| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bioinformatics/NawrockiE13 |
| P356 | DOI | 10.1093/BIOINFORMATICS/BTT509 |
| P3181 | OpenCitations bibliographic resource ID | 213688 |
| P932 | PMC publication ID | 3810854 |
| P698 | PubMed publication ID | 24008419 |
| P5875 | ResearchGate publication ID | 256451705 |
| P4011 | Semantic Scholar paper ID | cc212956c4daf8c27843bc7e66d4270d0b8b9888 |
| P50 | author | Sean Eddy | Q7440970 |
| Eric P. Nawrocki | Q64889248 | ||
| P2860 | cites work | A probabilistic model of local sequence alignment that simplifies statistical significance estimation | Q21092573 |
| Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
| Infernal 1.0: inference of RNA alignments | Q24646921 | ||
| Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA | Q24676670 | ||
| Rfam: an RNA family database | Q24682045 | ||
| Rfam 11.0: 10 years of RNA families | Q28278745 | ||
| The Ribosomal Database Project: improved alignments and new tools for rRNA analysis | Q29547434 | ||
| Accelerated Profile HMM Searches | Q29547576 | ||
| Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy | Q34334442 | ||
| Sequence-based heuristics for faster annotation of non-coding RNA families. | Q34464822 | ||
| Local RNA structure alignment with incomplete sequence | Q37181145 | ||
| Homology detection via family pairwise search | Q38549689 | ||
| Small subunit ribosomal RNA modeling using stochastic context-free grammars | Q74286047 | ||
| P275 | copyright license | Creative Commons Attribution 3.0 Unported | Q14947546 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 22 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | computational mathematics | Q1122491 |
| Infernal | Q42115998 | ||
| P304 | page(s) | 2933-5 | |
| P577 | publication date | 2013-11-15 | |
| P1433 | published in | Bioinformatics | Q4914910 |
| P1476 | title | Infernal 1.1: 100-fold faster RNA homology searches | |
| P478 | volume | 29 |
| Q30387020 | 3D RNA and Functional Interactions from Evolutionary Couplings |
| Q92875669 | 3dRNA v2.0: An Updated Web Server for RNA 3D Structure Prediction |
| Q56927601 | A Freeloader? The Highly Eroded Yet Large Genome of the Serratia symbiotica Symbiont of Cinara strobi |
| Q64228224 | A High-quality Draft Genome Assembly of Sinella curviseta: A Soil Model Organism (Collembola) |
| Q42136338 | A Machine Learning Approach for Accurate Annotation of Noncoding RNAs |
| Q60047567 | A Method for RNA Structure Prediction Shows Evidence for Structure in lncRNAs |
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| Q101166023 | A catalogue of biochemically diverse CRISPR-Cas9 orthologs |
| Q92188410 | A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set |
| Q104486502 | A chromosome-scale genome assembly of a diploid alfalfa, the progenitor of autotetraploid alfalfa |
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| Q30418475 | A common set of distinct features that characterize noncoding RNAs across multiple species |
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| Q47583636 | A comprehensive profile of circulating RNAs in human serum |
| Q55513249 | A comprehensive review of web-based resources of non-coding RNAs for plant science research. |
| Q40617343 | A computational strategy for the search of regulatory small RNAs in Actinobacillus pleuropneumoniae |
| Q97523786 | A database for ITS2 sequences from nematodes |
| Q58753977 | A draft genome assembly of the Chinese sillago (Sillago sinica), the first reference genome for Sillaginidae fishes |
| Q91622184 | A draft genome for Spatholobus suberectus |
| Q37660945 | A family of interaction-adjusted indices of community similarity. |
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| Q35229286 | An increasing opine carbon bias in artificial exudation systems and genetically modified plant rhizospheres leads to an increasing reshaping of bacterial populations |
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| Q36008411 | Anaerobic biosynthesis of the lower ligand of vitamin B12. |
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| Q37134429 | Analysis of the Mitochondrial Genome in Hypomyces aurantius Reveals a Novel Twintron Complex in Fungi |
