Microcompartments for B12-dependent 1,2-propanediol degradation provide protection from DNA and cellular damage by a reactive metabolic intermediate

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Microcompartments for B12-dependent 1,2-propanediol degradation provide protection from DNA and cellular damage by a reactive metabolic intermediate is …
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scholarly articleQ13442814

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P356DOI10.1128/JB.01925-07
P8608Fatcat IDrelease_dyvjfvamobdynicjfv54cjdcpa
P3181OpenCitations bibliographic resource ID1694031
P932PMC publication ID2293232
P698PubMed publication ID18296526
P5875ResearchGate publication ID5554790

P2093author name stringThomas A Bobik
Edith M Sampson
P2860cites workProtein Structures Forming the Shell of Primitive Bacterial OrganellesQ22299353
Polyhedral organelles compartmenting bacterial metabolic processesQ22337449
Conserving a volatile metabolite: a role for carboxysome-like organelles in Salmonella entericaQ24544157
Functional genomic, biochemical, and genetic characterization of the Salmonella pduO gene, an ATP:cob(I)alamin adenosyltransferase geneQ24548931
Salmonella typhimurium LT2 catabolizes propionate via the 2-methylcitric acid cycleQ24549164
Microcompartments in prokaryotes: carboxysomes and related polyhedraQ24549721
An Improved Bacterial Test System for the Detection and Classification of Mutagens and CarcinogensQ24564335
Functional insights from structural genomicsQ27646345
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR productsQ27860842
An intramolecular oxidation-reduction requiring a cobamide coenzymeQ28185583
Propionate catabolism in Salmonella typhimurium LT2: two divergently transcribed units comprise the prp locus at 8.5 centisomes, prpR encodes a member of the sigma-54 family of activators, and the prpBCDE genes constitute an operonQ28490062
Differential patterns of acquired virulence genes distinguish Salmonella strainsQ28776476
Acetylornithinase of Escherichia coli: partial purification and some propertiesQ29615297
A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxRQ29615324
Protein content of polyhedral organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol in Salmonella enterica serovar Typhimurium LT2Q31154125
The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradationQ33635809
Coordinate intracellular expression of Salmonella genes induced during infection.Q33991109
Propionyl Coenzyme A Is a Common Intermediate in the 1,2-Propanediol and Propionate Catabolic Pathways Needed for Expression of the prpBCDE Operon during Growth of Salmonella enterica on 1,2-PropanediolQ34191180
Cobalamin-dependent 1,2-propanediol utilization by Salmonella typhimuriumQ34191532
A single regulatory gene integrates control of vitamin B12 synthesis and propanediol degradationQ34234308
PduP is a coenzyme-a-acylating propionaldehyde dehydrogenase associated with the polyhedral bodies involved in B 12 -dependent 1,2-propanediol degradation by Salmonella enterica serovar Typhimurium LT2Q34264452
PduA is a shell protein of polyhedral organelles involved in coenzyme B(12)-dependent degradation of 1,2-propanediol in Salmonella enterica serovar typhimurium LT2.Q34305977
Cell-to-cell signalling in Escherichia coli and Salmonella enterica.Q34319096
Ethanolamine utilization in Salmonella typhimurium: nucleotide sequence, protein expression, and mutational analysis of the cchA cchB eutE eutJ eutG eutH gene clusterQ34319376
The control region of the pdu/cob regulon in Salmonella typhimuriumQ34332777
Minimal functions and physiological conditions required for growth of salmonella enterica on ethanolamine in the absence of the metabolosomeQ34468129
PduL is an evolutionarily distinct phosphotransacylase involved in B12-dependent 1,2-propanediol degradation by Salmonella enterica serovar typhimurium LT2.Q34589424
Glutathione is required for maximal transcription of the cobalamin biosynthetic and 1,2-propanediol utilization (cob/pdu) regulon and for the catabolism of ethanolamine, 1,2-propanediol, and propionate in Salmonella typhimurium LT2.Q35595241
