Chromatin immunoprecipitation to analyze DNA binding sites of HMGA2

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Chromatin immunoprecipitation to analyze DNA binding sites of HMGA2 is …
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P819ADS bibcode2011PLoSO...618837W
P356DOI10.1371/JOURNAL.PONE.0018837
P8608Fatcat IDrelease_2zrmnexcpnd3zdhd6v7zcsghnm
P3181OpenCitations bibliographic resource ID3752080
P932PMC publication ID3077414
P698PubMed publication ID21533145
P5875ResearchGate publication ID51089338

P2093author name stringAnke Meyer
Carolin Bösche
Jörn Bullerdiek
Nina Winter
Rolf Nimzyk
P2860cites workInitial sequencing and analysis of the human genomeQ21045365
HMGA2 regulates transcription of the Imp2 gene via an intronic regulatory element in cooperation with nuclear factor-kappaBQ24302309
High-level expression of DNA architectural factor HMGA2 and its association with nucleosomes in human embryonic stem cellsQ24310714
HMGA2 exhibits dRP/AP site cleavage activity and protects cancer cells from DNA-damage-induced cytotoxicity during chemotherapyQ24313419
DNA architectural factor and proto-oncogene HMGA2 regulates key developmental genes in pluripotent human embryonic stem cellsQ24318703
The high mobility group protein HMGA2: a co-regulator of chromatin structure and pluripotency in stem cells?Q24339090
ALDH1A1 is a marker for malignant prostate stem cells and predictor of prostate cancer patients' outcomeQ24631043
Identification and functional characterization of paxillin as a target of protein tyrosine phosphatase receptor TQ24646348
Hmga2 promotes neural stem cell self-renewal in young but not old mice by reducing p16Ink4a and p19Arf ExpressionQ24658265
The Bioperl toolkit: Perl modules for the life sciencesQ24682183
Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4Q25938983
Basic local alignment search toolQ25938991
Chromatin immunoprecipitation: a tool for studying histone acetylation and transcription factor binding.Q51599362
Sucrase-isomaltase is an independent prognostic marker for colorectal carcinoma.Q53459635
Enhancement of growth of human colon tumor cell lines by feeder layers of murine fibroblastsQ72049941
Pre-clinical validation of early molecular markers of sensitivity to aromatase inhibitors in a mouse model of post-menopausal hormone-sensitive breast cancerQ80633731
Vascular endothelial growth factor and endoglin expression in colorectal cancerQ84850165
The solution structure of an HMG-I(Y)-DNA complex defines a new architectural minor groove binding motifQ27741511
HMGI/Y proteins: flexible regulators of transcription and chromatin structureQ28201754
The A.T-DNA-binding domain of mammalian high mobility group I chromosomal proteins. A novel peptide motif for recognizing DNA structureQ28259556
Recurrent rearrangements in the high mobility group protein gene, HMGI-C, in benign mesenchymal tumoursQ28297180
MicroRNA-7, a homeobox D10 target, inhibits p21-activated kinase 1 and regulates its functionsQ28297593
Discovering high mobility group A molecular partners in tumour cellsQ30780691
Spermatogenesis associated retrogenes are expressed in the human ovary and ovarian cancersQ33424526
Regulation of DNA-dependent activities by the functional motifs of the high-mobility-group chromosomal proteinsQ33689010
Molecular biology of HMGA proteins: hubs of nuclear functionQ34095287
A human cell line from a pleural effusion derived from a breast carcinomaQ34207627
Reelin expression in human prostate cancer: a marker of tumor aggressiveness based on correlation with grade.Q34574793
Q2ChIP, a quick and quantitative chromatin immunoprecipitation assay, unravels epigenetic dynamics of developmentally regulated genes in human carcinoma cellsQ34608700
The HMGA proteins: a myriad of functions (Review).Q34737577
A mammalian high mobility group protein recognizes any stretch of six A.T base pairs in duplex DNA.Q35592304
Roles of jumonji and jumonji family genes in chromatin regulation and developmentQ36484713
Roles of HMGA proteins in cancerQ37001370
Protein expression analysis of inflammation-related colon carcinogenesisQ37235584
HMGA molecular network: From transcriptional regulation to chromatin remodelingQ37592470
Radiation-induced G1 arrest is selectively mediated by the p53-WAF1/Cip1 pathway in human thyroid cellsQ38295329
Specific recognition of AT-rich DNA sequences by the mammalian high mobility group protein AT-hook 2: a SELEX studyQ38297079
Reliable gene expression measurements from degraded RNA by quantitative real-time PCR depend on short amplicons and a proper normalizationQ40410514
High-mobility-group chromosomal proteins: architectural components that facilitate chromatin function.Q41080193
Two human breast cancer cell lines showing decreasing telomeric repeat length during early in vitro passagingQ41438686
Expression of SV40 T-antigen in lipoma cells with a chromosomal translocation T(3;12) is not sufficient for direct immortalizationQ41633224
NB4, a maturation inducible cell line with t(15;17) marker isolated from a human acute promyelocytic leukemia (M3).Q41692539
Growth regulation of normal thyroids and thyroid tumors in man.Q41752528
Characterization of a human follicular thyroid carcinoma cell line (UCLA RO 82 W-1).Q42494871
Establishment and biological characterization of an in vitro human cytomegalovirus latency modelQ42817187
Monoclonal antibody and enzymatic profiles of human malignant T-lymphoid cells and derived cell lines.Q42822797
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesImageJQ1659584
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectminor groove of adenine-thymine-rich DNA bindingQ14916195
High mobility group AT-hook 2Q5630986
P304page(s)e18837
P577publication date2011-01-01
P1433published inPLOS OneQ564954
P1476titleChromatin immunoprecipitation to analyze DNA binding sites of HMGA2
P478volume6

