Molecular characterization of a novel Ljungan virus (Parechovirus; Picornaviridae) reveals a fourth genotype and indicates ancestral recombination

scientific article

Molecular characterization of a novel Ljungan virus (Parechovirus; Picornaviridae) reveals a fourth genotype and indicates ancestral recombination is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1099/VIR.0.007948-0
P932PMC publication ID2889435
P698PubMed publication ID19264646
P5875ResearchGate publication ID24180497

P50authorRobert B. TeshQ24805306
P2093author name stringBjörn Andersson
A Michael Lindberg
Conny Tolf
E Susanne Johansson
Maria Gullberg
P2860cites workLikelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignmentQ24286949
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
Recombination and selection in the evolution of picornaviruses and other Mammalian positive-stranded RNA virusesQ24498230
Comparative genomics of foot-and-mouth disease virusQ24522726
Identification of an RNA hairpin in poliovirus RNA that serves as the primary template in the in vitro uridylylation of VPgQ24524070
Identification of a cis-acting replication element within the poliovirus coding regionQ24525105
The rhinovirus type 14 genome contains an internally located RNA structure that is required for viral replicationQ24539314
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structureQ24562398
Amino acid substitution matrices from protein blocksQ24563220
Analysis of a new human parechovirus allows the definition of parechovirus types and the identification of RNA structural domainsQ24675802
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0Q26778434
MODELTEST: testing the model of DNA substitutionQ26778437
A general method applicable to the search for similarities in the amino acid sequence of two proteinsQ27860563
The rapid generation of mutation data matrices from protein sequencesQ27860880
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum LikelihoodQ27861000
A new picornavirus isolated from bank voles (Clethrionomys glareolus)Q28137899
Secondary structure prediction for aligned RNA sequencesQ28206303
Dynalign: an algorithm for finding the secondary structure common to two RNA sequencesQ28208082
Association of zoonotic Ljungan virus with intrauterine fetal deathsQ28291230
Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanningQ70929876
[Genomic instability in picornaviruses]Q77989511
HyPhy: hypothesis testing using phylogeniesQ29013475
Rapid evolution of RNA genomesQ29616272
Analyzing the mosaic structure of genesQ29616749
At least six nucleotides preceding the AUG initiator codon enhance translation in mammalian cellsQ29618360
Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequencesQ33389642
ParechovirusesQ33655062
Evaluation of methods for detecting recombination from DNA sequences: computer simulationsQ33950030
Typing of human enteroviruses by partial sequencing of VP1.Q33960048
Isolation and identification of a novel human parechovirusQ34295541
Molecular analysis of three Ljungan virus isolates reveals a new, close-to-root lineage of the Picornaviridae with a cluster of two unrelated 2A proteinsQ34363105
Predicting a set of minimal free energy RNA secondary structures common to two sequencesQ34397686
Potential secondary and tertiary structure in the genomic RNA of foot and mouth disease virusQ34704738
Conserved tertiary structural elements in the 5' nontranslated region of cardiovirus, aphthovirus and hepatitis A virus RNAsQ34983776
Fourth human parechovirus serotypeQ35792120
Human parechovirus 3 and neonatal infectionsQ35804383
An exact nonparametric method for inferring mosaic structure in sequence tripletsQ35846218
The 3' untranslated region of picornavirus RNA: features required for efficient genome replication.Q35852312
Cleavage site analysis in picornaviral polyproteins: discovering cellular targets by neural networksQ36279534
Expression of virus-encoded proteinases: functional and structural similarities with cellular enzymesQ37059742
Could myocarditis, insulin-dependent diabetes mellitus, and Guillain-Barré syndrome be caused by one or more infectious agents carried by rodents?Q37092370
Isolation and characterization of novel human parechovirus from clinical samplesQ37473673
Proteolytic processing of picornaviral polyproteinQ38004542
Genetic and biochemical studies of poliovirus cis-acting replication element cre in relation to VPg uridylylationQ39585311
Replication of Ljungan virus in cell culture: the genomic 5'-end, infectious cDNA clones and host cell response to viral infectionsQ40103569
Conservation of the secondary structure elements of the 5'-untranslated region of cardio- and aphthovirus RNAsQ40451893
Molecular analysis of the echovirus 18 prototype: evidence of interserotypic recombination with echovirus 9.Q40738055
Structural determinants of insert retention of poliovirus expression vectors with recombinant IRES elementsQ42602944
Cell culture propagation and biochemical analysis of the Ljungan virus prototype strainQ42829680
Structure and function analysis of the poliovirus cis-acting replication element (CRE).Q43207031
Tracing the origin and co-phylogeny of the calicivirusesQ43220335
Molecular characterization of a Canadian human parechovirus (HPeV)-3 isolate and its relationship to other HPeVsQ43660539
Phylogenetic analysis of Ljungan virus and A-2 plaque virus, new members of the PicornaviridaeQ45163602
Characterization of polyclonal antibodies against the capsid proteins of Ljungan virusQ45395897
Physicochemical properties of the Ljungan virus prototype virion in different environments: inactivated by heat but resistant to acidic pH, detergents and non-physiological environments such as Virkon-containing solutionsQ45399948
Molecular characterization of M1146, an American isolate of Ljungan virus (LV) reveals the presence of a new LV genotypeQ45728620
Widespread recombination within human parechoviruses: analysis of temporal dynamics and constraintsQ46611378
RDP: detection of recombination amongst aligned sequencesQ46776083
Molecular analysis of human parechovirus type 2 (formerly echovirus 23).Q48007523
Evolution of the genome of Human enterovirus B: incongruence between phylogenies of the VP1 and 3CD regions indicates frequent recombination within the speciesQ48251272
RnaViz 2: an improved representation of RNA secondary structure.Q48263846
Two viruses isolated from rodents (Clethrionomys gapperi and Microtus pennsvlvanicus) trapped in St. Lawrence County, New York.Q52665333
A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination BreakpointsQ56878359
P433issuePt 4
P407language of work or nameEnglishQ1860
P921main subjectPicornavirusQ936600
Ljungan virusQ1441063
P304page(s)843-853
P577publication date2009-03-04
P1433published inJournal of General VirologyQ6295245
P1476titleMolecular characterization of a novel Ljungan virus (Parechovirus; Picornaviridae) reveals a fourth genotype and indicates ancestral recombination
P478volume90

Reverse relations

cites work (P2860)
Q34567502Detection of novel viruses in porcine fecal samples from China
Q33455307Development of hyperglycemia and diabetes in captive Polish bank voles
Q38383971Evaluation of the association of zoonotic Ljungan virus with perinatal deaths and fetal malformation
Q42283865Evidence of Ljungan virus specific antibodies in humans and rodents, Finland
Q99413877Extending the Enterovirus Lead: Could a Related Picornavirus be Responsible for Diabetes in Humans?
Q61445039Gut Virome Analysis of Cameroonians Reveals High Diversity of Enteric Viruses, Including Potential Interspecies Transmitted Viruses
Q28661624Human parechovirus genotypes -10, -13 and -15 in Pakistani children with acute dehydrating gastroenteritis
Q28290447Ljungan virus is endemic in rodents in the UK
Q37796710Ljungan virus: A commentary on its association with fetal and infant morbidity and mortality in animals and humans
Q40134347Serological survey in the Finnish human population implies human-to-human transmission of Ljungan virus or antigenically related viruses
Q27322662Structure of Ljungan virus provides insight into genome packaging of this picornavirus.

Search more.