FunRich: An open access standalone functional enrichment and interaction network analysis tool

scientific article

FunRich: An open access standalone functional enrichment and interaction network analysis tool is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1002/PMIC.201400515
P3181OpenCitations bibliographic resource ID606981
P698PubMed publication ID25921073
P5875ResearchGate publication ID275662431

P50authorShivakumar KeerthikumarQ56438535
Agus SalimQ60659186
John M MariadasonQ60960610
Camelia QuekQ86686049
Mohashin PathanQ88541894
Antony W BurgessQ104617983
Dmitri MouradovQ117276566
Andrew F. HillQ37373772
Michael T RyanQ37381043
Oliver SieberQ38319243
Ching-Seng AngQ39061637
Nicholas A. WilliamsonQ40376378
Tony BacicQ43095268
Suresh MathivananQ43238457
David A. StroudQ45365808
Richard SimpsonQ48156306
Lahiru GangodaQ55302331
P2093author name stringJohnson I Agbinya
P2860cites workSystematic and integrative analysis of large gene lists using DAVID bioinformatics resourcesQ27860739
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene listsQ28131785
A travel guide to Cytoscape pluginsQ29788355
The model organism as a system: integrating 'omics' data setsQ31032864
Comparing gene annotation enrichment tools for functional modeling of agricultural microarray dataQ33509224
Visualization of omics data for systems biologyQ33535721
Onto-Tools: new additions and improvements in 2006.Q38515972
P433issue15
P407language of work or nameEnglishQ1860
P921main subjectopen accessQ232932
P304page(s)2597-2601
P577publication date2015-06-17
P1433published inProteomicsQ15614164
P1476titleFunRich: An open access standalone functional enrichment and interaction network analysis tool
P478volume15

Reverse relations

cites work (P2860)
Q47276840A Genome-Wide Association Study and Complex Network Identify Four Core Hub Genes in Bipolar Disorder
Q58781342A New Machine Learning-Based Framework for Mapping Uncertainty Analysis in RNA-Seq Read Alignment and Gene Expression Estimation
Q58782981A Swath Label-Free Proteomics insight into the Faah Mouse Liver
Q91441682A comprehensive proteomics analysis of JC virus Agnoprotein-interacting proteins: Agnoprotein primarily targets the host proteins with coiled-coil motifs
Q90057033A novel CRISPR-engineered prostate cancer cell line defines the AR-V transcriptome and identifies PARP inhibitor sensitivities
Q33893273A novel community driven software for functional enrichment analysis of extracellular vesicles data.
Q30279187A novel mechanism of generating extracellular vesicles during apoptosis via a beads-on-a-string membrane structure
Q41167428A rigorous method to enrich for exosomes from brain tissue
Q64076751A systematic simulation-based meta-analytical framework for prediction of physiological biomarkers in alopecia
Q92450454A targeted proteomics approach reveals a serum protein signature as diagnostic biomarker for resectable gastric cancer
Q64069314ALK4/5-dependent TGF-β signaling contributes to the crosstalk between neurons and microglia following axonal lesion
Q89001809Agrin has a pathological role in the progression of oral cancer
Q58740511Alternative splicing links histone modifications to stem cell fate decision
Q92422125An Insight into the Proteome of Uveal Melanoma-Derived Ectosomes Reveals the Presence of Potentially Useful Biomarkers
Q95840672An Integrative Pharmacology-Based Analysis of Refined Qingkailing Injection Against Cerebral Ischemic Stroke: A Novel Combination of Baicalin, Geniposide, Cholic Acid, and Hyodeoxycholic Acid
Q89078262An optimized method for enrichment of whole brain-derived extracellular vesicles reveals insight into neurodegenerative processes in a mouse model of Alzheimer's disease
Q64948614Analysis of cyclin E co-expression genes reveals nuclear transcription factor Y subunit alpha is an oncogene in gastric cancer.
Q38429221Analysis of temporal expression profiles after sciatic nerve injury by bioinformatic method
Q89713392Aneuploid IMR90 cells induced by depletion of pRB, DNMT1 and MAD2 show a common gene expression signature
Q94503649Angiogenic Potential of Tissue Engineered Cartilage From Human Mesenchymal Stem Cells Is Modulated by Indian Hedgehog and Serpin E1
Q42285856Ascorbate peroxidase proximity labeling coupled with biochemical fractionation identifies promoters of endoplasmic reticulum-mitochondrial contacts
Q58578626Baicalin induces apoptosis in SW480 cells through downregulation of the SP1 transcription factor
Q92663165Beneficial Effects of Bariatric Surgery-Induced by Weight Loss on the Proteome of Abdominal Subcutaneous Adipose Tissue
Q90278439Bioinformatic analysis of microRNA expression in Huntington's disease
Q24570070Bioinformatic analysis reveals the expression of unique transcriptomic signatures in Zika virus infected human neural stem cells
Q50068060Bioinformatic identification of chemoresistance-associated microRNAs in breast cancer based on microarray data
Q90734019Bioinformatics Analysis of Genes and Pathways of CD11b+/Ly6Cintermediate Macrophages after Renal Ischemia-Reperfusion Injury
Q64235666Bioinformatics Analysis of Key Genes and Pathways for Medulloblastoma as a Therapeutic Target
Q31148967Bioinformatics Methods to Deduce Biological Interpretation from Proteomics Data.
