Recombination and selection in the evolution of picornaviruses and other Mammalian positive-stranded RNA viruses

scientific article

Recombination and selection in the evolution of picornaviruses and other Mammalian positive-stranded RNA viruses is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/JVI.01076-06
P3181OpenCitations bibliographic resource ID943895
P932PMC publication ID1642140
P698PubMed publication ID16956935

P50authorPeter SimmondsQ28379677
P2860cites workThe 'effective number of codons' used in a geneQ24498142
Comparative genomics of foot-and-mouth disease virusQ24522726
Identification of structural domains involved in astrovirus capsid biologyQ24544145
Poliovirus cell entry: common structural themes in viral cell entry pathwaysQ24550839
A Natural Intergenotypic Recombinant of Hepatitis C Virus Identified in St. PetersburgQ27472858
Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolatesQ27473197
The alphaviruses: gene expression, replication, and evolutionQ27860954
An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic AnalysisQ29308133
Genome variability and capsid structural constraints of hepatitis a virusQ30165022
Evidence of recombination among enterovirusesQ33821082
Genomic features of intertypic recombinant sabin poliovirus strains excreted by primary vaccineesQ33842178
Evidence for positive selection in the capsid protein-coding region of the foot-and-mouth disease virus (FMDV) subjected to experimental passage regimensQ45739115
A procedure for detecting selection in highly variable viral genomes: evidence of positive selection in antigenic regions of capsid protein VP1 of foot-and-mouth disease virus.Q45753381
Methods for the detection of non-random base substitution in virus genes: models of synonymous nucleotide substitution in picornavirus genesQ45755067
Molecular comparison of echovirus 11 strains circulating in Europe during an epidemic of multisystem hemorrhagic disease of infants indicates that evolution generally occurs by recombination.Q47255933
Complete genome sequences of all members of the species Human enterovirus A.Q47421244
Molecular strategy for 'serotyping' of human enterovirusesQ47805578
Sequence analysis of human rhinoviruses in the RNA-dependent RNA polymerase coding region reveals large within-species variation.Q47952637
Cell receptors for picornaviruses as determinants of cell tropism and pathogenesisQ48009204
Phylogenetic analysis of Turkey astroviruses reveals evidence of recombinationQ48092629
Molecular-based reclassification of the bovine enterovirusesQ48102927
Evolution of the genome of Human enterovirus B: incongruence between phylogenies of the VP1 and 3CD regions indicates frequent recombination within the speciesQ48251272
Characterization of a recombinant type 3/type 2 poliovirus isolated from a healthy vaccinee and containing a chimeric capsid protein VP1.Q48258098
Natural genetic recombination between co-circulating heterotypic enterovirusesQ48287043
A Sliding Window-Based Method to Detect Selective Constraints in Protein-Coding Genes and Its Application to RNA VirusesQ57052341
Recombination in uveitis-causing enterovirus strainsQ57104452
Antigen chimaeras of poliovirus as potential new vaccinesQ59096919
Poliovirus antigenic hybrids simultaneously expressing antigenic determinants from all three serotypesQ67532757
On the nature of poliovirus genetic recombinantsQ68686108
Mapping of tissue tropism determinants in coxsackievirus genomesQ74327756
Identification of shared populations of human immunodeficiency virus type 1 infecting microglia and tissue macrophages outside the central nervous system.Q33850041
Molecular epidemiology and evolution of coxsackievirus A9.Q33898474
Genetic classification of "Norwalk-like viruses..Q33914454
Typing of human enteroviruses by partial sequencing of VP1.Q33960048
Intratypic recombination among lineages of type 1 vaccine-derived poliovirus emerging during chronic infection of an immunodeficient patientQ34045658
An evolutionary perspective on synonymous codon usage in unicellular organismsQ34048972
Characterization of new recombinant norovirusesQ34073563
The extent of homologous recombination in members of the genus FlavivirusQ34174187
Frequency and dynamics of recombination within different species of human enterovirusesQ34232997
Evolution of cell recognition by virusesQ34250512
Role of recombination in evolution of enterovirusesQ34373344
Will the polio niche remain vacant?Q34475064
Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region.Q34545765
Picornavirus-receptor interactionsQ34731386
Structure and receptor binding.Q35044853
Genetic, antigenic and biological differences between strains of hepatitis A virusQ35237390
Host and virus determinants of picornavirus pathogenesis and tropismQ36277182
