| scholarly article | Q13442814 |
| P356 | DOI | 10.1089/AID.2005.21.98 |
| P698 | PubMed publication ID | 15665649 |
| P50 | author | David Posada | Q30512250 |
| Keith A. Crandall | Q42212481 | ||
| P2093 | author name string | C. Williamson | |
| D.P. Martin | |||
| P433 | issue | 1 | |
| P921 | main subject | immunology | Q101929 |
| virology | Q7215 | ||
| infectious disease | Q18123741 | ||
| automation | Q184199 | ||
| P304 | page(s) | 98-102 | |
| P577 | publication date | 2005-01-01 | |
| P1433 | published in | AIDS Research and Human Retroviruses | Q4651880 |
| P1476 | title | A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints | |
| P478 | volume | 21 |
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| Q36396698 | Phylogenetic analysis and polyphasic characterization of Clavibacter michiganensis strains isolated from tomato seeds reveal that nonpathogenic strains are distinct from C. michiganensis subsp. michiganensis |
| Q42255557 | Phylogenetic analysis of New Zealand tomato spotted wilt virus isolates suggests likely incursion history scenarios and mechanisms for population evolution |
| Q33326191 | Phylogenetic and evolutionary analyses of St. Louis encephalitis virus genomes |
| Q96124286 | Phylogenetic and recombinant analyses of complete coding sequences of DENV-1 from field-caught mosquitoes in Thailand |
| Q35069391 | Phylogenetic relatedness of circulating HIV-1C variants in Mochudi, Botswana |
| Q28647303 | Phylogenomic analysis reveals deep divergence and recombination in an economically important grapevine virus |
| Q54553586 | Phylogeny and historical biogeography of the cocosoid palms (Arecaceae, Arecoideae, Cocoseae) inferred from sequences of six WRKY gene family loci |
| Q42207084 | Phylogeny of beak and feather disease virus in cockatoos demonstrates host generalism and multiple-variant infections within Psittaciformes. |
| Q118163206 | Phylogeny of cercosporoid fungi (Mycosphaerellaceae, Mycosphaerellales) from Hawaii and New York reveals novel species within the Cercospora beticola complex |
| Q46899490 | Phylogeny of the Centaurea group (Centaurea, Compositae) - geography is a better predictor than morphology |
| Q92106364 | Phylogeographic Analyses Reveal the Early Expansion and Frequent Bidirectional Cross-Border Transmissions of Non-pandemic HIV-1 Subtype B Strains in Hispaniola |
| Q34489663 | Phylogeographic characterization of tick-borne encephalitis virus from patients, rodents and ticks in Slovenia |
| Q34630481 | Phylogeographic reconstruction of African yellow fever virus isolates indicates recent simultaneous dispersal into east and west Africa |
| Q34979918 | Phylogeography of Japanese encephalitis virus: genotype is associated with climate |
| Q37610071 | Polymorphism in the major histocompatibility complex (MHC class II B) genes of the Rufous-backed Bunting (Emberiza jankowskii) |
| Q90098391 | Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination |
| Q40106401 | Population genomics of dengue virus serotype 4: insights into genetic structure and evolution |
| Q99411825 | Population genomics of louping ill virus provide new insights into the evolution of tick-borne flaviviruses |
| Q28539894 | Population structure and evolution of Rhinoviruses |
| Q45325381 | Porcine reproductive and respiratory disease virus: Evolution and recombination yields distinct ORF5 RFLP 1-7-4 viruses with individual pathogenicity |
| Q39547986 | Positive selection, molecular recombination structure and phylogenetic reconstruction of members of the family Tombusviridae: Implication in virus taxonomy |
| Q90319310 | Potato virus Y; the Andean connection |
| Q92710271 | Prevalence and population genetics of the emerging honey bee pathogen DWV in Chinese apiculture |
| Q39418328 | Proposals for the classification of human rhinovirus species A, B and C into genotypically assigned types |
| Q42735129 | Protein phosphatase 2B (PP2B, calcineurin) in Paramecium: partial characterization reveals that two members of the unusually large catalytic subunit family have distinct roles in calcium-dependent processes |
| Q29617754 | RDP3: a flexible and fast computer program for analyzing recombination |
| Q35921886 | RV-Typer: A Web Server for Typing of Rhinoviruses Using Alignment-Free Approach |
