scholarly article | Q13442814 |
P50 | author | Brenton R. Graveley | Q40240855 |
P2093 | author name string | Michael Horowitz | |
Dasaradhi Palakodeti | |||
Yi-Chien Lu | |||
Alissa M Resch | |||
P2860 | cites work | Ultrafast and memory-efficient alignment of short DNA sequences to the human genome | Q21183894 |
Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex | Q21263197 | ||
The dynamic genome of Hydra | Q22122195 | ||
The genome of the blood fluke Schistosoma mansoni | Q22122228 | ||
The Schistosoma japonicum genome reveals features of host-parasite interplay | Q22122229 | ||
Finishing the euchromatic sequence of the human genome | Q22122488 | ||
Gene ontology: tool for the unification of biology | Q23781406 | ||
Muscleblind proteins regulate alternative splicing | Q24299521 | ||
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics | Q24598325 | ||
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation | Q24627354 | ||
TopHat: discovering splice junctions with RNA-Seq | Q24655505 | ||
Velvet: algorithms for de novo short read assembly using de Bruijn graphs | Q24657623 | ||
The importance of being divisible by three in alternative splicing | Q24817131 | ||
Activated Notch1 target genes during embryonic cell differentiation depend on the cellular context and include lineage determinants and inhibitors | Q27324100 | ||
Genome sequence of the nematode C. elegans: a platform for investigating biology | Q27860527 | ||
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors | Q27860937 | ||
Induction of pluripotent stem cells from adult human fibroblasts by defined factors | Q27860967 | ||
The cellular distribution and kinase activity of the Cdk family member Pctaire1 in the adult mouse brain and testis suggest functions in differentiation | Q28140121 | ||
The virtuoso of versatility: POU proteins that flex to fit | Q28200215 | ||
Molecular phylogeny of land and freshwater planarians (Tricladida, Platyhelminthes): from freshwater to land and back | Q28273647 | ||
Discovering microRNAs from deep sequencing data using miRDeep | Q28275278 | ||
Having it both ways: Sox protein function between conservation and innovation | Q28282314 | ||
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
Deficiencies in DNA damage repair limit the function of haematopoietic stem cells with age | Q28505636 | ||
A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart | Q28593731 | ||
Cyclin-dependent kinase 5-dependent phosphorylation of Pctaire1 regulates dendrite development | Q28594788 | ||
Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation | Q40773029 | ||
Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea | Q41854853 | ||
Identification of genes needed for regeneration, stem cell function, and tissue homeostasis by systematic gene perturbation in planaria | Q41868332 | ||
Molecular analysis of stem cells and their descendants during cell turnover and regeneration in the planarian Schmidtea mediterranea | Q41922401 | ||
Functional and metabolic remodelling in GLUT4-deficient hearts confers hyper-responsiveness to substrate intervention | Q46811377 | ||
SMEDWI-2 is a PIWI-like protein that regulates planarian stem cells | Q48111456 | ||
Valosin-containing protein/p97 interacts with sperm-activating and sperm-attracting factor (SAAF) in the ascidian egg and modulates sperm-attracting activity. | Q48738020 | ||
Major sperm protein signaling promotes oocyte microtubule reorganization prior to fertilization in Caenorhabditis elegans. | Q50645924 | ||
Muscleblind isoforms are functionally distinct and regulate alpha-actinin splicing. | Q51994029 | ||
Planarian homologs of netrin and netrin receptor are required for proper regeneration of the central nervous system and the maintenance of nervous system architecture. | Q52043748 | ||
Studies on the cellular basis of radiation lethality. II. Survival-curve parameters for standardized planarian populations. | Q53024170 | ||
Sur la migration des cellules de régénération chez les Planaires | Q56007283 | ||
Isolation of planarian X-ray-sensitive stem cells by fluorescence-activated cell sorting | Q61447956 | ||
Contact-dependent inhibition of cortical neurite growth mediated by notch signaling | Q73106394 | ||
Schmidtea mediterranea phylogeography: an old species surviving on a few Mediterranean islands? | Q28743430 | ||
Regeneration and the need for simpler model organisms | Q28764878 | ||
Java Treeview--extensible visualization of microarray data | Q29547226 | ||
Open source clustering software | Q29547702 | ||
Expansion of the eukaryotic proteome by alternative splicing | Q29615083 | ||
CDD: a database of conserved domain alignments with links to domain three-dimensional structure | Q29616047 | ||
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea | Q29616591 | ||
The developmental transcriptome of Drosophila melanogaster | Q29617262 | ||
Asymmetric cell divisions promote stratification and differentiation of mammalian skin | Q29620393 | ||
The Schmidtea mediterranea database as a molecular resource for studying platyhelminthes, stem cells and regeneration | Q31117991 | ||
Cell adhesion in the process of asexual reproduction of tunicates | Q33547030 | ||
Sex-specific and lineage-specific alternative splicing in primates | Q33618915 | ||
A dual platform approach to transcript discovery for the planarian Schmidtea mediterranea to establish RNAseq for stem cell and regeneration biology | Q33778543 | ||
Adhesion molecules in the stem cell niche--more than just staying in shape? | Q33830288 | ||
A proteomics approach to decipher the molecular nature of planarian stem cells | Q33831051 | ||
Identification and analysis of alternative splicing events conserved in human and mouse | Q33841124 | ||
Human EVI9, a homologue of the mouse myeloid leukemia gene, is expressed in the hematopoietic progenitors and down-regulated during myeloid differentiation of HL60 cells | Q33931854 | ||