Q38702843Bioinformatics and in vitro experimental analyses identify the selective therapeutic potential of interferon gamma and apigenin against cervical squamous cell carcinoma and adenocarcinoma
Q92208528Bioinformatics identification of microRNAs involved in polycystic ovary syndrome based on microarray data
Q91756239Bioinformatics prediction and analysis of hub genes and pathways of three types of gynecological cancer
Q48162551Biologically active constituents of the secretome of human W8B2+ cardiac stem cells.
Q33918426Bovine milk-derived exosomes from colostrum are enriched with proteins implicated in immune response and growth.
Q41594978Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimer's disease with cerebrovascular disease
Q58716665COL1A1: A potential therapeutic target for colorectal cancer expressing wild-type or mutant KRAS
Q92152473Cardiac Extracellular Vesicles (EVs) Released in the Presence or Absence of Inflammatory Cues Support Angiogenesis in Different Manners
Q64008486Cationic gold nanoparticles elicit mitochondrial dysfunction: a multi-omics study
Q37604341Cellular Signaling Pathways in Insulin Resistance-Systems Biology Analyses of Microarray Dataset Reveals New Drug Target Gene Signatures of Type 2 Diabetes Mellitus
Q90634113Cellular processes involved in lung cancer cells exposed to direct current electric field
Q55516345Characterization of Plasmodium vivax Proteins in Plasma-Derived Exosomes From Malaria-Infected Liver-Chimeric Humanized Mice.
Q99565667Characterization of brain-derived extracellular vesicles reveals changes in cellular origin after stroke and enrichment of the prion protein with a potential role in cellular uptake
Q92100498Characterization of protein, long noncoding RNA and microRNA signatures in extracellular vesicles derived from resting and degranulated mast cells
Q38694715Chronic Cigarette Smoke Mediated Global Changes in Lung Mucoepidermoid Cells: A Phosphoproteomic Analysis
Q64238225Circulating proteomic panels for diagnosis and risk stratification of acute-on-chronic liver failure in patients with viral hepatitis B
Q52608491Clinical value and potential pathways of miR-183-5p in bladder cancer: A study based on miRNA-seq data and bioinformatics analysis.
Q91932952Clinicohistopathological implications of MMP/VEGF expression in retinoblastoma: a combined meta-analysis and bioinformatics analysis
Q92107810Co-Expression Network Analysis Identified Gene Signatures in Osteosarcoma as a Predictive Tool for Lung Metastasis and Survival
Q36434622Colorectal cancer atlas: An integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tissues.
Q60045097ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases
Q64946423Comparative proteomics of soluble factors secreted by human breast adipose tissue from tumor and normal breast.
Q64253022Comparison of the Transcriptomes and Proteomes of Serum Exosomes from Marek's Disease Virus-Vaccinated and Protected and Lymphoma-Bearing Chickens
Q39416049Comprehensive Proteomic Analysis of Human Milk-derived Extracellular Vesicles Unveils a Novel Functional Proteome Distinct from Other Milk Components
Q89463183Comprehensive analysis of inhibitor of differentiation/DNA-binding gene family in lung cancer using bioinformatics methods
Q91785632Comprehensive genomic and prognostic analysis of the IL‑17 family genes in lung cancer
Q90134438Comprehensive proteomic profiling of plasma-derived Extracellular Vesicles from dementia with Lewy Bodies patients
Q42702374Comprehensive proteomics analysis of exosomes derived from human seminal plasma
Q64113575Construction and analysis of a spinal cord injury competitive endogenous RNA network based on the expression data of long noncoding, micro‑ and messenger RNAs
Q40980101Contribution of neuroblastoma-derived exosomes to the production of pro-tumorigenic signals by bone marrow mesenchymal stromal cells
Q55364113Crosstalk between Hedgehog pathway and energy pathways in human adipose-derived stem cells: A deep sequencing analysis of polysome-associated RNA.
Q42777671Data Analysis Pipeline for RNA-seq Experiments: From Differential Expression to Cryptic Splicing.