| Q40084677 | Ranavirus phylogenomics: Signatures of recombination and inversions among bullfrog ranaculture isolates |
| Q28709654 | Rapid birth-and-death evolution of the xenobiotic metabolizing NAT gene family in vertebrates with evidence of adaptive selection |
| Q35758685 | Recombination Analysis of Herpes Simplex Virus 1 Reveals a Bias toward GC Content and the Inverted Repeat Regions |
| Q41824645 | Recombination analysis based on the complete genome of bocavirus |
| Q33981030 | Recombination analysis reveals a double recombination event in hepatitis E virus |
| Q42642664 | Recombination and phylogeographical analysis of Lily symptomless virus |
| Q27490183 | Recombination in West Nile Virus: minimal contribution to genomic diversity |
| Q38633578 | Recombination in avian gamma-coronavirus infectious bronchitis virus |
| Q34388296 | Recombination in hepatitis C virus: identification of four novel naturally occurring inter-subtype recombinants |
| Q50457176 | Recombination in mitochondrial DNA of European mussels Mytilus. |
| Q48040668 | Recombination in the evolution of human rhinovirus genomes |
| Q35244630 | Recombination pattern reanalysis of some HIV-1 circulating recombination forms suggest the necessity and difficulty of revision |
| Q35140047 | Recombination patterns in aphthoviruses mirror those found in other picornaviruses |
| Q51602132 | Recombination patterns in dicot-infecting mastreviruses mirror those found in monocot-infecting mastreviruses. |
| Q101051253 | Recombination shapes African swine fever virus serotype-specific locus evolution |
| Q48070925 | Recombination structure and genetic relatedness among members of the family Bromoviridae based on their RNAs 1 and 2 sequence analyses |
| Q33364361 | Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen. |
| Q45381618 | Recombination, selection and clock-like evolution of Rice yellow mottle virus |
| Q35192759 | Reconstructing the history of maize streak virus strain a dispersal to reveal diversification hot spots and its origin in southern Africa |
| Q33301052 | Recurrent adenylation domain replacement in the microcystin synthetase gene cluster. |
| Q99238036 | Representative Genotyping, Recombination and Evolutionary Dynamics Analysis of TSA56 Gene Segment of Orientia tsutsugamushi |
| Q51617676 | Reproductive compensation favours male-killing Wolbachia in a live-bearing host. |
| Q40618172 | Resolving Bovine viral diarrhea virus subtypes from persistently infected U.S. beef calves with complete genome sequence. |
| Q58556743 | Resolving the Speciation Patterns and Evolutionary History of the Intercontinental Disjunct Genus (Betulaceae) Using Genome-Wide SNPs |
| Q38398452 | Restriction of V3 region sequence divergence in the HIV-1 envelope gene during antiretroviral treatment in a cohort of recent seroconverters |
| Q30742117 | Revisiting the classification of curtoviruses based on genome-wide pairwise identity. |
| Q42133208 | Revisiting the evolution of mouse LINE-1 in the genomic era. |
| Q41406503 | Rice yellow mottle virus in Madagascar and in the Zanzibar Archipelago; island systems and evolutionary time scale to study virus emergence |
| Q38336269 | Sequence analysis reveals mosaic genome of Aichi virus |
| Q83992812 | Sequencing of a porcine enterovirus strain prevalent in swine groups in China and recombination analysis |
| Q38636491 | Sliding MinPD: building evolutionary networks of serial samples via an automated recombination detection approach |
| Q43718417 | Sorting through the chaff, nDNA gene trees for phylogenetic inference and hybrid identification of annual sunflowers (Helianthus sect. Helianthus). |
| Q34785251 | Spatiotemporal Phylogenetic Analysis and Molecular Characterisation of Infectious Bursal Disease Viruses Based on the VP2 Hyper-Variable Region. |
| Q35229850 | Split personality of a Potyvirus: to specialize or not to specialize? |
| Q42090048 | Statistical Analysis on Detecting Recombination Sites in DNA-β Satellites Associated with Old World Geminiviruses |
| Q21090632 | Stereopsidales--a new order of mushroom-forming fungi |
| Q42430250 | Strong purifying selection in endogenous retroviruses in the saltwater crocodile (Crocodylus porosus) in the Northern Territory of Australia. |
