Abstract is: Zaida Ann "Zan" Luthey-Schulten is the William and Janet Lycan Professor of Chemistry at the University of Illinois at Urbana-Champaign. She was promoted to professor in 2004. She is also involved with the NASA Astrobiology Institute. Luthey-Schulten develops molecular dynamics simulations, focusing on individual molecules and groups of molecules and the cellular processes occurring within them. Models are verified and improved through comparison to experimental data from independent researchers. In 2011, her group simulated the cellular architecture of an entire cell and its surrounding cytoplasm, the first time that such an extensive and complex cellular system had been modeled. The three-dimensional model combined ribosome data and other descriptors of Escherichia coli. Representing the architectural features of the interior of the cell suggested that crowding might significantly affect reactions that occur within the cells. More recent work has focused on the modelling of a methane-producing archaean.
| human | Q5 |
| P2381 | Academic Tree ID | 61966 |
| P2456 | DBLP author ID | 73/2832 |
| P6178 | Dimensions author ID | 010531315367.35 |
| P646 | Freebase ID | /m/012g4gtr |
| P1960 | Google Scholar author ID | caHeH0UAAAAJ |
| P2798 | Loop ID | 799088 |
| P856 | official website | http://www.chemistry.illinois.edu/faculty/Zaida_Luthey_Schulten.html |
| P496 | ORCID iD | 0000-0001-9749-8367 |
| P1153 | Scopus author ID | 35600781600 |
| P10861 | Springer Nature person ID | 010531315367.35 |
| P1556 | zbMATH author ID | luthey-schulten.zaida |
| P27 | country of citizenship | United States of America | Q30 |
| P185 | doctoral student | Rommie Amaro | Q21095509 |
| P69 | educated at | University of Southern California | Q4614 |
| Harvard University | Q13371 | ||
| P108 | employer | University of Illinois Urbana–Champaign | Q457281 |
| University of Illinois system | Q1145814 | ||
| P101 | field of work | chemistry | Q2329 |
| P6104 | maintained by WikiProject | WikiProject Mathematics | Q8487137 |
| P106 | occupation | chemist | Q593644 |
| researcher | Q1650915 | ||
| P21 | sex or gender | female | Q6581072 |
| Q57971767 | A Network of Conserved Interactions Regulates the Allosteric Signal in a Glutamine Amidotransferase† |
| Q30330157 | Ab initio protein structure prediction. |
| Q90634639 | An in-silico human cell model reveals the influence of spatial organization on RNA splicing |
| Q27701555 | Analysis of the Resistance Mechanism of a Benzoxaborole Inhibitor Reveals Insight into the Leucyl-tRNA Synthetase Editing Mechanism |
| Q36173423 | Assembly of the five-way junction in the ribosomal small subunit using hybrid MD-Gō simulations |
| Q91296892 | Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism |
| Q52035295 | Backbone dynamics, fast folding, and secondary structure formation in helical proteins and peptides. |
| Q36806838 | Capture and quality control mechanisms for adenosine-5'-triphosphate binding |
| Q38678663 | Careful accounting of extrinsic noise in protein expression reveals correlations among its sources |
| Q38909282 | Challenges of Integrating Stochastic Dynamics and Cryo-Electron Tomograms in Whole-Cell Simulations |
| Q51993686 | Classical force field parameters for the heme prosthetic group of cytochrome c. |
| Q47154819 | Combining in Vitro and in Silico Single-Molecule Force Spectroscopy to Characterize and Tune Cellulosomal Scaffoldin Mechanics |
| Q89582504 | Complete structure of the chemosensory array core signalling unit in an E. coli minicell strain |
| Q57971727 | Computational Modeling of Fluctuations in Energy and Metabolic Pathways of Methanogenic Archaea |
| Q47155283 | Correction: Parametric studies of metabolic cooperativity in Escherichia coli colonies: Strain and geometric confinement effects |
| Q57971732 | Corrigendum: DNA looping increases the range of bistability in a stochastic model of the lac genetic switch (2013 Phys. Biol. 10 026002) |
| Q47649985 | CryoEM-based hybrid modeling approaches for structure determination |
| Q57971771 | Cytochrome c2Exit Strategy: Dissociation Studies and Evolutionary Implications |
| Q51258579 | DNA looping increases the range of bistability in a stochastic model of the lac genetic switch. |
| Q51546921 | Determining the stability of genetic switches: explicitly accounting for mRNA noise. |
| Q35146238 | Developing an energy landscape for the novel function of a (beta/alpha)8 barrel: ammonia conduction through HisF. |
| Q57804688 | Direction Matters: Monovalent Streptavidin/Biotin Complex under Load |
| Q34974676 | Dynamical networks in tRNA:protein complexes |
| Q35596397 | Dynamics of Recognition between tRNA and elongation factor Tu |
| Q83232139 | Essential metabolism for a minimal cell |
| Q39486150 | Estimation of Relative Protein-RNA Binding Strengths from Fluctuations in the Bound State |
| Q38831966 | Evaluation of Emerging Energy-Efficient Heterogeneous Computing Platforms for Biomolecular and Cellular Simulation Workloads |
| Q41475933 | Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes. |
| Q30350196 | Evolutionary profiles derived from the QR factorization of multiple structural alignments gives an economy of information. |
| Q33932608 | Evolutionary profiles from the QR factorization of multiple sequence alignments |
| Q35596415 | Exit strategies for charged tRNA from GluRS |
| Q37636974 | Experimental and computational determination of tRNA dynamics |
| Q34310778 | Exploring residue component contributions to dynamical network models of allostery |
| Q50586335 | Extreme genetic code optimality from a molecular dynamics calculation of amino acid polar requirement. |