Q61795959Dataset on fat body proteome of Liston
Q98944963Deciphering the secretome of leukocyte-platelet rich fibrin: towards a better understanding of its wound healing properties
Q61797905Deduction of Novel Genes Potentially Involved in Keratinocytes of Type 2 Diabetes Using Next-Generation Sequencing and Bioinformatics Approaches
Q60045517Deep sequencing of circulating exosomal microRNA allows non-invasive glioblastoma diagnosis
Q55006413Detection of HIV-1 and Human Proteins in Urinary Extracellular Vesicles from HIV+ Patients.
Q90620481Different expression pattern of flowering pathway genes contribute to male or female organ development during floral transition in the monoecious weed Ambrosia artemisiifolia L. (Asteraceae)
Q92835186Downregulation of LINC01140 is associated with adverse features of breast cancer
Q90277712Downregulation of miR‑486‑5p in papillary thyroid carcinoma tissue: A study based on microarray and miRNA sequencing
Q91940719Dysregulated Lipid Transport Proteins Correlate With Pathogenesis and Outcome in Severe Alcoholic Hepatitis
Q96133512Dysregulated epidermal growth factor and tumor growth factor-beta receptor signaling through GFAP-ACTA2 protein interaction in liver fibrosis
Q36321888EXPath tool-a system for comprehensively analyzing regulatory pathways and coexpression networks from high-throughput transcriptome data
Q50422373Early Presymptomatic Changes in the Proteome of Mitochondria-Associated Membrane in the APP/PS1 Mouse Model of Alzheimer's Disease.
Q92483675Electrical stimulation shifts healing/scarring towards regeneration in a rat limb amputation model
Q55417580Enrichment of extracellular vesicles from human synovial fluid using size exclusion chromatography.
Q36929604Enrichment of extracellular vesicles from tissues of the central nervous system by PROSPR
Q41709447Evaluation of autoantibody signatures in meningioma patients using human proteome arrays
Q58576429Examination of the expression and prognostic significance of DLGAPs in gastric cancer using the TCGA database and bioinformatic analysis
Q38849311ExoCarta: A Web-Based Compendium of Exosomal Cargo
Q37737582Exosome and Microvesicle-Enriched Fractions Isolated from Mesenchymal Stem Cells by Gradient Separation Showed Different Molecular Signatures and Functions on Renal Tubular Epithelial Cells
Q48094977Exosomes as secondary inductive signals involved in kidney organogenesis
Q64055615Exosomes from N-Myc amplified neuroblastoma cells induce migration and confer chemoresistance to non-N-Myc amplified cells: implications of intra-tumour heterogeneity
Q90496592Expression and gene regulation network of INHBA in Head and neck squamous cell carcinoma based on data mining
Q58730181Expression of the OAS Gene Family Is Highly Modulated in Subjects Affected by Juvenile Dermatomyositis, Resembling an Immune Response to a dsRNA Virus Infection
Q64979510Extracellular Vesicle Integrins Distinguish Unique Cancers.
Q89782468Extracellular Vesicle microRNAs Contribute to the Osteogenic Inhibition of Mesenchymal Stem Cells in Multiple Myeloma
Q57798723Extracellular Vesicles Released by Glioblastoma Cells Stimulate Normal Astrocytes to Acquire a Tumor-Supportive Phenotype Via p53 and MYC Signaling Pathways
Q36106782Extracellular vesicles are rapidly purified from human plasma by PRotein Organic Solvent PRecipitation (PROSPR).
Q99565663Extracellular vesicles from human iPSC-derived neural stem cells: miRNA and protein signatures, and anti-inflammatory and neurogenic properties
Q37536641Extracellular vesicles secreted by highly metastatic clonal variants of osteosarcoma preferentially localize to the lungs and induce metastatic behaviour in poorly metastatic clones.
Q55340407Extracellular vesicles with altered tetraspanin CD9 and CD151 levels confer increased prostate cell motility and invasion.
Q58606161Farnesyl diphosphate synthase is important for the maintenance of glioblastoma stemness
Q40980080Feasibility of urinary extracellular vesicle proteome profiling using a robust and simple, clinically applicable isolation method
Q33879028From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web-resources for mass spectral plant metabolomics
Q30488107FunRich proteomics software analysis, let the fun begin!
Q89866117Functional omics analyses reveal only minor effects of microRNAs on human somatic stem cell differentiation
Q90724463Gene Expression Profiling of the Extracellular Matrix Signature in Macrophages of Different Activation Status: Relevance for Skin Wound Healing
Q93106633Gene Regulatory Networks in Peripheral Mononuclear Cells Reveals Critical Regulatory Modules and Regulators of Multiple Sclerosis
Q52367727Gene expression in retinal ischemic post-conditioning.
