| P50 | author | Eugene Koonin | Q3699974 |
| | Michael Y. Galperin | Q30512826 |
| P2093 | author name string | Boris G Mirkin | |
| | Trevor I Fenner | |
| P2860 | cites work | Genome trees constructed using five different approaches suggest new major bacterial clades | Q21284133 |
| | Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya | Q22066209 |
| | Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima | Q22122435 |
| | The Last Universal Common Ancestor (LUCA), Simple or Complex? | Q22305752 |
| | Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process | Q24548515 |
| | The COG database: new developments in phylogenetic classification of proteins from complete genomes | Q24605347 |
| | Bacterial evolution | Q24634394 |
| | Archaea and the prokaryote-to-eukaryote transition | Q24643523 |
| | The winds of (evolutionary) change: breathing new life into microbiology | Q24669805 |
| | The process of genome shrinkage in the obligate symbiont Buchnera aphidicola | Q24799605 |
| | Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins | Q24804832 |
| | Crystal structure of reverse gyrase: insights into the positive supercoiling of DNA | Q27637557 |
| | A genomic perspective on protein families | Q27860913 |
| | Classification and evolution of P-loop GTPases and related ATPases | Q29547655 |
| | Phylogenetic classification and the universal tree | Q29547749 |
| | Mechanisms of evolution in Rickettsia conorii and R. prowazekii | Q29615837 |
| | Horizontal gene transfer in prokaryotes: quantification and classification | Q29616017 |
| | Conservation of gene order: a fingerprint of proteins that physically interact | Q29616049 |
| | Prokaryotic evolution in light of gene transfer | Q29617350 |
| | Genome phylogeny based on gene content | Q29617415 |
| | Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes | Q30004701 |
| | Trends in protein evolution inferred from sequence and structure analysis. | Q30331197 |
| | Universal trees based on large combined protein sequence data sets. | Q30655328 |
| | Critical issues in bacterial phylogeny | Q30711885 |
| | Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context | Q30982525 |
| | How many genes can make a cell: the minimal-gene-set concept | Q31029180 |
| | Genome trees and the tree of life | Q31103613 |
| | Variation and evolution of the citric-acid cycle: a genomic perspective. | Q33677040 |
| | Something for everyone. Horizontal gene transfer in evolution | Q33758250 |
| | Orthologs, paralogs and genome comparisons | Q33801581 |
| | Evolution of aminoacyl-tRNA synthetases--analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events. | Q33870978 |
| | On surrogate methods for detecting lateral gene transfer | Q34084913 |
| | Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores | Q34120494 |
| | Evolution of the vacuolar H+-ATPase: implications for the origin of eukaryotes | Q34161454 |
| | Protein-based phylogenies support a chimeric origin for the eukaryotic genome | Q34320040 |
| | Detection of lateral gene transfer among microbial genomes. | Q34420747 |
| | Selfish operons and speciation by gene transfer | Q34438888 |
| | Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea | Q34447405 |
| | Did DNA replication evolve twice independently? | Q34707188 |
| | The genomic tree as revealed from whole proteome comparisons | Q35023050 |
| | Universally conserved translation initiation factors | Q35672976 |
| | Reconstruction of ancient molecular phylogeny | Q38560968 |
| | Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium | Q39719225 |
| | Whole genome-based phylogenetic analysis of free-living microorganisms | Q39729408 |
| | Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels | Q40414224 |
| | DNA repair systems in archaea: mementos from the last universal common ancestor? | Q42609892 |
| | Looking for the most "primitive" organism(s) on Earth today: the state of the art. | Q43029272 |
| | The universal ancestor was a thermophile or a hyperthermophile | Q43029600 |
| | Eubacterial phylogeny based on translational apparatus proteins | Q44187337 |
| | Evolutionary anomalies among the aminoacyl-tRNA synthetases | Q46307159 |
| | Genome size reduction through multiple events of gene disintegration in Buchnera APS. | Q47200218 |
| | Horizontal transfer of ATPase genes--the tree of life becomes a net of life | Q47275652 |
| | Duplication-based measures of difference between gene and species trees. | Q52243607 |
| | On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies. | Q52261277 |
| | A biologically consistent model for comparing molecular phylogenies. | Q52356067 |
| | Genomics and early cellular evolution. The origin of the DNA world. | Q53981985 |
| | Genome plasticity as a paradigm of eubacteria evolution. | Q54573000 |
| | The origin of the eukaryotic cell | Q56430559 |
| | Archaeal phylogeny based on ribosomal proteins | Q56900865 |
| | Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene Content | Q56918343 |
| | SHOT: a web server for the construction of genome phylogenies | Q56918354 |
| | Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles | Q57263144 |
| | Universal tree of life | Q60064732 |
| | Gene order is not conserved in bacterial evolution | Q71476689 |
| | Non-orthologous gene displacement | Q71651862 |
| | The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome | Q73259105 |
| | Lateral genomics | Q73303270 |
| | A hot story from comparative genomics: reverse gyrase is the only hyperthermophile-specific protein | Q74238221 |
| | Genome data shake tree of life | Q74583333 |
| | Is it time to uproot the tree of life? | Q77926604 |
| P433 | issue | 1 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | algorithm | Q8366 |
| | prokaryotes | Q19081 |
| | horizontal gene transfer | Q83185 |
| P304 | page(s) | 2 | |
| P577 | publication date | 2003-01-06 | |
| P1433 | published in | BMC Evolutionary Biology | Q13418959 |
| P1476 | title | Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes | |
| P478 | volume | 3 | |