Spatial organization of enzymes for metabolic engineering

scientific article published on 18 September 2011

Spatial organization of enzymes for metabolic engineering is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

External links are
P356DOI10.1016/J.YMBEN.2011.09.003
P698PubMed publication ID21946160

P2093author name stringHanson Lee
John E Dueber
William C DeLoache
P2860cites workHalothiobacillus neapolitanus carboxysomes sequester heterologous and chimeric RubisCO speciesQ21562528
Protein Structures Forming the Shell of Primitive Bacterial OrganellesQ22299353
Identification of novel filament-forming proteins in Saccharomyces cerevisiae and Drosophila melanogasterQ24627262
The structure of isolated Synechococcus strain WH8102 carboxysomes as revealed by electron cryotomographyQ24644502
Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modificationQ24651280
Microcompartments for B12-dependent 1,2-propanediol degradation provide protection from DNA and cellular damage by a reactive metabolic intermediateQ24655234
Draft Crystal Structure of the Vault Shell at 9-Å ResolutionQ27649159
Atomic-level models of the bacterial carboxysome shellQ27649910
Structure of the PduU shell protein from the Pdu microcompartment of SalmonellaQ27652096
The structure of rat liver vault at 3.5 angstrom resolutionQ27653443
Structural basis of enzyme encapsulation into a bacterial nanocompartmentQ27653528
Identification and structural analysis of a novel carboxysome shell protein with implications for metabolite transportQ27654482
Crystal structure of the EutL shell protein of the ethanolamine ammonia lyase microcompartmentQ27655511
Structure and mechanisms of a protein-based organelle in Escherichia coliQ27658834
Widespread reorganization of metabolic enzymes into reversible assemblies upon nutrient starvation.Q27933749
Organization of intracellular reactions with rationally designed RNA assembliesQ28241565
Docking interactions in protein kinase and phosphatase networksQ28271644
Vault nanoparticles containing an adenovirus-derived membrane lytic protein facilitate toxin and gene transferQ39882315
Fluorescence resonance energy transfer sensors for quantitative monitoring of pentose and disaccharide accumulation in bacteriaQ40370431
Modeling of spatial metabolite distributions in the cardiac sarcomereQ42850661
Utilization of a protein "shuttle" to load vault nanocapsules with gold probes and proteinsQ43272545
Discrete microdomains with high concentration of cAMP in stimulated rat neonatal cardiac myocytesQ43901717
Calcium secretion coupling at calyx of Held governed by nonuniform channel-vesicle topography.Q43906979
Directed evolution of a protein containerQ43979618
A mathematical analysis of second messenger compartmentalizationQ44068789
Dimerization of the type 4 cAMP-specific phosphodiesterases is mediated by the upstream conserved regions (UCRs).Q44102162
Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signalsQ44384522
Imaging calcium entry sites and ribbon structures in two presynaptic cells.Q44396199
Development of a fluorescent nanosensor for riboseQ44612479
Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coliQ46112352
A simple tagging system for protein encapsulationQ50734602
Enzyme cascades activated on topologically programmed DNA scaffolds.Q51732116
T-jump study of calcium binding kinetics of calcium chelators.Q52248303
Isolation and characterization of a novel ribonucleoprotein particle: large structures contain a single species of small RNAQ28285185
Protein-based organelles in bacteria: carboxysomes and related microcompartmentsQ28289715
Production of glucaric acid from a synthetic pathway in recombinant Escherichia coliQ28303073
RNA location and modeling of a WD40 repeat domain within the vaultQ28581382
The postsynaptic architecture of excitatory synapses: a more quantitative viewQ29617941
Development of highly selective SH3 binding peptides for Crk and CRKL which disrupt Crk-complexes with DOCK180, SoS and C3G.Q30176195
Organization of the core structure of the postsynaptic densityQ30482020
A specificity map for the PDZ domain familyQ33373127
Usefulness and limitations of linear approximations to the understanding of Ca++ signalsQ33544680
Rapid diversification of cell signaling phenotypes by modular domain recombinationQ33556382
Synthesis of empty bacterial microcompartments, directed organelle protein incorporation, and evidence of filament-associated organelle movement.Q33563714
Short N-terminal sequences package proteins into bacterial microcompartmentsQ33841918
Mass of the postsynaptic density and enumeration of three key moleculesQ33910509
Engineering of vault nanocapsules with enzymatic and fluorescent propertiesQ33934589
Visualization of maltose uptake in living yeast cells by fluorescent nanosensors.Q34075946
Bacterial microcompartment organelles: protein shell structure and evolutionQ34101360
Vaults are dynamically unconstrained cytoplasmic nanoparticles capable of half vault exchangeQ34485547
CO2 fixation kinetics of Halothiobacillus neapolitanus mutant carboxysomes lacking carbonic anhydrase suggest the shell acts as a diffusional barrier for CO2.Q34747436
Reversible compartmentalization of de novo purine biosynthetic complexes in living cellsQ34767701
Engineering the spatial organization of metabolic enzymes: mimicking nature's synergyQ34813104
Synthetic protein scaffolds provide modular control over metabolic flux.Q34995237
AKAP5 and AKAP12 Form Homo-oligomersQ35040162
Engineering proteins that bind, move, make and break DNA.Q35207823
Sculpting the proteome with AAA(+) proteases and disassembly machines.Q35904074
Rewiring cell signaling: the logic and plasticity of eukaryotic protein circuitryQ35975039
Transcriptional regulators à la carte: engineering new effector specificities in bacterial regulatory proteinsQ36344435
Higher-order organization and regulation of adenylyl cyclasesQ36527091
Application of functional genomics to pathway optimization for increased isoprenoid production.Q36672684
A vault nanoparticle vaccine induces protective mucosal immunityQ37165790
Compartmentalized signalling: Ca2+ compartments, microdomains and the many facets of Ca2+ signallingQ37401394
Compartmentalized signalling: spatial regulation of cAMP by the action of compartmentalized phosphodiesterases.Q37401396
A new wave of cellular imaging.Q37798552
Manufacturing molecules through metabolic engineeringQ37815351
Use of modular, synthetic scaffolds for improved production of glucaric acid in engineered E. coliQ38488895
P433issue3
P304page(s)242-251
P577publication date2011-09-18
P1433published inMetabolic EngineeringQ6822334
P1476titleSpatial organization of enzymes for metabolic engineering
P478volume14

