PLIDflow: an open-source workflow for the online analysis of protein–ligand docking using galaxy

scientific article

PLIDflow: an open-source workflow for the online analysis of protein–ligand docking using galaxy is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/BIOINFORMATICS/BTAA481

P2093author name stringFernando Gonzalez-Nilo
Oswaldo Trelles
Eugenia Ulzurrun
Yorley Duarte
Esteban Perez-Wohlfeil
P2860cites workOpen Babel: An open chemical toolboxQ21198766
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculationsQ27861014
Calculating an optimal box size for ligand docking and virtual screening against experimental and predicted binding pocketsQ27902293
Is It Reliable to Use Common Molecular Docking Methods for Comparing the Binding Affinities of Enantiomer Pairs for Their Protein Target?Q28833848
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibilityQ29547658
JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance ComputingQ35747690
Automated prediction of ligand-binding sites in proteinsQ46283837
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy functionQ56885198
PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKa PredictionsQ57129760
Using a Consensus Docking Approach to Predict Adverse Drug Reactions in Combination Drug Therapies for Gulf War IllnessQ58114472
Comprehensive evaluation of ten docking programs on a diverse set of protein–ligand complexes: the prediction accuracy of sampling power and scoring powerQ60361933
TeachOpenCADD-KNIME: A Teaching Platform for Computer-Aided Drug Design Using KNIME WorkflowsQ90710291
GCAC: galaxy workflow system for predictive model building for virtual screeningQ91337503
P433issue14
P921main subjectopen-source softwareQ1130645
P304page(s)4203-4205
P577publication date2020-05-16
P1433published inComputer applications in the biosciences : CABIOSQ27710219
P1476titlePLIDflow: an open-source workflow for the online analysis of protein–ligand docking using galaxy
P478volume36

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