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cites work (P2860)
Q52602382A CLK3-HMGA2 Alternative Splicing Axis Impacts Human Hematopoietic Stem Cell Molecular Identity throughout Development.
Q33999494A cytoplasmic negative regulator isoform of ATF7 impairs ATF7 and ATF2 phosphorylation and transcriptional activity
Q37219985ATM kinase enables the functional axis of YAP, PML and p53 to ameliorate loss of Werner protein-mediated oncogenic senescence.
Q47265329Binding of high mobility group A proteins to the mammalian genome occurs as a function of AT-content
Q41881025Cell-based high-throughput compound screening reveals functional interaction between oncofetal HMGA2 and topoisomerase I.
Q39334102Downregulation of HMGA2 by the pan-deacetylase inhibitor panobinostat is dependent on hsa-let-7b expression in liver cancer cell lines.
Q38570659Genetic alterations in uterine fibroids - a new direction for pharmacological intervention?
Q34247211Genome-wide analysis of HMGA2 transcription factor binding sites by ChIP on chip in gastric carcinoma cells
Q38264460HMGA proteins as modulators of chromatin structure during transcriptional activation.
Q38107833HMGA2 and high-grade serous ovarian carcinoma
Q36932231HMGA2/TET1/HOXA9 signaling pathway regulates breast cancer growth and metastasis.
Q35977066Hmga2 is necessary for Otx2-dependent exit of embryonic stem cells from the pluripotent ground state
Q34971229Identification of estrogen receptor-related receptor gamma as a direct transcriptional target of angiogenin
Q38497339Probing into the biological processes influenced by ESC factor and oncoprotein HMGA2 using iPSCs
Q37687634Single nucleotide polymorphisms in microRNA genes are associated with cervical cancer susceptibility in a population from Xinjiang Uygur
Q36416243The chromatin-modifying protein HMGA2 promotes atypical teratoid/rhabdoid cell tumorigenicity
Q34883377The high mobility group A2 protein epigenetically silences the Cdh1 gene during epithelial-to-mesenchymal transition

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