Modular architecture of metabolic pathways revealed by conserved sequences of reactions

scientific article

Modular architecture of metabolic pathways revealed by conserved sequences of reactions is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/jcisd/MutoKTNGK13
P356DOI10.1021/CI3005379
P3181OpenCitations bibliographic resource ID3628898
P932PMC publication ID3632090
P698PubMed publication ID23384306
P5875ResearchGate publication ID235404197

P50authorMinoru KanehisaQ39758239
P2093author name stringSusumu Goto
Toshiaki Tokimatsu
Ai Muto
Masaaki Kotera
Zenichi Nakagawa
P2860cites workOn the Evolution of Biochemical SynthesesQ24522220
Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequencesQ24548064
KEGG for integration and interpretation of large-scale molecular data setsQ29547277
Enzyme recruitment in evolution of new functionQ29615890
Hierarchical organization of modularity in metabolic networksQ29618451
Functional genomics and enzyme evolution. Homologous and analogous enzymes encoded in microbial genomesQ30845116
Extraction of phylogenetic network modules from the metabolic networkQ33236257
2-Hydroxycyclohexanecarboxyl coenzyme A dehydrogenase, an enzyme characteristic of the anaerobic benzoate degradation pathway used by Rhodopseudomonas palustrisQ33603175
Pathway alignment: application to the comparative analysis of glycolytic enzymesQ34505049
SubMAP: aligning metabolic pathways with subnetwork mappingsQ35070376
Hierarchical thinking in network biology: the unbiased modularization of biochemical networks.Q35950686
ExplorEnz: the primary source of the IUBMB enzyme listQ37262706
From hormones to secondary metabolism: the emergence of metabolic gene clusters in plantsQ37858621
Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactionsQ38418372
A heuristic graph comparison algorithm and its application to detect functionally related enzyme clustersQ39584601
Complete genome sequence of the BTEX-degrading bacterium Pseudoxanthomonas spadix BD-a59Q40346565
The beta-ketoadipate pathway and the biology of self-identityQ41199628
Reconstruction of amino acid biosynthesis pathways from the complete genome sequence.Q41729283
The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1.Q42640908
Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniaeQ43887992
Alignment of metabolic pathways.Q45904398
Discovery of proteinaceous N-modification in lysine biosynthesis of Thermus thermophilus.Q45924414
Simple and fast alignment of metabolic pathways by exploiting local diversity.Q48398647
Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways.Q52008917
A multiple alignment algorithm for metabolic pathway analysis using enzyme hierarchy.Q52074399
On earlier states of the biochemical systemQ67285593
Evolution of metabolisms: a new method for the comparison of metabolic pathways using genomics informationQ73229572
P433issue3
P407language of work or nameEnglishQ1860
P304page(s)613-22
P577publication date2013-03-25
P1433published inJournal of Chemical Information and ModelingQ3007982
P1476titleModular architecture of metabolic pathways revealed by conserved sequences of reactions
P478volume53

Reverse relations

cites work (P2860)
Q35843123A new network representation of the metabolism to detect chemical transformation modules
Q27975958BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
Q40542435Boolean network model for GPR142 against Type 2 diabetes and relative dynamic change ratio analysis using systems and biological circuits approach
Q28293737Chemical and genomic evolution of enzyme-catalyzed reaction networks
Q60912342CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts
Q24568332Data, information, knowledge and principle: back to metabolism in KEGG
Q50886075Deciphering the Biochemical Pathway and Pharmacokinetic Study of Amyloid βeta-42 with Superparamagnetic Iron Oxide Nanoparticles (SPIONs) Using Systems Biology Approach.
Q57837743Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models
Q64039986Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models
Q46546933Dynamic Evolution of Nitric Oxide Detoxifying Flavohemoglobins, a Family of Single-Protein Metabolic Modules in Bacteria and Eukaryotes
Q37557725Ecology drives the distribution of specialized tyrosine metabolism modules in fungi
Q35596622Elements of the cellular metabolic structure
Q54945748Identification of reaction organization patterns that naturally cluster enzymatic transformations.
Q28598169Importance of metabolic rate to the relationship between the number of genes in a functional category and body size in Peto's paradox for cancer
Q92559423Improving the organization and interactivity of metabolic pathfinding with precomputed pathways
Q35560135Influence of age, reproductive cycling status, and menstruation on the vaginal microbiome in baboons (Papio anubis)
Q36434599KEGG as a reference resource for gene and protein annotation
Q37556832KEGG: new perspectives on genomes, pathways, diseases and drugs
Q46634916Knowledge-based generalization of metabolic networks: a practical study
Q28074539Metabolic pathway reconstruction strategies for central metabolism and natural product biosynthesis
Q39669162Metabolic potential of microbial mats and microbialites: Autotrophic capabilities described by an in silico stoichiometric approach from shared genomic resources.
Q33760384Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach.
Q55115605Methane-yielding microbial communities processing lactate-rich substrates: a piece of the anaerobic digestion puzzle.
Q38421057PIERO ontology for analysis of biochemical transformations: effective implementation of reaction information in the IUBMB enzyme list
Q64103300Potential Functions of the Gastrointestinal Microbiome Inhabiting the Length of the Rat Digest Tract
Q49789049Specialized plant biochemistry drives gene clustering in fungi.
Q52371257Structure Based Virtual Screening Studies to Identify Novel Potential Compounds for GPR142 and Their Relative Dynamic Analysis for Study of Type 2 Diabetes.
Q92305781The impact of the genetic background on gene deletion phenotypes in Saccharomyces cerevisiae
Q35574926The proportion of genes in a functional category is linked to mass-specific metabolic rate and lifespan

Search more.