DNA polymerase I function is required for the utilization of ethanolamine, 1,2-propanediol, and propionate by Salmonella typhimurium LT2Q35599859
The poc locus is required for 1,2-propanediol-dependent transcription of the cobalamin biosynthetic (cob) and propanediol utilization (pdu) genes of Salmonella typhimuriumQ36110570
Self-assembly in the carboxysome: a viral capsid-like protein shell in bacterial cells.Q36825995
Studies of regulation of expression of the propionate (prpBCDE) operon provide insights into how Salmonella typhimurium LT2 integrates its 1,2-propanediol and propionate catabolic pathwaysQ39568964
Anaerobic metabolism of the L-rhamnose fermentation product 1,2-propanediol in Salmonella typhimuriumQ39953118
Fermentation of 1,2-Propanediol and 1,2-Ethanediol by Some Genera of Enterobacteriaceae , Involving Coenzyme B 12 -Dependent Diol DehydrataseQ39973227
Characterization of the propionyl-CoA synthetase (PrpE) enzyme of Salmonella enterica: residue Lys592 is required for propionyl-AMP synthesisQ43883504
Biochemical evidence that the pduS gene encodes a bifunctional cobalamin reductaseQ46427803
A method for detection of phage mutants with altered transducing abilityQ50239404
Procedure for Identifying Nonsense MutationsQ95780700
P433issue8
P407language of work or nameEnglishQ1860
P304page(s)2966-71
P577publication date2008-04-01
P1433published inJournal of BacteriologyQ478419
P1476titleMicrocompartments for B12-dependent 1,2-propanediol degradation provide protection from DNA and cellular damage by a reactive metabolic intermediate
P478volume190

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cites work (P2860)
Q352327541,3-Propanediol dehydrogenases in Lactobacillus reuteri: impact on central metabolism and 3-hydroxypropionaldehyde production
Q52673284A Bacterial Microcompartment Is Used for Choline Fermentation by Escherichia coli 536.
Q91920186A designed bacterial microcompartment shell with tunable composition and precision cargo loading
Q53663321A novel route for ethanol oxidation in the acetogenic bacterium Acetobacterium woodii: the acetaldehyde/ethanol dehydrogenase pathway.
Q44336424A rapid flow cytometry assay for the relative quantification of protein encapsulation into bacterial microcompartments
Q36364294A systems-level model reveals that 1,2-Propanediol utilization microcompartments enhance pathway flux through intermediate sequestration
Q21092514A taxonomy of bacterial microcompartment loci constructed by a novel scoring method
Q27683470Alanine Scanning Mutagenesis Identifies an Asparagine–Arginine–Lysine Triad Essential to Assembly of the Shell of the Pdu Microcompartment
Q42083624Anaerobic biotransformation of high concentrations of chloroform by an enrichment culture and two bacterial isolates
Q90160092Apparent size and morphology of bacterial microcompartments varies with technique
Q91707848Bacterial Microcompartment-Dependent 1,2-Propanediol Utilization Stimulates Anaerobic Growth of Listeria monocytogenes EGDe
Q34498470Bacterial microcompartment assembly: The key role of encapsulation peptides
Q34101360Bacterial microcompartment organelles: protein shell structure and evolution
Q27676672Bacterial microcompartment shells of diverse functional types possess pentameric vertex proteins
Q35962783Bacterial microcompartments as metabolic modules for plant synthetic biology
Q90634921Bacterial microcompartments: catalysis-enhancing metabolic modules for next generation metabolic and biomedical engineering
Q33378156Bacterial microcompartments: their properties and paradoxes
Q38543214Bacterial microcompartments: widespread prokaryotic organelles for isolation and optimization of metabolic pathways
Q26860453Beyond the cytoskeleton: mesoscale assemblies and their function in spatial organization
Q91737082Cargo encapsulation in bacterial microcompartments: Methods and analysis
Q90227342Characterization of a Glycyl Radical Enzyme Bacterial Microcompartment Pathway in Rhodobacter capsulatus
Q34401543Characterization of a planctomycetal organelle: a novel bacterial microcompartment for the aerobic degradation of plant saccharides.
