| scholarly article | Q13442814 |
| P50 | author | Josep M. Casacuberta | Q53544561 |
| Raúl Castanera | Q57244808 | ||
| Amélie Bardil | Q58130249 | ||
| Fernando Cruz | Q58149551 | ||
| Pere Arús | Q23505556 | ||
| Tyler Alioto | Q37389576 | ||
| Konstantinos G Alexiou | Q37828537 | ||
| Jordi Garcia-Mas | Q41810087 | ||
| Irene Julca | Q42322119 | ||
| P2093 | author name string | Toni Gabaldón | |
| José L García | |||
| Marta Gut | |||
| Paolo Ribeca | |||
| Anna Vlasova | |||
| Beatriz Galán | |||
| Leonor Frias | |||
| Amit Dhingra | |||
| Pere Puigdomènech | |||
| Michelle Wirthensohn | |||
| Werner Howad | |||
| Jèssica Gómez-Garrido | |||
| Fabio Barteri | |||
| Henri Duval | |||
| Jordi Morata | |||
| Ángel Fernández I Martí | |||
| María J Rubio Cabetas | |||
| P2860 | cites work | Evolution Is an Experiment: Assessing Parallelism in Crop Domestication and Experimental Evolution: (Nei Lecture, SMBE 2014, Puerto Rico). | Q46723730 |
| Assigning duplication events to relative temporal scales in genome-wide studies | Q47344017 | ||
| The paleontology of intergene retrotransposons of maize | Q47750190 | ||
| Distribution of SUN, OVATE, LC, and FAS in the tomato germplasm and the relationship to fruit shape diversity. | Q48059238 | ||
| The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding. | Q49279959 | ||
| Using MUMmer to identify similar regions in large sequence sets. | Q51888028 | ||
| Plant lineage-specific amplification of transcription factor binding motifs by Miniature Inverted-repeat Transposable Elements (MITEs). | Q52585948 | ||
| A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea. | Q55262153 | ||
| Accurate detection of complex structural variations using single-molecule sequencing | Q57046462 | ||
| Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries | Q57275639 | ||
| Elucidation of the Amygdalin Pathway Reveals the Metabolic Basis of Bitter and Sweet Almonds (Prunus dulcis) | Q57295867 | ||
| Using geneid to Identify Genes | Q57452991 | ||
| Genome re-sequencing reveals the evolutionary history of peach fruit edibility | Q60300631 | ||
| genetics and applications after de novo genome sequencing: achievements and prospects | Q64072377 | ||
| Attention sports fans! The far-reaching contributions of bud sport mutants to horticulture and plant biology | Q90431258 | ||
| Insertion of a transposon-like sequence in the 5'-flanking region of the YUCCA gene causes the stony hard phenotype | Q91003626 | ||
| Mutation of a bHLH transcription factor allowed almond domestication | Q92732723 | ||
| Automated generation of heuristics for biological sequence comparison | Q21061202 | ||
| ETE: a python Environment for Tree Exploration | Q21093654 | ||
| Minimus: a fast, lightweight genome assembler | Q21284215 | ||
| The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution | Q22122077 | ||
| Evolution of the angiosperms: calibrating the family tree | Q24522462 | ||
| The Factor for Bitterness in the Sweet Almond. | Q24531991 | ||
| tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence | Q24544402 | ||
| Infernal 1.1: 100-fold faster RNA homology searches | Q24604787 | ||
| CDD: a Conserved Domain Database for the functional annotation of proteins | Q24610576 | ||
| PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions | Q24612855 | ||
| MUSCLE: multiple sequence alignment with high accuracy and high throughput | Q24613456 | ||
| InterPro in 2011: new developments in the family and domain prediction database | Q24620144 | ||
| Fast and accurate short read alignment with Burrows-Wheeler transform | Q24653853 | ||
| Combined evidence annotation of transposable elements in genome sequences | Q24813273 | ||
| Kalign--an accurate and fast multiple sequence alignment algorithm | Q25255688 | ||
| M-Coffee: combining multiple sequence alignment methods with T-Coffee | Q25257876 | ||
| Basic local alignment search tool | Q25938991 | ||
| Peaches Preceded Humans: Fossil Evidence from SW China | Q27305877 | ||
| Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments | Q27486121 | ||
| New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 | Q27860476 | ||
| EMBOSS: the European Molecular Biology Open Software Suite | Q27860491 | ||
| A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood | Q27861000 | ||
| Evolutionary Genomics of Peach and Almond Domestication | Q28588653 | ||
| Rfam 12.0: updates to the RNA families database | Q28650460 | ||
| DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony | Q42655147 | ||
| Phylogenetic relationships of cultivated Prunus species from an analysis of chloroplast DNA variation. | Q45949113 | ||
| PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment | Q46598611 | ||
| PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants | Q28710192 | ||
| MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences | Q28744299 | ||
| PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants | Q28818092 | ||
| Genome sequence of the olive tree, Olea europaea | Q28828831 | ||
| SignalP 4.0: discriminating signal peptides from transmembrane regions | Q29547202 | ||
| ABySS: a parallel assembler for short read sequence data | Q29547263 | ||
| KEGG for integration and interpretation of large-scale molecular data sets | Q29547277 | ||
| Trimmomatic: a flexible trimmer for Illumina sequence data | Q29547278 | ||
| Mauve: multiple alignment of conserved genomic sequence with rearrangements | Q29547292 | ||
| BEDTools: a flexible suite of utilities for comparing genomic features | Q29547332 | ||
