advantage in planarian adult stem cellsQ33958108
Sirtuin 1 regulation of developmental genes during differentiation of stem cells.Q34068359
Embryonic expression of the chicken Krüppel-like (KLF) transcription factor gene familyQ34078710
Not your father's planarian: a classic model enters the era of functional genomics.Q34125141
A functional genomic screen in planarians identifies novel regulators of germ cell developmentQ34127490
Interaction of Sox1, Sox2, Sox3 and Oct4 during primary neurogenesisQ34154152
The planarian Schmidtea mediterranea as a model for epigenetic germ cell specification: analysis of ESTs from the hermaphroditic strainQ34234893
Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster.Q34574871
Sox3 functions in a cell-autonomous manner to regulate spermatogonial differentiation in mice.Q34697057
ATP-binding cassette transporters are required for efficient RNA interference in Caenorhabditis elegansQ34886289
SmedGD: the Schmidtea mediterranea genome databaseQ36454142
The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians.Q36666293
Chromatin connections to pluripotency and cellular reprogrammingQ36874359
Cell-cycle regulation in embryonic stem cells: centrosomal decisions on self-renewalQ37769239
The transcriptional and signalling networks of pluripotencyQ37871828
Sox14 is required for transcriptional and developmental responses to 20‐hydroxyecdysone at the onset of drosophila metamorphosisQ38341291
Smed454 dataset: unravelling the transcriptome of Schmidtea mediterraneaQ38503841
The regulation of protein polymerizationQ38685167
Human embryonic stem cells suffer from centrosomal amplification.Q39641991
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue4
P407language of work or nameEnglishQ1860
P921main subjecttranscriptomeQ252857
Schmidtea mediterraneaQ2158498
RNA sequencingQ2542347
P304page(s)e34447
P577publication date2012-01-01
P1433published inPLOS OneQ564954
P1476titleTranscriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea
P478volume7

Reverse relations

cites work (P2860)
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