| Q42690587 | Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution |
| Q89834766 | Animal, Fungi, and Plant Genome Sequences Harbor Different Non-Canonical Splice Sites |
| Q46112416 | Antimicrobial Activity of Actinobacteria Isolated From the Guts of Subterranean Termites |
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| Q28595573 | Avoidance of stochastic RNA interactions can be harnessed to control protein expression levels in bacteria and archaea |
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| Q60936628 | Bacterial Small RNAs in the Genus spp |
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| Q46297427 | Bacterial microbiomes of individual ectomycorrhizal Pinus sylvestris roots are shaped by soil horizon and differentially sensitive to nitrogen addition. |
| Q34363878 | Bacterial noncoding Y RNAs are widespread and mimic tRNAs. |
| Q55657975 | Big Sound and Extreme Fungi-Xerophilic, Halotolerant Aspergilli and Penicillia with Low Optimal Temperature as Invaders of Historic Pipe Organs. |
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| Q38683796 | Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts |
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| Q104520979 | Genome-wide mapping of therapeutically-relevant SARS-CoV-2 RNA structures |
| Q91949087 | Genome‑wide integrated analysis demonstrates widespread functions of lncRNAs in mammary gland development and lactation in dairy goats |
| Q37652494 | Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota |
| Q92872742 | Genomic Analysis of Mycobacterium tuberculosis Isolates and Construction of a Beijing Lineage Reference Genome |
| Q59351038 | Genomic Analysis of the Recent Viral Isolate vB_BthP-Goe4 Reveals Increased Diversity of φ29-Like Phages |
| Q35915195 | Genomic analysis of the nitrate-respiring Sphingopyxis granuli (formerly Sphingomonas macrogoltabida) strain TFA. |
| Q41202273 | Genomic and transcriptomic analysis of the toluene degrading black yeast Cladophialophora immunda. |
| Q58078932 | Genomic discovery of the hypsin gene and biosynthetic pathways for terpenoids in Hypsizygus marmoreus |
| Q91819120 | Genomic insights into mite phylogeny, fitness, development, and reproduction |
| Q92852495 | Giant virus diversity and host interactions through global metagenomics |
| Q29220832 | Giant viruses with an expanded complement of translation system components |
| Q36534646 | Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs |
| Q91751821 | GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering |
| Q57077398 | Group I introns are widespread in archaea |
| Q36434994 | GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes |
| Q35261736 | Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development. |
| Q35526333 | HOTAIR forms an intricate and modular secondary structure. |
| Q110951039 | Haloterrigena gelatinilytica sp. nov., a new extremely halophilic archaeon isolated from salt-lake |
| Q40982529 | Hammerhead Ribozymes in Archaeal Genomes: A Computational Hunt. |
| Q90166035 | Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars |
| Q40824780 | Hepatitis B virus nuclear export elements: RNA stem-loop α and β, key parts of the HBV post-transcriptional regulatory element |
| Q92045341 | Hidden cases of tRNA gene duplication and remolding in mitochondrial genomes of amphipods |
| Q59125222 | Hidden diversity of soil giant viruses |
| Q90113156 | High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing |
| Q92688576 | High Quality Draft Genome of Arogyapacha (Trichopus zeylanicus), an Important Medicinal Plant Endemic to Western Ghats of India |
| Q40880956 | High quality reference genome of drumstick tree (Moringa oleifera Lam.), a potential perennial crop |
| Q64948085 | High resolution annotation of zebrafish transcriptome using long-read sequencing. |
| Q90384026 | High-Quality Draft Genome Sequences of Eight Bacteria Isolated from Fungus Gardens Grown by Trachymyrmex septentrionalis Ants |
| Q42363897 | High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain |
| Q30379307 | High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia. |
| Q30378390 | High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr. |