Reverse relations

cites work (P2860)
Q26798072A Comparison of the Microbial Production and Combustion Characteristics of Three Alcohol Biofuels: Ethanol, 1-Butanol, and 1-Octanol
Q36056452A Suite of Engineered GFP Molecules for Oligomeric Scaffolding
Q28829469A roadmap for biocatalysis - functional and spatial orchestration of enzyme cascades
Q49196168A systematic optimization of styrene biosynthesis in Escherichia coli BL21(DE3).
Q36364294A systems-level model reveals that 1,2-Propanediol utilization microcompartments enhance pathway flux through intermediate sequestration
Q53618001A trifunctional, triangular RNA-protein complex.
Q27684690A virus capsid‐like nanocompartment that stores iron and protects bacteria from oxidative stress
Q50225378An artificial transport metabolon facilitates improved substrate utilization in yeast
Q51042244Artificial multienzyme supramolecular device: highly ordered self-assembly of oligomeric enzymes in vitro and in vivo
Q96166246Assembly of pathway enzymes by engineering functional membrane microdomain components for improved N-acetylglucosamine synthesis in Bacillus subtilis
Q91811390Beverage and Food Fragrance Biotechnology, Novel Applications, Sensory and Sensor Techniques: An Overview
Q26860453Beyond the cytoskeleton: mesoscale assemblies and their function in spatial organization
Q90267786Building a Thermostable Metabolon for Facilitating Coenzyme Transport and In Vitro Hydrogen Production at Elevated Temperature
Q46551540Butyrate production in engineered Escherichia coli with synthetic scaffolds.
Q38660462Cascades in Compartments: En route to Machine-Assisted Biotechnology
Q37679098Cellular factories for coenzyme Q10 production
Q47729969Computation-Guided Design of a Stimulus-Responsive Multienzyme Supramolecular Assembly
Q36230279Contextualizing context for synthetic biology--identifying causes of failure of synthetic biological systems
Q58707492De novo targeting to the cytoplasmic and luminal side of bacterial microcompartments
Q84942985Designing and using RNA scaffolds to assemble proteins in vivo
Q34041895Diverse bacterial microcompartment organelles
Q41760672Effects of synthetic cohesin-containing scaffold protein architecture on binding dockerin-enzyme fusions on the surface of Lactococcus lactis
Q28601177Employing bacterial microcompartment technology to engineer a shell-free enzyme-aggregate for enhanced 1,2-propanediol production in Escherichia coli
Q97094094Engineering bacterial microcompartments with heterologous enzyme cargos
Q26777834Engineering of Metabolic Pathways by Artificial Enzyme Channels
Q59832212Engineering of vesicle trafficking improves heterologous protein secretion in Saccharomyces cerevisiae
Q38639801Engineering the Bacterial Microcompartment Domain for Molecular Scaffolding Applications
Q38826039Enzymatic reactions in confined environments
Q90736768Enzyme Assembly for Compartmentalized Metabolic Flux Control
Q36338073Enzyme clustering accelerates processing of intermediates through metabolic channeling
Q57476720Enzyme fusion removes competition for geranylgeranyl diphosphate in carotenogenesis
Q38785556Extending the biosynthetic repertoires of cyanobacteria and chloroplasts
Q46247892Facile methods for heterologous production of bacterial microcompartments in diverse host species
Q51178665Fusion of an alcohol dehydrogenase with an aminotransferase using a PAS linker to improve coupled enzymatic alcohol-to-amine conversion.
Q38191007G-protein-coupled receptor regulation of de novo purine biosynthesis: a novel druggable mechanism.