Q58612680Gene expression profiles analysis identifies a novel two-gene signature to predict overall survival in diffuse large B cell lymphoma
Q34540109GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
Q64361136Genetic, Transcriptome, Proteomic, and Epidemiological Evidence for Blood-Brain Barrier Disruption and Polymicrobial Brain Invasion as Determinant Factors in Alzheimer's Disease
Q96306153Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach
Q31144431Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences
Q64927023Genome-Wide Signatures of Selection Reveal Genes Associated With Performance in American Quarter Horse Subpopulations.
Q36705896Glioma-derived extracellular vesicles selectively suppress immune responses
Q39143849Glycosaminoglycanomics: where we are.
Q92734967HSP90/AXL/eIF4E-regulated unfolded protein response as an acquired vulnerability in drug-resistant KRAS-mutant lung cancer
Q64115315Hepatic protein Carbonylation profiles induced by lipid accumulation and oxidative stress for investigating cellular response to non-alcoholic fatty liver disease in vitro
Q99629827High CENPM mRNA expression and its prognostic significance in hepatocellular carcinoma: a study based on data mining
Q90324959High-glucose-induced changes in macrophage secretome: regulation of immune response
Q37722101High-throughput sequencing of two populations of extracellular vesicles provides an mRNA signature that can be detected in the circulation of breast cancer patients
Q55396138Host Interaction Analysis of PA-N155 and PA-N182 in Chicken Cells Reveals an Essential Role of UBA52 for Replication of H5N1 Avian Influenza Virus.
Q64949959Hsa_circ_0001946 Inhibits Lung Cancer Progression and Mediates Cisplatin Sensitivity in Non-small Cell Lung Cancer via the Nucleotide Excision Repair Signaling Pathway.
Q90392265Human leukemia cells (HL-60) proteomic and biological signatures underpinning cryo-damage are differentially modulated by novel cryo-additives
Q57173176Identification and functional analysis of differentially expressed genes associated with cerebral ischemia/reperfusion injury through bioinformatics methods
Q90171559Identification of Aloperine as an anti-apoptotic Bcl2 protein inhibitor in glioma cells
Q55252749Identification of PGAM1 as a putative therapeutic target for pancreatic ductal adenocarcinoma metastasis using quantitative proteomics.
Q38692091Identification of Putative Transmembrane Proteins Involved in Salinity Tolerance in Chenopodium quinoa by Integrating Physiological Data, RNAseq, and SNP Analyses
Q50351898Identification of Shared Molecular Signatures Indicate the Susceptibility of Endometriosis to Multiple Sclerosis.
Q89996530Identification of Transcriptional Markers and microRNA-mRNA Regulatory Networks in Colon Cancer by Integrative Analysis of mRNA and microRNA Expression Profiles in Colon Tumor Stroma
Q90322017Identification of aberrantly methylated differentially expressed genes and associated pathways in endometrial cancer using integrated bioinformatic analysis
Q92891505Identification of aberrantly methylated‑differentially expressed genes and gene ontology in prostate cancer
Q99357376Identification of angiotensin-converting enzyme 2 (ACE2) protein as the potential biomarker in SARS-CoV-2 infection-related lung cancer using computational analysis
Q92504832Identification of biological pathways and genes associated with neurogenic heterotopic ossification by text mining
Q64955041Identification of core genes and clinical roles in pregnancy-associated breast cancer based on integrated analysis of different microarray profile datasets.
Q41858931Identification of genes and pathways in nasopharyngeal carcinoma by bioinformatics analysis
Q64276181Identification of hub genes and therapeutic drugs in esophageal squamous cell carcinoma based on integrated bioinformatics strategy
Q52726915Identification of key differentially expressed genes associated with non‑small cell lung cancer by bioinformatics analyses.
Q64229250Identification of key genes and pathways involved in microsatellite instability in colorectal cancer
Q91755842Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma
Q64966722Identification of potential target genes in pancreatic ductal adenocarcinoma by bioinformatics analysis.
Q91584557Identification of the lncRNA-miRNA-mRNA network associated with gastric cancer via integrated bioinformatics analysis
Q92619678Identifying TF-miRNA-mRNA regulatory modules in nitidine chloride treated HCC xenograft of nude mice
Q36180739In Silico Analysis Validates Proteomic Findings of Formalin-fixed Paraffin Embedded Cutaneous Squamous Cell Carcinoma Tissue
Q64121946In Systemic Sclerosis, a Unique Long Non Coding RNA Regulates Genes and Pathways Involved in the Three Main Features of the Disease (Vasculopathy, Fibrosis and Autoimmunity) and in Carcinogenesis
Q99565625Influence of species and processing parameters on recovery and content of brain tissue-derived extracellular vesicles
Q90633526Inhibitors of Na+/K+ ATPase exhibit antitumor effects on multicellular tumor spheroids of hepatocellular carcinoma
Q47902723Insulin Mediated Activation of PI3K/Akt Signalling Pathway Modifies the Proteomic Cargo of Extracellular Vesicles.