| Q37661756 | High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698). |
| Q40665782 | High-throughput determination of RNA structure by proximity ligation |
| Q64077806 | Horizontally-acquired genetic elements in the mitochondrial genome of a centrohelid Marophrys sp. SRT127 |
| Q92879121 | How to benchmark RNA secondary structure prediction accuracy |
| Q35519676 | IM-TORNADO: a tool for comparison of 16S reads from paired-end libraries |
| Q56984522 | IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes |
| Q30490173 | IMG/M: integrated genome and metagenome comparative data analysis system |
| Q37735516 | Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates |
| Q64930785 | Identification and Characterization of Salt-Responsive MicroRNAs in Vicia faba by High-Throughput Sequencing. |
| Q36379216 | Identification and Characterization of a Class of MALAT1-like Genomic Loci |
| Q42254255 | Identification and analysis of integrons and cassette arrays in bacterial genomes |
| Q92382705 | Identification and characterization of miRNAs and lncRNAs of coho salmon (Oncorhynchus kisutch) in normal immune organs |
| Q42377413 | Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics |
| Q36141351 | Identification of Non-Coding RNAs in the Candida parapsilosis Species Group |
| Q89634789 | Identification of RNA 3´ ends and termination sites in Haloferax volcanii |
| Q35922639 | Identification of Soil Microbes Capable of Utilizing Cellobiosan |
| Q41670248 | Identification of long non-coding RNA in rice lines resistant to Rice blast pathogen Maganaporthe oryzae |
| Q98898225 | Identification of protein-protected mRNA fragments and structured excised intron RNAs in human plasma by TGIRT-seq peak calling |
| Q46246177 | Identification of sRNA mediated responses to nutrient depletion in Burkholderia pseudomallei |
| Q90333686 | Identifying Structural Domains and Conserved Regions in the Long Non-Coding RNA lncTCF7 |
| Q36002417 | Identifying novel sequence variants of RNA 3D motifs |
| Q37157800 | Improved hybrid de novo genome assembly of domesticated apple (Malus x domestica) |
| Q57169240 | Improved reference genome by single-molecule sequencing and chromosome conformation capture technologies |
| Q36386371 | In silico discovery and modeling of non-coding RNA structure in viruses |
| Q52631133 | In silico identification of microRNAs predicted to regulate N-myristoyltransferase and Methionine Aminopeptidase 2 functions in cancer and infectious diseases. |
| Q107077787 | In vivo structural characterization of the SARS-CoV-2 RNA genome identifies host proteins vulnerable to repurposed drugs |
| Q55344083 | Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola. |
| Q89513764 | Integrated mRNA and miRNA transcriptome analysis reveals a regulatory network for tuber expansion in Chinese yam (Dioscorea opposita) |
| Q41626922 | Integrative and conjugative elements and their hosts: composition, distribution and organization |
| Q99567371 | Integrative microRNA and mRNA expression profiling in acute aristolochic acid nephropathy in mice |
| Q92764911 | Integron-Derived Aminoglycoside-Sensing Riboswitches Control Aminoglycoside Acetyltransferase Resistance Gene Expression |
| Q55123935 | Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum |
| Q40892807 | Isolation and Characterization of the First Xylanolytic Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1 and Its Unusual Multidomain Glycosidase |
| Q55167855 | Isolation and characterization of 5S rDNA sequences in catfishes genome (Heptapteridae and Pseudopimelodidae): perspectives for rDNA studies in fish by C0t method. |
| Q92572994 | Isolation and characterization of a thermophilic sulfur- and iron-reducing thaumarchaeote from a terrestrial acidic hot spring |
| Q93160629 | Isolation and characterization of diverse microbial representatives from the human skin microbiome |
| Q61806402 | Kelpie: generating full-length 'amplicons' from whole-metagenome datasets |
| Q47550801 | Know Your Enemy: Successful Bioinformatic Approaches to Predict Functional RNA Structures in Viral RNAs. |
| Q30948853 | Lactococcus garvieae: a small bacteria and a big data world. |
| Q47096549 | LeishDB: a database of coding gene annotation and non-coding RNAs in Leishmania braziliensis |