Q59130657Genome mining of 2-phenylethanol biosynthetic genes from sp. CGMCC 5087 and heterologous overproduction in
Q60913730Improvement of isoprene production in Escherichia coli by rational optimization of RBSs and key enzymes screening
Q34044369In vivo co-localization of enzymes on RNA scaffolds increases metabolic production in a geometrically dependent manner
Q37287141Isoprenoid-Based Biofuels: Homologous Expression and Heterologous Expression in Prokaryotes
Q58812759Kaskaden in Kompartimenten: auf dem Weg zu maschinengestützter Biotechnologie
Q51063640Leucine zipper-mediated targeting of multi-enzyme cascade reactions to inclusion bodies in Escherichia coli for enhanced production of 1-butanol.
Q36115880Localization of proteins to the 1,2-propanediol utilization microcompartment by non-native signal sequences is mediated by a common hydrophobic motif
Q38389009Metabolic engineering for isoprenoid-based biofuel production
Q38589496Metabolic engineering of Escherichia coli for the production of phenylpyruvate derivatives
Q64938571Metabolic regulation of transcription through compartmentalized NAD+ biosynthesis.
Q38861084Multi-domain terpenoid cyclase architecture and prospects for proximity in bifunctional catalysis
Q38010995Natural strategies for the spatial optimization of metabolism in synthetic biology
Q27701730On the predictability of the orientation of protein domains joined by a spanning alpha-helical linker
Q48818320Optimal Compartmentalization Strategies for Metabolic Microcompartments.
Q91902402Optogenetic control of Bacillus subtilis gene expression
Q90335520Orthogonal Synthetic Zippers as Protein Scaffolds
Q34526539Protease-based synthetic sensing and signal amplification
Q37067347Protein design for pathway engineering
Q38099292Protein design in systems metabolic engineering for industrial strain development
Q96954486Protein engineering strategies for microbial production of isoprenoids
Q52431915Recent Advances in Metabolic Engineering of Saccharomyces cerevisiae: New Tools and Their Applications.
Q53395027Site-specific conjugation of an antibody-binding protein catalyzed by horseradish peroxidase creates a multivalent protein conjugate with high affinity to IgG.
Q39350533Spatial Organization of Metabolic Enzyme Complexes in Cells
Q39217986Spatial organization of multi-enzyme biocatalytic cascades.
Q50910149Strategies and perspectives of assembling multi-enzyme systems
Q38784351Substrate channelling as an approach to cascade reactions.
Q27001264Synthetic biology of antimicrobial discovery
Q83783241Synthetic biology: emerging methodologies to catalyze the metabolic engineering design cycle
Q38192996Synthetic metabolons for metabolic engineering
Q38153035Systems approaches for synthetic biology: a pathway toward mammalian design
Q42320711Tailored protein encapsulation into a DNA host using geometrically organized supramolecular interactions.
Q55315855The role of dynamic enzyme assemblies and substrate channelling in metabolic regulation.
Q26783565Tools and Principles for Microbial Gene Circuit Engineering
Q33813501Towards repurposing the yeast peroxisome for compartmentalizing heterologous metabolic pathways
Q27313536Turing Patterning Using Gene Circuits with Gas-Induced Degradation of Quorum Sensing Molecules
Q47355376Ty1-fused protein-body formation for spatial organization of metabolic pathways in Saccharomyces cerevisiae.

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