| InterProScan--an integration platform for the signature-recognition methods in InterPro | Q29547336 | ||
| Circos: an information aesthetic for comparative genomics | Q29547653 | ||
| trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses | Q29547690 | ||
| Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds | Q29547833 | ||
| Multiple alignment of DNA sequences with MAFFT | Q29614386 | ||
| Origin and evolution of retroelements based upon their reverse transcriptase sequences | Q29614742 | ||
| STAR: ultrafast universal RNA-seq aligner | Q29615052 | ||
| CD-HIT: accelerated for clustering the next-generation sequencing data | Q29616664 | ||
| GMAP: a genomic mapping and alignment program for mRNA and EST sequences | Q29616836 | ||
| KAAS: an automatic genome annotation and pathway reconstruction server | Q29617232 | ||
| Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads | Q29617402 | ||
| The age and diversification of the angiosperms re-revisited | Q29619385 | ||
| CMsearch: simultaneous exploration of protein sequence space and structure space improves not only protein homology detection but also protein structure prediction | Q30389343 | ||
| The genome of Prunus mume | Q30459409 | ||
| Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx | Q30831935 | ||
| FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments | Q31111556 | ||
| SyMAP: A system for discovering and viewing syntenic regions of FPC maps | Q33256256 | ||
| LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons | Q33314625 | ||
| A transposon-induced epigenetic change leads to sex determination in melon | Q33348078 | ||
| Addressing the "hardest puzzle in American pomology:" Phylogeny of Prunus sect. Prunocerasus (Rosaceae) based on seven noncoding chloroplast DNA regions | Q33351486 | ||
| Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome Duplication | Q33590746 | ||
| Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation | Q33622593 | ||
| Hidden Markov model speed heuristic and iterative HMM search procedure | Q33662738 | ||
| Considering transposable element diversification in de novo annotation approaches | Q33815667 | ||
| A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data | Q34014340 | ||
| Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm | Q34115338 | ||
| Lignin biosynthesis and structure | Q34115623 | ||
| Next generation sequence assembly with AMOS. | Q34170526 | ||
| P-MITE: a database for plant miniature inverted-repeat transposable elements | Q34381445 | ||
| PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome | Q34387795 | ||
| StringTie enables improved reconstruction of a transcriptome from RNA-seq reads | Q34463372 | ||
| Three distinct mutational mechanisms acting on a single gene underpin the origin of yellow flesh in peach | Q34467822 | ||
| BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs | Q34480034 | ||
| The Pfam protein families database: towards a more sustainable future | Q34505322 | ||
| AUGUSTUS: ab initio prediction of alternative transcripts | Q34548015 | ||
| Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics | Q34551008 | ||
| A fast, lock-free approach for efficient parallel counting of occurrences of k-mers | Q34635910 | ||
| ALLMAPS: robust scaffold ordering based on multiple maps. | Q35008729 | ||
| A unique mutation in a MYB gene cosegregates with the nectarine phenotype in peach | Q35111307 | ||
| PASTEC: an automatic transposable element classification tool | Q35160818 | ||
| Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes | Q35174463 | ||
| SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information | Q35192458 | ||
| A transposable element in a NAC gene is associated with drought tolerance in maize seedlings | Q36128745 | ||
| High-density mapping suggests cytoplasmic male sterility with two restorer genes in almond × peach progenies | Q36129603 | ||
| Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules | Q36155746 | ||
| The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity | Q36305084 | ||
| Comparative mapping and marker-assisted selection in Rosaceae fruit crops | Q36449353 | ||
| The MaSuRCA genome assembler | Q37236854 | ||
| Large-scale assignment of orthology: back to phylogenetics? | Q37317242 | ||
| GenomeScope: Fast reference-free genome profiling from short reads. | Q38860398 | ||
| KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies. | Q39232218 | ||
| The evolution and function of vessel and pit characters with respect to cavitation resistance across 10 Prunus species | Q39438572 | ||
| MapChart: software for the graphical presentation of linkage maps and QTLs | Q39605798 | ||
| Assemblytics: a web analytics tool for the detection of variants from an assembly. | Q39673227 | ||
| Redundans: an assembly pipeline for highly heterozygous genomes | Q41829725 | ||
| Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. | Q41836564 | ||
| P433 | issue | 2 | |
| P304 | page(s) | 455-472 | |
| P577 | publication date | 2019-10-22 | |
| P1433 | published in | The Plant Journal | Q15766987 |
| P1476 | title | Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence | |
| P478 | volume | 101 |
| Q96640248 | Comparative and Phylogenetic Analyses of the Complete Chloroplast Genomes of Six Almond Species (Prunus spp. L.). |
| Q98578896 | Genome-wide identification and expression analysis of the MYB transcription factor in Japanese plum (Prunus salicina) |
| Q92740432 | Variation among S-locus haplotypes and among stylar RNases in almond |
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