| Q92132617 | Lipid and DHA-production in Aurantiochytrium sp. - Responses to nitrogen starvation and oxygen limitation revealed by analyses of production kinetics and global transcriptomes |
| Q62838162 | LncFinder: an integrated platform for long non-coding RNA identification utilizing sequence intrinsic composition, structural information and physicochemical property |
| Q28597716 | Lokiarchaeota Marks the Transition between the Archaeal and Eukaryotic Selenocysteine Encoding Systems |
| Q36655548 | Loss of Conserved Noncoding RNAs in Genomes of Bacterial Endosymbionts |
| Q36520911 | Maize pan-transcriptome provides novel insights into genome complexity and quantitative trait variation. |
| Q38462367 | Maternal and zygotic transcriptomes in the appendicularian, Oikopleura dioica: novel protein-encoding genes, intra-species sequence variations, and trans-spliced RNA leader. |
| Q97522827 | Maternal obesity alters C19MC microRNAs expression profile in fetal umbilical cord blood |
| Q49772965 | Metabolism of Free Guanidine in Bacteria Is Regulated by a Widespread Riboswitch Class. |
| Q89683391 | Metabolome and Transcriptome Analysis of Hexaploid Solidago canadensis Roots Reveals its Invasive Capacity Related to Polyploidy |
| Q46403610 | Metagenomics uncovers gaps in amplicon-based detection of microbial diversity |
| Q59793202 | Metatranscriptomes Reveal That All Three Domains of Life Are Active but Are Dominated by Bacteria in the Fennoscandian Crystalline Granitic Continental Deep Biosphere |
| Q35891795 | Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality. |
| Q55265006 | Methylation guide RNA evolution in archaea: structure, function and genomic organization of 110 C/D box sRNA families across six Pyrobaculum species. |
| Q35799927 | MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae |
| Q92768657 | Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics |
| Q47782384 | Microbial composition of biofilm treating wastewater rich in bisphenol A. |
| Q54257313 | Microbial metagenome of urinary tract infection. |
| Q47600756 | Minimal and RNA-free RNase P in Aquifex aeolicus |
| Q92322623 | MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization |
| Q35922419 | Mitochondrial Genome Sequence of the Scabies Mite Provides Insight into the Genetic Diversity of Individual Scabies Infections |
| Q36074986 | Mobile genes in the human microbiome are structured from global to individual scales. |
| Q57175243 | Molecular footprints of inshore aquatic adaptation in Indo-Pacific humpback dolphin (Sousa chinensis) |
| Q64120478 | Multiple Genome Sequences of Lactobacillus pentosus Strains Isolated from Biofilms on the Skin of Fermented Green Table Olives |
| Q60919492 | Multiple Sequence Alignments Enhance Boundary Definition of RNA Structures |
| Q64066240 | Musashi binding elements in Zika and related Flavivirus 3'UTRs: A comparative study in silico |
| Q36892776 | Myriad Triple-Helix-Forming Structures in the Transposable Element RNAs of Plants and Fungi |
| Q28828718 | NCBI prokaryotic genome annotation pipeline |
| Q90132894 | NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements |
| Q92890407 | Nanopore Sequencing Significantly Improves Genome Assembly of the Protozoan Parasite Trypanosoma cruzi |
| Q35118800 | Natural antisense transcripts and long non-coding RNA in Neurospora crassa |
| Q35758656 | New Noncoding Lytic Transcripts Derived from the Epstein-Barr Virus Latency Origin of Replication, oriP, Are Hyperedited, Bind the Paraspeckle Protein, NONO/p54nrb, and Support Viral Lytic Transcription |
| Q28314889 | New classes of self-cleaving ribozymes revealed by comparative genomics analysis |
| Q56888505 | Non-Coding RNA Analysis Using the Rfam Database |
| Q36534894 | Non-cyanobacterial diazotrophs mediate dinitrogen fixation in biological soil crusts during early crust formation |
| Q36160650 | Noncanoncial signal recognition particle RNAs in a major eukaryotic phylum revealed by purification of SRP from the human pathogen Cryptococcus neoformans |
| Q90029453 | Novel ribozymes: discovery, catalytic mechanisms, and the quest to understand biological function |
| Q64072318 | Nucleomorph Small RNAs in Cryptophyte and Chlorarachniophyte Algae |