Q33639840Characterization of the PduS cobalamin reductase of Salmonella enterica and its role in the Pdu microcompartment
Q57166674Comparative Genomics Reveal a Flagellar System, a Type VI Secretion System and Plant Growth-Promoting Gene Clusters Unique to the Endophytic Bacterium
Q36291786De novo design of signal sequences to localize cargo to the 1,2-propanediol utilization microcompartment
Q58707492De novo targeting to the cytoplasmic and luminal side of bacterial microcompartments
Q42292683Development of an efficient technique for gene deletion and allelic exchange in Geobacillus spp.
Q38264076Developmental strategies and regulation of cell-free enzyme system for ethanol production: a molecular prospective.
Q34041895Diverse bacterial microcompartment organelles
Q36015515Dumpster Diving in the Gut: Bacterial Microcompartments as Part of a Host-Associated Lifestyle
Q36192448Effect of bio-engineering on size, shape, composition and rigidity of bacterial microcompartments
Q89696193Effect of metabolosome encapsulation peptides on enzyme activity, coaggregation, incorporation, and bacterial microcompartment formation
Q57280411Effects of microcompartmentation on flux distribution and metabolic pools in chloroplasts
Q41760672Effects of synthetic cohesin-containing scaffold protein architecture on binding dockerin-enzyme fusions on the surface of Lactococcus lactis
Q28601177Employing bacterial microcompartment technology to engineer a shell-free enzyme-aggregate for enhanced 1,2-propanediol production in Escherichia coli
Q39387664Encapsulins: molecular biology of the shell.
Q37957323Engineered biological entities for drug delivery and gene therapy protein nanoparticles.
Q47262269Engineered synthetic scaffolds for organizing proteins within the bacterial cytoplasm
Q47441030Engineering nanoreactors using bacterial microcompartment architectures
Q34576484Engineering transcriptional regulation to control Pdu microcompartment formation
Q37717648Enzyme IIANtr Regulates Salmonella Invasion Via 1,2-Propanediol And Propionate Catabolism
Q34339232Evidence that a metabolic microcompartment contains and recycles private cofactor pools
Q42835676Exogenous or L-rhamnose-derived 1,2-propanediol is metabolized via a pduD-dependent pathway in Listeria innocua
Q30153236Exploring bacterial organelle interactomes: a model of the protein-protein interaction network in the Pdu microcompartment
Q34740541Genetic analysis of the protein shell of the microcompartments involved in coenzyme B12-dependent 1,2-propanediol degradation by Salmonella.
Q89766186Genetic characterization of a glycyl radical microcompartment used for 1,2-propanediol fermentation by uropathogenic Escherichia coli CFT073
Q34247963Identification of a unique Fe-S cluster binding site in a glycyl-radical type microcompartment shell protein
Q35627278In Salmonella enterica, Ethanolamine Utilization Is Repressed by 1,2-Propanediol To Prevent Detrimental Mixing of Components of Two Different Bacterial Microcompartments
Q35929854Insight into Coenzyme A cofactor binding and the mechanism of acyl-transfer in an acylating aldehyde dehydrogenase from Clostridium phytofermentans
Q36756559Inter-phylum HGT has shaped the metabolism of many mesophilic and anaerobic bacteria
Q36236300Interactions between the termini of lumen enzymes and shell proteins mediate enzyme encapsulation into bacterial microcompartments.
Q34326294Involvement of a bacterial microcompartment in the metabolism of fucose and rhamnose by Clostridium phytofermentans
Q33333367Lactobacillus reuteri DSM 20016 produces cobalamin-dependent diol dehydratase in metabolosomes and metabolizes 1,2-propanediol by disproportionation
Q36115880Localization of proteins to the 1,2-propanediol utilization microcompartment by non-native signal sequences is mediated by a common hydrophobic motif
Q35134158Microbial engineering for aldehyde synthesis
Q34241758Modularity of a carbon-fixing protein organelle
Q46439324Molecular Dynamics Simulations of Selective Metabolite Transport across the Propanediol Bacterial Microcompartment Shell.