Q55403103Integrated Multi-Omic Analysis of Mycobacterium tuberculosis H37Ra Redefines Virulence Attributes.
Q36304737Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice.
Q64077853Integrated transcriptome and in vitro analysis revealed anti-proliferative effect of citral in human stomach cancer through apoptosis
Q47160977Integrative Analysis to Identify Common Genetic Markers of Metabolic Syndrome, Dementia, and Diabetes.
Q38663596Intra-articular Injection of a Substance P Inhibitor Affects Gene Expression in a Joint Contracture Model.
Q51758043Involvement of serum-derived exosomes of elderly patients with bone loss in failure of bone remodeling via alteration of exosomal bone-related proteins.
Q52641460Key genes and regulatory networks involved in the initiation, progression and invasion of colorectal cancer.
Q51263359Label-Based and Label-Free Strategies for Protein Quantitation.
Q64991376Laser Capture Microdissection and RNA-Seq Analysis: High Sensitivity Approaches to Explain Histopathological Heterogeneity in Human Glioblastoma FFPE Archived Tissues.
Q47933271Lipidomic and proteomic analysis of exosomes from mouse cortical collecting duct cells
Q64119744Liquid Biopsies in Lung Cancer: Four Emerging Technologies and Potential Clinical Applications
Q90642695LncRNAs Predicted to Interfere With the Gene Regulation Activity of miR-637 and miR-196a-5p in GBM
Q93079977Long Non-Coding RNAs Modulate Sjögren's Syndrome Associated Gene Expression and Are Involved in the Pathogenesis of the Disease
Q90650207Long Non-Coding RNAs Play a Role in the Pathogenesis of Psoriatic Arthritis by Regulating MicroRNAs and Genes Involved in Inflammation and Metabolic Syndrome
Q92421981Long Non-Coding RNAs Target Pathogenetically Relevant Genes and Pathways in Rheumatoid Arthritis
Q38431483Long-Term Cigarette Smoke Exposure and Changes in MiRNA Expression and Proteome in Non-Small-Cell Lung Cancer.
Q95265925MCM2 and NUSAP1 Are Potential Biomarkers for the Diagnosis and Prognosis of Pancreatic Cancer
Q90652641Matrix Signaling Subsequent to a Myocardial Infarction: A Proteomic Profile of Tissue Factor Microparticles
Q92879782Mechanism Investigation of Tagetes patula L. against Chronic Nonbacterial Prostatitis by Metabolomics and Network Pharmacology
Q91962421Membrane Transporters in Citrus clementina Fruit Juice-Derived Nanovesicles
Q55101372MicroRNA Expression Profiling in Behçet's Disease.
Q41290520MicroRNA expression analysis in endometriotic serum treated mesenchymal stem cells
Q92528066MicroRNA profiles in serum samples from Acute-On-Chronic Liver Failure patients and miR-25-3p as a potential biomarker for survival prediction
Q50046172MicroRNA-1246 is an exosomal biomarker for aggressive prostate cancer
Q89622427MicroRNA-99a Suppresses Breast Cancer Progression by Targeting FGFR3
Q90638370Modular Characteristics and Mechanism of Action of Herbs for Endometriosis Treatment in Chinese Medicine: A Data Mining and Network Pharmacology-Based Identification
Q92800058Molecular Evolution of Extensively Drug-Resistant (XDR) Pseudomonas aeruginosa Strains From Patients and Hospital Environment in a Prolonged Outbreak
Q42256345Molecular characterization of human osteoblast-derived extracellular vesicle mRNA using next-generation sequencing.
Q57817334Molecular characterization of papillary thyroid carcinoma: a potential three-lncRNA prognostic signature
Q91910728Molecular signature of different lesion types in the brain white matter of patients with progressive multiple sclerosis
Q64098709Multiomics Analysis Reveals that GLS and GLS2 Differentially Modulate the Clinical Outcomes of Cancer
Q99712013Mutational Landscape of Esophageal Squamous Cell Carcinoma in an Indian Cohort
Q33706302NFPscanner: a webtool for knowledge-based deciphering of biomedical networks
Q27303163Nanoparticle analysis sheds budding insights into genetic drivers of extracellular vesicle biogenesis
Q61806581Network Analysis Reveals TNF as a Major Hub of Reactive Inflammation Following Spinal Cord Injury
Q31148972Network Tools for the Analysis of Proteomic Data
Q37143014Network analysis reveals potential markers for pediatric adrenocortical carcinoma
Q55289428Newt cells secrete extracellular vesicles with therapeutic bioactivity in mammalian cardiomyocytes.