RNA recombination plays a major role in genomic change during circulation of coxsackie B virusesQ36509864
Typing of human astroviruses from clinical isolates by enzyme immunoassay and nucleotide sequencingQ36520250
Lyophilized combination pools of enterovirus equine antisera: preparation and test procedures for the identification of field strains of 42 enterovirusesQ36786234
Construction of poliovirus intertypic recombinants by use of cDNAQ36860386
Evidence for frequent recombination within species human enterovirus B based on complete genomic sequences of all thirty-seven serotypesQ36942807
Evidence of recombination in natural populations of hepatitis A virusQ38954317
Epidemic spread of recombinant noroviruses with four capsid types in HungaryQ39131660
Molecular characterization of a novel recombinant strain of human astrovirus associated with gastroenteritis in childrenQ39591704
Porcine teschoviruses comprise at least eleven distinct serotypes: molecular and evolutionary aspectsQ39602084
Natural genetic exchanges between vaccine and wild poliovirus strains in humans.Q39612254
Tissue tropism of recombinant coxsackieviruses in an adult mouse model.Q40408708
Recombination in the genesis and evolution of hepatitis B virus genotypesQ40670343
Evidence of recombination in the capsid-coding region of type A foot-and-mouth disease virusQ40703324
Molecular analysis of the echovirus 18 prototype: evidence of interserotypic recombination with echovirus 9.Q40738055
Evidence of recombination in the norovirus capsid geneQ42651864
Detection and genetic differentiation of human astroviruses: phylogenetic grouping varies by coding regionQ42662340
Open reading frame sequence of an Asian enterovirus 73 strain reveals that the prototype from California is recombinantQ42678679
Phylogenetic analysis of GBV-C/hepatitis G virus.Q42997278
Homologous recombination in GB virus C/hepatitis G virusQ43001776
Phylogeny, genome evolution, and antigenic variability among endemic foot-and-mouth disease virus type A isolates from IndiaQ45521902
Low linkage disequilibrium indicative of recombination in foot-and-mouth disease virus gene sequence alignments.Q45649047
Genetic and antigenic analysis of two recently circulating genotypes of type A foot-and-mouth disease virus in India: evidence for positive selection in the capsid-coding genesQ45723805
P433issue22
P407language of work or nameEnglishQ1860
P921main subjectvirologyQ7215
P304page(s)11124-40
P577publication date2006-11-01
P1433published inJournal of VirologyQ1251128
P1476titleRecombination and selection in the evolution of picornaviruses and other Mammalian positive-stranded RNA viruses
P478volume80

Reverse relations

cites work (P2860)
Q27480365A Distinct Group of Hepacivirus/Pestivirus-Like Internal Ribosomal Entry Sites in Members of Diverse Picornavirus Genera: Evidence for Modular Exchange of Functional Noncoding RNA Elements by Recombination
Q47392679A G3P[13] porcine group A rotavirus emerging in China is a reassortant and a natural recombinant in the VP4 gene.
Q35689574A distinct class of internal ribosomal entry site in members of the Kobuvirus and proposed Salivirus and Paraturdivirus genera of the Picornaviridae.
Q40825247A novel multiplex one-step real-time RT-PCR assay for the simultaneous identification of enterovirus and parechovirus in clinical fecal samples
Q33644140Analysis of genetic diversity and sites of recombination in human rhinovirus species C
Q44163783Analysis of the leader proteinase (L(pro)) region of type A foot-and-mouth disease virus with due emphasis on phylogeny and evolution of the emerging VP3(59)-deletion lineage from India
Q92463421Application of a sequence-based taxonomic classification method to uncultured and unclassified marine single-stranded RNA viruses in the order Picornavirales
Q33826688Assembly and biological and immunological properties of Newcastle disease virus-like particles
Q36874351Basic rationale, current methods and future directions for molecular typing of human enterovirus
Q39848963Bioinformatics and Molecular Analysis of the Evolutionary Relationship between Bovine Rhinitis A Viruses and Foot-And-Mouth Disease Virus
Q37157202Cardioviruses are genetically diverse and cause common enteric infections in South Asian children
Q46518912Characterization of San Miguel sea lion virus populations using pyrosequencing-based methods
Q35362842Characterization of a canine homolog of human Aichivirus
Q39065462Characterization of a chimeric foot-and-mouth disease virus bearing a bovine rhinitis B virus leader proteinase
Q38796627Complete genome analysis of porcine kobuviruses from the feces of pigs in Japan
Q36246215Complete genome sequence of two coxsackievirus A1 strains that were cytotoxic to human rhabdomyosarcoma cells
Q40808711Distribution and genetic characterization of Enterovirus G and Sapelovirus A in six Spanish swine herds.