Q34746909Nonacetogenic growth of the acetogen Acetobacterium woodii on 1,2-propanediol
Q48818320Optimal Compartmentalization Strategies for Metabolic Microcompartments.
Q35668113Perturbation of FliL interferes with Proteus mirabilis swarmer cell gene expression and differentiation
Q36534954Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics
Q28661058Production of medium chain length fatty alcohols from glucose in Escherichia coli
Q61135729Programmed loading and rapid purification of engineered bacterial microcompartment shells
Q33704735Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation.
Q34205663Quantitative Analysis of Cellular Metabolic Dissipative, Self-Organized Structures
Q42591490Regulation of fucose and 1,2-propanediol utilization by Salmonella enterica serovar Typhimurium
Q56751809Selective and responsive nanoreactors
Q34464374Selective molecular transport through the protein shell of a bacterial microcompartment organelle
Q34064998Self-assembling, protein-based intracellular bacterial organelles: emerging vehicles for encapsulating, targeting and delivering therapeutical cargoes
Q33841918Short N-terminal sequences package proteins into bacterial microcompartments
Q37938501Spatial organization of enzymes for metabolic engineering
Q55137252Spatially organizing biochemistry: choosing a strategy to translate synthetic biology to the factory.
Q36872310Spectroscopic Studies of the EutT Adenosyltransferase from Salmonella enterica: Mechanism of Four-Coordinate Co(II)Cbl Formation
Q27664676Structural Insight into the Mechanisms of Transport across the Salmonella enterica Pdu Microcompartment Shell
Q38850270Structure and expression of propanediol utilization microcompartments in Acetonema longum
Q27658834Structure and mechanisms of a protein-based organelle in Escherichia coli
Q34652791Structure of a bacterial microcompartment shell protein bound to a cobalamin cofactor
Q27656729Structure of a trimeric bacterial microcompartment shell protein, EtuB, associated with ethanol utilization in Clostridium kluyveri
Q27652096Structure of the PduU shell protein from the Pdu microcompartment of Salmonella
Q50420153Subcellular Organization: A Critical Feature of Bacterial Cell Replication
Q27683447Substrate channels revealed in the trimeric Lactobacillus reuteri bacterial microcompartment shell protein PduB
Q57016865Synthetic Biology of Antibiotic Production
Q33703476The Carboxysome Shell Is Permeable to Protons
Q41674641The N Terminus of the PduB Protein Binds the Protein Shell of the Pdu Microcompartment to Its Enzymatic Core
Q34206388The N-terminal region of the medium subunit (PduD) packages adenosylcobalamin-dependent diol dehydratase (PduCDE) into the Pdu microcompartment
Q35914211The PduL Phosphotransacylase Is Used To Recycle Coenzyme A within the Pdu Microcompartment
Q35867700The PduM protein is a structural component of the microcompartments involved in coenzyme B(12)-dependent 1,2-propanediol degradation by Salmonella enterica
Q28563571The PduQ enzyme is an alcohol dehydrogenase used to recycle NAD+ internally within the Pdu microcompartment of Salmonella enterica
Q28474901The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications
Q42270208The effects of time, temperature, and pH on the stability of PDU bacterial microcompartments
Q40967399The function of the PduJ microcompartment shell protein is determined by the genomic position of its encoding gene
Q34164089The protein shells of bacterial microcompartment organelles
Q34900105The shells of BMC-type microcompartment organelles in bacteria
Q30434043Two-dimensional crystals of carboxysome shell proteins recapitulate the hexagonal packing of three-dimensional crystals
Q47355376Ty1-fused protein-body formation for spatial organization of metabolic pathways in Saccharomyces cerevisiae.
Q34314123Using comparative genomics to uncover new kinds of protein-based metabolic organelles in bacteria

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