| Q34161534 | Orchidstra 2.0-A Transcriptomics Resource for the Orchid Family |
| Q50421315 | PATTERNA: transcriptome-wide search for functional RNA elements via structural data signatures. |
| Q90458687 | PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph |
| Q89684134 | Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis |
| Q55514201 | Parallel and Gradual Genome Erosion in the Blattabacterium Endosymbionts of Mastotermes darwiniensis and Cryptocercus Wood Roaches. |
| Q55078002 | Parallels between experimental and natural evolution of legume symbionts. |
| Q36124005 | Patterns of Transcript Abundance of Eukaryotic Biogeochemically-Relevant Genes in the Amazon River Plume |
| Q92373673 | Patterns of conservation of spliceosomal intron structures and spliceosome divergence in representatives of the diplomonad and parabasalid lineages |
| Q40064092 | Perilipin-2 modulates dietary fat-induced microbial global gene expression profiles in the mouse intestine |
| Q52351412 | Pervasive Regulatory Functions of mRNA Structure Revealed by High-Resolution SHAPE Probing. |
| Q31066145 | Phylogenetic distribution and evolutionary pattern of an α-proteobacterial small RNA gene that controls polyhydroxybutyrate accumulation in Sinorhizobium meliloti |
| Q92432700 | Phylogenetic, genomic, and biogeographic characterization of a novel and ubiquitous marine invertebrate-associated Rickettsiales parasite, Candidatus Aquarickettsia rohweri, gen. nov., sp. nov |
| Q42699236 | Phylogenomic analysis of Candidatus 'Izimaplasma' species: free-living representatives from a Tenericutes clade found in methane seeps |
| Q35677607 | Phylogenomic identification of regulatory sequences in bacteria: an analysis of statistical power and an application to Borrelia burgdorferi sensu lato |
| Q28603772 | Phylogeny Inference of Closely Related Bacterial Genomes: Combining the Features of Both Overlapping Genes and Collinear Genomic Regions |
| Q50322018 | Polymorphism in Mitochondrial Group I Introns among Cryptococcus neoformans and Cryptococcus gattii Genotypes and Its Association with Drug Susceptibility. |
| Q38974963 | Post-transcriptional mending of gene sequences: Looking under the hood of mitochondrial gene expression in diplonemids |
| Q92179663 | Predicting functional long non-coding RNAs validated by low throughput experiments |
| Q89565540 | Prediction and diversity of tracrRNAs from type II CRISPR-Cas systems |
| Q47160450 | Preventive Trichuris suis ova (TSO) treatment protects immunocompetent rabbits from DSS colitis but may be detrimental under conditions of immunosuppression |
| Q48188899 | Prey Range and Genome Evolution of Halobacteriovorax marinus Predatory Bacteria from an Estuary |
| Q30017682 | Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis |
| Q31092253 | ProbFold: a probabilistic method for integration of probing data in RNA secondary structure prediction |
| Q34211331 | ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search. |
| Q36791606 | Probing-directed identification of novel structured RNAs |
| Q38639057 | Progress and Current Challenges in Modeling Large RNAs |
| Q92153174 | Protein tyrosine phosphatase non-receptor type 22 modulates colitis in a microbiota-dependent manner |
| Q93038066 | Pseudomolecule-level assembly of the Chinese oil tree yellowhorn (Xanthoceras sorbifolium) genome |
| Q39697708 | Quality Assessment of Domesticated Animal Genome Assemblies |
| Q38811058 | RIblast: An ultrafast RNA-RNA interaction prediction system based on a seed-and-extension approach |
| Q35824347 | RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure |
| Q47857987 | RNA 3D Structure Modeling by Combination of Template-Based Method ModeRNA, Template-Free Folding with SimRNA, and Refinement with QRNAS. |
| Q56271407 | RNA Structure Elements Conserved between Mouse and 59 Other Vertebrates |
| Q40336723 | RNA Thermodynamic Structural Entropy |
| Q36106467 | RNA damage in biological conflicts and the diversity of responding RNA repair systems |
| Q28658858 | RNA families in Epstein-Barr virus |
| Q88979319 | RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses |
| Q91496498 | RNA secondary structure prediction using an ensemble of two-dimensional deep neural networks and transfer learning |
| Q104134900 | RNA structure-wide discovery of functional interactions with multiplexed RNA motif library |
| Q91678594 | RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools |
| Q46249558 | RNA-seq-based genome annotation and identification of long-noncoding RNAs in the grapevine cultivar 'Riesling'. |
| Q40977216 | RNAPattMatch: a web server for RNA sequence/structure motif detection based on pattern matching with flexible gaps |
| Q58611644 | RNAcentral: a hub of information for non-coding RNA sequences |
| Q28598251 | RNAlien - Unsupervised RNA family model construction |
| Q92915315 | RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment |
| Q38882936 | RNAscClust: clustering RNA sequences using structure conservation and graph based motifs |
| Q64916718 | Rapid Genetic Code Evolution in Green Algal Mitochondrial Genomes. |
| Q57031792 | Rare variants of the FMN riboswitch class in Clostridium difficile and other bacteria exhibit altered ligand specificity |
| Q92254348 | Recompleting the Caenorhabditis elegans genome |
| Q90261968 | Reference gene and small RNA data from multiple tissues of Davidia involucrata Baill |
| Q91733982 | Reference genome and comparative genome analysis for the WHO reference strain for Mycobacterium bovis BCG Danish, the present tuberculosis vaccine |
| Q92149982 | Regulatory context drives conservation of glycine riboswitch aptamers |
| Q28828404 | Reinventing the Wheel and Making It Round Again: Evolutionary Convergence in Buchnera-Serratia Symbiotic Consortia between the Distantly Related Lachninae Aphids Tuberolachnus salignus and Cinara cedri |
| Q28650460 | Rfam 12.0: updates to the RNA families database |
| Q47140251 | Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families |
| Q90358183 | Rhopalocnemis phalloides has one of the most reduced and mutated plastid genomes known |
| Q98226239 | Riboflow: Using Deep Learning to Classify Riboswitches With ∼99% Accuracy |
| Q30703827 | Ribosomal Database Project: data and tools for high throughput rRNA analysis |
| Q40372669 | Riboswitch Scanner: an efficient pHMM-based web-server to detect riboswitches in genomic sequences. |
| Q46386482 | Riboswitch diversity and distribution |
| Q52668476 | Riboswitch regulation in cyanobacteria is independent of their habitat adaptations. |
| Q55307078 | Riboswitches for the alarmone ppGpp expand the collection of RNA-based signaling systems. |
| Q28652954 | Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling |
| Q58331077 | Roquin targets mRNAs in a 3'-UTR-specific manner by different modes of regulation |
| Q46268245 | SAM-VI RNAs Selectively Bind S-adenosylmethionine and Exhibit Similarities to SAM-III Riboswitches. |
| Q46271532 | SMORE: Synteny Modulator of Repetitive Elements |
| Q49169091 | Search for 5'-leader regulatory RNA structures based on gene annotation aided by the RiboGap database. |
| Q35619250 | Secondary structural entropy in RNA switch (Riboswitch) identification. |
| Q97537358 | Semimytilus algosus: first known hermaphroditic mussel with doubly uniparental inheritance of mitochondrial DNA |
| Q38923490 | Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice |
| Q90782031 | Serial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids' di-symbiotic systems |
| Q34007271 | Settling down: the genome of Serratia symbiotica from the aphid Cinara tujafilina zooms in on the process of accommodation to a cooperative intracellular life |
| Q91562056 | Shedding light on the dark matter of the biomolecular structural universe: Progress in RNA 3D structure prediction |
| Q40046452 | Small RNAs in vancomycin-resistant Enterococcus faecium involved in daptomycin response and resistance. |
| Q28831194 | Snapshots of a shrinking partner: Genome reduction in Serratia symbiotica |
| Q36386102 | Solving a Bloody Mess: B-Vitamin Independent Metabolic Convergence among Gammaproteobacterial Obligate Endosymbionts from Blood-Feeding Arthropods and the Leech Haementeria officinalis. |
| Q110696378 | Sphingomonas arenae sp. nov., isolated from desert soil |
| Q42217027 | Stop codon reassignments in the wild |