Q99365035Efficient rational modification of non-ribosomal peptides by adenylation domain substitution
Q42170563Efficient replication of recombinant Enterovirus B types, carrying different P1 genes in the coxsackievirus B5 replicative backbone
Q37947366Enteroviruses and causality of type 1 diabetes: how close are we?
Q47611736Epidemiology and molecular characterization of Porcine teschovirus in Hunan, China.
Q43575679Evidence for recombination between vaccine and wild-type mumps virus strains
Q27490998Evidence for ribosomal frameshifting and a novel overlapping gene in the genomes of insect-specific flaviviruses
Q46025240Evidences for intertypic and intratypic recombinant events in EV71 of hand, foot and mouth disease during an epidemic in Hubei Province, China, 2011.
Q35839763Evolution and Emergence of Enteroviruses through Intra- and Inter-species Recombination: Plasticity and Phenotypic Impact of Modular Genetic Exchanges in the 5' Untranslated Region.
Q33890431Expecting the unexpected: nucleic acid-based diagnosis and discovery of emerging viruses
Q33604852First identification and characterization of porcine enterovirus G in the United States
Q52589942Full Genome Sequencing Reveals New Southern African Territories Genotypes Bringing Us Closer to Understanding True Variability of Foot-and-Mouth Disease Virus in Africa.
Q33909381Genes in the terminal regions of orthopoxvirus genomes experience adaptive molecular evolution
Q91045891Genetic characterization of a novel picornavirus in Algerian bats: co-evolution analysis of bat-related picornaviruses
Q41525585Genetic characterization of human coxsackievirus A6 variants associated with atypical hand, foot and mouth disease: a potential role of recombination in emergence and pathogenicity.
Q47555232Genetic diversity and recombination of enterovirus G strains in Japanese pigs: High prevalence of strains carrying a papain-like cysteine protease sequence in the enterovirus G population
Q34024060Genetic relationship between cocirculating Human enteroviruses species C.
Q45384908Genetic structure and variability of virus populations in cross-protected grapevines superinfected by Grapevine fanleaf virus.
Q33521243Genetics, recombination and clinical features of human rhinovirus species C (HRV-C) infections; interactions of HRV-C with other respiratory viruses
Q35844207Genome-wide diversity and selective pressure in the human rhinovirus
Q42850398Genus-specific substitution rate variability among picornaviruses
Q42094831HIV integrase variability and genetic barrier in antiretroviral naïve and experienced patients.
Q30389296Heterogeneity and genetic variations of serotypes O and Asia 1 foot-and-mouth disease viruses isolated in Vietnam
Q30776351High rates of infection with novel enterovirus variants in wild populations of mandrills and other old world monkey species
Q79450580Host-related nucleotide composition and codon usage as driving forces in the recent evolution of the Astroviridae
Q37198451Human rhinoviruses: coming in from the cold
Q36502450Identification of a contemporary human parechovirus type 1 by VIDISCA and characterisation of its full genome
Q41450516Identification of an enterovirus recombinant with a torovirus-like gene insertion during a diarrhea outbreak in fattening pigs
Q39615662Identification of mixed equine rhinitis B virus infections leading to further insight on the relationship between genotype, serotype and acid stability phenotype
Q41926451Identification of potential recombination breakpoints in human parechoviruses
Q40664097Identification of recombination between Muscovy duck parvovirus and goose parvovirus structural protein genes
Q40983850Identification of recombination in the NS1 and VPs genes of parvovirus B19.