| Q36246584 | Structure and evolution of the filaggrin gene repeated region in primates |
| Q34416221 | Surveillance and genome analysis of human bocavirus in patients with respiratory infection in Guangzhou, China |
| Q61811382 | Tandem gene duplication and recombination at the AT3 locus in the Solanaceae, a gene essential for capsaicinoid biosynthesis in Capsicum |
| Q36694008 | The P1N-PISPO trans-Frame Gene of Sweet Potato Feathery Mottle Potyvirus Is Produced during Virus Infection and Functions as an RNA Silencing Suppressor |
| Q37231891 | The Subtelomeric khipu Satellite Repeat from Phaseolus vulgaris: Lessons Learned from the Genome Analysis of the Andean Genotype G19833. |
| Q42278265 | The complete genome sequence of a south Indian isolate of Rice tungro spherical virus reveals evidence of genetic recombination between distinct isolates |
| Q40893557 | The complete genome sequences of two naturally occurring recombinant isolates of Sugarcane mosaic virus from Iran. |
| Q42016994 | The complete genomic sequence of pepper yellow leaf curl virus (PYLCV) and its implications for our understanding of evolution dynamics in the genus polerovirus |
| Q46738351 | The effects of recombination, mutation and selection on the evolution of the Rp1 resistance genes in grasses |
| Q45375485 | The evolutionary dynamics of bluetongue virus |
| Q24814667 | The evolutionary value of recombination is constrained by genome modularity |
| Q34101855 | The genetic ghost of an invasion past: colonization and extinction revealed by historical hybridization in Senecio |
| Q36172667 | The global distribution of Banana bunchy top virus reveals little evidence for frequent recent, human-mediated long distance dispersal events |
| Q51450453 | The global spread of Middle East respiratory syndrome: an analysis fusing traditional epidemiological tracing and molecular phylodynamics. |
| Q46887599 | The impact of intragenic recombination on phylogenetic reconstruction at the sectional level in Eucalyptus when using a single copy nuclear gene (cinnamoyl CoA reductase). |
| Q33390848 | The phylogenetics of the global population of potato virus Y and its necrogenic recombinants |
| Q34505670 | The recent recombinant evolution of a major crop pathogen, potato virus Y |
| Q27312789 | The spread of tomato yellow leaf curl virus from the Middle East to the world |
| Q55249486 | The substitution rate of HIV-1 subtypes: a genomic approach. |
| Q41441544 | The tale of a modern animal plague: tracing the evolutionary history and determining the time-scale for foot and mouth disease virus |
| Q28538795 | Tollip or not Tollip: what are the evolving questions behind it? |
| Q34381097 | Topology of viral evolution |
| Q43336217 | Tripping over emerging pathogens around the world: a phylogeographical approach for determining the epidemiology of Porcine circovirus-2 (PCV-2), considering global trading. |
| Q30421453 | Universal amplification, next-generation sequencing, and assembly of HIV-1 genomes |
| Q31124607 | Using the putative asexual fungus Cenococcum geophilum as a model to test how species concepts influence recombination analyses using sequence data from multiple loci |
| Q93007274 | Virus Discovery in Desert Tortoise Fecal Samples: Novel Circular Single-Stranded DNA Viruses |
| Q40167648 | Whole genome analysis of Japanese bovine toroviruses reveals natural recombination between porcine and bovine toroviruses |
| Q36098163 | Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity |
| Q37418111 | Whole genome sequencing and de novo assembly identifies Sydney-like variant noroviruses and recombinants during the winter 2012/2013 outbreak in England |
| Q42231121 | Whole genomic characterization of a Korean human parechovirus type 1 (HPeV1) identifies recombination events |
| Q38866018 | Whole-genome sequencing of Theileria parva strains provides insight into parasite migration and diversification in the African continent. |
| Q42036258 | Widely conserved recombination patterns among single-stranded DNA viruses. |
| Q40074299 | Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors |
| Q39741814 | Zucchini shoestring virus: a distinct potyvirus in the papaya ringspot virus cluster. |
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