| Q46062434 | Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome. |
| Q91636262 | Streptomyces spp. From the Marine Sponge Antho dichotoma: Analyses of Secondary Metabolite Biosynthesis Gene Clusters and Some of Their Products |
| Q35657711 | Strong spurious transcription likely contributes to DNA insert bias in typical metagenomic clone libraries |
| Q49901156 | StructRNAfinder: an automated pipeline and web server for RNA families prediction. |
| Q39023262 | Structural and Functional Annotation of Long Noncoding RNAs |
| Q34091541 | Structural, functional, and taxonomic diversity of three preQ1 riboswitch classes. |
| Q28654828 | Structured RNAs and synteny regions in the pig genome |
| Q41007693 | Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families |
| Q47138604 | Sugar Metabolism of the First Thermophilic Planctomycete Thermogutta terrifontis: Comparative Genomic and Transcriptomic Approaches |
| Q38429466 | Super-lncRNAs: Identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation |
| Q56267127 | TERribly Difficult: Searching for Telomerase RNAs in Saccharomycetes |
| Q55287094 | TPP riboswitch-dependent regulation of an ancient thiamin transporter in Candida. |
| Q91934249 | TRANSNAP: a web database providing comprehensive information on Japanese pear transcriptome |
| Q52367405 | Tandem riboswitches form a natural Boolean logic gate to control purine metabolism in bacteria. |
| Q92589618 | Targeted sequencing reveals expanded genetic diversity of human transfer RNAs |
| Q53779861 | Ten steps to get started in Genome Assembly and Annotation |
| Q90680924 | The Bacterial Microbiome Associated With Arid Biocrusts and the Biogeochemical Influence of Biocrusts Upon the Underlying Soil |
| Q39999002 | The Coding Region of the HCV Genome Contains a Network of Regulatory RNA Structures |
| Q30380015 | The EMBL-EBI bioinformatics web and programmatic tools framework. |
| Q36109037 | The Genetic Analysis of an Acinetobacter johnsonii Clinical Strain Evidenced the Presence of Horizontal Genetic Transfer. |
| Q89578511 | The Genome Assembly and Annotation of the Southern Elephant Seal Mirounga leonina |
| Q55490093 | The Genome Sequences of 90 Mushrooms. |
| Q36429379 | The Genome and Methylome of a Beetle with Complex Social Behavior, Nicrophorus vespilloides (Coleoptera: Silphidae). |
| Q36235773 | The Genome of the Trinidadian Guppy, Poecilia reticulata, and Variation in the Guanapo Population |
| Q57104362 | The High-Quality Genome Sequence of the Oceanic Island Endemic Species Drosophila guanche Reveals Signals of Adaptive Evolution in Genes Related to Flight and Genome Stability |
| Q60952331 | The Integrator complex regulates differential snRNA processing and fate of adult stem cells in the highly regenerative planarian Schmidtea mediterranea |
| Q40710269 | The Large Mitochondrial Genome of Symbiodinium minutum Reveals Conserved Noncoding Sequences between Dinoflagellates and Apicomplexans. |
| Q36882182 | The Mycobacterium phlei Genome: Expectations and Surprises |
| Q55180877 | The Phytophthora cactorum genome provides insights into the adaptation to host defense compounds and fungicides. |
| Q64109316 | The RNA workbench 2.0: next generation RNA data analysis |
| Q38674661 | The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy |
| Q37712117 | The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis |
| Q60307884 | The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence |
| Q33878688 | The Whole-Genome and Transcriptome of the Manila Clam (Ruditapes philippinarum). |
| Q110697456 | The application of riboswitch sequencing for human gut bacterial classification and identification |
| Q91387530 | The apricot (Prunus armeniaca L.) genome elucidates Rosaceae evolution and beta-carotenoid synthesis |
| Q107377255 | The architecture of the SARS-CoV-2 RNA genome inside virion |
| Q91643369 | The chromosome-scale assembly of the willow genome provides insight into Salicaceae genome evolution |
| Q91484395 | The complete mitochondrial genome of Sarcoptes scabiei var. nyctereutis from the Japanese raccoon dog: Prediction and detection of two transfer RNAs (tRNA-A and tRNA-Y) |
| Q35704516 | The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum |
| Q47603928 | The discovery potential of RNA processing profiles. |
| Q42778353 | The downregulation of putative anticancer target BORIS/CTCFL in an addicted myeloid cancer cell line modulates the expression of multiple protein coding and ncRNA genes |
| Q34007303 | The draft assembly of the radically organized Stylonychia lemnae macronuclear genome |
| Q94257869 | The draft genome of a wild barley genotype reveals its enrichment in genes related to biotic and abiotic stresses compared to cultivated barley |
| Q34448450 | The draft genome of the large yellow croaker reveals well-developed innate immunity |
| Q90115485 | The genome evolution and domestication of tropical fruit mango |
| Q100751404 | The genome of Chinese flowering cherry (Cerasus serrulata) provides new insights into Cerasus species |
| Q37678930 | The genome of Leishmania adleri from a mammalian host highlights chromosome fission in Sauroleishmania |
| Q90453921 | The genome of Populus alba x Populus tremula var. glandulosa clone 84K |
| Q28595687 | The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion |
| Q46493459 | The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection |
| Q28595417 | The genome, transcriptome, and proteome of the nematode Steinernema carpocapsae: evolutionary signatures of a pathogenic lifestyle |
| Q88785739 | The genomic landscape of evolutionary convergence in mammals, birds and reptiles |
| Q41881028 | The genomic sequence of Exiguobacterium chiriqhucha str. N139 reveals a species that thrives in cold waters and extreme environmental conditions |
| Q89465476 | The high-quality genome of diploid strawberry (Fragaria nilgerrensis) provides new insights into anthocyanin accumulation |
| Q89637802 | The hornwort genome and early land plant evolution |
| Q41199610 | The identification and functional annotation of RNA structures conserved in vertebrates. |
| Q34042236 | The mitochondrial genomes of the glaucophytes Gloeochaete wittrockiana and Cyanoptyche gloeocystis: multilocus phylogenetics suggests a monophyletic archaeplastida |
| Q92220937 | The persimmon (Diospyros oleifera Cheng) genome provides new insights into the inheritance of astringency and ancestral evolution |
| Q90249260 | The pomegranate (Punica granatum L.) draft genome dissects genetic divergence between soft- and hard-seeded cultivars |
| Q93264979 | The resistomes of six carbapenem-resistant pathogens - a critical genotype-phenotype analysis |
| Q26746091 | The role of mRNA structure in bacterial translational regulation |
| Q39509335 | The rubber tree genome reveals new insights into rubber production and species adaptation. |
| Q42375689 | The sea cucumber genome provides insights into morphological evolution and visceral regeneration |
| Q61799562 | The sequence and de novo assembly of Oxygymnocypris stewartii genome |
| Q60918008 | The sequence and de novo assembly of hog deer genome |
| Q55108322 | The small RNA complement of adult Schistosoma haematobium. |
| Q90776971 | The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization |
| Q46286784 | The systematic analysis of ultraconserved genomic regions in the budding yeast |
| Q92795173 | The vault RNA of Trypanosoma brucei plays a role in the production of trans-spliced mRNA |
| Q34512304 | The yjdF riboswitch candidate regulates gene expression by binding diverse azaaromatic compounds |
| Q41206279 | Thermodynamic matchers for the construction of the cuckoo RNA family |
| Q41689725 | Thiamine Acquisition Strategies Impact Metabolism and Competition in the Gut Microbe Bacteroides thetaiotaomicron |
| Q37432110 | Third Report on Chicken Genes and Chromosomes 2015. |
| Q92300604 | To assemble or not to resemble-A validated Comparative Metatranscriptomics Workflow (CoMW) |
| Q42656120 | Towards a balanced view of the bacterial tree of life |
| Q38854519 | Towards a comprehensive picture of alloacceptor tRNA remolding in metazoan mitochondrial genomes |
| Q55287334 | Transcriptional Regulation of Cysteine and Methionine Metabolism in Lactobacillus paracasei FAM18149. |
| Q27311580 | Transcriptional control of an essential ribozyme in Drosophila reveals an ancient evolutionary divide in animals |
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