| Q57971744 | Extrinsic Noise Driven Phenotype Switching in a Self-Regulating Gene |
| Q52583323 | Free energy simulations reveal molecular mechanism for functional switch of a DNA helicase. |
| Q28744326 | Functional role of ribosomal signatures |
| Q100502482 | Generalized correlation-based dynamical network analysis: a new high-performance approach for identifying allosteric communications in molecular dynamics trajectories |
| Q37590790 | Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function. |
| Q28595650 | Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans |
| Q37117908 | Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population. |
| Q33488340 | Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4. |
| Q91563871 | In Situ Conformational Changes of the Escherichia coli Serine Chemoreceptor in Different Signaling States |
| Q47403541 | Influence of montmorillonite on nucleotide oligomerization reactions: a molecular dynamics study |
| Q24554487 | Is the olfactory receptor a metalloprotein? |
| Q92074950 | Kinetic Modeling of the Genetic Information Processes in a Minimal Cell |
| Q30544055 | Lattice Microbes: high-performance stochastic simulation method for the reaction-diffusion master equation |
| Q27676516 | Leucyl-tRNA synthetase editing domain functions as a molecular rheostat to control codon ambiguity in Mycoplasma pathogens |
| Q57971762 | Long time-scale simulations of in vivo diffusion using GPU hardware |
| Q92974326 | Mechanisms of Nanonewton Mechanostability in a Protein Complex Revealed by Molecular Dynamics Simulations and Single-Molecule Force Spectroscopy |
| Q57971778 | Molecular dynamics simulations of substrate channeling through an α–β barrel protein |
| Q28757251 | Molecular signatures of ribosomal evolution |
| Q33254249 | MultiSeq: unifying sequence and structure data for evolutionary analysis |
| Q30352148 | Multiple Alignment of protein structures and sequences for VMD. |
| Q58009242 | NAMD goes quantum: an integrative suite for hybrid simulations |
| Q41467484 | Native conformational dynamics of the spliceosomal U1A protein |
| Q36393777 | NetworkView: 3D display and analysis of protein·RNA interaction networks |
| Q27333733 | Noise contributions in an inducible genetic switch: a whole-cell simulation study |
| Q24597654 | On the evolution of structure in aminoacyl-tRNA synthetases |
| Q46621345 | On the physical basis of the amino acid polar requirement. |
| Q30328634 | On the structure of hisH: protein structure prediction in the context of structural and functional genomics. |
| Q52005571 | Optimizing physical energy functions for protein folding. |
| Q38618315 | Parametric studies of metabolic cooperativity in Escherichia coli colonies: Strain and geometric confinement effects |
| Q42369662 | Population FBA predicts metabolic phenotypes in yeast. |
| Q37669372 | Protein-guided RNA dynamics during early ribosome assembly. |
| Q41634547 | Ribosome biogenesis in replicating cells: Integration of experiment and theory |
| Q47956089 | Role of Electrostatics in Protein-RNA Binding: The Global vs the Local Energy Landscape |
| Q57233436 | Role of Water in Transient Cytochrome c2Docking |
| Q98203228 | Scalable molecular dynamics on CPU and GPU architectures with NAMD |
| Q30429818 | Self-consistently optimized energy functions for protein structure prediction by molecular dynamics |
| Q50051872 | Simulating Biological Processes: Stochastic Physics from Whole Cells to Colonies. |
| Q33690634 | Simulation of reaction diffusion processes over biologically relevant size and time scales using multi-GPU workstations. |
| Q35223683 | Spatially-resolved metabolic cooperativity within dense bacterial colonies |
| Q57971783 | Statistical mechanical refinement of protein structure prediction schemes. II. Mayer cluster expansion approach |
| Q57971785 | Statistical mechanical refinement of protein structure prediction schemes: Cumulant expansion approach |
| Q57971751 | Stochastic Simulations of Cellular Processes: From Single Cells to Colonies |
| Q43024589 | Structural basis for thermostability and identification of potential active site residues for adenylate kinases from the archaeal genus Methanococcus. |
| Q34350539 | Structural elements in IGP synthase exclude water to optimize ammonia transfer. |
| Q47715773 | Structural intermediates and folding events in the early assembly of the ribosomal small subunit |
| Q92564666 | Structure and dynamics of the E. coli chemotaxis core signaling complex by cryo-electron tomography and molecular simulations |
| Q47633882 | The Conformational Change in Elongation Factor Tu Involves Separation of Its Domains |
| Q28768709 | The evolutionary history of Cys-tRNACys formation |
| Q57971790 | The foldon universe: a survey of structural similarity and self-recognition of independently folding units 1 1Edited by F. E. Cohen |
| Q30497195 | The role of L1 stalk-tRNA interaction in the ribosome elongation cycle |
| Q104744033 | Theoretical Description of the Primary Proton-Coupled Electron Transfer Reaction in the Cytochrome bc1 Complex |
| Q36076211 | Toward a Whole-Cell Model of Ribosome Biogenesis: Kinetic Modeling of SSU Assembly |
| Q28657421 | Towards a computational model of a methane producing archaeum |
| Q34186231 | Variations in the fast folding rates of the lambda-repressor: a hybrid molecular dynamics study |
| Q30354215 | Visualizing the dual space of biological molecules. |
| Q30339048 | Water in protein structure prediction |
| Q36688311 | Whole Cell Modeling: From Single Cells to Colonies |
| Q21095509 | Rommie Amaro | doctoral advisor | P184 |
| Zaida Luthey-Schulten | wikipedia |
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