Loss of DNA mismatch repair imparts a selective advantage in planarian adult stem cells | Q33958108 | ||
Sirtuin 1 regulation of developmental genes during differentiation of stem cells. | Q34068359 | ||
Embryonic expression of the chicken Krüppel-like (KLF) transcription factor gene family | Q34078710 | ||
Not your father's planarian: a classic model enters the era of functional genomics. | Q34125141 | ||
A functional genomic screen in planarians identifies novel regulators of germ cell development | Q34127490 | ||
Interaction of Sox1, Sox2, Sox3 and Oct4 during primary neurogenesis | Q34154152 | ||
The planarian Schmidtea mediterranea as a model for epigenetic germ cell specification: analysis of ESTs from the hermaphroditic strain | Q34234893 | ||
Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster. | Q34574871 | ||
Sox3 functions in a cell-autonomous manner to regulate spermatogonial differentiation in mice. | Q34697057 | ||
ATP-binding cassette transporters are required for efficient RNA interference in Caenorhabditis elegans | Q34886289 | ||
SmedGD: the Schmidtea mediterranea genome database | Q36454142 | ||
The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians. | Q36666293 | ||
Chromatin connections to pluripotency and cellular reprogramming | Q36874359 | ||
Cell-cycle regulation in embryonic stem cells: centrosomal decisions on self-renewal | Q37769239 | ||
The transcriptional and signalling networks of pluripotency | Q37871828 | ||
Sox14 is required for transcriptional and developmental responses to 20‐hydroxyecdysone at the onset of drosophila metamorphosis | Q38341291 | ||
Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea | Q38503841 | ||
The regulation of protein polymerization | Q38685167 | ||
Human embryonic stem cells suffer from centrosomal amplification. | Q39641991 | ||
P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
P6216 | copyright status | copyrighted | Q50423863 |
P433 | issue | 4 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | transcriptome | Q252857 |
Schmidtea mediterranea | Q2158498 | ||
RNA sequencing | Q2542347 | ||
P304 | page(s) | e34447 | |
P577 | publication date | 2012-01-01 | |
P1433 | published in | PLOS One | Q564954 |
P1476 | title | Transcriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea | |
P478 | volume | 7 |
Q35804225 | A functional genomics screen identifies an Importin-α homolog as a regulator of stem cell function and tissue patterning during planarian regeneration. |
Q42209683 | A lack of commitment for over 500 million years: conserved animal stem cell pluripotency. |
Q42358727 | A mex3 homolog is required for differentiation during planarian stem cell lineage development |
Q34660002 | A simple model to explain evolutionary trends of eukaryotic gene architecture and expression: how competition between splicing and cleavage/polyadenylation factors may affect gene expression and splice-site recognition in eukaryotes |
Q41046219 | Closing the circle of germline and stem cells: the Primordial Stem Cell hypothesis. |
Q57936550 | Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation |
Q37162242 | Conserved functional antagonism of CELF and MBNL proteins controls stem cell-specific alternative splicing in planarians |
Q41899180 | Cytoplasmic poly (A)-binding protein critically regulates epidermal maintenance and turnover in the planarian Schmidtea mediterranea. |
Q30946349 | Digital gene expression approach over multiple RNA-Seq data sets to detect neoblast transcriptional changes in Schmidtea mediterranea |
Q36548063 | Epigenetic regulation of planarian stem cells by the SET1/MLL family of histone methyltransferases |
Q37321695 | Essential role for the planarian intestinal GATA transcription factor in stem cells and regeneration |
Q38862683 | Exploring the sexual diversity of flatworms: Ecology, evolution, and the molecular biology of reproduction |
Q30617929 | Functional analysis of Girardia tigrina transcriptome seeds pipeline for anthelmintic target discovery |
Q27342884 | GPCRs Direct Germline Development and Somatic Gonad Function in Planarians |
Q37347972 | Genome-Wide Analysis of Polyadenylation Events in Schmidtea mediterranea |
Q40958923 | Identification of HECT E3 ubiquitin ligase family genes involved in stem cell regulation and regeneration in planarians |
Q52373731 | Identification of multiple isomeric core chitobiose-modified high mannose and paucimannose N-glycans in the planarian Schmidtea mediterranea. |
Q37371776 | Identification of neoblast- and regeneration-specific miRNAs in the planarian Schmidtea mediterranea. |
Q47304367 | PlanNET: Homology-based predicted interactome for multiple planarian transcriptomes |
Q41990372 | Single-cell analysis reveals functionally distinct classes within the planarian stem cell compartment |
Q26829049 | Specialized progenitors and regeneration |
Q38062396 | Stem cell dynamics in Cnidaria: are there unifying principles? |
Q27318426 | The CCR4-NOT complex mediates deadenylation and degradation of stem cell mRNAs and promotes planarian stem cell differentiation |
Q26314691 | The ancestral gene repertoire of animal stem cells |
Q38116923 | The history and enduring contributions of planarians to the study of animal regeneration. |
Q35044492 | The planarian regeneration transcriptome reveals a shared but temporally shifted regulatory program between opposing head and tail scenarios. |
Q37520810 | Transcriptional signatures of somatic neoblasts and germline cells in Macrostomum lignano |
Q107750894 | Ultrastructure of Neoblasts in Turbellarian Geocentrophora wagini Timoshkin, 1984 (Lecithoepitheliata: Plathelminthes) |
Q27315030 | zic-1 Expression in Planarian neoblasts after injury controls anterior pole regeneration |
Search more.