Q92738169Next-generation sequencing predicts interaction network between miRNA and target genes in lipoteichoic acid-stimulated human neutrophils
Q51226890Non classical Monocytes Levels, Increased by Subcutaneous Fat-Secretome, Are Associated with Less Rehospitalization after Heart Failure Admission.
Q98771864Non-BRAF Mutant Melanoma: Molecular Features and Therapeutical Implications
Q54943797Non-coding RNAs in Various Stages of Liver Disease Leading to Hepatocellular Carcinoma: Differential Expression of miRNAs, piRNAs, lncRNAs, circRNAs, and sno/mt-RNAs.
Q40048925Novel Organelles with Elements of Bacterial and Eukaryotic Secretion Systems Weaponize Parasites of Drosophila
Q58616531Novel drug candidates for treating esophageal carcinoma: A study on differentially expressed genes, using connectivity mapping and molecular docking
Q40318320OAS Gene Family Expression Is Associated with HIV-Related Neurocognitive Disorders
Q90359458Open-Source Software Tools, Databases, and Resources for Single-Cell and Single-Cell-Type Metabolomics
Q41545448Paeoniflorin suppresses pancreatic cancer cell growth by upregulating HTRA3 expression
Q52311064Pathogenic adaptations of Colletotrichum fungi revealed by genome wide gene family evolutionary analyses.
Q90400187Patients with Cholangiocarcinoma Present Specific RNA Profiles in Serum and Urine Extracellular Vesicles Mirroring the Tumor Expression: Novel Liquid Biopsy Biomarkers for Disease Diagnosis
Q55093040Peptide-mediated ‘miniprep’ isolation of extracellular vesicles is suitable for high-throughput proteomics.
Q33875750PfCDPK1 mediated signaling in erythrocytic stages of Plasmodium falciparum
Q60302427Physiochemical and protein datasets related to citrus juice sac cells-derived nanovesicles and microvesicles
Q40067776Plasma proteome coverage is increased by unique peptide recovery from sodium deoxycholate precipitate.
Q38392023Plasma-derived Extracellular Vesicles Contain Predictive Biomarkers and Potential Therapeutic Targets for Myocardial Ischemic (MI) Injury.
Q96126765Plasma-derived extracellular vesicles from Plasmodium vivax patients signal spleen fibroblasts via NF-kB facilitating parasite cytoadherence
Q38674677Platelet extracellular vesicles induce a pro-inflammatory smooth muscle cell phenotype.
Q64100862Potential Regulatory Effects of miR-182-3p in Osteosarcoma via Targeting EBF2
Q64264889Predicting MicroRNA Target Genes and Identifying Hub Genes in IIA Stage Colon Cancer Patients Using Bioinformatics Analysis
Q58720903Prediction of key genes and pathways involved in trastuzumab-resistant gastric cancer
Q33890308Presence of diabetes autoantigens in extracellular vesicles derived from human islets
Q50660827Pro-angiogenic capacities of microvesicles produced by skin wound myofibroblasts.
Q99583668Prognostic values of SNAI family members in breast cancer patients
Q47300407ProphTools: general prioritization tools for heterogeneous biological networks
Q90459992Protein Expression Profiling Identifies Key Proteins and Pathways Involved in Growth Inhibitory Effects Exerted by Guggulsterone in Human Colorectal Cancer Cells
Q40207188Protein composition of the hepatitis A virus quasi-envelope
Q38385118Protein content and functional characteristics of serum-purified exosomes from patients with colorectal cancer revealed by quantitative proteomics
Q48334078Proteome-wide Identification of Glycosylation-dependent Interactors of Galectin-1 and Galectin-3 on Mesenchymal Retinal Pigment Epithelial (RPE) Cells.
Q90194237Proteomic Analysis in Morquio A Cells Treated with Immobilized Enzymatic Replacement Therapy on Nanostructured Lipid Systems
Q50882557Proteomic Analysis of Neuroblastoma-Derived Exosomes: New Insights into a Metastatic Signature.
Q47426212Proteomic Profiling of Exosomes Secreted by Breast Cancer Cells with Varying Metastatic Potential
Q47831410Proteomic Signature Reveals Modulation of Human Macrophage Polarization and Functions Under Differing Environmental Oxygen Conditions.
Q102142946Proteomic analysis of extracellular vesicles reveals an immunogenic cargo in rheumatoid arthritis synovial fluid
Q54996084Proteomic analysis of plasma extracellular vesicles reveals mitochondrial stress upon HTLV-1 infection.