Q91742345Interbreed variation in meiotic recombination rate and distribution in the domestic chicken Gallus gallus
Q28821085Large-scale screening and characterization of enteroviruses and kobuviruses infecting pigs in Vietnam
Q41895260Mapping overlapping functional elements embedded within the protein-coding regions of RNA viruses
Q64081503Marine RNA Virus Quasispecies Are Distributed throughout the Oceans
Q33928915Molecular characterization of a novel Ljungan virus (Parechovirus; Picornaviridae) reveals a fourth genotype and indicates ancestral recombination
Q100430109Molecular characterization of the complete genome sequence of human Parechovirus 1 in Pakistan
Q45399697Mosaic amino acid conservation in 3D-structures of surface protein and polymerase of hepatitis B virus
Q30842561MosaicSolver: a tool for determining recombinants of viral genomes from pileup data
Q35005249Multiple genomic recombination events in the evolution of saffold cardiovirus
Q36342175Natural non-homologous recombination led to the emergence of a duplicated V3-NS5A region in HCV-1b strains associated with hepatocellular carcinoma
Q42053061Natural recombination event within the capsid genomic region leading to a chimeric strain of human enterovirus B
Q30444502New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features
Q37203742New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses
Q39780308Newcastle disease virus-like particles as a platform for the development of vaccines for human and agricultural pathogens
Q34026234Nonhomologous recombination between defective poliovirus and coxsackievirus genomes suggests a new model of genetic plasticity for picornaviruses
Q24497650Nucleotide composition of the Zika virus RNA genome and its codon usage
Q35826808Partitioning the genetic diversity of a virus family: approach and evaluation through a case study of picornaviruses
Q59356362Pathogenicity and cross-reactive immune responses of a historical and a contemporary Senecavirus A strains in pigs
Q43242579Phylogenetic analysis of the species Theilovirus: emerging murine and human pathogens
Q41147983Phylogenetic and recombination analysis of genomic sequences of IHHNV.
Q47833670Phylogeny and evolution of porcine teschovirus 8 isolated from pigs in China with reproductive failure
Q91862889Picornavirus RNA Recombination Counteracts Error Catastrophe
Q28539894Population structure and evolution of Rhinoviruses
Q33642991Prevalence, genetic diversity and recombination of species G enteroviruses infecting pigs in Vietnam
Q34649619Productive homologous and non-homologous recombination of hepatitis C virus in cell culture.
Q41824645Recombination analysis based on the complete genome of bocavirus
Q46262046Recombination analysis of coxsackievirus B5 genogroup C.
Q42263436Recombination and evolutionary dynamics of human echovirus 6.
Q98906694Recombination at the emergence of the pathogenic rabbit haemorrhagic disease virus Lagovirus europaeus/GI.2.
Q31034162Recombination between poliovirus and coxsackie A viruses of species C: a model of viral genetic plasticity and emergence
Q35145633Recombination in the evolution of enterovirus C species sub-group that contains types CVA-21, CVA-24, EV-C95, EV-C96 and EV-C99
Q41444113Reemergence of recombinant vaccine-derived poliovirus outbreak in Madagascar
Q38697410Retrospective genetic characterisation of Encephalomyocarditis viruses from African elephant and swine recovers two distinct lineages in South Africa
Q35558637Ribosomal frameshifting into an overlapping gene in the 2B-encoding region of the cardiovirus genome
Q28752011Rooting human parechovirus evolution in time
Q34134456SSE: a nucleotide and amino acid sequence analysis platform
Q21131579Saffold virus, a human Theiler's-like cardiovirus, is ubiquitous and causes infection early in life
Q34063613Screening of feral and wood pigeons for viruses harbouring a conserved mobile viral element: characterization of novel Astroviruses and Picornaviruses
Q37451852Screening respiratory samples for detection of human rhinoviruses (HRVs) and enteroviruses: comprehensive VP4-VP2 typing reveals high incidence and genetic diversity of HRV species C.
Q38336269Sequence analysis reveals mosaic genome of Aichi virus
Q34943950Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution
Q35826072The association of recombination events in the founding and emergence of subgenogroup evolutionary lineages of human enterovirus 71
Q34013381The fecal virome of pigs on a high-density farm.
Q28731350Toward genetics-based virus taxonomy: comparative analysis of a genetics-based classification and the taxonomy of picornaviruses
Q37099683Transmission networks and population turnover of echovirus 30
Q37355960Understanding the molecular epidemiology of foot-and-mouth-disease virus.
Q35823909Viral meningitis epidemics and a single, recent, recombinant and anthroponotic origin of swine vesicular disease virus
Q57490128Whole Genome Sequencing of Enteroviruses Species A to D by High-Throughput Sequencing: Application for Viral Mixtures
Q42036258Widely conserved recombination patterns among single-stranded DNA viruses.

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