Q63914995Proteomic analysis reveals procoagulant properties of cigarette smoke-induced extracellular vesicles
Q37686305Proteomic profiling of NCI-60 extracellular vesicles uncovers common protein cargo and cancer type-specific biomarkers
Q33601041Proteomic profiling of human intraschisis cavity fluid
Q90738052Proteomic profiling of peritoneal dialysis effluent-derived extracellular vesicles: a longitudinal study
Q37057070Proteomics analysis of vesicles isolated from plasma and urine of prostate cancer patients using a multiplex, aptamer-based protein array.
Q64089761Pulsed SILAC-based proteomic analysis unveils hypoxia- and serum starvation-induced protein synthesis with PHD finger protein 14 (PHF14) as a hypoxia sensitive epigenetic regulator in cell cycle progression
Q37424687Quantitative secretomic analysis of pancreatic cancer cells in serum-containing conditioned medium.
Q37346055Rectal 1% Tenofovir Gel Use Associates with Altered Epidermal Protein Expression
Q37644032Regulation of Nitrogen Metabolism by GATA Zinc Finger Transcription Factors in Yarrowia lipolytica
Q59792522Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica
Q30008871Regulation of matrix metalloproteinases (MMPs) expression and secretion in MDA-MB-231 breast cancer cells by LIM and SH3 protein 1 (LASP1)
Q41826496Reliable FASP-based procedures for optimal quantitative proteomic and phosphoproteomic analysis on samples from acute myeloid leukemia patients.
Q46968387Renal Regenerative Potential of Different Extracellular Vesicle Populations Derived from Bone Marrow Mesenchymal Stromal Cells
Q50065090Role of CD133 Molecule in Wnt Response and Renal Repair
Q55045242SETBP1 induces transcription of a network of development genes by acting as an epigenetic hub.
Q38911581SILAC Based Proteomic Characterization of Exosomes from HIV-1 Infected Cells
Q47210545SNCA Is a Functionally Low-Expressed Gene in Lung Adenocarcinoma
Q89671515STAT1 and its related molecules as potential biomarkers in Mycobacterium tuberculosis infection
Q90472719SWATH-MS based quantitative proteomics analysis reveals that curcumin alters the metabolic enzyme profile of CML cells by affecting the activity of miR-22/IPO7/HIF-1α axis
Q55347019Salivary Exosomes: Emerging Roles in Systemic Disease.
Q38727981Secreted Glioblastoma Nanovesicles Contain Intracellular Signaling Proteins and Active Ras Incorporated in a Farnesylation-dependent Manner
Q41471015Secretome analysis of breast cancer-associated adipose tissue to identify paracrine regulators of breast cancer growth.
Q38390283Secretomic analysis of extracellular vesicles originating from Polyomavirus-negative and Polyomavirus-positive merkel cell carcinoma cell lines
Q64076957Senescence cell-associated extracellular vesicles serve as osteoarthritis disease and therapeutic markers
Q27321003Serum-derived exosomes from non-viremic animals previously exposed to the porcine respiratory and reproductive virus contain antigenic viral proteins
Q55665217Serum-mediated Activation of Bone Marrow-derived Mesenchymal Stem Cells in Ischemic Stroke Patients: A Novel Preconditioning Method.
Q98177423Shensong Yangxin Protects Against Metabolic Syndrome-Induced Ventricular Arrhythmias by Inhibiting Electrical Remodeling
Q52338743Simulation Study of cDNA Dataset to Investigate Possible Association of Differentially Expressed Genes of Human THP1-Monocytic Cells in Cancer Progression Affected by Bacterial Shiga Toxins.
Q55439069Stable STIM1 Knockdown in Self-Renewing Human Neural Precursors Promotes Premature Neural Differentiation.
Q90242439Systematic analysis of ovarian cancer platinum-resistance mechanisms via text mining
Q90239756Systematic exploration of cell morphological phenotypes associated with a transcriptomic query
Q38605199Systemic neutrophil depletion modulates the migration and fate of transplanted human neural stem cells to rescue functional repair
Q98952040Systems-level differential gene expression analysis reveals new genetic variants of oral cancer
Q58547123Targeting SPINK1 in the damaged tumour microenvironment alleviates therapeutic resistance
Q93105571Targeting castration-resistant prostate cancer with androgen receptor antisense oligonucleotide therapy
Q52716432Targeting the Hsp90-Cdc37-client protein interaction to disrupt Hsp90 chaperone machinery.
Q55176168The ASH1-miR-375-YWHAZ Signaling Axis Regulates Tumor Properties in Hepatocellular Carcinoma.
Q59794299The Chinese herbal formula Decoction attenuates cognitive impairment and protects cerebrovascular function in SAMP8 mice
Q58766024The First Dose of Fingolimod Affects Circulating Extracellular Vesicles in Multiple Sclerosis Patients
Q64052625The LIM protein Ajuba/SP1 complex forms a feed forward loop to induce SP1 target genes and promote pancreatic cancer cell proliferation
Q42152328The Multimerization State of the Amyloid-β42 Amyloid Peptide Governs its Interaction Network with the Extracellular Matrix
Q89965003The Need for SMN-Independent Treatments of Spinal Muscular Atrophy (SMA) to Complement SMN-Enhancing Drugs
Q38438419The Protein Content of Extracellular Vesicles Derived from Expanded Human Umbilical Cord Blood-Derived CD133+ and Human Bone Marrow-Derived Mesenchymal Stem Cells Partially Explains Why both Sources are Advantageous for Regenerative Medicine
Q99711401The Proteome and Secretome of Cortical Brain Cells Infected With Herpes Simplex Virus
Q36087241The Role of Parathyroid Hormone-Related Protein (PTHrP) in Osteoblast Response to Microgravity: Mechanistic Implications for Osteoporosis Development
Q89042266The correlation of copy number variations with longevity in a genome-wide association study of Han Chinese
Q37631034The effects of glomerular and tubular renal progenitors and derived extracellular vesicles on recovery from acute kidney injury
Q52608847The impact of circulating preeclampsia-associated extracellular vesicles on the migratory activity and phenotype of THP-1 monocytic cells.
Q92340263The interactome and proteomic responses of ALKBH7 in cell lines by in-depth proteomics analysis
Q50064513The interactome of EBV LMP1 evaluated by proximity-based BioID approach
Q90855655The miR-200 family as prognostic markers in clear cell renal cell carcinoma
Q42374136The nuclear receptor ERβ engages AGO2 in regulation of gene transcription, RNA splicing and RISC loading.
Q55032528The relative resistance of children to sepsis mortality: from pathways to drug candidates.
Q50020631The sequence-specific peptide-binding activity of the protein sulfide isomerase AGR2 directs its' stable binding to the oncogenic receptor EpCAM.
Q52345516Three-microRNA signature identified by bioinformatics analysis predicts prognosis of gastric cancer patients.
Q49769159Time- and polarity-dependent proteomic changes associated with homeostatic scaling at central synapses.
Q36130246Tissue enrichment analysis for C. elegans genomics
Q54945989Transcriptional Profiling of Ligand Expression in Cell Specific Populations of the Adult Mouse Forebrain That Regulates Neurogenesis.
Q88473968Transcriptome and metabolome analysis of Ferula gummosa Boiss. to reveal major biosynthetic pathways of galbanum compounds
Q91755676Transcriptomic analysis of the oleaginous yeast Lipomyces starkeyi during lipid accumulation on enzymatically treated corn stover hydrolysate
Q90588045Transcriptomic analysis reveals candidate genes regulating development and host interactions of Colletotrichum fructicola
Q42778386Translation efficiency is a determinant of the magnitude of miRNA-mediated repression
Q42089153Two factor-based reprogramming of rodent and human fibroblasts into Schwann cells.
Q92093048Ubiquitin ligase TRIM65 promotes colorectal cancer metastasis by targeting ARHGAP35 for protein degradation
Q45341391Ultrafiltration combined with size exclusion chromatography efficiently isolates extracellular vesicles from cell culture media for compositional and functional studies.
Q36313466Unique Physiological and Transcriptional Shifts under Combinations of Salinity, Drought, and Heat.
Q33819200Unraveling the Transcriptional Basis of Temperature-Dependent Pinoxaden Resistance in Brachypodium hybridum
Q92130304Unravelling the Role of Trophoblastic-Derived Extracellular Vesicles in Regulatory T Cell Differentiation
Q38606497Updates in metabolomics tools and resources: 2014-2015.
Q58611624Vesiclepedia 2019: a compendium of RNA, proteins, lipids and metabolites in extracellular vesicles
Q90663628Vesicles Shed by Pathological Murine Adipocytes Spread Pathology: Characterization and Functional Role of Insulin Resistant/Hypertrophied Adiposomes
Q52662483miR-296-3p Negatively Regulated by Nicotine Stimulates Cytoplasmic Translocation of c-Myc via MK2 to Suppress Chemotherapy Resistance.
Q92423737microRNA 92b-3p regulates primordial follicle assembly by targeting TSC1 in neonatal mouse ovaries
Q64281017oxSWATH: An integrative method for a comprehensive redox-centered analysis combined with a generic differential proteomics screening